AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050431

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050431.t1 MTR_7g110140 97.719 263 6 0 2 264 3 265 0.0 517
MS.gene050431.t1 MTR_6g035395 72.266 256 58 1 1 256 1 243 6.61e-131 370
MS.gene050431.t1 MTR_2g090165 68.340 259 81 1 2 259 3 261 2.56e-127 362
MS.gene050431.t1 MTR_7g110130 68.582 261 81 1 2 261 3 263 3.41e-127 362
MS.gene050431.t1 MTR_7g110160 64.032 253 73 1 2 254 3 237 1.05e-108 314
MS.gene050431.t1 MTR_6g023590 50.598 251 122 2 4 252 12 262 6.84e-86 257
MS.gene050431.t1 MTR_6g023950 50.593 253 123 2 4 254 12 264 8.25e-83 249
MS.gene050431.t1 MTR_6g023990 49.004 251 126 2 4 252 13 263 1.75e-78 238
MS.gene050431.t1 MTR_6g023600 48.606 251 127 2 4 252 12 262 2.28e-78 238
MS.gene050431.t1 MTR_6g023610 50.000 250 123 2 4 251 12 261 7.63e-77 234
MS.gene050431.t1 MTR_4g052350 49.804 255 123 3 3 256 12 262 3.42e-76 233
MS.gene050431.t1 MTR_4g052340 49.804 255 123 3 3 256 12 262 5.57e-76 232
MS.gene050431.t1 MTR_4g052320 48.425 254 127 3 4 256 7 257 2.41e-75 230
MS.gene050431.t1 MTR_6g023600 48.207 251 122 3 4 252 12 256 7.60e-75 229
MS.gene050431.t1 MTR_7g071680 46.350 274 125 4 3 256 27 298 7.60e-75 230
MS.gene050431.t1 MTR_7g105460 47.826 253 130 2 4 255 12 263 8.06e-75 229
MS.gene050431.t1 MTR_6g023910 47.600 250 129 2 4 251 12 261 5.75e-73 224
MS.gene050431.t1 MTR_4g052300 48.031 254 127 3 4 256 7 256 4.09e-72 222
MS.gene050431.t1 MTR_7g083870 47.015 268 133 4 3 263 33 298 4.74e-71 220
MS.gene050431.t1 MTR_7g107670 43.446 267 143 4 3 263 31 295 2.84e-66 208
MS.gene050431.t1 MTR_3g020670 48.263 259 123 5 3 252 14 270 2.16e-63 200
MS.gene050431.t1 MTR_4g078630 46.332 259 126 5 3 252 17 271 2.60e-62 197
MS.gene050431.t1 MTR_7g105580 45.600 250 118 3 3 252 6 237 1.46e-61 194
MS.gene050431.t1 MTR_7g105590 46.486 185 97 2 3 186 6 189 2.03e-49 161
MS.gene050431.t1 MTR_7g105570 38.645 251 101 3 5 254 21 219 1.93e-45 152
MS.gene050431.t1 MTR_3g113870 42.857 182 101 3 13 193 29 208 2.59e-42 144
MS.gene050431.t1 MTR_4g084800 46.809 141 74 1 1 140 9 149 2.79e-38 131
MS.gene050431.t1 MTR_4g058840 30.798 263 153 5 5 250 11 261 2.00e-23 96.3
MS.gene050431.t1 MTR_4g058820 30.798 263 153 5 5 250 11 261 2.00e-23 96.3
MS.gene050431.t1 MTR_7g113650 29.961 257 163 6 4 250 39 288 2.98e-21 90.9
MS.gene050431.t1 MTR_1g051165 27.757 263 176 5 3 253 12 272 7.61e-21 89.7
MS.gene050431.t1 MTR_3g085740 29.183 257 163 9 3 251 73 318 4.74e-20 88.2
MS.gene050431.t1 MTR_4g058810 35.450 189 115 3 5 186 11 199 7.33e-20 86.7
MS.gene050431.t1 MTR_1g082760 29.323 266 153 7 4 250 39 288 1.05e-18 84.0
