AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072304


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072304.t1 MTR_8g012570 96.795 468 12 1 1 468 1 465 0.0 931
MS.gene072304.t1 MTR_7g055700 74.034 466 109 3 1 466 1 454 0.0 704
MS.gene072304.t1 MTR_8g016030 70.716 461 119 7 1 458 1 448 0.0 622
MS.gene072304.t1 MTR_7g055700 74.640 347 85 1 120 466 1 344 0.0 534
MS.gene072304.t1 MTR_7g060730 67.890 109 28 3 49 153 3 108 1.07e-41 144
MS.gene072304.t1 MTR_7g060740 53.077 130 40 3 186 315 3 111 8.90e-35 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072304.t1 AT3G07270 60.814 467 161 10 1 460 1 452 0.0 546
MS.gene072304.t1 AT3G07270 60.600 467 162 10 1 460 1 452 0.0 542

Find 109 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAACTGACATTGCTTCT+AGG 0.247277 8.3:-75861754 MS.gene072304:CDS
TCCACCTAAAAGTGGTGATA+TGG 0.266701 8.3:+75861877 None:intergenic
ATTGCAAATGCTACATCTTC+TGG 0.267208 8.3:-75861713 MS.gene072304:CDS
TGCAATACTTTGCAAGAATA+AGG 0.267255 8.3:+75861730 None:intergenic
TTTCTAGAATCAAGCCTAAA+AGG 0.282324 8.3:-75862505 MS.gene072304:CDS
GTCTTGGTGAAGATATTAAT+AGG 0.315735 8.3:-75863892 MS.gene072304:CDS
TGCTTAATCCAACAACTCTT+TGG 0.318636 8.3:+75862686 None:intergenic
TCTAGGGGAATTGAAAAGTT+TGG 0.319552 8.3:-75861812 MS.gene072304:CDS
TAAATCTAGAGGCATTGATA+TGG 0.321920 8.3:-75862398 MS.gene072304:CDS
TTATTATCTATGCCAGCTTC+AGG 0.326221 8.3:+75862835 None:intergenic
ATACATGTTTCGTCAGGTTC+CGG 0.333764 8.3:-75862472 MS.gene072304:CDS
GAAAATGGAGTGAGTTTGTT+TGG 0.336188 8.3:-75863983 MS.gene072304:CDS
CGGATTGATAGGTCCCGTTT+TGG 0.343833 8.3:+75862300 None:intergenic
GTCACACATGCATGATTTCT+AGG 0.349323 8.3:-75861829 MS.gene072304:CDS
CCGAGTTGAACTTGCCGTTT+TGG 0.352393 8.3:-75862066 MS.gene072304:CDS
AGAAAGATTGTTTCTATGTC+AGG 0.355506 8.3:+75862523 None:intergenic
CTCCTAATCGTTTCGTGAAA+TGG 0.361018 8.3:-75862204 MS.gene072304:CDS
TGGTTTCAAGCTCCAAGTTC+AGG 0.361526 8.3:-75861927 MS.gene072304:CDS
ACGTGAACAACGCCGTGAAA+TGG 0.371684 8.3:+75862019 None:intergenic
GTGATCATTGCCGGATTGAT+AGG 0.375935 8.3:+75862289 None:intergenic
TCACATCCCTGTCAATGCTT+TGG 0.377050 8.3:+75862170 None:intergenic
TTGTAAGCCTTTCCTGAACT+TGG 0.378188 8.3:+75861915 None:intergenic
TCAGTTAGGAAGGAGCTTGC+AGG 0.382040 8.3:-75862229 MS.gene072304:CDS
CATGTCGGTTACGTCCCTTC+TGG 0.382316 8.3:-75862709 MS.gene072304:CDS
ATCGGTCATGCTGGCGGTGC+AGG 0.382420 8.3:-75862808 MS.gene072304:CDS
TACAATGGTGAGCTTGAAAA+TGG 0.382873 8.3:-75863998 MS.gene072304:CDS
CCTTCTGGCCAAAGAGTTGT+TGG 0.387250 8.3:-75862694 MS.gene072304:CDS
GGCATAGATAATAATAAAAT+CGG 0.400523 8.3:-75862826 MS.gene072304:CDS
CACCAAAGTTTCCTCCAAAA+CGG 0.401213 8.3:-75862314 MS.gene072304:CDS
ACCAAAGTTTCCTCCAAAAC+GGG 0.409382 8.3:-75862313 MS.gene072304:CDS
TCAGAAGGATTCAGTCCAAT+TGG 0.411941 8.3:-75861983 MS.gene072304:CDS
ACAGCTACCATTGCTGTGTT+AGG 0.412616 8.3:-75861782 MS.gene072304:CDS
ATATTAATAGGGAAGGTCTT+AGG 0.430481 8.3:-75863880 MS.gene072304:CDS
AGCCATTTCACGAAACGATT+AGG 0.432174 8.3:+75862202 None:intergenic
CTTTGGGAGAAGATTCAGTT+AGG 0.436286 8.3:-75862243 MS.gene072304:CDS
ACTTCAAGAGCCTCAGCGTC+TGG 0.438758 8.3:-75862629 MS.gene072304:CDS
AAAATGGAGTGAGTTTGTTT+GGG 0.453831 8.3:-75863982 MS.gene072304:CDS
AATACTGCGGTGATCATTGC+CGG 0.455043 8.3:+75862280 None:intergenic
AGTGTGTTCAGCTTTACAAC+AGG 0.460100 8.3:-75862599 MS.gene072304:CDS
GGTGCTTTATTTCCTGAAGC+TGG 0.460502 8.3:-75862847 MS.gene072304:CDS
AATAATAAAATCGGTCATGC+TGG 0.461804 8.3:-75862817 MS.gene072304:CDS
GATGGACACCAGCATTGGTC+AGG 0.472338 8.3:+75862352 None:intergenic
TATGGAAAATATTCATGCTC+GGG 0.478199 8.3:-75862380 MS.gene072304:CDS
GGGGATTGCCTGACCAATGC+TGG 0.478425 8.3:-75862360 MS.gene072304:CDS
CATCATATACTTCCATTTCA+CGG 0.483542 8.3:-75862031 MS.gene072304:CDS
TCTTGGTGAAGATATTAATA+GGG 0.485627 8.3:-75863891 MS.gene072304:CDS
TGAACTTCCAAAGCATTGAC+AGG 0.490128 8.3:-75862177 MS.gene072304:CDS
GGGAGAAGATTCAGTTAGGA+AGG 0.492445 8.3:-75862239 MS.gene072304:CDS
GTGAAGATACATGTTTCGTC+AGG 0.495703 8.3:-75862478 MS.gene072304:CDS
GGAAACTTTGGTGGAAAGAG+TGG 0.500080 8.3:+75862324 None:intergenic
AGTACAACGGCAACCCCTGC+TGG 0.507814 8.3:+75862568 None:intergenic
AACCGACATGACATTTGACT+TGG 0.512030 8.3:+75862722 None:intergenic
GTGGAAAGAGTGGAGAGAGA+TGG 0.512679 8.3:+75862334 None:intergenic
ATTACATTTCCACCTAAAAG+TGG 0.515978 8.3:+75861869 None:intergenic
ATAAAACCTTTGAATGCTGC+TGG 0.516330 8.3:-75862121 MS.gene072304:CDS
CAACAGGGAATTCAACCAGC+AGG 0.521643 8.3:-75862583 MS.gene072304:CDS
GTAGGATATTTCCTTTCAGA+AGG 0.523652 8.3:-75861998 MS.gene072304:CDS
TCACACATGCATGATTTCTA+GGG 0.524065 8.3:-75861828 MS.gene072304:CDS
ATATGGAAAATATTCATGCT+CGG 0.536544 8.3:-75862381 MS.gene072304:CDS
CAGTTAGGAAGGAGCTTGCA+GGG 0.539632 8.3:-75862228 MS.gene072304:CDS
CAAAACGGGACCTATCAATC+CGG 0.547377 8.3:-75862299 MS.gene072304:CDS
