Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071152.t1 | XP_013448631.1 | 100 | 153 | 0 | 0 | 1 | 153 | 63 | 215 | 4.80E-83 | 317 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071152.t1 | Q9ZTN2 | 90.2 | 153 | 15 | 0 | 1 | 153 | 63 | 215 | 6.1e-79 | 294.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071152.t1 | I3SA95 | 100.0 | 153 | 0 | 0 | 1 | 153 | 63 | 215 | 3.4e-83 | 317.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene071152 | -0.801944 | 7.09E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene071152 | -0.809672 | 1.69E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene071152 | -0.816935 | 4.28E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene071152 | -0.822504 | 2.29E-53 | -1.69E-46 |
| MS.gene050237 | MS.gene071152 | -0.807696 | 4.46E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene071152 | 0.805204 | 1.49E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene071152 | -0.809442 | 1.89E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene071152 | 0.825945 | 3.55E-54 | -1.69E-46 |
| MS.gene050680 | MS.gene071152 | -0.827472 | 1.54E-54 | -1.69E-46 |
| MS.gene050750 | MS.gene071152 | -0.83419 | 3.46E-56 | -1.69E-46 |
| MS.gene050905 | MS.gene071152 | 0.807449 | 5.03E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene071152 | -0.838054 | 3.61E-57 | -1.69E-46 |
| MS.gene05119 | MS.gene071152 | 0.805423 | 1.34E-49 | -1.69E-46 |
| MS.gene051924 | MS.gene071152 | 0.813093 | 3.05E-51 | -1.69E-46 |
| MS.gene051926 | MS.gene071152 | 0.826233 | 3.04E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene071152 | -0.812582 | 3.94E-51 | -1.69E-46 |
| MS.gene052309 | MS.gene071152 | 0.871321 | 7.47E-67 | -1.69E-46 |
| MS.gene052358 | MS.gene071152 | 0.809853 | 1.54E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene071152 | -0.817737 | 2.82E-52 | -1.69E-46 |
| MS.gene052965 | MS.gene071152 | 0.847593 | 1.05E-59 | -1.69E-46 |
| MS.gene053006 | MS.gene071152 | -0.812555 | 4.00E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene071152 | -0.803311 | 3.70E-49 | -1.69E-46 |
| MS.gene053085 | MS.gene071152 | -0.805594 | 1.24E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene071152 | -0.807695 | 4.46E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene071152 | -0.801608 | 8.31E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene071152 | -0.834482 | 2.92E-56 | -1.69E-46 |
| MS.gene054291 | MS.gene071152 | 0.82192 | 3.12E-53 | -1.69E-46 |
| MS.gene054405 | MS.gene071152 | -0.831947 | 1.25E-55 | -1.69E-46 |
| MS.gene054657 | MS.gene071152 | -0.810979 | 8.80E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene071152 | -0.832219 | 1.07E-55 | -1.69E-46 |