MS.gene050431.t1 MTR_4g132850 29.389 262 158 7 1 251 3 248 2.67e-18 82.0
MS.gene050431.t1 MTR_4g131740 28.030 264 166 8 4 253 39 292 4.65e-18 82.0
MS.gene050431.t1 MTR_6g023940 29.648 199 66 5 4 195 12 143 2.71e-17 77.0
MS.gene050431.t1 MTR_4g097510 31.217 189 126 4 6 193 3 188 3.28e-17 79.7
MS.gene050431.t1 MTR_1196s0010 30.040 253 156 9 6 251 275 513 7.11e-16 77.4
MS.gene050431.t1 MTR_8g442750 30.916 262 164 9 5 255 14 269 4.35e-15 73.9
MS.gene050431.t1 MTR_8g096580 32.512 203 130 4 3 201 43 242 7.22e-15 73.6
MS.gene050431.t1 MTR_7g094520 29.297 256 165 7 5 251 11 259 7.90e-15 72.8
MS.gene050431.t1 MTR_3g068085 28.958 259 174 9 5 259 15 267 1.27e-14 72.0
MS.gene050431.t1 MTR_3g068070 28.516 256 173 8 2 253 12 261 1.98e-14 71.6
MS.gene050431.t1 MTR_7g105560 56.897 58 25 0 1 58 9 66 7.23e-14 67.8
MS.gene050431.t1 MTR_4g064887 27.481 262 168 9 2 253 12 261 8.87e-14 69.7
MS.gene050431.t1 MTR_3g087850 30.939 181 115 5 9 186 30 203 1.87e-13 69.3
MS.gene050431.t1 MTR_7g094510 27.559 254 172 7 5 251 6 254 2.69e-13 68.2
MS.gene050431.t1 MTR_3g087860 30.939 181 113 6 27 202 34 207 2.87e-12 65.5
MS.gene050431.t1 MTR_4g066050 30.180 222 136 8 8 216 27 242 3.62e-12 65.1
MS.gene050431.t1 MTR_3g068065 26.357 258 182 6 5 259 17 269 4.69e-12 65.1
MS.gene050431.t1 MTR_4g086400 27.692 195 123 4 7 186 6 197 2.77e-11 63.9
MS.gene050431.t1 MTR_7g063270 27.626 257 175 7 2 252 13 264 7.13e-11 61.6
MS.gene050431.t1 MTR_7g076660 36.264 91 54 1 8 94 8 98 8.84e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050431.t1 AT2G47140 65.613 253 87 0 3 255 4 256 3.90e-121 346
MS.gene050431.t1 AT3G29250 62.055 253 94 2 4 255 5 256 2.58e-110 319
MS.gene050431.t1 AT3G29250 61.328 256 97 2 1 255 40 294 3.47e-110 320
MS.gene050431.t1 AT3G29250 62.055 253 94 2 4 255 41 292 8.04e-110 319
MS.gene050431.t1 AT3G29260 62.016 258 95 2 3 259 4 259 1.21e-108 315
MS.gene050431.t1 AT2G47130 60.547 256 92 2 4 255 5 255 4.28e-106 308
MS.gene050431.t1 AT2G47120 56.641 256 107 3 4 259 5 256 2.37e-99 291
MS.gene050431.t1 AT2G47120 56.641 256 107 3 4 259 6 257 2.48e-99 291
MS.gene050431.t1 AT3G51680 48.519 270 123 3 3 256 30 299 3.37e-76 234
MS.gene050431.t1 AT1G52340 46.067 267 130 6 3 257 16 280 4.87e-63 199
MS.gene050431.t1 AT3G26760 41.636 269 144 5 3 260 34 300 8.59e-63 199
MS.gene050431.t1 AT3G26770 40.996 261 143 5 3 255 39 296 1.33e-60 194
MS.gene050431.t1 AT4G03140 42.322 267 146 4 3 263 76 340 1.36e-60 195
MS.gene050431.t1 AT3G42960 44.280 271 133 5 3 264 6 267 1.30e-54 177
MS.gene050431.t1 AT2G47150 37.849 251 103 5 5 255 1 198 5.80e-43 145