ACATGACATTTGACTTGGAA+AGG 0.549188 8.3:+75862727 None:intergenic
TCAAGCTCCAAGTTCAGGAA+AGG 0.552246 8.3:-75861922 MS.gene072304:CDS
TGCTCACATTGTGACCAAAA+CGG 0.553718 8.3:+75862052 None:intergenic
AAGATTCACAGTAGGAATAG+AGG 0.553746 8.3:+75862758 None:intergenic
ACCTCGCCAGCAGCATTCAA+AGG 0.556508 8.3:+75862115 None:intergenic
TAGAATCAAGCCTAAAAGGT+GGG 0.558239 8.3:-75862501 MS.gene072304:CDS
CAACAACTCTTTGGCCAGAA+GGG 0.562430 8.3:+75862695 None:intergenic
GAGTTTGTTTGGGTGTAGTG+AGG 0.562917 8.3:-75863972 MS.gene072304:CDS
AAGGTGAAGGACATTGTTGA+AGG 0.564141 8.3:-75862868 MS.gene072304:CDS
TTTGATGAGGTGTGTTACAA+TGG 0.564966 8.3:-75864013 MS.gene072304:CDS
AGAGAGATGGACACCAGCAT+TGG 0.567275 8.3:+75862347 None:intergenic
GACAGGGATGTGAAGCTGAA+TGG 0.568364 8.3:-75862160 MS.gene072304:CDS
CTGAATGGCTCCATCTGTGG+CGG 0.572648 8.3:-75862145 MS.gene072304:CDS
CCAACAACTCTTTGGCCAGA+AGG 0.572834 8.3:+75862694 None:intergenic
GGTCATGCTGGCGGTGCAGG+CGG 0.574523 8.3:-75862805 MS.gene072304:CDS
AACAGGGAATTCAACCAGCA+GGG 0.580437 8.3:-75862582 MS.gene072304:CDS
ACCTTTGAATGCTGCTGGCG+AGG 0.582613 8.3:-75862116 MS.gene072304:CDS
TGAATGGCTCCATCTGTGGC+GGG 0.585957 8.3:-75862144 MS.gene072304:CDS
TTGGACTGAATCCTTCTGAA+AGG 0.588065 8.3:+75861987 None:intergenic
AGGAATAGAGGTCAATGTCT+CGG 0.592016 8.3:+75862770 None:intergenic
GACACCACATCGTGTTGCAA+AGG 0.593098 8.3:-75863855 MS.gene072304:CDS
GCAAATGCTACATCTTCTGG+AGG 0.595070 8.3:-75861710 MS.gene072304:CDS
AAGCTGAATGGCTCCATCTG+TGG 0.597856 8.3:-75862148 MS.gene072304:CDS
GGTGAAGATATTAATAGGGA+AGG 0.598277 8.3:-75863887 MS.gene072304:CDS
AAATGTAATAGTAGTTGTAG+AGG 0.609306 8.3:-75861855 MS.gene072304:CDS
CCAAAACGGCAAGTTCAACT+CGG 0.611977 8.3:+75862066 None:intergenic
AATAAAATCGGTCATGCTGG+CGG 0.619283 8.3:-75862814 MS.gene072304:CDS
CTAGAATCAAGCCTAAAAGG+TGG 0.619288 8.3:-75862502 MS.gene072304:CDS
AGAATCAAGCCTAAAAGGTG+GGG 0.626485 8.3:-75862500 MS.gene072304:CDS
TAGCAAACAAGATTCACAGT+AGG 0.626754 8.3:+75862750 None:intergenic
TTCCAAGTCAAATGTCATGT+CGG 0.630990 8.3:-75862724 MS.gene072304:CDS
GCTCTACGTGAAGGAACTAG+AGG 0.631663 8.3:-75863833 MS.gene072304:intron
GTTGCAAAGGCTCTACGTGA+AGG 0.635736 8.3:-75863842 MS.gene072304:CDS
ACTTCGTCTGCCAGACGCTG+AGG 0.637304 8.3:+75862619 None:intergenic
GAACTTCCAAAGCATTGACA+GGG 0.642979 8.3:-75862176 MS.gene072304:CDS
ATGGAAAATATTCATGCTCG+GGG 0.645748 8.3:-75862379 MS.gene072304:CDS
AAAGCATCCTAACACAGCAA+TGG 0.646055 8.3:+75861775 None:intergenic
AGGTTATAGACAAAAGGTGA+AGG 0.646876 8.3:-75862881 MS.gene072304:CDS
GTGTGTTCAGCTTTACAACA+GGG 0.658653 8.3:-75862598 MS.gene072304:CDS
GTGTAGTGAGGTTGAAGATG+AGG 0.662975 8.3:-75863960 MS.gene072304:CDS
AGAGCCTTTGCAACACGATG+TGG 0.663017 8.3:+75863851 None:intergenic
CACACATGCATGATTTCTAG+GGG 0.664632 8.3:-75861827 MS.gene072304:CDS
TTTGAATGCTGCTGGCGAGG+TGG 0.672064 8.3:-75862113 MS.gene072304:CDS
ACAGGGAATTCAACCAGCAG+GGG 0.676707 8.3:-75862581 MS.gene072304:CDS
CAAATGCTACATCTTCTGGA+GGG 0.677186 8.3:-75861709 MS.gene072304:CDS
ATGTGTACACTGAAGTACAA+CGG 0.692084 8.3:+75862555 None:intergenic
TTTCACGGCGTTGTTCACGT+AGG 0.695497 8.3:-75862016 MS.gene072304:CDS
CTGCTATTGAAGATGCTGTG+AGG 0.720934 8.3:-75863928 MS.gene072304:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTATTTGTTTAAAAATT+TGG - chr8.3:75862042-75862061 MS.gene072304:CDS 10.0%
!!! TGATGTTTTTTTTTTTTAAT+GGG - chr8.3:75862114-75862133 MS.gene072304:CDS 10.0%
!!! TTGATGTTTTTTTTTTTTAA+TGG - chr8.3:75862113-75862132 MS.gene072304:CDS 10.0%
!!! ATTAATCTTTTAACCATTTT+AGG - chr8.3:75862370-75862389 MS.gene072304:CDS 15.0%
!!! ATTTTCAATTCTAAAATCTT+TGG - chr8.3:75863468-75863487 MS.gene072304:intron 15.0%
!!! TTAATCTTTTAACCATTTTA+GGG - chr8.3:75862371-75862390 MS.gene072304:CDS 15.0%
!!! TTTTATCTTATTAAATCTAG+AGG - chr8.3:75863319-75863338 MS.gene072304:intron 15.0%
!!! TTTTCAATTCTAAAATCTTT+GGG - chr8.3:75863469-75863488 MS.gene072304:intron 15.0%
!! AGTATATGATTAGAACATTA+TGG - chr8.3:75862188-75862207 MS.gene072304:CDS 20.0%
!! GGAAGAGAATAATAATTATT+GGG + chr8.3:75862740-75862759 None:intergenic 20.0%
!! GGCATAGATAATAATAAAAT+CGG - chr8.3:75862902-75862921 MS.gene072304:intron 20.0%
!! TGGAAGAGAATAATAATTAT+TGG + chr8.3:75862741-75862760 None:intergenic 20.0%
!!! TTTTAGAATTGAAAATACTG+CGG + chr8.3:75863464-75863483 None:intergenic 20.0%
! AAAACAAGAGAGCAAATTAT+TGG + chr8.3:75862761-75862780 None:intergenic 25.0%
! AAATGTAATAGTAGTTGTAG+AGG - chr8.3:75863873-75863892 MS.gene072304:CDS 25.0%
! ATATGGAAAATATTCATGCT+CGG - chr8.3:75863347-75863366 MS.gene072304:intron 25.0%
! ATATTCAAACTTCCCTAAAA+TGG + chr8.3:75862386-75862405 None:intergenic 25.0%
! GAAAAATTTGATTGTAGTCA+AGG - chr8.3:75862419-75862438 MS.gene072304:CDS 25.0%
! GTATGGTTCAATATCTAAAT+TGG - chr8.3:75862303-75862322 MS.gene072304:CDS 25.0%
! GTTCAATATCTAAATTGGAT+AGG - chr8.3:75862308-75862327 MS.gene072304:CDS 25.0%
! TATTTAAGTGAGAGATAAAG+AGG - chr8.3:75862650-75862669 MS.gene072304:CDS 25.0%
! TCTTGGTGAAGATATTAATA+GGG - chr8.3:75861837-75861856 MS.gene072304:CDS 25.0%
! TTATCTAGAGATTAATGAGT+TGG - chr8.3:75862155-75862174 MS.gene072304:CDS 25.0%
!! GAACACTAATGATTTTTGTT+TGG - chr8.3:75861920-75861939 MS.gene072304:CDS 25.0%
!! TAAGATTTCTTTCAAGTAGT+TGG - chr8.3:75862067-75862086 MS.gene072304:CDS 25.0%
!! TGTAAAAGTGATTTTCCAAT+TGG + chr8.3:75863763-75863782 None:intergenic 25.0%
AAAACAAAAACGCAGACATA+TGG - chr8.3:75863287-75863306 MS.gene072304:intron 30.0%
AAACAAAAACGCAGACATAT+GGG - chr8.3:75863288-75863307 MS.gene072304:intron 30.0%
AATAATAAAATCGGTCATGC+TGG - chr8.3:75862911-75862930 MS.gene072304:intron 30.0%
AATTATTGGGCTGATATGTT+AGG + chr8.3:75862727-75862746 None:intergenic 30.0%
ACGAAAATATTCGATCAACA+GGG - chr8.3:75862531-75862550 MS.gene072304:CDS 30.0%
AGGAAATTCGTGTGATTTAT+TGG - chr8.3:75862439-75862458 MS.gene072304:CDS 30.0%
ATATTAATAGGGAAGGTCTT+AGG - chr8.3:75861848-75861867 MS.gene072304:CDS 30.0%
ATTACATTTCCACCTAAAAG+TGG + chr8.3:75863862-75863881 None:intergenic 30.0%
CAGAAACAAGAGAAAGAAAT+CGG + chr8.3:75862689-75862708 None:intergenic 30.0%
CATCATATACTTCCATTTCA+CGG - chr8.3:75863697-75863716 MS.gene072304:intron 30.0%
GTCTTGGTGAAGATATTAAT+AGG - chr8.3:75861836-75861855 MS.gene072304:CDS 30.0%
TACGAAAATATTCGATCAAC+AGG - chr8.3:75862530-75862549 MS.gene072304:CDS 30.0%
TATGGAAAATATTCATGCTC+GGG - chr8.3:75863348-75863367 MS.gene072304:intron 30.0%
TGCAATACTTTGCAAGAATA+AGG + chr8.3:75864001-75864020 None:intergenic 30.0%
! AAAATGGAGTGAGTTTGTTT+GGG - chr8.3:75861746-75861765 MS.gene072304:CDS 30.0%
! CAGTCAATAGTGCATTTTTA+TGG - chr8.3:75863781-75863800 MS.gene072304:intron 30.0%
! TTTTCCAGGTTATAGACAAA+AGG - chr8.3:75862841-75862860 MS.gene072304:CDS 30.0%
! TTTTGTCTATAACCTGGAAA+AGG + chr8.3:75862842-75862861 None:intergenic 30.0%
!! AGAAAGATTGTTTCTATGTC+AGG + chr8.3:75863208-75863227 None:intergenic 30.0%
!! ATAGTTTTTCAACTTTCCTG+CGG - chr8.3:75862269-75862288 MS.gene072304:CDS 30.0%
!! TAAATCTAGAGGCATTGATA+TGG - chr8.3:75863330-75863349 MS.gene072304:intron 30.0%
!! TTTCTAGAATCAAGCCTAAA+AGG - chr8.3:75863223-75863242 MS.gene072304:intron 30.0%
AAGATTCACAGTAGGAATAG+AGG + chr8.3:75862973-75862992 None:intergenic 35.0%
AAGTGAGAGATAAAGAGGAA+TGG - chr8.3:75862655-75862674 MS.gene072304:CDS 35.0%
AGGAAGTTGTTCATGTTAGT+GGG - chr8.3:75862328-75862347 MS.gene072304:CDS 35.0%
AGGTTATAGACAAAAGGTGA+AGG - chr8.3:75862847-75862866 MS.gene072304:CDS 35.0%
ATAAAACCTTTGAATGCTGC+TGG - chr8.3:75863607-75863626 MS.gene072304:intron 35.0%
ATGGAAAATATTCATGCTCG+GGG - chr8.3:75863349-75863368 MS.gene072304:intron 35.0%
ATGTGTACACTGAAGTACAA+CGG + chr8.3:75863176-75863195 None:intergenic 35.0%
ATTGCAAATGCTACATCTTC+TGG - chr8.3:75864015-75864034 MS.gene072304:CDS 35.0%
CATAGTATGTGATTAGTGCA+TGG - chr8.3:75862467-75862486 MS.gene072304:CDS 35.0%
CATGTTAGTGGGATGTATAT+AGG - chr8.3:75862339-75862358 MS.gene072304:CDS 35.0%
GGTGAAGATATTAATAGGGA+AGG - chr8.3:75861841-75861860 MS.gene072304:CDS 35.0%
GTAGGATATTTCCTTTCAGA+AGG - chr8.3:75863730-75863749 MS.gene072304:intron 35.0%
TACAATGGTGAGCTTGAAAA+TGG - chr8.3:75861730-75861749 MS.gene072304:CDS 35.0%
TAGAATCAAGCCTAAAAGGT+GGG - chr8.3:75863227-75863246 MS.gene072304:intron 35.0%
TAGCAAACAAGATTCACAGT+AGG + chr8.3:75862981-75863000 None:intergenic 35.0%
TAGGAAGTTGTTCATGTTAG+TGG - chr8.3:75862327-75862346 MS.gene072304:CDS 35.0%
TCACACATGCATGATTTCTA+GGG - chr8.3:75863900-75863919 MS.gene072304:CDS 35.0%
TCTAGGGGAATTGAAAAGTT+TGG - chr8.3:75863916-75863935 MS.gene072304:CDS 35.0%
TGCTTAATCCAACAACTCTT+TGG + chr8.3:75863045-75863064 None:intergenic 35.0%
TTATTATCTATGCCAGCTTC+AGG + chr8.3:75862896-75862915 None:intergenic 35.0%
TTCCAAGTCAAATGTCATGT+CGG - chr8.3:75863004-75863023 MS.gene072304:intron 35.0%
TTTCAACTGACATTGCTTCT+AGG - chr8.3:75863974-75863993 MS.gene072304:CDS 35.0%
TTTGATGAGGTGTGTTACAA+TGG - chr8.3:75861715-75861734 MS.gene072304:CDS 35.0%
! GAAAATGGAGTGAGTTTGTT+TGG - chr8.3:75861745-75861764 MS.gene072304:CDS 35.0%
! TTCACCTTTTGTCTATAACC+TGG + chr8.3:75862848-75862867 None:intergenic 35.0%
!! ACATGACATTTGACTTGGAA+AGG + chr8.3:75863004-75863023 None:intergenic 35.0%
!! GAAACCATATCACCACTTTT+AGG - chr8.3:75863847-75863866 MS.gene072304:CDS 35.0%
!!! GTTTTTGTTTTCAAAGACGC+CGG + chr8.3:75863278-75863297 None:intergenic 35.0%
AACCGACATGACATTTGACT+TGG + chr8.3:75863009-75863028 None:intergenic 40.0%
AAGGTGAAGGACATTGTTGA+AGG - chr8.3:75862860-75862879 MS.gene072304:CDS 40.0%
AATAAAATCGGTCATGCTGG+CGG - chr8.3:75862914-75862933 MS.gene072304:intron 40.0%
ACCAAAGTTTCCTCCAAAAC+GGG - chr8.3:75863415-75863434 MS.gene072304:intron 40.0%
AGAATCAAGCCTAAAAGGTG+GGG - chr8.3:75863228-75863247 MS.gene072304:intron 40.0%
