Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072304.t1 | XP_013444095.1 | 96.8 | 468 | 12 | 1 | 1 | 468 | 1 | 465 | 2.40E-263 | 917.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072304.t1 | Q8VYU3 | 63.6 | 467 | 158 | 5 | 1 | 467 | 1 | 455 | 4.1e-166 | 585.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072304.t1 | A0A072TL11 | 96.8 | 468 | 12 | 1 | 1 | 468 | 1 | 465 | 1.8e-263 | 917.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049150 | MS.gene072304 | 0.810569 | 1.08E-50 | -1.69E-46 |
MS.gene049151 | MS.gene072304 | 0.80019 | 1.62E-48 | -1.69E-46 |
MS.gene049153 | MS.gene072304 | 0.80657 | 7.71E-50 | -1.69E-46 |
MS.gene049491 | MS.gene072304 | 0.815387 | 9.49E-52 | -1.69E-46 |
MS.gene049661 | MS.gene072304 | 0.804049 | 2.60E-49 | -1.69E-46 |
MS.gene049662 | MS.gene072304 | 0.808404 | 3.15E-50 | -1.69E-46 |
MS.gene049758 | MS.gene072304 | 0.833795 | 4.34E-56 | -1.69E-46 |
MS.gene050301 | MS.gene072304 | 0.843139 | 1.68E-58 | -1.69E-46 |
MS.gene050432 | MS.gene072304 | 0.847205 | 1.34E-59 | -1.69E-46 |
MS.gene050529 | MS.gene072304 | 0.806792 | 6.93E-50 | -1.69E-46 |
MS.gene051582 | MS.gene072304 | 0.809997 | 1.43E-50 | -1.69E-46 |
MS.gene052188 | MS.gene072304 | 0.848372 | 6.39E-60 | -1.69E-46 |
MS.gene052253 | MS.gene072304 | 0.806466 | 8.11E-50 | -1.69E-46 |
MS.gene052310 | MS.gene072304 | 0.813154 | 2.95E-51 | -1.69E-46 |
MS.gene052340 | MS.gene072304 | 0.842348 | 2.73E-58 | -1.69E-46 |
MS.gene052481 | MS.gene072304 | 0.818188 | 2.23E-52 | -1.69E-46 |
MS.gene052484 | MS.gene072304 | 0.816779 | 4.64E-52 | -1.69E-46 |
MS.gene052485 | MS.gene072304 | 0.840183 | 1.01E-57 | -1.69E-46 |
MS.gene053103 | MS.gene072304 | 0.804235 | 2.38E-49 | -1.69E-46 |
MS.gene053209 | MS.gene072304 | 0.828358 | 9.40E-55 | -1.69E-46 |
MS.gene053557 | MS.gene072304 | 0.820411 | 6.96E-53 | -1.69E-46 |
MS.gene053836 | MS.gene072304 | 0.832298 | 1.02E-55 | -1.69E-46 |
MS.gene054930 | MS.gene072304 | 0.800287 | 1.55E-48 | -1.69E-46 |
MS.gene055116 | MS.gene072304 | 0.831388 | 1.72E-55 | -1.69E-46 |
MS.gene055277 | MS.gene072304 | 0.823042 | 1.71E-53 | -1.69E-46 |
MS.gene055390 | MS.gene072304 | 0.805496 | 1.30E-49 | -1.69E-46 |
MS.gene055422 | MS.gene072304 | 0.811097 | 8.30E-51 | -1.69E-46 |
MS.gene055428 | MS.gene072304 | 0.826293 | 2.94E-54 | -1.69E-46 |
MS.gene055859 | MS.gene072304 | 0.805117 | 1.56E-49 | -1.69E-46 |
MS.gene05702 | MS.gene072304 | 0.825113 | 5.60E-54 | -1.69E-46 |
MS.gene057124 | MS.gene072304 | 0.800817 | 1.21E-48 | -1.69E-46 |
MS.gene057448 | MS.gene072304 | 0.840146 | 1.04E-57 | -1.69E-46 |
MS.gene057449 | MS.gene072304 | 0.825203 | 5.33E-54 | -1.69E-46 |
MS.gene057450 | MS.gene072304 | 0.837028 | 6.62E-57 | -1.69E-46 |
MS.gene058002 | MS.gene072304 | 0.872269 | 3.62E-67 | -1.69E-46 |
MS.gene058082 | MS.gene072304 | 0.83596 | 1.24E-56 | -1.69E-46 |
MS.gene05811 | MS.gene072304 | 0.819379 | 1.20E-52 | -1.69E-46 |
MS.gene058142 | MS.gene072304 | 0.821032 | 5.01E-53 | -1.69E-46 |
MS.gene058928 | MS.gene072304 | 0.813691 | 2.25E-51 | -1.69E-46 |
MS.gene05907 | MS.gene072304 | 0.81695 | 4.25E-52 | -1.69E-46 |
MS.gene059285 | MS.gene072304 | 0.830609 | 2.67E-55 | -1.69E-46 |
MS.gene059366 | MS.gene072304 | 0.807756 | 4.33E-50 | -1.69E-46 |
MS.gene059597 | MS.gene072304 | 0.838685 | 2.48E-57 | -1.69E-46 |
MS.gene059688 | MS.gene072304 | 0.854902 | 9.03E-62 | -1.69E-46 |
MS.gene059692 | MS.gene072304 | 0.857775 | 1.30E-62 | -1.69E-46 |
MS.gene059695 | MS.gene072304 | 0.856278 | 3.59E-62 | -1.69E-46 |
MS.gene059708 | MS.gene072304 | 0.819253 | 1.28E-52 | -1.69E-46 |
MS.gene05984 | MS.gene072304 | 0.837988 | 3.76E-57 | -1.69E-46 |
