AlfalfaGEDB | MS.gene071670

M. sativa cultivar XinJiangDaYe / MS.gene071670

KEGG: -
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00861.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071670.t1	GAU29362.1	98.9	92	1	0	1	92	23	114	2.20E-38	167.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071670.t1	A8IAP8	45.6	90	48	1	1	90	31	119	1.8e-09	63.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071670.t1	A0A2Z6MWZ4	98.9	92	1	0	1	92	23	114	1.6e-38	167.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene071670	-0.805421	1.35E-49	-1.69E-46
MS.gene049419	MS.gene071670	0.858909	5.96E-63	-1.69E-46
MS.gene049801	MS.gene071670	-0.80318	3.94E-49	-1.69E-46
MS.gene049983	MS.gene071670	-0.806688	7.29E-50	-1.69E-46
MS.gene050105	MS.gene071670	-0.849989	2.27E-60	-1.69E-46
MS.gene050361	MS.gene071670	-0.801323	9.50E-49	-1.69E-46
MS.gene050654	MS.gene071670	-0.82354	1.31E-53	-1.69E-46
MS.gene050826	MS.gene071670	-0.803385	3.57E-49	-1.69E-46
MS.gene051122	MS.gene071670	-0.855004	8.44E-62	-1.69E-46
MS.gene051275	MS.gene071670	-0.808397	3.16E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071670.t1	MTR_1g114200	98.913	92	1	0	1	92	23	114	3.35e-61	182
MS.gene071670.t1	MTR_4g032660	33.708	89	59	0	1	89	108	196	1.27e-12	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071670.t1	AT5G27820	78.261	92	20	0	1	92	23	114	2.13e-50	154
MS.gene071670.t1	AT3G20230	35.955	89	57	0	1	89	95	183	1.50e-14	65.5

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Find 23 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGGGAAGCTACTAG+CGG	0.716694	1.3:-77288363	MS.gene071670:CDS
AAGAGAGAACAGAGGTATCA+TGG	0.461247	1.3:-77288296	MS.gene071670:CDS
AAGCGGTTATTGATTCTCTC+AGG	0.400454	1.3:-77288265	MS.gene071670:CDS
AGAACAGAGGTATCATGGAA+AGG	0.588862	1.3:-77288291	MS.gene071670:CDS
AGCGGAACGCCTTTCGCTCA+AGG	0.547714	1.3:-77288345	MS.gene071670:CDS
AGCGGTTATTGATTCTCTCA+GGG	0.559363	1.3:-77288264	MS.gene071670:CDS
AGTTTCCAGGCTTGATCTCA+AGG	0.483054	1.3:+77288409	None:intergenic
ATCAAGCCTGGAAACTACTC+GGG	0.593151	1.3:-77288402	MS.gene071670:CDS
ATTGATTCTCTCAGGGAAGC+TGG	0.452667	1.3:-77288257	MS.gene071670:CDS
CAACATCCCGAGTAGTTTCC+AGG	0.336475	1.3:+77288396	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATCATGGAAAGGTAAAAG+CGG	-	chr1.3:77288456-77288475	MS.gene071670:CDS	35.0%
AAAGATTGGGAAGCTACTAG+CGG	-	chr1.3:77288375-77288394	MS.gene071670:CDS	40.0%
TTCAAGTGAACAGAAACAGC+AGG	+	chr1.3:77288424-77288443	None:intergenic	40.0%
TTCACTTGAAGAGAGAACAG+AGG	-	chr1.3:77288434-77288453	MS.gene071670:CDS	40.0%
AGTTTCCAGGCTTGATCTCA+AGG	+	chr1.3:77288332-77288351	None:intergenic	45.0%
ATCAAGCCTGGAAACTACTC+GGG	-	chr1.3:77288336-77288355	MS.gene071670:CDS	45.0%
GATCAAGCCTGGAAACTACT+CGG	-	chr1.3:77288335-77288354	MS.gene071670:CDS	45.0%
TTGCTGCAGCTGCAAAGATT+GGG	-	chr1.3:77288362-77288381	MS.gene071670:CDS	45.0%
CAACATCCCGAGTAGTTTCC+AGG	+	chr1.3:77288345-77288364	None:intergenic	50.0%
CAGGAATGTCCTTGAGCGAA+AGG	+	chr1.3:77288405-77288424	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	77288241	77288519	77288241	ID=MS.gene071670
chr1.3	mRNA	77288241	77288519	77288241	ID=MS.gene071670.t1;Parent=MS.gene071670
chr1.3	exon	77288241	77288519	77288241	ID=MS.gene071670.t1.exon1;Parent=MS.gene071670.t1
chr1.3	CDS	77288241	77288519	77288241	ID=cds.MS.gene071670.t1;Parent=MS.gene071670.t1

Gene Sequence	>MS.gene071670 ATGCATTTCACAAATAAGTATGTGAGTGCTCAAGTGATCCACACTCCAACTGCTACCGTTGCCTCTTCTGCAAGCTCACAGGAGAAAGCCTTGAGATCAAGCCTGGAAACTACTCGGGATGTTGCTGCAGCTGCAAAGATTGGGAAGCTACTAGCGGAACGCCTTTCGCTCAAGGACATTCCTGCTGTTTCTGTTCACTTGAAGAGAGAACAGAGGTATCATGGAAAGGTAAAAGCGGTTATTGATTCTCTCAGGGAAGCTGGTGTTAAGTTGCTTTGA
Protein sequence	>MS.gene071670.t1 MHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGKLLAERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVKLL