Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070437.t1 | RHN66402.1 | 92.6 | 269 | 19 | 1 | 1 | 268 | 68 | 336 | 5.50E-127 | 463.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070437.t1 | P09444 | 50.2 | 269 | 120 | 4 | 1 | 265 | 1 | 259 | 1.7e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070437.t1 | G7IZL9 | 92.6 | 269 | 19 | 1 | 1 | 268 | 1 | 269 | 4.0e-127 | 463.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene070437 | 0.814729 | 1.33E-51 | -1.69E-46 |
| MS.gene04919 | MS.gene070437 | 0.810204 | 1.29E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene070437 | 0.832659 | 8.33E-56 | -1.69E-46 |
| MS.gene049283 | MS.gene070437 | 0.822109 | 2.82E-53 | -1.69E-46 |
| MS.gene049419 | MS.gene070437 | -0.805067 | 1.60E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene070437 | 0.830595 | 2.69E-55 | -1.69E-46 |
| MS.gene049680 | MS.gene070437 | 0.82288 | 1.87E-53 | -1.69E-46 |
| MS.gene050414 | MS.gene070437 | 0.825034 | 5.84E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene070437 | 0.828824 | 7.25E-55 | -1.69E-46 |
| MS.gene050945 | MS.gene070437 | 0.83288 | 7.34E-56 | -1.69E-46 |
| MS.gene050955 | MS.gene070437 | 0.803368 | 3.60E-49 | -1.69E-46 |
| MS.gene051043 | MS.gene070437 | 0.818207 | 2.21E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene070437 | 0.814379 | 1.59E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene070437 | 0.818728 | 1.68E-52 | -1.69E-46 |
| MS.gene051365 | MS.gene070437 | 0.80297 | 4.36E-49 | -1.69E-46 |
| MS.gene051832 | MS.gene070437 | 0.80679 | 6.93E-50 | -1.69E-46 |
| MS.gene051902 | MS.gene070437 | 0.811268 | 7.62E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene070437 | 0.820451 | 6.81E-53 | -1.69E-46 |
| MS.gene052296 | MS.gene070437 | 0.801333 | 9.46E-49 | -1.69E-46 |
| MS.gene052793 | MS.gene070437 | 0.804525 | 2.07E-49 | -1.69E-46 |
| MS.gene053272 | MS.gene070437 | -0.801159 | 1.03E-48 | -1.69E-46 |
| MS.gene053931 | MS.gene070437 | 0.837128 | 6.24E-57 | -1.69E-46 |
| MS.gene054403 | MS.gene070437 | 0.805717 | 1.17E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene070437 | 0.81175 | 5.99E-51 | -1.69E-46 |
| MS.gene05689 | MS.gene070437 | 0.811917 | 5.51E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene070437 | 0.824326 | 8.58E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene070437 | 0.810851 | 9.39E-51 | -1.69E-46 |
| MS.gene057622 | MS.gene070437 | 0.80748 | 4.95E-50 | -1.69E-46 |
| MS.gene057694 | MS.gene070437 | 0.829625 | 4.64E-55 | -1.69E-46 |
| MS.gene057705 | MS.gene070437 | 0.804871 | 1.75E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene070437 | 0.807068 | 6.05E-50 | -1.69E-46 |
| MS.gene057890 | MS.gene070437 | -0.801523 | 8.65E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene070437 | 0.800676 | 1.29E-48 | -1.69E-46 |
| MS.gene058159 | MS.gene070437 | 0.809051 | 2.29E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene070437 | 0.817463 | 3.26E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene070437 | 0.813454 | 2.54E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene070437 | 0.837829 | 4.13E-57 | -1.69E-46 |
| MS.gene05985 | MS.gene070437 | -0.824299 | 8.70E-54 | -1.69E-46 |
| MS.gene059901 | MS.gene070437 | -0.802477 | 5.51E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene070437 | 0.812909 | 3.34E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene070437 | 0.811211 | 7.84E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene070437 | 0.831411 | 1.69E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene070437 | 0.823887 | 1.09E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene070437 | 0.827222 | 1.76E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene070437 | 0.80615 | 9.46E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070437.t1 | MTR_3g034660 | 92.565 | 269 | 19 | 1 | 1 | 268 | 1 | 269 | 1.02e-168 | 467 |
| MS.gene070437.t1 | MTR_1g072090 | 49.077 | 271 | 125 | 5 | 1 | 268 | 1 | 261 | 1.56e-68 | 213 |
| MS.gene070437.t1 | MTR_1g103620 | 47.940 | 267 | 125 | 5 | 1 | 266 | 1 | 254 | 1.18e-67 | 211 |
| MS.gene070437.t1 | MTR_1g072090 | 50.000 | 214 | 99 | 4 | 1 | 211 | 1 | 209 | 5.21e-57 | 182 |
| MS.gene070437.t1 | MTR_1g081760 | 41.455 | 275 | 116 | 5 | 1 | 267 | 1 | 238 | 1.54e-41 | 143 |
| MS.gene070437.t1 | MTR_2g076230 | 39.416 | 137 | 76 | 3 | 1 | 137 | 43 | 172 | 3.19e-23 | 94.7 |
| MS.gene070437.t1 | MTR_2g076230 | 39.416 | 137 | 76 | 3 | 1 | 137 | 43 | 172 | 6.42e-23 | 94.7 |
| MS.gene070437.t1 | MTR_2g076220 | 40.336 | 119 | 65 | 2 | 1 | 119 | 1 | 113 | 3.94e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070437.t1 | AT3G22500 | 46.038 | 265 | 129 | 5 | 1 | 265 | 1 | 251 | 7.16e-57 | 183 |
| MS.gene070437.t1 | AT3G22490 | 43.542 | 271 | 126 | 5 | 5 | 266 | 6 | 258 | 3.59e-56 | 181 |
| MS.gene070437.t1 | AT1G03120 | 49.618 | 131 | 61 | 1 | 137 | 267 | 56 | 181 | 2.03e-29 | 110 |
| MS.gene070437.t1 | AT5G27980 | 53.465 | 101 | 47 | 0 | 139 | 239 | 68 | 168 | 3.32e-25 | 99.4 |
| MS.gene070437.t1 | AT5G53260 | 42.188 | 128 | 69 | 1 | 140 | 267 | 50 | 172 | 1.42e-18 | 81.3 |
| MS.gene070437.t1 | AT5G53270 | 42.063 | 126 | 68 | 1 | 140 | 265 | 31 | 151 | 3.13e-16 | 74.3 |
| MS.gene070437.t1 | AT1G03120 | 53.333 | 75 | 35 | 0 | 137 | 211 | 56 | 130 | 1.32e-14 | 69.3 |
Find 87 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTTTGTGCCTATGAATA+TGG | 0.166083 | 3.3:-25503368 | MS.gene070437:CDS |
| CACCGTATTTGATGGGTTCT+TGG | 0.267760 | 3.3:+25503692 | None:intergenic |
| CCATGGTTCTTCATGTTTCA+TGG | 0.274279 | 3.3:+25501684 | None:intergenic |
| GTGTGAGGCCTGGCGGTGTC+GGG | 0.275992 | 3.3:-25503204 | MS.gene070437:CDS |
| TGTGTGAGGCCTGGCGGTGT+CGG | 0.283706 | 3.3:-25503205 | MS.gene070437:CDS |
| ATGGCTGCAGCAGGACTTCC+TGG | 0.305505 | 3.3:+25503568 | None:intergenic |
| CTCTCAACAGCCACGCTAAT+CGG | 0.330105 | 3.3:-25503159 | MS.gene070437:CDS |
| CCATCAGTGCTGCTGAGATT+AGG | 0.336376 | 3.3:-25503243 | MS.gene070437:CDS |
| GCCATGTTAGCGGCCACTTG+TGG | 0.347945 | 3.3:+25503625 | None:intergenic |
| CATCAGTGCTGCTGAGATTA+GGG | 0.357619 | 3.3:-25503242 | MS.gene070437:CDS |
| CCATGTTAGCGGCCACTTGT+GGG | 0.359786 | 3.3:+25503626 | None:intergenic |
| AAAACTTTCTGATGTGTTAA+CGG | 0.360481 | 3.3:-25503122 | MS.gene070437:intron |
| GCCGCTTGCATGGCTGCAGC+AGG | 0.364075 | 3.3:+25503559 | None:intergenic |
| CACTTTGTGCCTATGAATAT+GGG | 0.375801 | 3.3:-25503367 | MS.gene070437:CDS |