| MS.gene05510 | MS.gene071152 | -0.828852 | 7.14E-55 | -1.69E-46 |
| MS.gene055230 | MS.gene071152 | -0.802214 | 6.24E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene071152 | -0.848684 | 5.24E-60 | -1.69E-46 |
| MS.gene056506 | MS.gene071152 | -0.806285 | 8.86E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene071152 | -0.803613 | 3.21E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene071152 | -0.82282 | 1.93E-53 | -1.69E-46 |
| MS.gene057156 | MS.gene071152 | 0.823466 | 1.36E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene071152 | -0.837927 | 3.89E-57 | -1.69E-46 |
| MS.gene059161 | MS.gene071152 | -0.829292 | 5.59E-55 | -1.69E-46 |
| MS.gene05979 | MS.gene071152 | -0.801831 | 7.48E-49 | -1.69E-46 |
| MS.gene059899 | MS.gene071152 | -0.803458 | 3.45E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene071152 | -0.803252 | 3.81E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene071152 | 0.832891 | 7.30E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene071152 | -0.816584 | 5.13E-52 | -1.69E-46 |
| MS.gene060634 | MS.gene071152 | 0.858373 | 8.61E-63 | -1.69E-46 |
| MS.gene060683 | MS.gene071152 | -0.824985 | 6.00E-54 | -1.69E-46 |
| MS.gene060685 | MS.gene071152 | -0.820349 | 7.19E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene071152 | -0.819807 | 9.57E-53 | -1.69E-46 |
| MS.gene060918 | MS.gene071152 | -0.82153 | 3.84E-53 | -1.69E-46 |
| MS.gene061040 | MS.gene071152 | 0.823335 | 1.46E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene071152 | 0.819609 | 1.06E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071152.t1 | MTR_7g056337 | 100.000 | 153 | 0 | 0 | 1 | 153 | 63 | 215 | 2.29e-112 | 317 |
| MS.gene071152.t1 | MTR_8g087430 | 71.242 | 153 | 44 | 0 | 1 | 153 | 63 | 215 | 6.33e-79 | 233 |
| MS.gene071152.t1 | MTR_4g075550 | 34.839 | 155 | 86 | 5 | 12 | 153 | 117 | 269 | 2.14e-22 | 90.1 |
| MS.gene071152.t1 | MTR_3g113920 | 34.783 | 161 | 90 | 5 | 6 | 153 | 111 | 269 | 9.68e-22 | 88.6 |
| MS.gene071152.t1 | MTR_8g012615 | 33.129 | 163 | 94 | 3 | 1 | 150 | 40 | 200 | 6.22e-19 | 79.7 |
| MS.gene071152.t1 | MTR_8g012595 | 31.579 | 152 | 88 | 3 | 12 | 149 | 118 | 267 | 3.51e-16 | 73.6 |
| MS.gene071152.t1 | MTR_8g012605 | 36.036 | 111 | 64 | 3 | 1 | 107 | 107 | 214 | 2.91e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071152.t1 | AT3G25040 | 85.621 | 153 | 22 | 0 | 1 | 153 | 63 | 215 | 9.09e-98 | 281 |
| MS.gene071152.t1 | AT1G29330 | 70.588 | 153 | 45 | 0 | 1 | 153 | 1 | 153 | 1.15e-79 | 233 |