MS.gene059894 | MS.gene072304 | 0.838727 | 2.42E-57 | -1.69E-46 |
MS.gene059899 | MS.gene072304 | 0.814099 | 1.83E-51 | -1.69E-46 |
MS.gene060407 | MS.gene072304 | 0.839699 | 1.36E-57 | -1.69E-46 |
MS.gene060569 | MS.gene072304 | 0.802388 | 5.74E-49 | -1.69E-46 |
MS.gene061049 | MS.gene072304 | 0.839215 | 1.81E-57 | -1.69E-46 |
MS.gene061051 | MS.gene072304 | -0.80067 | 1.29E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072304.t1 | MTR_8g012570 | 96.795 | 468 | 12 | 1 | 1 | 468 | 1 | 465 | 0.0 | 931 |
MS.gene072304.t1 | MTR_7g055700 | 74.034 | 466 | 109 | 3 | 1 | 466 | 1 | 454 | 0.0 | 704 |
MS.gene072304.t1 | MTR_8g016030 | 70.716 | 461 | 119 | 7 | 1 | 458 | 1 | 448 | 0.0 | 622 |
MS.gene072304.t1 | MTR_7g055700 | 74.640 | 347 | 85 | 1 | 120 | 466 | 1 | 344 | 0.0 | 534 |
MS.gene072304.t1 | MTR_7g060730 | 67.890 | 109 | 28 | 3 | 49 | 153 | 3 | 108 | 1.07e-41 | 144 |
MS.gene072304.t1 | MTR_7g060740 | 53.077 | 130 | 40 | 3 | 186 | 315 | 3 | 111 | 8.90e-35 | 126 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072304.t1 | AT3G07270 | 60.814 | 467 | 161 | 10 | 1 | 460 | 1 | 452 | 0.0 | 546 |
MS.gene072304.t1 | AT3G07270 | 60.600 | 467 | 162 | 10 | 1 | 460 | 1 | 452 | 0.0 | 542 |
Find 109 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCAACTGACATTGCTTCT+AGG | 0.247277 | 8.3:-75861754 | MS.gene072304:CDS |
TCCACCTAAAAGTGGTGATA+TGG | 0.266701 | 8.3:+75861877 | None:intergenic |
ATTGCAAATGCTACATCTTC+TGG | 0.267208 | 8.3:-75861713 | MS.gene072304:CDS |
TGCAATACTTTGCAAGAATA+AGG | 0.267255 | 8.3:+75861730 | None:intergenic |
TTTCTAGAATCAAGCCTAAA+AGG | 0.282324 | 8.3:-75862505 | MS.gene072304:CDS |
GTCTTGGTGAAGATATTAAT+AGG | 0.315735 | 8.3:-75863892 | MS.gene072304:CDS |
TGCTTAATCCAACAACTCTT+TGG | 0.318636 | 8.3:+75862686 | None:intergenic |
TCTAGGGGAATTGAAAAGTT+TGG | 0.319552 | 8.3:-75861812 | MS.gene072304:CDS |
TAAATCTAGAGGCATTGATA+TGG | 0.321920 | 8.3:-75862398 | MS.gene072304:CDS |
TTATTATCTATGCCAGCTTC+AGG | 0.326221 | 8.3:+75862835 | None:intergenic |
ATACATGTTTCGTCAGGTTC+CGG | 0.333764 | 8.3:-75862472 | MS.gene072304:CDS |
GAAAATGGAGTGAGTTTGTT+TGG | 0.336188 | 8.3:-75863983 | MS.gene072304:CDS |
CGGATTGATAGGTCCCGTTT+TGG | 0.343833 | 8.3:+75862300 | None:intergenic |
GTCACACATGCATGATTTCT+AGG | 0.349323 | 8.3:-75861829 | MS.gene072304:CDS |
CCGAGTTGAACTTGCCGTTT+TGG | 0.352393 | 8.3:-75862066 | MS.gene072304:CDS |
AGAAAGATTGTTTCTATGTC+AGG | 0.355506 | 8.3:+75862523 | None:intergenic |
CTCCTAATCGTTTCGTGAAA+TGG | 0.361018 | 8.3:-75862204 | MS.gene072304:CDS |
TGGTTTCAAGCTCCAAGTTC+AGG | 0.361526 | 8.3:-75861927 | MS.gene072304:CDS |
ACGTGAACAACGCCGTGAAA+TGG | 0.371684 | 8.3:+75862019 | None:intergenic |
GTGATCATTGCCGGATTGAT+AGG | 0.375935 | 8.3:+75862289 | None:intergenic |
TCACATCCCTGTCAATGCTT+TGG | 0.377050 | 8.3:+75862170 | None:intergenic |
TTGTAAGCCTTTCCTGAACT+TGG | 0.378188 | 8.3:+75861915 | None:intergenic |
TCAGTTAGGAAGGAGCTTGC+AGG | 0.382040 | 8.3:-75862229 | MS.gene072304:CDS |
CATGTCGGTTACGTCCCTTC+TGG | 0.382316 | 8.3:-75862709 | MS.gene072304:CDS |
ATCGGTCATGCTGGCGGTGC+AGG | 0.382420 | 8.3:-75862808 | MS.gene072304:CDS |
TACAATGGTGAGCTTGAAAA+TGG | 0.382873 | 8.3:-75863998 | MS.gene072304:CDS |
CCTTCTGGCCAAAGAGTTGT+TGG | 0.387250 | 8.3:-75862694 | MS.gene072304:CDS |
GGCATAGATAATAATAAAAT+CGG | 0.400523 | 8.3:-75862826 | MS.gene072304:CDS |
CACCAAAGTTTCCTCCAAAA+CGG | 0.401213 | 8.3:-75862314 | MS.gene072304:CDS |
ACCAAAGTTTCCTCCAAAAC+GGG | 0.409382 | 8.3:-75862313 | MS.gene072304:CDS |
TCAGAAGGATTCAGTCCAAT+TGG | 0.411941 | 8.3:-75861983 | MS.gene072304:CDS |
ACAGCTACCATTGCTGTGTT+AGG | 0.412616 | 8.3:-75861782 | MS.gene072304:CDS |
ATATTAATAGGGAAGGTCTT+AGG | 0.430481 | 8.3:-75863880 | MS.gene072304:CDS |
AGCCATTTCACGAAACGATT+AGG | 0.432174 | 8.3:+75862202 | None:intergenic |
CTTTGGGAGAAGATTCAGTT+AGG | 0.436286 | 8.3:-75862243 | MS.gene072304:CDS |
ACTTCAAGAGCCTCAGCGTC+TGG | 0.438758 | 8.3:-75862629 | MS.gene072304:CDS |
AAAATGGAGTGAGTTTGTTT+GGG | 0.453831 | 8.3:-75863982 | MS.gene072304:CDS |
AATACTGCGGTGATCATTGC+CGG | 0.455043 | 8.3:+75862280 | None:intergenic |
AGTGTGTTCAGCTTTACAAC+AGG | 0.460100 | 8.3:-75862599 | MS.gene072304:CDS |
GGTGCTTTATTTCCTGAAGC+TGG | 0.460502 | 8.3:-75862847 | MS.gene072304:CDS |
AATAATAAAATCGGTCATGC+TGG | 0.461804 | 8.3:-75862817 | MS.gene072304:CDS |
GATGGACACCAGCATTGGTC+AGG | 0.472338 | 8.3:+75862352 | None:intergenic |
TATGGAAAATATTCATGCTC+GGG | 0.478199 | 8.3:-75862380 | MS.gene072304:CDS |
GGGGATTGCCTGACCAATGC+TGG | 0.478425 | 8.3:-75862360 | MS.gene072304:CDS |
CATCATATACTTCCATTTCA+CGG | 0.483542 | 8.3:-75862031 | MS.gene072304:CDS |
TCTTGGTGAAGATATTAATA+GGG | 0.485627 | 8.3:-75863891 | MS.gene072304:CDS |
TGAACTTCCAAAGCATTGAC+AGG | 0.490128 | 8.3:-75862177 | MS.gene072304:CDS |
GGGAGAAGATTCAGTTAGGA+AGG | 0.492445 | 8.3:-75862239 | MS.gene072304:CDS |
GTGAAGATACATGTTTCGTC+AGG | 0.495703 | 8.3:-75862478 | MS.gene072304:CDS |
GGAAACTTTGGTGGAAAGAG+TGG | 0.500080 | 8.3:+75862324 | None:intergenic |
AGTACAACGGCAACCCCTGC+TGG | 0.507814 | 8.3:+75862568 | None:intergenic |
AACCGACATGACATTTGACT+TGG | 0.512030 | 8.3:+75862722 | None:intergenic |
GTGGAAAGAGTGGAGAGAGA+TGG | 0.512679 | 8.3:+75862334 | None:intergenic |
ATTACATTTCCACCTAAAAG+TGG | 0.515978 | 8.3:+75861869 | None:intergenic |
ATAAAACCTTTGAATGCTGC+TGG | 0.516330 | 8.3:-75862121 | MS.gene072304:CDS |
CAACAGGGAATTCAACCAGC+AGG | 0.521643 | 8.3:-75862583 | MS.gene072304:CDS |
GTAGGATATTTCCTTTCAGA+AGG | 0.523652 | 8.3:-75861998 | MS.gene072304:CDS |
TCACACATGCATGATTTCTA+GGG | 0.524065 | 8.3:-75861828 | MS.gene072304:CDS |
ATATGGAAAATATTCATGCT+CGG | 0.536544 | 8.3:-75862381 | MS.gene072304:CDS |
CAGTTAGGAAGGAGCTTGCA+GGG | 0.539632 | 8.3:-75862228 | MS.gene072304:CDS |
CAAAACGGGACCTATCAATC+CGG | 0.547377 | 8.3:-75862299 | MS.gene072304:CDS |
ACATGACATTTGACTTGGAA+AGG | 0.549188 | 8.3:+75862727 | None:intergenic |
TCAAGCTCCAAGTTCAGGAA+AGG | 0.552246 | 8.3:-75861922 | MS.gene072304:CDS |
TGCTCACATTGTGACCAAAA+CGG | 0.553718 | 8.3:+75862052 | None:intergenic |
AAGATTCACAGTAGGAATAG+AGG | 0.553746 | 8.3:+75862758 | None:intergenic |
ACCTCGCCAGCAGCATTCAA+AGG | 0.556508 | 8.3:+75862115 | None:intergenic |
TAGAATCAAGCCTAAAAGGT+GGG | 0.558239 | 8.3:-75862501 | MS.gene072304:CDS |
CAACAACTCTTTGGCCAGAA+GGG | 0.562430 | 8.3:+75862695 | None:intergenic |
GAGTTTGTTTGGGTGTAGTG+AGG | 0.562917 | 8.3:-75863972 | MS.gene072304:CDS |
AAGGTGAAGGACATTGTTGA+AGG | 0.564141 | 8.3:-75862868 | MS.gene072304:CDS |
TTTGATGAGGTGTGTTACAA+TGG | 0.564966 | 8.3:-75864013 | MS.gene072304:CDS |
AGAGAGATGGACACCAGCAT+TGG | 0.567275 | 8.3:+75862347 | None:intergenic |
GACAGGGATGTGAAGCTGAA+TGG | 0.568364 | 8.3:-75862160 | MS.gene072304:CDS |
CTGAATGGCTCCATCTGTGG+CGG | 0.572648 | 8.3:-75862145 | MS.gene072304:CDS |
CCAACAACTCTTTGGCCAGA+AGG | 0.572834 | 8.3:+75862694 | None:intergenic |
GGTCATGCTGGCGGTGCAGG+CGG | 0.574523 | 8.3:-75862805 | MS.gene072304:CDS |
AACAGGGAATTCAACCAGCA+GGG | 0.580437 | 8.3:-75862582 | MS.gene072304:CDS |
ACCTTTGAATGCTGCTGGCG+AGG | 0.582613 | 8.3:-75862116 | MS.gene072304:CDS |
TGAATGGCTCCATCTGTGGC+GGG | 0.585957 | 8.3:-75862144 | MS.gene072304:CDS |
TTGGACTGAATCCTTCTGAA+AGG | 0.588065 | 8.3:+75861987 | None:intergenic |
AGGAATAGAGGTCAATGTCT+CGG | 0.592016 | 8.3:+75862770 | None:intergenic |
GACACCACATCGTGTTGCAA+AGG | 0.593098 | 8.3:-75863855 | MS.gene072304:CDS |