MS.gene050431.t1 AT2G17845 30.147 272 154 8 5 254 47 304 1.13e-19 87.0
MS.gene050431.t1 AT3G55290 30.189 265 152 8 5 250 18 268 4.39e-19 84.7
MS.gene050431.t1 AT3G55290 30.189 265 152 8 5 250 17 267 4.69e-19 84.7
MS.gene050431.t1 AT2G29150 32.061 262 155 10 2 253 13 261 5.51e-19 84.3
MS.gene050431.t1 AT2G29360 30.769 260 162 10 2 253 13 262 1.15e-18 83.6
MS.gene050431.t1 AT2G29340 30.827 266 174 8 2 264 4 262 3.80e-18 82.0
MS.gene050431.t1 AT2G29340 30.980 255 168 7 2 253 4 253 6.94e-18 82.0
MS.gene050431.t1 AT1G62610 28.077 260 165 6 5 250 19 270 1.45e-17 80.5
MS.gene050431.t1 AT1G62610 28.077 260 165 6 5 250 13 264 1.49e-17 80.5
MS.gene050431.t1 AT1G62610 28.077 260 165 6 5 250 14 265 1.65e-17 80.5
MS.gene050431.t1 AT1G62610 28.077 260 165 6 5 250 15 266 1.74e-17 80.5
MS.gene050431.t1 AT3G55310 29.434 265 154 8 5 250 17 267 5.20e-17 79.0
MS.gene050431.t1 AT1G24360 28.016 257 170 8 3 253 72 319 5.70e-17 79.3
MS.gene050431.t1 AT3G46170 29.344 259 162 8 5 250 26 276 1.34e-16 78.2
MS.gene050431.t1 AT1G63380 29.615 260 161 9 5 250 19 270 1.56e-16 77.8
MS.gene050431.t1 AT1G63380 29.615 260 161 9 5 250 17 268 1.60e-16 77.8
MS.gene050431.t1 AT1G63380 29.615 260 161 9 5 250 15 266 1.62e-16 77.8
MS.gene050431.t1 AT1G63380 29.615 260 161 9 5 250 22 273 2.01e-16 77.4
MS.gene050431.t1 AT1G54870 29.457 258 163 7 4 250 83 332 8.21e-16 76.3
MS.gene050431.t1 AT1G54870 29.457 258 163 7 4 250 81 330 8.41e-16 76.3
MS.gene050431.t1 AT2G29370 29.615 260 165 10 2 253 13 262 1.06e-15 75.1
MS.gene050431.t1 AT3G05260 29.545 264 160 9 4 253 36 287 2.18e-15 74.7
MS.gene050431.t1 AT1G07450 28.627 255 173 7 2 253 5 253 2.28e-15 74.3
MS.gene050431.t1 AT2G29290 30.000 260 164 10 2 253 4 253 2.34e-15 74.3
MS.gene050431.t1 AT2G30670 27.344 256 176 6 2 253 4 253 1.60e-14 72.0
MS.gene050431.t1 AT2G29310 28.016 257 173 7 2 253 4 253 2.26e-14 71.2
MS.gene050431.t1 AT2G29350 29.231 260 165 10 2 253 12 260 2.75e-14 71.2
MS.gene050431.t1 AT4G05530 29.851 268 149 8 1 251 5 250 2.78e-14 70.9
MS.gene050431.t1 AT5G65205 30.159 189 122 5 6 191 7 188 2.84e-14 71.6
MS.gene050431.t1 AT1G07440 27.308 260 170 8 2 253 9 257 2.88e-14 71.2
MS.gene050431.t1 AT5G18210 29.457 258 165 8 5 251 8 259 8.10e-14 69.7
MS.gene050431.t1 AT2G29340 30.612 196 131 5 2 194 4 197 3.10e-13 67.4
MS.gene050431.t1 AT2G29340 30.612 196 131 5 2 194 4 197 3.10e-13 67.4
MS.gene050431.t1 AT5G10050 28.947 190 123 6 6 191 6 187 3.32e-13 68.2
MS.gene050431.t1 AT1G10310 30.366 191 128 4 8 195 18 206 4.14e-13 67.4
MS.gene050431.t1 AT5G06060 28.571 259 169 9 2 253 6 255 1.16e-12 66.6