| CGGATAAGCTGGTGGCGGAC+AGG | 0.381930 | 3.3:-25501838 | MS.gene070437:CDS |
| GCCTGGCGGTGTCGGGGCGA+CGG | 0.386365 | 3.3:-25503197 | MS.gene070437:CDS |
| GCCGTCGCCCCGACACCGCC+AGG | 0.387638 | 3.3:+25503196 | None:intergenic |
| GAAAACATCACCGTATTTGA+TGG | 0.395353 | 3.3:+25503684 | None:intergenic |
| GTTAATCTCTTCTTGAAGCC+TGG | 0.405950 | 3.3:+25503714 | None:intergenic |
| GCGGTTGATGGTCAGATTAT+AGG | 0.409172 | 3.3:-25503412 | MS.gene070437:CDS |
| CTTCTTGAAGCCTGGTTGGT+TGG | 0.415684 | 3.3:+25503722 | None:intergenic |
| GTTGTGACGGAGGCGGTTGA+TGG | 0.427340 | 3.3:-25503424 | MS.gene070437:CDS |
| GAAGCCTGGTTGGTTGGCCA+TGG | 0.430327 | 3.3:+25503728 | None:intergenic |
| GCCTATGAATATGGGCTTTG+CGG | 0.430604 | 3.3:-25503359 | MS.gene070437:CDS |
| GTTAGAAGTGGCGGGGATAT+CGG | 0.431798 | 3.3:-25503302 | MS.gene070437:CDS |
| ATAGGCACAAAGTGCGCGTC+AGG | 0.451108 | 3.3:+25503376 | None:intergenic |
| ATCTCTTCTTGAAGCCTGGT+TGG | 0.457290 | 3.3:+25503718 | None:intergenic |
| GATATCGGTTGGTGATAAAC+CGG | 0.458559 | 3.3:-25503287 | MS.gene070437:CDS |
| GATCATTGCGGCCGCTTGCA+TGG | 0.469213 | 3.3:+25503549 | None:intergenic |
| TCGTCATGGTATAGCAGAAA+TGG | 0.469856 | 3.3:-25503497 | MS.gene070437:CDS |
| GGATAAGCTGGTGGCGGACA+GGG | 0.474816 | 3.3:-25501837 | MS.gene070437:CDS |
| GGAGAGAGGTGTGTGAGGCC+TGG | 0.480169 | 3.3:-25503214 | MS.gene070437:CDS |
| CCCACAAGTGGCCGCTAACA+TGG | 0.487849 | 3.3:-25503626 | MS.gene070437:CDS |
| CCTAATCTCAGCAGCACTGA+TGG | 0.492034 | 3.3:+25503243 | None:intergenic |
| AACCAAGAACCCATCAAATA+CGG | 0.492643 | 3.3:-25503694 | MS.gene070437:CDS |
| ATAGGATGCGGCGGATAAGC+TGG | 0.493945 | 3.3:-25501849 | MS.gene070437:intron |
| TTCTGCTGCAGCCATGTTAG+CGG | 0.499845 | 3.3:+25503615 | None:intergenic |
| TCCTGCTGCAGCCATGCAAG+CGG | 0.501385 | 3.3:-25503560 | MS.gene070437:CDS |
| GCCGCAAAGCCCATATTCAT+AGG | 0.505709 | 3.3:+25503358 | None:intergenic |
| GAGCTTAGCTGTTGTGGCCA+TGG | 0.506595 | 3.3:+25501709 | None:intergenic |
| CAATGGCTCGTTGGTCGTCA+TGG | 0.509926 | 3.3:-25503511 | MS.gene070437:CDS |
| TGTGAGGCCTGGCGGTGTCG+GGG | 0.521665 | 3.3:-25503203 | MS.gene070437:CDS |
| AAAACATCACCGTATTTGAT+GGG | 0.527182 | 3.3:+25503685 | None:intergenic |
| TGGTGGAATAGCTGCATCCA+TGG | 0.532996 | 3.3:-25501726 | MS.gene070437:CDS |
| GGAGAGGCGTTAGAAGTGGC+GGG | 0.533131 | 3.3:-25503310 | MS.gene070437:CDS |
| AGGCCTCACACACCTCTCTC+CGG | 0.534996 | 3.3:+25503216 | None:intergenic |
| TGCCGACCGTCGTGTTGTGA+CGG | 0.537709 | 3.3:-25503437 | MS.gene070437:CDS |
| ATGGTTGAGCTTAGCTGTTG+TGG | 0.554386 | 3.3:+25501703 | None:intergenic |
| TCAGCATCGTTCTGATCCAC+CGG | 0.561215 | 3.3:+25503268 | None:intergenic |
| GCTGCTGAGATTAGGGCTAC+CGG | 0.568023 | 3.3:-25503235 | MS.gene070437:CDS |
| CATGTTAGCGGCCACTTGTG+GGG | 0.571385 | 3.3:+25503627 | None:intergenic |
| CTCCGTCACAACACGACGGT+CGG | 0.572167 | 3.3:+25503435 | None:intergenic |
| CCGTCGTGTTGTGACGGAGG+CGG | 0.578384 | 3.3:-25503431 | MS.gene070437:CDS |
| GCATCTGCACAATGGCTCGT+TGG | 0.578751 | 3.3:-25503520 | MS.gene070437:CDS |
| GATGACGATCCGATCACTAT+CGG | 0.581623 | 3.3:-25503331 | MS.gene070437:CDS |
| CGGAGAGGCGTTAGAAGTGG+CGG | 0.590961 | 3.3:-25503311 | MS.gene070437:CDS |