| MS.gene071152.t1 | AT1G29330 | 70.588 | 153 | 45 | 0 | 1 | 153 | 63 | 215 | 1.34e-79 | 234 |
| MS.gene071152.t1 | AT1G75760 | 34.783 | 161 | 90 | 5 | 6 | 153 | 111 | 269 | 2.04e-22 | 90.1 |
| MS.gene071152.t1 | AT1G19970 | 35.484 | 155 | 85 | 5 | 12 | 153 | 117 | 269 | 5.52e-22 | 89.0 |
| MS.gene071152.t1 | AT4G38790 | 33.735 | 166 | 95 | 5 | 1 | 153 | 107 | 270 | 2.28e-21 | 87.4 |
| MS.gene071152.t1 | AT1G75760 | 33.784 | 148 | 84 | 4 | 6 | 141 | 111 | 256 | 1.07e-20 | 85.5 |
| MS.gene071152.t1 | AT3G25160 | 33.333 | 156 | 87 | 5 | 6 | 147 | 113 | 265 | 9.16e-20 | 83.2 |
| MS.gene071152.t1 | AT2G21190 | 31.928 | 166 | 98 | 5 | 1 | 153 | 103 | 266 | 1.45e-19 | 82.8 |
| MS.gene071152.t1 | AT1G75760 | 35.238 | 105 | 63 | 2 | 6 | 107 | 111 | 213 | 7.16e-17 | 74.7 |
| MS.gene071152.t1 | AT1G19970 | 36.364 | 99 | 58 | 2 | 12 | 107 | 117 | 213 | 4.28e-16 | 72.8 |
Find 34 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGAGAAATTCACATTTA+AGG | 0.174751 | 7.3:-48890375 | MS.gene071152:CDS |
| TGTTATGAAGTTGATATTCT+TGG | 0.275463 | 7.3:-48890525 | None:intergenic |
| GGACAATATGTCTTTCTTCT+TGG | 0.280895 | 7.3:-48890121 | MS.gene071152:CDS |
| AGTATTGCCCTGCTTATTGT+TGG | 0.324545 | 7.3:-48890408 | MS.gene071152:CDS |
| AGAAACATTGACAATTTAAC+AGG | 0.337581 | 7.3:-48890142 | MS.gene071152:CDS |
| GACAATATGTCTTTCTTCTT+GGG | 0.345288 | 7.3:-48890120 | MS.gene071152:intron |
| GAGCACTATACATTCTCAAC+TGG | 0.354642 | 7.3:-48889382 | MS.gene071152:CDS |
| TGAATTTCTCATTGATAAGT+AGG | 0.405613 | 7.3:+48890384 | None:intergenic |
| CAGTACCAGTTGAGGAAGTA+TGG | 0.407791 | 7.3:+48890177 | None:intergenic |
| TGGCAACAGCTTCCAAATAC+AGG | 0.408291 | 7.3:+48890197 | None:intergenic |
| GTTATGAAGTTGATATTCTT+GGG | 0.424245 | 7.3:-48890524 | MS.gene071152:CDS |
| TGTTGCCATACTTCCTCAAC+TGG | 0.450840 | 7.3:-48890182 | MS.gene071152:CDS |
| CCGAGCCCCACTTTGTCCAT+TGG | 0.453725 | 7.3:-48889343 | MS.gene071152:CDS |
| ATGCTGGCAAATGAAGCTTC+TGG | 0.490077 | 7.3:+48889019 | None:intergenic |
| AAGTAGGGCCAACAATAAGC+AGG | 0.512666 | 7.3:+48890400 | None:intergenic |
| TAGATCATATGACAAAGATC+AGG | 0.514146 | 7.3:-48890453 | MS.gene071152:CDS |
| CCAATGGACAAAGTGGGGCT+CGG | 0.529481 | 7.3:+48889343 | None:intergenic |
| TACTTATCCAATGGACAAAG+TGG | 0.529817 | 7.3:+48889336 | None:intergenic |
| TATGGAGAATTACACTATGC+TGG | 0.546192 | 7.3:+48889003 | None:intergenic |
| CTTTGTAGCAGTACCAGTTG+AGG | 0.551696 | 7.3:+48890169 | None:intergenic |
| TTTCTATTGTATGGTACATG+AGG | 0.554169 | 7.3:-48890493 | MS.gene071152:CDS |
| TCTTCTACTACTATTTCCAA+AGG | 0.567268 | 7.3:-48889142 | MS.gene071152:intron |
| TGAGAAATTCACATTTAAGG+AGG | 0.576216 | 7.3:-48890372 | MS.gene071152:intron |