MS.gene050431.t1 AT5G50600 26.000 250 160 8 3 231 43 288 1.25e-12 67.4
MS.gene050431.t1 AT5G50700 26.000 250 160 8 3 231 43 288 1.25e-12 67.4
MS.gene050431.t1 AT3G04000 29.545 264 160 10 5 250 14 269 2.27e-12 65.9
MS.gene050431.t1 AT4G20760 29.843 191 113 7 5 175 61 250 3.66e-12 65.9
MS.gene050431.t1 AT4G20760 29.843 191 113 7 5 175 41 230 4.25e-12 65.5
MS.gene050431.t1 AT3G12800 27.306 271 171 11 5 258 10 271 8.54e-12 64.3
MS.gene050431.t1 AT5G50770 30.000 190 125 5 1 186 41 226 4.83e-11 62.4
MS.gene050431.t1 AT4G13180 27.099 262 167 8 5 253 13 263 6.87e-11 61.6

Find 50 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAATTGTTTGCCGAAAA+TGG 0.162832 7.1:-4535944 MS.gene050431:CDS
AGTAGACATTCAAGATAAAT+TGG 0.192212 7.1:-4535906 MS.gene050431:CDS
TTTAGTAATGCAGGAATAAT+AGG 0.245500 7.1:-4535755 MS.gene050431:CDS
GTTAATAGTATATCCCCTTT+TGG 0.296854 7.1:-4535473 MS.gene050431:CDS
TGTGGAGAACTTGGTGGTTA+TGG 0.318822 7.1:-4535503 MS.gene050431:CDS
GAATGAATTTGAGAAAACTA+TGG 0.325001 7.1:-4535702 MS.gene050431:CDS
GGTCATAACTTGGTTGTTGA+TGG 0.345434 7.1:-4535290 MS.gene050431:CDS
GGAATAATAGGCTCTTTATC+TGG 0.363048 7.1:-4535743 MS.gene050431:CDS
ATGCAATTGGTCTACATATC+AGG 0.373432 7.1:+4535230 None:intergenic
TTTGAAGGGTATTGTGTTGA+AGG 0.381455 7.1:-4535372 MS.gene050431:CDS
TTTGATGTAGTATAACCATT+AGG 0.390831 7.1:+4535557 None:intergenic
ACAGGTGCAGCCAGTGGAAT+TGG 0.391122 7.1:-4535977 MS.gene050431:CDS
CATATCATCATTGTGATGTC+AGG 0.396278 7.1:-4535844 MS.gene050431:CDS
ACTAGCGTTGCAGCTTCTAT+TGG 0.399254 7.1:-4535590 MS.gene050431:CDS
ATTGGTGGAACAGGTCCTAA+TGG 0.415583 7.1:-4535572 MS.gene050431:CDS
AAAATCTAGGTTGGAGGGTA+AGG 0.417028 7.1:-4536011 MS.gene050431:intron
GCAGCTTCTATTGGTGGAAC+AGG 0.426744 7.1:-4535581 MS.gene050431:CDS
GTCATAACTTGGTTGTTGAT+GGG 0.428146 7.1:-4535289 MS.gene050431:CDS
CGTAAAGTTGCAGATTCAAT+AGG 0.430870 7.1:-4535881 MS.gene050431:CDS
AGAGGTGTTGCAACTCCAAA+AGG 0.435975 7.1:+4535458 None:intergenic
TAGTTCTCATGCTAATTTGA+AGG 0.456961 7.1:-4535387 MS.gene050431:CDS
TTATATCAGTGGTCATAACT+TGG 0.462346 7.1:-4535300 MS.gene050431:CDS
GGTAAGGTGGCAATAATAAC+AGG 0.465773 7.1:-4535995 MS.gene050431:CDS
AGAAACAATTCATTTCACTT+TGG 0.465833 7.1:-4535804 MS.gene050431:CDS
TGTTTCTTCACCAATTCCAC+TGG 0.482489 7.1:+4535967 None:intergenic
TCATAACTTGGTTGTTGATG+GGG 0.490805 7.1:-4535288 MS.gene050431:CDS
TAAGCATGCTGCGCGCGCCA+TGG 0.496972 7.1:-4535648 MS.gene050431:CDS
GTAGACATTCAAGATAAATT+GGG 0.503523 7.1:-4535905 MS.gene050431:CDS
CATAACTTGGTTGTTGATGG+GGG 0.511840 7.1:-4535287 MS.gene050431:CDS