| AACGCCTCTCCGATAGTGAT+CGG | 0.591968 | 3.3:+25503322 | None:intergenic |
| TGAGCCATGGCCAACCAACC+AGG | 0.605511 | 3.3:-25503732 | MS.gene070437:CDS |
| TGAGACAATCTCCCCACAAG+TGG | 0.610093 | 3.3:-25503638 | MS.gene070437:CDS |
| GAAGTGGCGGGGATATCGGT+TGG | 0.611879 | 3.3:-25503298 | MS.gene070437:CDS |
| TGCGGCGGATAAGCTGGTGG+CGG | 0.616093 | 3.3:-25501843 | MS.gene070437:CDS |
| TATCGGAGAGGCGTTAGAAG+TGG | 0.617007 | 3.3:-25503314 | MS.gene070437:CDS |
| TAAGCTGGTGGCGGACAGGG+CGG | 0.617043 | 3.3:-25501834 | MS.gene070437:CDS |
| AGATTAGGGCTACCGGAGAG+AGG | 0.625834 | 3.3:-25503228 | MS.gene070437:CDS |
| ATGGATGCAGCTATTCCACC+AGG | 0.630413 | 3.3:+25501728 | None:intergenic |
| ATGATGAATATTGCTGAACC+TGG | 0.635512 | 3.3:-25501746 | MS.gene070437:CDS |
| ATGAATATTGCTGAACCTGG+TGG | 0.635922 | 3.3:-25501743 | MS.gene070437:CDS |
| ATCGGTTGGTGATAAACCGG+TGG | 0.639207 | 3.3:-25503284 | MS.gene070437:CDS |
| AAACACAACACAATGAGCCA+TGG | 0.639243 | 3.3:-25503745 | None:intergenic |
| CTACCGGAGAGAGGTGTGTG+AGG | 0.640214 | 3.3:-25503219 | MS.gene070437:CDS |
| TGTATATATATAGGATGCGG+CGG | 0.642444 | 3.3:-25501858 | MS.gene070437:intron |
| ATTAGCGTGGCTGTTGAGAG+CGG | 0.645143 | 3.3:+25503162 | None:intergenic |
| CGACCGTCGTGTTGTGACGG+AGG | 0.646821 | 3.3:-25503434 | MS.gene070437:CDS |
| TCAGATTATAGGACGGCGCG+TGG | 0.654489 | 3.3:-25503401 | MS.gene070437:CDS |
| TCAACGAGGCATCTGCACAA+TGG | 0.666804 | 3.3:-25503528 | MS.gene070437:CDS |
| TCTCTTCAATCCGATTAGCG+TGG | 0.674286 | 3.3:+25503149 | None:intergenic |
| AGAAGCTGTGTATGATGCAG+AGG | 0.680635 | 3.3:-25501795 | MS.gene070437:CDS |
| GAGAGGCGTTAGAAGTGGCG+GGG | 0.680725 | 3.3:-25503309 | MS.gene070437:CDS |
| AGATGCCTCGTTGATCATTG+CGG | 0.682722 | 3.3:+25503537 | None:intergenic |
| TTGATGGTCAGATTATAGGA+CGG | 0.688715 | 3.3:-25503408 | MS.gene070437:CDS |
| AATATTCATCATTTGCTGTG+TGG | 0.693485 | 3.3:+25501757 | None:intergenic |
| GAGAGGTGTGTGAGGCCTGG+CGG | 0.694862 | 3.3:-25503211 | MS.gene070437:CDS |
| GGATGCGGCGGATAAGCTGG+TGG | 0.723628 | 3.3:-25501846 | MS.gene070437:CDS |
| CGATCCGATCACTATCGGAG+AGG | 0.731692 | 3.3:-25503326 | MS.gene070437:CDS |
| AGCGGCCGCAATGATCAACG+AGG | 0.739216 | 3.3:-25503542 | MS.gene070437:CDS |
| CCGCCTCCGTCACAACACGA+CGG | 0.744880 | 3.3:+25503431 | None:intergenic |
| TGTTCGTGTGACAGAAACAA+CGG | 0.764152 | 3.3:-25503461 | MS.gene070437:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAAGATTATAATTGATT+AGG | - | chr3.3:25502383-25502402 | MS.gene070437:intron | 15.0% |
| !! | TAACTAAAATATATGTTGAA+GGG | - | chr3.3:25503282-25503301 | MS.gene070437:CDS | 15.0% |
| !! | TTAACTAAAATATATGTTGA+AGG | - | chr3.3:25503281-25503300 | MS.gene070437:CDS | 15.0% |
| !! | TTTAACTAACTAATCAAAAA+AGG | + | chr3.3:25502410-25502429 | None:intergenic | 15.0% |
| !!! | AATTTTGTGAAATTGTAATA+TGG | - | chr3.3:25503257-25503276 | MS.gene070437:CDS | 15.0% |
| !!! | CATGTTATTATTATGTTTTT+TGG | - | chr3.3:25502616-25502635 | MS.gene070437:intron | 15.0% |
| !! | TGTAGAATTGAAATTTCATA+TGG | - | chr3.3:25503395-25503414 | MS.gene070437:CDS | 20.0% |
| !!! | AAATATTACAAAGTACTCAT+TGG | + | chr3.3:25503539-25503558 | None:intergenic | 20.0% |
| !!! | GAGTACTTTGTAATATTTTT+TGG | - | chr3.3:25503541-25503560 | MS.gene070437:CDS | 20.0% |