GCAAATGCTACATCTTCTGG+AGG | 0.595070 | 8.3:-75861710 | MS.gene072304:CDS |
AAGCTGAATGGCTCCATCTG+TGG | 0.597856 | 8.3:-75862148 | MS.gene072304:CDS |
GGTGAAGATATTAATAGGGA+AGG | 0.598277 | 8.3:-75863887 | MS.gene072304:CDS |
AAATGTAATAGTAGTTGTAG+AGG | 0.609306 | 8.3:-75861855 | MS.gene072304:CDS |
CCAAAACGGCAAGTTCAACT+CGG | 0.611977 | 8.3:+75862066 | None:intergenic |
AATAAAATCGGTCATGCTGG+CGG | 0.619283 | 8.3:-75862814 | MS.gene072304:CDS |
CTAGAATCAAGCCTAAAAGG+TGG | 0.619288 | 8.3:-75862502 | MS.gene072304:CDS |
AGAATCAAGCCTAAAAGGTG+GGG | 0.626485 | 8.3:-75862500 | MS.gene072304:CDS |
TAGCAAACAAGATTCACAGT+AGG | 0.626754 | 8.3:+75862750 | None:intergenic |
TTCCAAGTCAAATGTCATGT+CGG | 0.630990 | 8.3:-75862724 | MS.gene072304:CDS |
GCTCTACGTGAAGGAACTAG+AGG | 0.631663 | 8.3:-75863833 | MS.gene072304:intron |
GTTGCAAAGGCTCTACGTGA+AGG | 0.635736 | 8.3:-75863842 | MS.gene072304:CDS |
ACTTCGTCTGCCAGACGCTG+AGG | 0.637304 | 8.3:+75862619 | None:intergenic |
GAACTTCCAAAGCATTGACA+GGG | 0.642979 | 8.3:-75862176 | MS.gene072304:CDS |
ATGGAAAATATTCATGCTCG+GGG | 0.645748 | 8.3:-75862379 | MS.gene072304:CDS |
AAAGCATCCTAACACAGCAA+TGG | 0.646055 | 8.3:+75861775 | None:intergenic |
AGGTTATAGACAAAAGGTGA+AGG | 0.646876 | 8.3:-75862881 | MS.gene072304:CDS |
GTGTGTTCAGCTTTACAACA+GGG | 0.658653 | 8.3:-75862598 | MS.gene072304:CDS |
GTGTAGTGAGGTTGAAGATG+AGG | 0.662975 | 8.3:-75863960 | MS.gene072304:CDS |
AGAGCCTTTGCAACACGATG+TGG | 0.663017 | 8.3:+75863851 | None:intergenic |
CACACATGCATGATTTCTAG+GGG | 0.664632 | 8.3:-75861827 | MS.gene072304:CDS |
TTTGAATGCTGCTGGCGAGG+TGG | 0.672064 | 8.3:-75862113 | MS.gene072304:CDS |
ACAGGGAATTCAACCAGCAG+GGG | 0.676707 | 8.3:-75862581 | MS.gene072304:CDS |
CAAATGCTACATCTTCTGGA+GGG | 0.677186 | 8.3:-75861709 | MS.gene072304:CDS |
ATGTGTACACTGAAGTACAA+CGG | 0.692084 | 8.3:+75862555 | None:intergenic |
TTTCACGGCGTTGTTCACGT+AGG | 0.695497 | 8.3:-75862016 | MS.gene072304:CDS |
CTGCTATTGAAGATGCTGTG+AGG | 0.720934 | 8.3:-75863928 | MS.gene072304:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGTTATTTGTTTAAAAATT+TGG | - | chr8.3:75862042-75862061 | MS.gene072304:CDS | 10.0% |
!!! | TGATGTTTTTTTTTTTTAAT+GGG | - | chr8.3:75862114-75862133 | MS.gene072304:CDS | 10.0% |
!!! | TTGATGTTTTTTTTTTTTAA+TGG | - | chr8.3:75862113-75862132 | MS.gene072304:CDS | 10.0% |
!!! | ATTAATCTTTTAACCATTTT+AGG | - | chr8.3:75862370-75862389 | MS.gene072304:CDS | 15.0% |
!!! | ATTTTCAATTCTAAAATCTT+TGG | - | chr8.3:75863468-75863487 | MS.gene072304:intron | 15.0% |
!!! | TTAATCTTTTAACCATTTTA+GGG | - | chr8.3:75862371-75862390 | MS.gene072304:CDS | 15.0% |
!!! | TTTTATCTTATTAAATCTAG+AGG | - | chr8.3:75863319-75863338 | MS.gene072304:intron | 15.0% |
!!! | TTTTCAATTCTAAAATCTTT+GGG | - | chr8.3:75863469-75863488 | MS.gene072304:intron | 15.0% |
!! | AGTATATGATTAGAACATTA+TGG | - | chr8.3:75862188-75862207 | MS.gene072304:CDS | 20.0% |
!! | GGAAGAGAATAATAATTATT+GGG | + | chr8.3:75862740-75862759 | None:intergenic | 20.0% |
!! | GGCATAGATAATAATAAAAT+CGG | - | chr8.3:75862902-75862921 | MS.gene072304:intron | 20.0% |
!! | TGGAAGAGAATAATAATTAT+TGG | + | chr8.3:75862741-75862760 | None:intergenic | 20.0% |
!!! | TTTTAGAATTGAAAATACTG+CGG | + | chr8.3:75863464-75863483 | None:intergenic | 20.0% |
! | AAAACAAGAGAGCAAATTAT+TGG | + | chr8.3:75862761-75862780 | None:intergenic | 25.0% |
! | AAATGTAATAGTAGTTGTAG+AGG | - | chr8.3:75863873-75863892 | MS.gene072304:CDS | 25.0% |
! | ATATGGAAAATATTCATGCT+CGG | - | chr8.3:75863347-75863366 | MS.gene072304:intron | 25.0% |
! | ATATTCAAACTTCCCTAAAA+TGG | + | chr8.3:75862386-75862405 | None:intergenic | 25.0% |
! | GAAAAATTTGATTGTAGTCA+AGG | - | chr8.3:75862419-75862438 | MS.gene072304:CDS | 25.0% |
! | GTATGGTTCAATATCTAAAT+TGG | - | chr8.3:75862303-75862322 | MS.gene072304:CDS | 25.0% |
! | GTTCAATATCTAAATTGGAT+AGG | - | chr8.3:75862308-75862327 | MS.gene072304:CDS | 25.0% |
! | TATTTAAGTGAGAGATAAAG+AGG | - | chr8.3:75862650-75862669 | MS.gene072304:CDS | 25.0% |
! | TCTTGGTGAAGATATTAATA+GGG | - | chr8.3:75861837-75861856 | MS.gene072304:CDS | 25.0% |
! | TTATCTAGAGATTAATGAGT+TGG | - | chr8.3:75862155-75862174 | MS.gene072304:CDS | 25.0% |
!! | GAACACTAATGATTTTTGTT+TGG | - | chr8.3:75861920-75861939 | MS.gene072304:CDS | 25.0% |
!! | TAAGATTTCTTTCAAGTAGT+TGG | - | chr8.3:75862067-75862086 | MS.gene072304:CDS | 25.0% |
!! | TGTAAAAGTGATTTTCCAAT+TGG | + | chr8.3:75863763-75863782 | None:intergenic | 25.0% |
AAAACAAAAACGCAGACATA+TGG | - | chr8.3:75863287-75863306 | MS.gene072304:intron | 30.0% | |
AAACAAAAACGCAGACATAT+GGG | - | chr8.3:75863288-75863307 | MS.gene072304:intron | 30.0% | |
AATAATAAAATCGGTCATGC+TGG | - | chr8.3:75862911-75862930 | MS.gene072304:intron | 30.0% | |
AATTATTGGGCTGATATGTT+AGG | + | chr8.3:75862727-75862746 | None:intergenic | 30.0% | |
ACGAAAATATTCGATCAACA+GGG | - | chr8.3:75862531-75862550 | MS.gene072304:CDS | 30.0% | |
AGGAAATTCGTGTGATTTAT+TGG | - | chr8.3:75862439-75862458 | MS.gene072304:CDS | 30.0% | |
ATATTAATAGGGAAGGTCTT+AGG | - | chr8.3:75861848-75861867 | MS.gene072304:CDS | 30.0% | |
ATTACATTTCCACCTAAAAG+TGG | + | chr8.3:75863862-75863881 | None:intergenic | 30.0% | |
CAGAAACAAGAGAAAGAAAT+CGG | + | chr8.3:75862689-75862708 | None:intergenic | 30.0% | |
CATCATATACTTCCATTTCA+CGG | - | chr8.3:75863697-75863716 | MS.gene072304:intron | 30.0% | |
GTCTTGGTGAAGATATTAAT+AGG | - | chr8.3:75861836-75861855 | MS.gene072304:CDS | 30.0% | |
TACGAAAATATTCGATCAAC+AGG | - | chr8.3:75862530-75862549 | MS.gene072304:CDS | 30.0% | |
TATGGAAAATATTCATGCTC+GGG | - | chr8.3:75863348-75863367 | MS.gene072304:intron | 30.0% | |
TGCAATACTTTGCAAGAATA+AGG | + | chr8.3:75864001-75864020 | None:intergenic | 30.0% | |
! | AAAATGGAGTGAGTTTGTTT+GGG | - | chr8.3:75861746-75861765 | MS.gene072304:CDS | 30.0% |
! | CAGTCAATAGTGCATTTTTA+TGG | - | chr8.3:75863781-75863800 | MS.gene072304:intron | 30.0% |
! | TTTTCCAGGTTATAGACAAA+AGG | - | chr8.3:75862841-75862860 | MS.gene072304:CDS | 30.0% |
! | TTTTGTCTATAACCTGGAAA+AGG | + | chr8.3:75862842-75862861 | None:intergenic | 30.0% |
!! | AGAAAGATTGTTTCTATGTC+AGG | + | chr8.3:75863208-75863227 | None:intergenic | 30.0% |
!! | ATAGTTTTTCAACTTTCCTG+CGG | - | chr8.3:75862269-75862288 | MS.gene072304:CDS | 30.0% |
!! | TAAATCTAGAGGCATTGATA+TGG | - | chr8.3:75863330-75863349 | MS.gene072304:intron | 30.0% |
!! | TTTCTAGAATCAAGCCTAAA+AGG | - | chr8.3:75863223-75863242 | MS.gene072304:intron | 30.0% |
AAGATTCACAGTAGGAATAG+AGG | + | chr8.3:75862973-75862992 | None:intergenic | 35.0% | |
AAGTGAGAGATAAAGAGGAA+TGG | - | chr8.3:75862655-75862674 | MS.gene072304:CDS | 35.0% | |
AGGAAGTTGTTCATGTTAGT+GGG | - | chr8.3:75862328-75862347 | MS.gene072304:CDS | 35.0% | |
AGGTTATAGACAAAAGGTGA+AGG | - | chr8.3:75862847-75862866 | MS.gene072304:CDS | 35.0% | |
ATAAAACCTTTGAATGCTGC+TGG | - | chr8.3:75863607-75863626 | MS.gene072304:intron | 35.0% | |
ATGGAAAATATTCATGCTCG+GGG | - | chr8.3:75863349-75863368 | MS.gene072304:intron | 35.0% | |
ATGTGTACACTGAAGTACAA+CGG | + | chr8.3:75863176-75863195 | None:intergenic | 35.0% | |
ATTGCAAATGCTACATCTTC+TGG | - | chr8.3:75864015-75864034 | MS.gene072304:CDS | 35.0% | |
CATAGTATGTGATTAGTGCA+TGG | - | chr8.3:75862467-75862486 | MS.gene072304:CDS | 35.0% | |
CATGTTAGTGGGATGTATAT+AGG | - | chr8.3:75862339-75862358 | MS.gene072304:CDS | 35.0% | |