| GAATTTCTCATTGATAAGTA+GGG | 0.579233 | 7.3:+48890385 | None:intergenic |
| ACTTATCCAATGGACAAAGT+GGG | 0.585109 | 7.3:+48889337 | None:intergenic |
| TACTAGAAAATAGTGACGGA+AGG | 0.599670 | 7.3:+48890427 | None:intergenic |
| ACAGAATTATACTTATCCAA+TGG | 0.602023 | 7.3:+48889327 | None:intergenic |
| GGCAACAGCTTCCAAATACA+GGG | 0.635959 | 7.3:+48890198 | None:intergenic |
| CTTATCCAATGGACAAAGTG+GGG | 0.636328 | 7.3:+48889338 | None:intergenic |
| TATACATGGAATAGGTGATG+TGG | 0.652075 | 7.3:-48890228 | MS.gene071152:intron |
| AGCACTATACATTCTCAACT+GGG | 0.652774 | 7.3:-48889381 | MS.gene071152:CDS |
| GCAATACTAGAAAATAGTGA+CGG | 0.652982 | 7.3:+48890423 | None:intergenic |
| ATGATCTACGAACAATCTTG+TGG | 0.654874 | 7.3:+48890468 | None:intergenic |
| AGTAGGGCCAACAATAAGCA+GGG | 0.670399 | 7.3:+48890401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGCAAATATATAATGTTAA+AGG | + | chr7.3:48889455-48889474 | None:intergenic | 15.0% |
| !! | CTATAATAAAAAATAAGCAA+TGG | - | chr7.3:48890022-48890041 | MS.gene071152:intron | 15.0% |
| !! | GGATTATTAACATAAATAAA+TGG | + | chr7.3:48890444-48890463 | None:intergenic | 15.0% |
| !! | CTAGATAAATTATAGCTAAT+GGG | - | chr7.3:48889775-48889794 | MS.gene071152:intron | 20.0% |
| !! | TAAAAACATTCAAACATGTA+TGG | + | chr7.3:48889237-48889256 | None:intergenic | 20.0% |
| !! | TAGATAAATTATAGCTAATG+GGG | - | chr7.3:48889776-48889795 | MS.gene071152:intron | 20.0% |
| !!! | AGTTGAAAGTTTTTATTTGT+TGG | - | chr7.3:48889909-48889928 | MS.gene071152:intron | 20.0% |
| !!! | TCTTGTTTAATTGTTATCAT+TGG | - | chr7.3:48890235-48890254 | MS.gene071152:intron | 20.0% |
| ! | AAAGCTAAAACAAGTTCAAA+TGG | + | chr7.3:48890070-48890089 | None:intergenic | 25.0% |
| ! | AAGCTAAAACAAGTTCAAAT+GGG | + | chr7.3:48890069-48890088 | None:intergenic | 25.0% |
| ! | AATTAGCAGCTATTATATTC+TGG | - | chr7.3:48889507-48889526 | MS.gene071152:intron | 25.0% |
| ! | ACAGAATTATACTTATCCAA+TGG | + | chr7.3:48890214-48890233 | None:intergenic | 25.0% |
| ! | ACTGTAATGTTTAACAATGA+TGG | + | chr7.3:48890289-48890308 | None:intergenic | 25.0% |
| ! | AGAAACATTGACAATTTAAC+AGG | - | chr7.3:48889396-48889415 | MS.gene071152:intron | 25.0% |
| ! | ATATATTTGCATGATTTCTG+TGG | - | chr7.3:48889463-48889482 | MS.gene071152:intron | 25.0% |
| ! | ATCATTGTTAAACATTACAG+TGG | - | chr7.3:48890288-48890307 | MS.gene071152:intron | 25.0% |
| ! | CAATGAGAAATTCACATTTA+AGG | - | chr7.3:48889163-48889182 | MS.gene071152:CDS | 25.0% |
| ! | CCATTAGCTATAATTTATCT+AGG | + | chr7.3:48889777-48889796 | None:intergenic | 25.0% |
| ! | CCTAGATAAATTATAGCTAA+TGG | - | chr7.3:48889774-48889793 | MS.gene071152:intron | 25.0% |