AGCGTTGCAGCTTCTATTGG+TGG 0.515248 7.1:-4535587 MS.gene050431:CDS
TACATATCAGGCGTTGCAGA+TGG 0.522877 7.1:+4535242 None:intergenic
AAATCAGCTTGTGGAGAACT+TGG 0.524096 7.1:-4535512 MS.gene050431:CDS
AGTTCTCATGCTAATTTGAA+GGG 0.524264 7.1:-4535386 MS.gene050431:CDS
GAGGTGTTGCAACTCCAAAA+GGG 0.538111 7.1:+4535459 None:intergenic
ACTATGGCTACAAATGTTGT+TGG 0.550336 7.1:-4535686 MS.gene050431:CDS
TATGACAAAATCTAGGTTGG+AGG 0.554009 7.1:-4536017 MS.gene050431:intron
ATATCATCATTGTGATGTCA+GGG 0.558680 7.1:-4535843 MS.gene050431:CDS
GATGAAGCTGTTTATATCAG+TGG 0.560159 7.1:-4535311 MS.gene050431:CDS
ATGACAAAATCTAGGTTGGA+GGG 0.562378 7.1:-4536016 MS.gene050431:intron
GGACTTGTGAAATCAGCTTG+TGG 0.562826 7.1:-4535521 MS.gene050431:CDS
TTGTAAGCTATACACGAAAG+AGG 0.567482 7.1:+4535440 None:intergenic
TCAGCTTGTGGAGAACTTGG+TGG 0.578232 7.1:-4535509 MS.gene050431:CDS
ATCTAGGTTGGAGGGTAAGG+TGG 0.582293 7.1:-4536008 MS.gene050431:intron
GCATGCTGCGCGCGCCATGG+TGG 0.599712 7.1:-4535645 MS.gene050431:CDS
CATTATCAATGATGAAGCAA+AGG 0.601500 7.1:-4536149 None:intergenic
CTACTAGATTCAACTTCATG+AGG 0.605548 7.1:+4535410 None:intergenic
AGGTGTTGCAACTCCAAAAG+GGG 0.641177 7.1:+4535460 None:intergenic
ATAATAACAGGTGCAGCCAG+TGG 0.644904 7.1:-4535983 MS.gene050431:CDS
TAGTGCATATAATCGATCCA+CGG 0.666748 7.1:+4535612 None:intergenic
AGATGGAGTATTACGAACCA+CGG 0.715903 7.1:+4535259 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATTATGACAAAATCT+AGG - chr7.1:4535355-4535374 MS.gene050431:CDS 15.0%
! AGAAACAATTCATTTCACTT+TGG - chr7.1:4535575-4535594 MS.gene050431:CDS 25.0%
! AGAGACATATATCAAACTAT+AGG + chr7.1:4535259-4535278 None:intergenic 25.0%
! AGTAGACATTCAAGATAAAT+TGG - chr7.1:4535473-4535492 MS.gene050431:CDS 25.0%
! GAATGAATTTGAGAAAACTA+TGG - chr7.1:4535677-4535696 MS.gene050431:CDS 25.0%
! GTAGACATTCAAGATAAATT+GGG - chr7.1:4535474-4535493 MS.gene050431:CDS 25.0%
! TAAGCAGACAAGTAAAAATA+AGG + chr7.1:4535299-4535318 None:intergenic 25.0%
! TATTATGACAAAATCTAGGT+TGG - chr7.1:4535359-4535378 MS.gene050431:CDS 25.0%
! TTTAGTAATGCAGGAATAAT+AGG - chr7.1:4535624-4535643 MS.gene050431:CDS 25.0%
! TTTGATGTAGTATAACCATT+AGG + chr7.1:4535825-4535844 None:intergenic 25.0%
!! AATAACAAATGCTCCATTTT+CGG + chr7.1:4535451-4535470 None:intergenic 25.0%
!!! GATATTTTGTTTAGTAATGC+AGG - chr7.1:4535615-4535634 MS.gene050431:CDS 25.0%
AGTTCTCATGCTAATTTGAA+GGG - chr7.1:4535993-4536012 MS.gene050431:CDS 30.0%
ATATCATCATTGTGATGTCA+GGG - chr7.1:4535536-4535555 MS.gene050431:CDS 30.0%
TAGTTCTCATGCTAATTTGA+AGG - chr7.1:4535992-4536011 MS.gene050431:CDS 30.0%
TTATATCAGTGGTCATAACT+TGG - chr7.1:4536079-4536098 MS.gene050431:intron 30.0%
! ACATCAAAACATGCTCTTTT+AGG - chr7.1:4535837-4535856 MS.gene050431:CDS 30.0%
! CATTTCACTTTGGAAAAACA+CGG - chr7.1:4535585-4535604 MS.gene050431:CDS 30.0%
! GTTAATAGTATATCCCCTTT+TGG - chr7.1:4535906-4535925 MS.gene050431:CDS 30.0%
ACTATGGCTACAAATGTTGT+TGG - chr7.1:4535693-4535712 MS.gene050431:CDS 35.0%
CATATCATCATTGTGATGTC+AGG - chr7.1:4535535-4535554 MS.gene050431:CDS 35.0%
CGTAAAGTTGCAGATTCAAT+AGG - chr7.1:4535498-4535517 MS.gene050431:CDS 35.0%
CTACTAGATTCAACTTCATG+AGG + chr7.1:4535972-4535991 None:intergenic 35.0%
GATGAAGCTGTTTATATCAG+TGG - chr7.1:4536068-4536087 MS.gene050431:intron 35.0%
GGAATAATAGGCTCTTTATC+TGG - chr7.1:4535636-4535655 MS.gene050431:CDS 35.0%
GTCATAACTTGGTTGTTGAT+GGG - chr7.1:4536090-4536109 MS.gene050431:intron 35.0%
GTGAAATTGTTTGCCGAAAA+TGG - chr7.1:4535435-4535454 MS.gene050431:CDS 35.0%
TAGTGCATATAATCGATCCA+CGG + chr7.1:4535770-4535789 None:intergenic 35.0%
TCATAACTTGGTTGTTGATG+GGG - chr7.1:4536091-4536110 MS.gene050431:intron 35.0%
TTGTAAGCTATACACGAAAG+AGG + chr7.1:4535942-4535961 None:intergenic 35.0%
! ATGACAAAATCTAGGTTGGA+GGG - chr7.1:4535363-4535382 MS.gene050431:CDS 35.0%
! TATGACAAAATCTAGGTTGG+AGG - chr7.1:4535362-4535381 MS.gene050431:CDS 35.0%
!! TTTGAAGGGTATTGTGTTGA+AGG - chr7.1:4536007-4536026 MS.gene050431:intron 35.0%
AAATCAGCTTGTGGAGAACT+TGG - chr7.1:4535867-4535886 MS.gene050431:CDS 40.0%
ATGGTGGCTAAAAAAATCCG+TGG - chr7.1:4535750-4535769 MS.gene050431:CDS 40.0%
GGTAAGGTGGCAATAATAAC+AGG - chr7.1:4535384-4535403 MS.gene050431:CDS 40.0%
GGTCATAACTTGGTTGTTGA+TGG - chr7.1:4536089-4536108 MS.gene050431:intron 40.0%
TGATGTCAGGGATGAAAAAC+AGG - chr7.1:4535548-4535567 MS.gene050431:CDS 40.0%
TGTTTCTTCACCAATTCCAC+TGG + chr7.1:4535415-4535434 None:intergenic 40.0%
! AAAATCTAGGTTGGAGGGTA+AGG - chr7.1:4535368-4535387 MS.gene050431:CDS 40.0%
! AGATGGAGTATTACGAACCA+CGG + chr7.1:4536123-4536142 None:intergenic 40.0%
! CATAACTTGGTTGTTGATGG+GGG - chr7.1:4536092-4536111 MS.gene050431:intron 40.0%
!!! ACGGATTTTTTTAGCCACCA+TGG + chr7.1:4535751-4535770 None:intergenic 40.0%
ACTAGCGTTGCAGCTTCTAT+TGG - chr7.1:4535789-4535808 MS.gene050431:CDS 45.0%
ATAATAACAGGTGCAGCCAG+TGG - chr7.1:4535396-4535415 MS.gene050431:CDS 45.0%
ATTGGTGGAACAGGTCCTAA+TGG - chr7.1:4535807-4535826 MS.gene050431:CDS 45.0%
GGACTTGTGAAATCAGCTTG+TGG - chr7.1:4535858-4535877 MS.gene050431:CDS 45.0%
! AGGTGTTGCAACTCCAAAAG+GGG + chr7.1:4535922-4535941 None:intergenic 45.0%
! TACATATCAGGCGTTGCAGA+TGG + chr7.1:4536140-4536159 None:intergenic 45.0%