GGTGAAGATATTAATAGGGA+AGG | - | chr8.3:75861841-75861860 | MS.gene072304:CDS | 35.0% | |
GTAGGATATTTCCTTTCAGA+AGG | - | chr8.3:75863730-75863749 | MS.gene072304:intron | 35.0% | |
TACAATGGTGAGCTTGAAAA+TGG | - | chr8.3:75861730-75861749 | MS.gene072304:CDS | 35.0% | |
TAGAATCAAGCCTAAAAGGT+GGG | - | chr8.3:75863227-75863246 | MS.gene072304:intron | 35.0% | |
TAGCAAACAAGATTCACAGT+AGG | + | chr8.3:75862981-75863000 | None:intergenic | 35.0% | |
TAGGAAGTTGTTCATGTTAG+TGG | - | chr8.3:75862327-75862346 | MS.gene072304:CDS | 35.0% | |
TCACACATGCATGATTTCTA+GGG | - | chr8.3:75863900-75863919 | MS.gene072304:CDS | 35.0% | |
TCTAGGGGAATTGAAAAGTT+TGG | - | chr8.3:75863916-75863935 | MS.gene072304:CDS | 35.0% | |
TGCTTAATCCAACAACTCTT+TGG | + | chr8.3:75863045-75863064 | None:intergenic | 35.0% | |
TTATTATCTATGCCAGCTTC+AGG | + | chr8.3:75862896-75862915 | None:intergenic | 35.0% | |
TTCCAAGTCAAATGTCATGT+CGG | - | chr8.3:75863004-75863023 | MS.gene072304:intron | 35.0% | |
TTTCAACTGACATTGCTTCT+AGG | - | chr8.3:75863974-75863993 | MS.gene072304:CDS | 35.0% | |
TTTGATGAGGTGTGTTACAA+TGG | - | chr8.3:75861715-75861734 | MS.gene072304:CDS | 35.0% | |
! | GAAAATGGAGTGAGTTTGTT+TGG | - | chr8.3:75861745-75861764 | MS.gene072304:CDS | 35.0% |
! | TTCACCTTTTGTCTATAACC+TGG | + | chr8.3:75862848-75862867 | None:intergenic | 35.0% |
!! | ACATGACATTTGACTTGGAA+AGG | + | chr8.3:75863004-75863023 | None:intergenic | 35.0% |
!! | GAAACCATATCACCACTTTT+AGG | - | chr8.3:75863847-75863866 | MS.gene072304:CDS | 35.0% |
!!! | GTTTTTGTTTTCAAAGACGC+CGG | + | chr8.3:75863278-75863297 | None:intergenic | 35.0% |
AACCGACATGACATTTGACT+TGG | + | chr8.3:75863009-75863028 | None:intergenic | 40.0% | |
AAGGTGAAGGACATTGTTGA+AGG | - | chr8.3:75862860-75862879 | MS.gene072304:CDS | 40.0% | |
AATAAAATCGGTCATGCTGG+CGG | - | chr8.3:75862914-75862933 | MS.gene072304:intron | 40.0% | |
ACCAAAGTTTCCTCCAAAAC+GGG | - | chr8.3:75863415-75863434 | MS.gene072304:intron | 40.0% | |
AGAATCAAGCCTAAAAGGTG+GGG | - | chr8.3:75863228-75863247 | MS.gene072304:intron | 40.0% | |
AGCCATTTCACGAAACGATT+AGG | + | chr8.3:75863529-75863548 | None:intergenic | 40.0% | |
AGGAATAGAGGTCAATGTCT+CGG | + | chr8.3:75862961-75862980 | None:intergenic | 40.0% | |
AGTGTGTTCAGCTTTACAAC+AGG | - | chr8.3:75863129-75863148 | MS.gene072304:intron | 40.0% | |
ATACATGTTTCGTCAGGTTC+CGG | - | chr8.3:75863256-75863275 | MS.gene072304:intron | 40.0% | |
CAAATGCTACATCTTCTGGA+GGG | - | chr8.3:75864019-75864038 | MS.gene072304:CDS | 40.0% | |
CACCAAAGTTTCCTCCAAAA+CGG | - | chr8.3:75863414-75863433 | MS.gene072304:intron | 40.0% | |
CATACACAATTCTATTCCGC+AGG | + | chr8.3:75862288-75862307 | None:intergenic | 40.0% | |
CTAGAATCAAGCCTAAAAGG+TGG | - | chr8.3:75863226-75863245 | MS.gene072304:intron | 40.0% | |
CTCCTAATCGTTTCGTGAAA+TGG | - | chr8.3:75863524-75863543 | MS.gene072304:intron | 40.0% | |
CTGCGGAATAGAATTGTGTA+TGG | - | chr8.3:75862286-75862305 | MS.gene072304:CDS | 40.0% | |
GTCACACATGCATGATTTCT+AGG | - | chr8.3:75863899-75863918 | MS.gene072304:CDS | 40.0% | |
GTGAAGATACATGTTTCGTC+AGG | - | chr8.3:75863250-75863269 | MS.gene072304:intron | 40.0% | |
GTGTGTTCAGCTTTACAACA+GGG | - | chr8.3:75863130-75863149 | MS.gene072304:intron | 40.0% | |
TCAGAAGGATTCAGTCCAAT+TGG | - | chr8.3:75863745-75863764 | MS.gene072304:intron | 40.0% | |
TCCACCTAAAAGTGGTGATA+TGG | + | chr8.3:75863854-75863873 | None:intergenic | 40.0% | |
TGCTCACATTGTGACCAAAA+CGG | + | chr8.3:75863679-75863698 | None:intergenic | 40.0% | |
TTGGACTGAATCCTTCTGAA+AGG | + | chr8.3:75863744-75863763 | None:intergenic | 40.0% | |
TTGTAAGCCTTTCCTGAACT+TGG | + | chr8.3:75863816-75863835 | None:intergenic | 40.0% | |