| !!! | TACTTTGTAATATTTTTTGG+TGG | - | chr3.3:25503544-25503563 | MS.gene070437:CDS | 20.0% |
| !!! | TGATTAGTTAGTTAAATACT+TGG | - | chr3.3:25502414-25502433 | MS.gene070437:intron | 20.0% |
| !!! | TTTATTTTTTAGTGTGTGTT+TGG | - | chr3.3:25502770-25502789 | MS.gene070437:intron | 20.0% |
| ! | AAAACTTTCTGATGTGTTAA+CGG | - | chr3.3:25502305-25502324 | MS.gene070437:intron | 25.0% |
| ! | CCATATATAAAGCTACAAAT+TGG | - | chr3.3:25502681-25502700 | MS.gene070437:intron | 25.0% |
| ! | TGTTTGGTATTATGGATTTA+CGG | - | chr3.3:25502786-25502805 | MS.gene070437:intron | 25.0% |
| ! | TTAGTTAGTTAAATACTTGG+AGG | - | chr3.3:25502417-25502436 | MS.gene070437:intron | 25.0% |
| ! | TTGATGAGCAAAATTGATAT+AGG | - | chr3.3:25503225-25503244 | MS.gene070437:CDS | 25.0% |
| !!! | CCAATTTGTAGCTTTATATA+TGG | + | chr3.3:25502684-25502703 | None:intergenic | 25.0% |
| AAAACATCACCGTATTTGAT+GGG | + | chr3.3:25501745-25501764 | None:intergenic | 30.0% | |
| AAGCACTTATAGTGATTGTA+AGG | - | chr3.3:25502450-25502469 | MS.gene070437:intron | 30.0% | |
| ATGAGCAAAATTGATATAGG+TGG | - | chr3.3:25503228-25503247 | MS.gene070437:CDS | 30.0% | |
| GAAACCATATATAAGCAACT+CGG | - | chr3.3:25502994-25503013 | MS.gene070437:intron | 30.0% | |
| GTAGTGTTTGTTTGGTATTA+CGG | - | chr3.3:25503054-25503073 | MS.gene070437:intron | 30.0% | |
| GTGTGTATATATATAGGATG+CGG | - | chr3.3:25503566-25503585 | MS.gene070437:CDS | 30.0% | |
| TGTTTGGTACTCATTGTATT+TGG | - | chr3.3:25503027-25503046 | MS.gene070437:intron | 30.0% | |
| TTAGTGTGTGTTTGGTATTA+TGG | - | chr3.3:25502778-25502797 | MS.gene070437:intron | 30.0% | |
| !! | AATATTCATCATTTGCTGTG+TGG | + | chr3.3:25503673-25503692 | None:intergenic | 30.0% |
| !! | GTGTAGCTTTTGAAAAATCA+CGG | - | chr3.3:25503128-25503147 | MS.gene070437:CDS | 30.0% |
| !! | TTGGTGGTGTGTATATATAT+AGG | - | chr3.3:25503560-25503579 | MS.gene070437:CDS | 30.0% |
| AACCAAGAACCCATCAAATA+CGG | - | chr3.3:25501733-25501752 | MS.gene070437:CDS | 35.0% | |
| AAGCAAAGCTAGAATCAAAG+TGG | + | chr3.3:25503183-25503202 | None:intergenic | 35.0% | |
| ATGATGAATATTGCTGAACC+TGG | - | chr3.3:25503681-25503700 | MS.gene070437:CDS | 35.0% | |
| CACTTTGTGCCTATGAATAT+GGG | - | chr3.3:25502060-25502079 | MS.gene070437:intron | 35.0% | |
| GAAAACATCACCGTATTTGA+TGG | + | chr3.3:25501746-25501765 | None:intergenic | 35.0% | |
| GATATATACTAACGTGCGTT+TGG | + | chr3.3:25502716-25502735 | None:intergenic | 35.0% | |
| GTATCAGTTTGTCAGAATCT+CGG | + | chr3.3:25503161-25503180 | None:intergenic | 35.0% | |
| GTGTAGCTTCTACAATATCA+CGG | + | chr3.3:25502839-25502858 | None:intergenic | 35.0% | |
| TAATCAACTTAGTGCGTGTT+TGG | - | chr3.3:25502883-25502902 | MS.gene070437:intron | 35.0% | |
| TCTCTGCTGGAAAATGTAAT+TGG | + | chr3.3:25503457-25503476 | None:intergenic | 35.0% | |
| TCTTCGTGTGTTTGGTATTA+TGG | - | chr3.3:25502908-25502927 | MS.gene070437:intron | 35.0% | |
| TGGTATTATGGATTTACGGT+GGG | - | chr3.3:25502790-25502809 | MS.gene070437:intron | 35.0% | |
| TGTATATATATAGGATGCGG+CGG | - | chr3.3:25503569-25503588 | MS.gene070437:CDS | 35.0% | |
| TTGGTATCGTAGTGTTTGTT+TGG | - | chr3.3:25503046-25503065 | MS.gene070437:intron | 35.0% | |