| ! | GAATTTCTCATTGATAAGTA+GGG | + | chr7.3:48889156-48889175 | None:intergenic | 25.0% |
| ! | TACTATTTCCAAAGGTAAAT+TGG | - | chr7.3:48890404-48890423 | MS.gene071152:CDS | 25.0% |
| ! | TATAATTTATCTAGGTGAGT+TGG | + | chr7.3:48889769-48889788 | None:intergenic | 25.0% |
| ! | TGAATTTCTCATTGATAAGT+AGG | + | chr7.3:48889157-48889176 | None:intergenic | 25.0% |
| ! | TTTCATGTAACATGTTGTAT+AGG | - | chr7.3:48889727-48889746 | MS.gene071152:intron | 25.0% |
| !!! | TTGAACTTGTTTTAGCTTTT+AGG | - | chr7.3:48890071-48890090 | MS.gene071152:intron | 25.0% |
| AAACTGCTTATACATGGAAT+AGG | - | chr7.3:48889302-48889321 | MS.gene071152:intron | 30.0% | |
| AACCTTAATAAGCAGAACTT+TGG | + | chr7.3:48889967-48889986 | None:intergenic | 30.0% | |
| ATGGTAACTTTGTATATCAG+AGG | - | chr7.3:48890041-48890060 | MS.gene071152:intron | 30.0% | |
| CAACTCAAGATCATAATAGA+AGG | + | chr7.3:48889894-48889913 | None:intergenic | 30.0% | |
| GACAATATGTCTTTCTTCTT+GGG | - | chr7.3:48889418-48889437 | MS.gene071152:intron | 30.0% | |
| GCAATACTAGAAAATAGTGA+CGG | + | chr7.3:48889118-48889137 | None:intergenic | 30.0% | |
| TAGATCATATGACAAAGATC+AGG | - | chr7.3:48889085-48889104 | MS.gene071152:intron | 30.0% | |
| TCTTCTACTACTATTTCCAA+AGG | - | chr7.3:48890396-48890415 | MS.gene071152:CDS | 30.0% | |
| TGAAAATATTGCCTTGTAGT+TGG | - | chr7.3:48890488-48890507 | MS.gene071152:CDS | 30.0% | |
| TGAGAAATTCACATTTAAGG+AGG | - | chr7.3:48889166-48889185 | MS.gene071152:CDS | 30.0% | |
| TTTCTATTGTATGGTACATG+AGG | - | chr7.3:48889045-48889064 | MS.gene071152:intron | 30.0% | |
| ! | ATTCCATGTATAAGCAGTTT+TGG | + | chr7.3:48889302-48889321 | None:intergenic | 30.0% |
| ! | GAAGCTCATTTTCTATTGTA+TGG | - | chr7.3:48889036-48889055 | MS.gene071152:intron | 30.0% |
| ! | TTCCATGTATAAGCAGTTTT+GGG | + | chr7.3:48889301-48889320 | None:intergenic | 30.0% |
| ! | TTTATTTGTTGGAACGAAAC+TGG | - | chr7.3:48889920-48889939 | MS.gene071152:intron | 30.0% |
| AATAAATGGACCTGACAAGT+AGG | + | chr7.3:48890430-48890449 | None:intergenic | 35.0% | |
| ACTTATCCAATGGACAAAGT+GGG | + | chr7.3:48890204-48890223 | None:intergenic | 35.0% | |
| AGCACTATACATTCTCAACT+GGG | - | chr7.3:48890157-48890176 | MS.gene071152:CDS | 35.0% | |
| AGCCAAAGTTCTGCTTATTA+AGG | - | chr7.3:48889962-48889981 | MS.gene071152:intron | 35.0% | |
| ATGATCTACGAACAATCTTG+TGG | + | chr7.3:48889073-48889092 | None:intergenic | 35.0% | |
| GGACAATATGTCTTTCTTCT+TGG | - | chr7.3:48889417-48889436 | MS.gene071152:intron | 35.0% | |
| GGCTTCAAGATCATAATAGA+AGG | + | chr7.3:48889946-48889965 | None:intergenic | 35.0% | |