! TGTGGAGAACTTGGTGGTTA+TGG - chr7.1:4535876-4535895 MS.gene050431:CDS 45.0%
!! AGAGGTGTTGCAACTCCAAA+AGG + chr7.1:4535924-4535943 None:intergenic 45.0%
!! GAGGTGTTGCAACTCCAAAA+GGG + chr7.1:4535923-4535942 None:intergenic 45.0%
AGCGTTGCAGCTTCTATTGG+TGG - chr7.1:4535792-4535811 MS.gene050431:CDS 50.0%
GCAGCTTCTATTGGTGGAAC+AGG - chr7.1:4535798-4535817 MS.gene050431:CDS 50.0%
TCAGCTTGTGGAGAACTTGG+TGG - chr7.1:4535870-4535889 MS.gene050431:CDS 50.0%
! ATCTAGGTTGGAGGGTAAGG+TGG - chr7.1:4535371-4535390 MS.gene050431:CDS 50.0%
ACAGGTGCAGCCAGTGGAAT+TGG - chr7.1:4535402-4535421 MS.gene050431:CDS 55.0%
! TGTTGATGGGGGTTTCTCCG+TGG - chr7.1:4536103-4536122 MS.gene050431:intron 55.0%
TAAGCATGCTGCGCGCGCCA+TGG - chr7.1:4535731-4535750 MS.gene050431:CDS 65.0%
GCATGCTGCGCGCGCCATGG+TGG - chr7.1:4535734-4535753 MS.gene050431:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4535241 4536160 4535241 ID=MS.gene050431
chr7.1 mRNA 4535241 4536160 4535241 ID=MS.gene050431.t1;Parent=MS.gene050431
chr7.1 exon 4536150 4536160 4536150 ID=MS.gene050431.t1.exon1;Parent=MS.gene050431.t1
chr7.1 CDS 4536150 4536160 4536150 ID=cds.MS.gene050431.t1;Parent=MS.gene050431.t1
chr7.1 exon 4535241 4536024 4535241 ID=MS.gene050431.t1.exon2;Parent=MS.gene050431.t1
chr7.1 CDS 4535241 4536024 4535241 ID=cds.MS.gene050431.t1;Parent=MS.gene050431.t1
Gene Sequence

>MS.gene050431

ATGAAGCAAAGGTATCCTATAGTTTGATATATGTCTCTATAGTTTTGTTCTGTTTCCTTATTTTTACTTGTCTGCTTAATTTTGATTAATTGACTTTATTTTATTTTCTTGCATAATATATTATGACAAAATCTAGGTTGGAGGGTAAGGTGGCAATAATAACAGGTGCAGCCAGTGGAATTGGTGAAGAAACAGTGAAATTGTTTGCCGAAAATGGAGCATTTGTTATTGCAGTAGACATTCAAGATAAATTGGGTCGTAAAGTTGCAGATTCAATAGGCTCAGATAAAGTAACATATCATCATTGTGATGTCAGGGATGAAAAACAGGTCGAAGAAACAATTCATTTCACTTTGGAAAAACACGGTTGCATCGATATTTTGTTTAGTAATGCAGGAATAATAGGCTCTTTATCTGGAATACTTGATCTTGATTTGAATGAATTTGAGAAAACTATGGCTACAAATGTTGTTGGTGCAGCTGCTACAATTAAGCATGCTGCGCGCGCCATGGTGGCTAAAAAAATCCGTGGATCGATTATATGCACTACTAGCGTTGCAGCTTCTATTGGTGGAACAGGTCCTAATGGTTATACTACATCAAAACATGCTCTTTTAGGACTTGTGAAATCAGCTTGTGGAGAACTTGGTGGTTATGGAATTAGAGTTAATAGTATATCCCCTTTTGGAGTTGCAACACCTCTTTCGTGTATAGCTTACAATCTTGAACCTCATGAAGTTGAATCTAGTAGTAGTTCTCATGCTAATTTGAAGGGTATTGTGTTGAAGGCTAAGCATGTTGCAGAAGCAGCTTTGTTTCTTGCTTCTGATGAAGCTGTTTATATCAGTGGTCATAACTTGGTTGTTGATGGGGGTTTCTCCGTGGTTCGTAATACTCCATCTGCAACGCCTGATATGTAG
Protein sequence

>MS.gene050431.t1

MKQRLEGKVAIITGAASGIGEETVKLFAENGAFVIAVDIQDKLGRKVADSIGSDKVTYHHCDVRDEKQVEETIHFTLEKHGCIDILFSNAGIIGSLSGILDLDLNEFEKTMATNVVGAAATIKHAARAMVAKKIRGSIICTTSVAASIGGTGPNGYTTSKHALLGLVKSACGELGGYGIRVNSISPFGVATPLSCIAYNLEPHEVESSSSSHANLKGIVLKAKHVAEAALFLASDEAVYISGHNLVVDGGFSVVRNTPSATPDM