| TTGGTATTATGGATTTACGG+TGG | - | chr3.3:25502789-25502808 | MS.gene070437:intron | 35.0% | |
| ! | ACCTAGTTAGTACTCTTTTG+CGG | + | chr3.3:25503494-25503513 | None:intergenic | 35.0% |
| ! | CAGCAGAATTCAACGTTTTA+GGG | - | chr3.3:25501827-25501846 | MS.gene070437:CDS | 35.0% |
| ! | TAAGTGTCTGTTCGTTTTAG+TGG | + | chr3.3:25502742-25502761 | None:intergenic | 35.0% |
| ! | TTGATGGTCAGATTATAGGA+CGG | - | chr3.3:25502019-25502038 | MS.gene070437:intron | 35.0% |
| !! | ATATATAAGCAACTCGGTGT+CGG | - | chr3.3:25503000-25503019 | MS.gene070437:intron | 35.0% |
| ACGACAGATAACTGTGATTC+TGG | + | chr3.3:25503088-25503107 | None:intergenic | 40.0% | |
| ACGGTAGATGACCGTAATTA+TGG | + | chr3.3:25502820-25502839 | None:intergenic | 40.0% | |
| ATGAATATTGCTGAACCTGG+TGG | - | chr3.3:25503684-25503703 | MS.gene070437:CDS | 40.0% | |
| CGGTGGGTATACCATAATTA+CGG | - | chr3.3:25502806-25502825 | MS.gene070437:intron | 40.0% | |
| CGTGTGTTTGGTATTATGGT+AGG | - | chr3.3:25502912-25502931 | MS.gene070437:intron | 40.0% | |
| CTTTCATGACTAATCTCTGC+TGG | + | chr3.3:25503470-25503489 | None:intergenic | 40.0% | |
| GACACCGAGTTGCTTATATA+TGG | + | chr3.3:25503001-25503020 | None:intergenic | 40.0% | |
| GAGTACTAACTAGGTTGTCT+AGG | - | chr3.3:25503499-25503518 | MS.gene070437:CDS | 40.0% | |
| GCACTTTGTGCCTATGAATA+TGG | - | chr3.3:25502059-25502078 | MS.gene070437:intron | 40.0% | |
| GTTAATCTCTTCTTGAAGCC+TGG | + | chr3.3:25501716-25501735 | None:intergenic | 40.0% | |
| GTTTGGTATCTTCGTGTGTT+TGG | - | chr3.3:25502900-25502919 | MS.gene070437:intron | 40.0% | |
| TCGTCATGGTATAGCAGAAA+TGG | - | chr3.3:25501930-25501949 | MS.gene070437:intron | 40.0% | |
| TGTTCGTGTGACAGAAACAA+CGG | - | chr3.3:25501966-25501985 | MS.gene070437:intron | 40.0% | |
| ! | GCAGCAGAATTCAACGTTTT+AGG | - | chr3.3:25501826-25501845 | MS.gene070437:CDS | 40.0% |
| !! | GATATCGGTTGGTGATAAAC+CGG | - | chr3.3:25502140-25502159 | MS.gene070437:intron | 40.0% |
| !! | TCCGCAAAAGAGTACTAACT+AGG | - | chr3.3:25503490-25503509 | MS.gene070437:CDS | 40.0% |
| !! | TGTCTGTTCGTTTTAGTGGT+AGG | + | chr3.3:25502738-25502757 | None:intergenic | 40.0% |
| AGAAGCTGTGTATGATGCAG+AGG | - | chr3.3:25503632-25503651 | MS.gene070437:CDS | 45.0% | |
| AGATGCCTCGTTGATCATTG+CGG | + | chr3.3:25501893-25501912 | None:intergenic | 45.0% | |
| ATCTCTTCTTGAAGCCTGGT+TGG | + | chr3.3:25501712-25501731 | None:intergenic | 45.0% | |
| ATGGTTGAGCTTAGCTGTTG+TGG | + | chr3.3:25503727-25503746 | None:intergenic | 45.0% | |
| GATGACGATCCGATCACTAT+CGG | - | chr3.3:25502096-25502115 | MS.gene070437:intron | 45.0% | |
| GCCTATGAATATGGGCTTTG+CGG | - | chr3.3:25502068-25502087 | MS.gene070437:intron | 45.0% | |
| TCTCTTCAATCCGATTAGCG+TGG | + | chr3.3:25502281-25502300 | None:intergenic | 45.0% | |
| TGGTAGGTATGCCAGAATCA+CGG | - | chr3.3:25502928-25502947 | MS.gene070437:intron | 45.0% | |
| ! | CATCAGTGCTGCTGAGATTA+GGG | - | chr3.3:25502185-25502204 | MS.gene070437:intron | 45.0% |
| ! | GGTGATGTTTTCAACGTCTC+TGG | - | chr3.3:25501754-25501773 | MS.gene070437:CDS | 45.0% |
| !! | CACCGTATTTGATGGGTTCT+TGG | + | chr3.3:25501738-25501757 | None:intergenic | 45.0% |
| !! | GCGGTTGATGGTCAGATTAT+AGG | - | chr3.3:25502015-25502034 | MS.gene070437:intron | 45.0% |
| AACGCCTCTCCGATAGTGAT+CGG | + | chr3.3:25502108-25502127 | None:intergenic | 50.0% | |
| ACGACAGATGACCGTGATTC+TGG | + | chr3.3:25502942-25502961 | None:intergenic | 50.0% | |
| ATGGATGCAGCTATTCCACC+AGG | + | chr3.3:25503702-25503721 | None:intergenic | 50.0% | |
| ATTAGCGTGGCTGTTGAGAG+CGG | + | chr3.3:25502268-25502287 | None:intergenic | 50.0% | |
| CTCTCAACAGCCACGCTAAT+CGG | - | chr3.3:25502268-25502287 | MS.gene070437:intron | 50.0% | |
| CTTCTTGAAGCCTGGTTGGT+TGG | + | chr3.3:25501708-25501727 | None:intergenic | 50.0% | |
| GCCGCAAAGCCCATATTCAT+AGG | + | chr3.3:25502072-25502091 | None:intergenic | 50.0% | |
| TCAGCATCGTTCTGATCCAC+CGG | + | chr3.3:25502162-25502181 | None:intergenic | 50.0% | |
| TGAGACAATCTCCCCACAAG+TGG | - | chr3.3:25501789-25501808 | MS.gene070437:CDS | 50.0% | |
| TGGTGGAATAGCTGCATCCA+TGG | - | chr3.3:25503701-25503720 | MS.gene070437:CDS | 50.0% | |
| TTCTGCTGCAGCCATGTTAG+CGG | + | chr3.3:25501815-25501834 | None:intergenic | 50.0% | |
| ! | CCATCAGTGCTGCTGAGATT+AGG | - | chr3.3:25502184-25502203 | MS.gene070437:intron | 50.0% |
| ! | CCTAATCTCAGCAGCACTGA+TGG | + | chr3.3:25502187-25502206 | None:intergenic | 50.0% |
| ! | GTTAGAAGTGGCGGGGATAT+CGG | - | chr3.3:25502125-25502144 | MS.gene070437:intron | 50.0% |
| ! | TCAACGAGGCATCTGCACAA+TGG | - | chr3.3:25501899-25501918 | MS.gene070437:intron | 50.0% |
| !! | ATCGGTTGGTGATAAACCGG+TGG | - | chr3.3:25502143-25502162 | MS.gene070437:intron | 50.0% |
| !! | TATCGGAGAGGCGTTAGAAG+TGG | - | chr3.3:25502113-25502132 | MS.gene070437:intron | 50.0% |
| !!! | GTTTTAGGGCATGCACAACC+AGG | - | chr3.3:25501841-25501860 | MS.gene070437:CDS | 50.0% |
| AGATTAGGGCTACCGGAGAG+AGG | - | chr3.3:25502199-25502218 | MS.gene070437:intron | 55.0% | |
| ATAGGATGCGGCGGATAAGC+TGG | - | chr3.3:25503578-25503597 | MS.gene070437:CDS | 55.0% | |
| ATAGGCACAAAGTGCGCGTC+AGG | + | chr3.3:25502054-25502073 | None:intergenic | 55.0% | |
| CAATGGCTCGTTGGTCGTCA+TGG | - | chr3.3:25501916-25501935 | MS.gene070437:intron | 55.0% | |
| CATGTTAGCGGCCACTTGTG+GGG | + | chr3.3:25501803-25501822 | None:intergenic | 55.0% | |
| CCATGTTAGCGGCCACTTGT+GGG | + | chr3.3:25501804-25501823 | None:intergenic | 55.0% | |
| CGATCCGATCACTATCGGAG+AGG | - | chr3.3:25502101-25502120 | MS.gene070437:intron | 55.0% | |
| GAGCTTAGCTGTTGTGGCCA+TGG | + | chr3.3:25503721-25503740 | None:intergenic | 55.0% | |
| GCATCTGCACAATGGCTCGT+TGG | - | chr3.3:25501907-25501926 | MS.gene070437:intron | 55.0% | |
| GCTGCTGAGATTAGGGCTAC+CGG | - | chr3.3:25502192-25502211 | MS.gene070437:intron | 55.0% | |
| TCAGATTATAGGACGGCGCG+TGG | - | chr3.3:25502026-25502045 | MS.gene070437:intron | 55.0% | |
| !! | ACTCGGTGTCGGTGTGTGTT+TGG | - | chr3.3:25503011-25503030 | MS.gene070437:intron | 55.0% |
| AGCGGCCGCAATGATCAACG+AGG | - | chr3.3:25501885-25501904 | MS.gene070437:intron | 60.0% | |
| AGGCCTCACACACCTCTCTC+CGG | + | chr3.3:25502214-25502233 | None:intergenic | 60.0% | |
| ATGGCTGCAGCAGGACTTCC+TGG | + | chr3.3:25501862-25501881 | None:intergenic | 60.0% | |
| CCCACAAGTGGCCGCTAACA+TGG | - | chr3.3:25501801-25501820 | MS.gene070437:CDS | 60.0% | |
| CTCCGTCACAACACGACGGT+CGG | + | chr3.3:25501995-25502014 | None:intergenic | 60.0% | |
| GATCATTGCGGCCGCTTGCA+TGG | + | chr3.3:25501881-25501900 | None:intergenic | 60.0% | |
| GCCATGTTAGCGGCCACTTG+TGG | + | chr3.3:25501805-25501824 | None:intergenic | 60.0% | |
| TCCTGCTGCAGCCATGCAAG+CGG | - | chr3.3:25501867-25501886 | MS.gene070437:intron | 60.0% | |
| TGAGCCATGGCCAACCAACC+AGG | - | chr3.3:25501695-25501714 | MS.gene070437:CDS | 60.0% | |
| TGCCGACCGTCGTGTTGTGA+CGG | - | chr3.3:25501990-25502009 | MS.gene070437:intron | 60.0% | |
| ! | CTACCGGAGAGAGGTGTGTG+AGG | - | chr3.3:25502208-25502227 | MS.gene070437:intron | 60.0% |
| ! | GAAGCCTGGTTGGTTGGCCA+TGG | + | chr3.3:25501702-25501721 | None:intergenic | 60.0% |
| ! | GAAGTGGCGGGGATATCGGT+TGG | - | chr3.3:25502129-25502148 | MS.gene070437:intron | 60.0% |
| ! | GTTGTGACGGAGGCGGTTGA+TGG | - | chr3.3:25502003-25502022 | MS.gene070437:intron | 60.0% |
| !! | CGGAGAGGCGTTAGAAGTGG+CGG | - | chr3.3:25502116-25502135 | MS.gene070437:intron | 60.0% |
| !! | GAGAGGCGTTAGAAGTGGCG+GGG | - | chr3.3:25502118-25502137 | MS.gene070437:intron | 60.0% |
| !! | GGAGAGGCGTTAGAAGTGGC+GGG | - | chr3.3:25502117-25502136 | MS.gene070437:intron | 60.0% |
| !! | GGATAAGCTGGTGGCGGACA+GGG | - | chr3.3:25503590-25503609 | MS.gene070437:CDS | 60.0% |
| CCGCCTCCGTCACAACACGA+CGG | + | chr3.3:25501999-25502018 | None:intergenic | 65.0% | |
| CGACCGTCGTGTTGTGACGG+AGG | - | chr3.3:25501993-25502012 | MS.gene070437:intron | 65.0% | |
| GGATGCGGCGGATAAGCTGG+TGG | - | chr3.3:25503581-25503600 | MS.gene070437:CDS | 65.0% | |
| TGCGGCGGATAAGCTGGTGG+CGG | - | chr3.3:25503584-25503603 | MS.gene070437:CDS | 65.0% | |
| TGTGTGAGGCCTGGCGGTGT+CGG | - | chr3.3:25502222-25502241 | MS.gene070437:intron | 65.0% | |
| ! | CCGTCGTGTTGTGACGGAGG+CGG | - | chr3.3:25501996-25502015 | MS.gene070437:intron | 65.0% |
| ! | GAGAGGTGTGTGAGGCCTGG+CGG | - | chr3.3:25502216-25502235 | MS.gene070437:intron | 65.0% |
| ! | GGAGAGAGGTGTGTGAGGCC+TGG | - | chr3.3:25502213-25502232 | MS.gene070437:intron | 65.0% |
| !! | CGGATAAGCTGGTGGCGGAC+AGG | - | chr3.3:25503589-25503608 | MS.gene070437:CDS | 65.0% |
| !! | TAAGCTGGTGGCGGACAGGG+CGG | - | chr3.3:25503593-25503612 | MS.gene070437:CDS | 65.0% |
| GCCGCTTGCATGGCTGCAGC+AGG | + | chr3.3:25501871-25501890 | None:intergenic | 70.0% | |
| GTGTGAGGCCTGGCGGTGTC+GGG | - | chr3.3:25502223-25502242 | MS.gene070437:intron | 70.0% | |
| ! | TGTGAGGCCTGGCGGTGTCG+GGG | - | chr3.3:25502224-25502243 | MS.gene070437:intron | 70.0% |
| !! | GCCTGGCGGTGTCGGGGCGA+CGG | - | chr3.3:25502230-25502249 | MS.gene070437:intron | 80.0% |
| ! | GCCGTCGCCCCGACACCGCC+AGG | + | chr3.3:25502234-25502253 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 25501694 | 25503755 | 25501694 | ID=MS.gene070437 |
| chr3.3 | mRNA | 25501694 | 25503755 | 25501694 | ID=MS.gene070437.t1;Parent=MS.gene070437 |
| chr3.3 | exon | 25503123 | 25503755 | 25503123 | ID=MS.gene070437.t1.exon1;Parent=MS.gene070437.t1 |
| chr3.3 | CDS | 25503123 | 25503755 | 25503123 | ID=cds.MS.gene070437.t1;Parent=MS.gene070437.t1 |
| chr3.3 | exon | 25501694 | 25501867 | 25501694 | ID=MS.gene070437.t1.exon2;Parent=MS.gene070437.t1 |
| chr3.3 | CDS | 25501694 | 25501867 | 25501694 | ID=cds.MS.gene070437.t1;Parent=MS.gene070437.t1 |
| Gene Sequence |
| Protein sequence |