| TACTTATCCAATGGACAAAG+TGG | + | chr7.3:48890205-48890224 | None:intergenic | 35.0% | |
| TATACATGGAATAGGTGATG+TGG | - | chr7.3:48889310-48889329 | MS.gene071152:intron | 35.0% | |
| TTGAAACTGATCAATGAGAC+TGG | - | chr7.3:48889868-48889887 | MS.gene071152:intron | 35.0% | |
| TTGGTTTATGCTCTTTAGAC+TGG | - | chr7.3:48890254-48890273 | MS.gene071152:intron | 35.0% | |
| TTTCAATGAAGCCAACAAAC+AGG | + | chr7.3:48889854-48889873 | None:intergenic | 35.0% | |
| ! | CATTACTTCTTTTGCAGCAT+GGG | - | chr7.3:48890337-48890356 | MS.gene071152:intron | 35.0% |
| ! | TACTAGAAAATAGTGACGGA+AGG | + | chr7.3:48889114-48889133 | None:intergenic | 35.0% |
| AATGGAAGGAAGTCAGAACA+AGG | + | chr7.3:48890321-48890340 | None:intergenic | 40.0% | |
| AGACCAACCTTCCAGTTATT+TGG | + | chr7.3:48889558-48889577 | None:intergenic | 40.0% | |
| AGTATTGCCCTGCTTATTGT+TGG | - | chr7.3:48889130-48889149 | MS.gene071152:intron | 40.0% | |
| CAAGTAGGCCAATTTACCTT+TGG | + | chr7.3:48890415-48890434 | None:intergenic | 40.0% | |
| CCATGCTGCAAAAGAAGTAA+TGG | + | chr7.3:48890339-48890358 | None:intergenic | 40.0% | |
| CTGATCAACAGCCAAATAAC+TGG | - | chr7.3:48889544-48889563 | MS.gene071152:intron | 40.0% | |
| CTTATCCAATGGACAAAGTG+GGG | + | chr7.3:48890203-48890222 | None:intergenic | 40.0% | |
| CTTTCTTCTTGGGTAAGCTA+TGG | - | chr7.3:48889428-48889447 | MS.gene071152:intron | 40.0% | |
| CTTTGTCTGTGAAATGCAGT+GGG | - | chr7.3:48890129-48890148 | MS.gene071152:CDS | 40.0% | |
| GAGCACTATACATTCTCAAC+TGG | - | chr7.3:48890156-48890175 | MS.gene071152:CDS | 40.0% | |
| GCTCAAAACTAAGACGAACA+AGG | + | chr7.3:48890465-48890484 | None:intergenic | 40.0% | |
| GTCCCAAAACTGCTTATACA+TGG | - | chr7.3:48889296-48889315 | MS.gene071152:intron | 40.0% | |
| TAGCTAATGGGGACAACAAA+AGG | - | chr7.3:48889787-48889806 | MS.gene071152:intron | 40.0% | |
| TCAACAGCCAAATAACTGGA+AGG | - | chr7.3:48889548-48889567 | MS.gene071152:intron | 40.0% | |
| TGGTTGTTCTTCCAACTACA+AGG | + | chr7.3:48890502-48890521 | None:intergenic | 40.0% | |
| ! | CCATTACTTCTTTTGCAGCA+TGG | - | chr7.3:48890336-48890355 | MS.gene071152:intron | 40.0% |
| ! | GCTGCAAAAGAAGTAATGGA+AGG | + | chr7.3:48890335-48890354 | None:intergenic | 40.0% |
| ! | GTGAGTTGGATTGACAACTT+TGG | + | chr7.3:48889755-48889774 | None:intergenic | 40.0% |
| ! | GTGGACATTTTCCCTGTATT+TGG | - | chr7.3:48889329-48889348 | MS.gene071152:intron | 40.0% |
| AAGTAGGGCCAACAATAAGC+AGG | + | chr7.3:48889141-48889160 | None:intergenic | 45.0% | |
| AGTAGGGCCAACAATAAGCA+GGG | + | chr7.3:48889140-48889159 | None:intergenic | 45.0% | |
| ATGCTGGCAAATGAAGCTTC+TGG | + | chr7.3:48890522-48890541 | None:intergenic | 45.0% | |