! | AAAGCATCCTAACACAGCAA+TGG | + | chr8.3:75863956-75863975 | None:intergenic | 40.0% |
! | AGGATTCTTTTGTTGGGTCT+TGG | - | chr8.3:75861820-75861839 | MS.gene072304:CDS | 40.0% |
! | CACACATGCATGATTTCTAG+GGG | - | chr8.3:75863901-75863920 | MS.gene072304:CDS | 40.0% |
! | CTTTGGGAGAAGATTCAGTT+AGG | - | chr8.3:75863485-75863504 | MS.gene072304:intron | 40.0% |
! | GCTGTGAGGATTCTTTTGTT+GGG | - | chr8.3:75861814-75861833 | MS.gene072304:CDS | 40.0% |
! | TGAAGCAATGAACCTTTTCC+AGG | - | chr8.3:75862827-75862846 | MS.gene072304:CDS | 40.0% |
! | TGCTGTGAGGATTCTTTTGT+TGG | - | chr8.3:75861813-75861832 | MS.gene072304:CDS | 40.0% |
!! | ACCATATCACCACTTTTAGG+TGG | - | chr8.3:75863850-75863869 | MS.gene072304:CDS | 40.0% |
!! | GAACTTCCAAAGCATTGACA+GGG | - | chr8.3:75863552-75863571 | MS.gene072304:intron | 40.0% |
!! | TGAACTTCCAAAGCATTGAC+AGG | - | chr8.3:75863551-75863570 | MS.gene072304:intron | 40.0% |
AACAGGGAATTCAACCAGCA+GGG | - | chr8.3:75863146-75863165 | MS.gene072304:intron | 45.0% | |
AAGAGCCAATGCTCAACACA+GGG | + | chr8.3:75862603-75862622 | None:intergenic | 45.0% | |
AATACTGCGGTGATCATTGC+CGG | + | chr8.3:75863451-75863470 | None:intergenic | 45.0% | |
ACAGCTACCATTGCTGTGTT+AGG | - | chr8.3:75863946-75863965 | MS.gene072304:CDS | 45.0% | |
CAAAACGGGACCTATCAATC+CGG | - | chr8.3:75863429-75863448 | MS.gene072304:intron | 45.0% | |
CAACAACTCTTTGGCCAGAA+GGG | + | chr8.3:75863036-75863055 | None:intergenic | 45.0% | |
CCAAAACGGCAAGTTCAACT+CGG | + | chr8.3:75863665-75863684 | None:intergenic | 45.0% | |
CTGCTATTGAAGATGCTGTG+AGG | - | chr8.3:75861800-75861819 | MS.gene072304:CDS | 45.0% | |
GCAAATGCTACATCTTCTGG+AGG | - | chr8.3:75864018-75864037 | MS.gene072304:CDS | 45.0% | |
GGAAACTTTGGTGGAAAGAG+TGG | + | chr8.3:75863407-75863426 | None:intergenic | 45.0% | |
GGGAGAAGATTCAGTTAGGA+AGG | - | chr8.3:75863489-75863508 | MS.gene072304:intron | 45.0% | |
GTGATCATTGCCGGATTGAT+AGG | + | chr8.3:75863442-75863461 | None:intergenic | 45.0% | |
GTGTAGTGAGGTTGAAGATG+AGG | - | chr8.3:75861768-75861787 | MS.gene072304:CDS | 45.0% | |
TAAGAGCCAATGCTCAACAC+AGG | + | chr8.3:75862604-75862623 | None:intergenic | 45.0% | |
TCAAGCTCCAAGTTCAGGAA+AGG | - | chr8.3:75863806-75863825 | MS.gene072304:intron | 45.0% | |
TCACATCCCTGTCAATGCTT+TGG | + | chr8.3:75863561-75863580 | None:intergenic | 45.0% | |
TGGTTTCAAGCTCCAAGTTC+AGG | - | chr8.3:75863801-75863820 | MS.gene072304:intron | 45.0% | |
TTGTACCCTGTGTTGAGCAT+TGG | - | chr8.3:75862595-75862614 | MS.gene072304:CDS | 45.0% | |
! | AAGCCTTATCCCACTAAGTG+GGG | + | chr8.3:75862237-75862256 | None:intergenic | 45.0% |
! | ATTGATAGGTCCCGTTTTGG+AGG | + | chr8.3:75863428-75863447 | None:intergenic | 45.0% |
! | CAAGCCTTATCCCACTAAGT+GGG | + | chr8.3:75862238-75862257 | None:intergenic | 45.0% |
! | GAGTTTGTTTGGGTGTAGTG+AGG | - | chr8.3:75861756-75861775 | MS.gene072304:CDS | 45.0% |
! | GTATCTTCACCCCACCTTTT+AGG | + | chr8.3:75863240-75863259 | None:intergenic | 45.0% |
!! | GGTGCTTTATTTCCTGAAGC+TGG | - | chr8.3:75862881-75862900 | MS.gene072304:CDS | 45.0% |
!!! | CGTTTTGGAGGAAACTTTGG+TGG | + | chr8.3:75863416-75863435 | None:intergenic | 45.0% |
!!! | TCCCGTTTTGGAGGAAACTT+TGG | + | chr8.3:75863419-75863438 | None:intergenic | 45.0% |
AAGCTGAATGGCTCCATCTG+TGG | - | chr8.3:75863580-75863599 | MS.gene072304:intron | 50.0% | |
ACAGGGAATTCAACCAGCAG+GGG | - | chr8.3:75863147-75863166 | MS.gene072304:intron | 50.0% | |
ACGTGAACAACGCCGTGAAA+TGG | + | chr8.3:75863712-75863731 | None:intergenic | 50.0% | |
ACTAAGTGGGGTCAGCTACA+TGG | + | chr8.3:75862225-75862244 | None:intergenic | 50.0% | |
AGAGAGATGGACACCAGCAT+TGG | + | chr8.3:75863384-75863403 | None:intergenic | 50.0% | |
AGAGCCTTTGCAACACGATG+TGG | + | chr8.3:75861880-75861899 | None:intergenic | 50.0% | |
ATGTAGCTGACCCCACTTAG+TGG | - | chr8.3:75862224-75862243 | MS.gene072304:CDS | 50.0% | |
CAACAGGGAATTCAACCAGC+AGG | - | chr8.3:75863145-75863164 | MS.gene072304:intron | 50.0% | |
CAGTTAGGAAGGAGCTTGCA+GGG | - | chr8.3:75863500-75863519 | MS.gene072304:intron | 50.0% | |
CCAACAACTCTTTGGCCAGA+AGG | + | chr8.3:75863037-75863056 | None:intergenic | 50.0% | |
CCACTTAGTGGGATAAGGCT+TGG | - | chr8.3:75862236-75862255 | MS.gene072304:CDS | 50.0% | |
CCTTCTGGCCAAAGAGTTGT+TGG | - | chr8.3:75863034-75863053 | MS.gene072304:intron | 50.0% | |
GACACCACATCGTGTTGCAA+AGG | - | chr8.3:75861873-75861892 | MS.gene072304:CDS | 50.0% | |
GACAGGGATGTGAAGCTGAA+TGG | - | chr8.3:75863568-75863587 | MS.gene072304:intron | 50.0% | |
GCTCTACGTGAAGGAACTAG+AGG | - | chr8.3:75861895-75861914 | MS.gene072304:CDS | 50.0% | |
GTGCATGGAGAGATGTTCTG+AGG | - | chr8.3:75862482-75862501 | MS.gene072304:CDS | 50.0% | |
GTGGAAAGAGTGGAGAGAGA+TGG | + | chr8.3:75863397-75863416 | None:intergenic | 50.0% | |
GTTGCAAAGGCTCTACGTGA+AGG | - | chr8.3:75861886-75861905 | MS.gene072304:CDS | 50.0% | |
TCAGTTAGGAAGGAGCTTGC+AGG | - | chr8.3:75863499-75863518 | MS.gene072304:intron | 50.0% | |
TGACCCCACTTAGTGGGATA+AGG | - | chr8.3:75862231-75862250 | MS.gene072304:CDS | 50.0% | |
TGTAGCTGACCCCACTTAGT+GGG | - | chr8.3:75862225-75862244 | MS.gene072304:CDS | 50.0% | |
TTTCACGGCGTTGTTCACGT+AGG | - | chr8.3:75863712-75863731 | MS.gene072304:intron | 50.0% | |
! | CCAAGCCTTATCCCACTAAG+TGG | + | chr8.3:75862239-75862258 | None:intergenic | 50.0% |
! | CGGATTGATAGGTCCCGTTT+TGG | + | chr8.3:75863431-75863450 | None:intergenic | 50.0% |
!! | AGGTTTTATCCCGCCACAGA+TGG | + | chr8.3:75863596-75863615 | None:intergenic | 50.0% |
!! | CCGAGTTGAACTTGCCGTTT+TGG | - | chr8.3:75863662-75863681 | MS.gene072304:intron | 50.0% |
ACCTCGCCAGCAGCATTCAA+AGG | + | chr8.3:75863616-75863635 | None:intergenic | 55.0% | |
ACCTTTGAATGCTGCTGGCG+AGG | - | chr8.3:75863612-75863631 | MS.gene072304:intron | 55.0% | |
ACTTCAAGAGCCTCAGCGTC+TGG | - | chr8.3:75863099-75863118 | MS.gene072304:intron | 55.0% | |
CTGAATGGCTCCATCTGTGG+CGG | - | chr8.3:75863583-75863602 | MS.gene072304:intron | 55.0% | |
TGAATGGCTCCATCTGTGGC+GGG | - | chr8.3:75863584-75863603 | MS.gene072304:intron | 55.0% | |
TTTGAATGCTGCTGGCGAGG+TGG | - | chr8.3:75863615-75863634 | MS.gene072304:intron | 55.0% | |
! | CATGTCGGTTACGTCCCTTC+TGG | - | chr8.3:75863019-75863038 | MS.gene072304:intron | 55.0% |
!! | GATGGACACCAGCATTGGTC+AGG | + | chr8.3:75863379-75863398 | None:intergenic | 55.0% |
ACTTCGTCTGCCAGACGCTG+AGG | + | chr8.3:75863112-75863131 | None:intergenic | 60.0% | |
AGTACAACGGCAACCCCTGC+TGG | + | chr8.3:75863163-75863182 | None:intergenic | 60.0% | |
GGGGATTGCCTGACCAATGC+TGG | - | chr8.3:75863368-75863387 | MS.gene072304:intron | 60.0% | |
ATCGGTCATGCTGGCGGTGC+AGG | - | chr8.3:75862920-75862939 | MS.gene072304:intron | 65.0% | |
GGTCATGCTGGCGGTGCAGG+CGG | - | chr8.3:75862923-75862942 | MS.gene072304:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 75861706 | 75864044 | 75861706 | ID=MS.gene072304 |
chr8.3 | mRNA | 75861706 | 75864044 | 75861706 | ID=MS.gene072304.t1;Parent=MS.gene072304 |
chr8.3 | exon | 75863834 | 75864044 | 75863834 | ID=MS.gene072304.t1.exon1;Parent=MS.gene072304.t1 |
chr8.3 | CDS | 75863834 | 75864044 | 75863834 | ID=cds.MS.gene072304.t1;Parent=MS.gene072304.t1 |
chr8.3 | exon | 75861706 | 75862901 | 75861706 | ID=MS.gene072304.t1.exon2;Parent=MS.gene072304.t1 |
chr8.3 | CDS | 75861706 | 75862901 | 75861706 | ID=cds.MS.gene072304.t1;Parent=MS.gene072304.t1 |
Gene Sequence |
Protein sequence |