| CAGCCAAATAACTGGAAGGT+TGG | - | chr7.3:48889552-48889571 | MS.gene071152:intron | 45.0% | |
| CAGTACCAGTTGAGGAAGTA+TGG | + | chr7.3:48889364-48889383 | None:intergenic | 45.0% | |
| CTTTGTAGCAGTACCAGTTG+AGG | + | chr7.3:48889372-48889391 | None:intergenic | 45.0% | |
| GCATAGAACGAGCTTAGTAG+TGG | - | chr7.3:48889596-48889615 | MS.gene071152:intron | 45.0% | |
| GCTTTGTCTGTGAAATGCAG+TGG | - | chr7.3:48890128-48890147 | MS.gene071152:CDS | 45.0% | |
| GGCAACAGCTTCCAAATACA+GGG | + | chr7.3:48889343-48889362 | None:intergenic | 45.0% | |
| TGGCAACAGCTTCCAAATAC+AGG | + | chr7.3:48889344-48889363 | None:intergenic | 45.0% | |
| TGTTGCCATACTTCCTCAAC+TGG | - | chr7.3:48889356-48889375 | MS.gene071152:CDS | 45.0% | |
| ! | CTTTTGCAGCATGGGTTTCT+GGG | - | chr7.3:48890345-48890364 | MS.gene071152:intron | 45.0% |
| ! | GGTAAATTGGCCTACTTGTC+AGG | - | chr7.3:48890417-48890436 | MS.gene071152:CDS | 45.0% |
| ! | TCTTTTGCAGCATGGGTTTC+TGG | - | chr7.3:48890344-48890363 | MS.gene071152:intron | 45.0% |
| !! | TTAGTTTGCAGTAGTGCTCG+TGG | - | chr7.3:48889823-48889842 | MS.gene071152:intron | 45.0% |
| TCGTGGACAAGCCTGTTTGT+TGG | - | chr7.3:48889840-48889859 | MS.gene071152:intron | 50.0% | |
| CCAATGGACAAAGTGGGGCT+CGG | + | chr7.3:48890198-48890217 | None:intergenic | 55.0% | |
| CCGAGCCCCACTTTGTCCAT+TGG | - | chr7.3:48890195-48890214 | MS.gene071152:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 48889017 | 48890543 | 48889017 | ID=MS.gene071152 |
| chr7.3 | mRNA | 48889017 | 48890543 | 48889017 | ID=MS.gene071152.t1;Parent=MS.gene071152 |
| chr7.3 | exon | 48890373 | 48890543 | 48890373 | ID=MS.gene071152.t1.exon1;Parent=MS.gene071152.t1 |
| chr7.3 | CDS | 48890373 | 48890543 | 48890373 | ID=cds.MS.gene071152.t1;Parent=MS.gene071152.t1 |
| chr7.3 | exon | 48890121 | 48890236 | 48890121 | ID=MS.gene071152.t1.exon2;Parent=MS.gene071152.t1 |
| chr7.3 | CDS | 48890121 | 48890236 | 48890121 | ID=cds.MS.gene071152.t1;Parent=MS.gene071152.t1 |
| chr7.3 | exon | 48889339 | 48889412 | 48889339 | ID=MS.gene071152.t1.exon3;Parent=MS.gene071152.t1 |
| chr7.3 | CDS | 48889339 | 48889412 | 48889339 | ID=cds.MS.gene071152.t1;Parent=MS.gene071152.t1 |
| chr7.3 | exon | 48889143 | 48889206 | 48889143 | ID=MS.gene071152.t1.exon4;Parent=MS.gene071152.t1 |
| chr7.3 | CDS | 48889143 | 48889206 | 48889143 | ID=cds.MS.gene071152.t1;Parent=MS.gene071152.t1 |
| chr7.3 | exon | 48889017 | 48889053 | 48889017 | ID=MS.gene071152.t1.exon5;Parent=MS.gene071152.t1 |
| chr7.3 | CDS | 48889017 | 48889053 | 48889017 | ID=cds.MS.gene071152.t1;Parent=MS.gene071152.t1 |
| Gene Sequence |
| Protein sequence |