AGCCATTTCACGAAACGATT+AGG + chr8.3:75863529-75863548 None:intergenic 40.0%
AGGAATAGAGGTCAATGTCT+CGG + chr8.3:75862961-75862980 None:intergenic 40.0%
AGTGTGTTCAGCTTTACAAC+AGG - chr8.3:75863129-75863148 MS.gene072304:intron 40.0%
ATACATGTTTCGTCAGGTTC+CGG - chr8.3:75863256-75863275 MS.gene072304:intron 40.0%
CAAATGCTACATCTTCTGGA+GGG - chr8.3:75864019-75864038 MS.gene072304:CDS 40.0%
CACCAAAGTTTCCTCCAAAA+CGG - chr8.3:75863414-75863433 MS.gene072304:intron 40.0%
CATACACAATTCTATTCCGC+AGG + chr8.3:75862288-75862307 None:intergenic 40.0%
CTAGAATCAAGCCTAAAAGG+TGG - chr8.3:75863226-75863245 MS.gene072304:intron 40.0%
CTCCTAATCGTTTCGTGAAA+TGG - chr8.3:75863524-75863543 MS.gene072304:intron 40.0%
CTGCGGAATAGAATTGTGTA+TGG - chr8.3:75862286-75862305 MS.gene072304:CDS 40.0%
GTCACACATGCATGATTTCT+AGG - chr8.3:75863899-75863918 MS.gene072304:CDS 40.0%
GTGAAGATACATGTTTCGTC+AGG - chr8.3:75863250-75863269 MS.gene072304:intron 40.0%
GTGTGTTCAGCTTTACAACA+GGG - chr8.3:75863130-75863149 MS.gene072304:intron 40.0%
TCAGAAGGATTCAGTCCAAT+TGG - chr8.3:75863745-75863764 MS.gene072304:intron 40.0%
TCCACCTAAAAGTGGTGATA+TGG + chr8.3:75863854-75863873 None:intergenic 40.0%
TGCTCACATTGTGACCAAAA+CGG + chr8.3:75863679-75863698 None:intergenic 40.0%
TTGGACTGAATCCTTCTGAA+AGG + chr8.3:75863744-75863763 None:intergenic 40.0%
TTGTAAGCCTTTCCTGAACT+TGG + chr8.3:75863816-75863835 None:intergenic 40.0%
! AAAGCATCCTAACACAGCAA+TGG + chr8.3:75863956-75863975 None:intergenic 40.0%
! AGGATTCTTTTGTTGGGTCT+TGG - chr8.3:75861820-75861839 MS.gene072304:CDS 40.0%
! CACACATGCATGATTTCTAG+GGG - chr8.3:75863901-75863920 MS.gene072304:CDS 40.0%
! CTTTGGGAGAAGATTCAGTT+AGG - chr8.3:75863485-75863504 MS.gene072304:intron 40.0%
! GCTGTGAGGATTCTTTTGTT+GGG - chr8.3:75861814-75861833 MS.gene072304:CDS 40.0%
! TGAAGCAATGAACCTTTTCC+AGG - chr8.3:75862827-75862846 MS.gene072304:CDS 40.0%
! TGCTGTGAGGATTCTTTTGT+TGG - chr8.3:75861813-75861832 MS.gene072304:CDS 40.0%
!! ACCATATCACCACTTTTAGG+TGG - chr8.3:75863850-75863869 MS.gene072304:CDS 40.0%
!! GAACTTCCAAAGCATTGACA+GGG - chr8.3:75863552-75863571 MS.gene072304:intron 40.0%
!! TGAACTTCCAAAGCATTGAC+AGG - chr8.3:75863551-75863570 MS.gene072304:intron 40.0%
AACAGGGAATTCAACCAGCA+GGG - chr8.3:75863146-75863165 MS.gene072304:intron 45.0%
AAGAGCCAATGCTCAACACA+GGG + chr8.3:75862603-75862622 None:intergenic 45.0%
AATACTGCGGTGATCATTGC+CGG + chr8.3:75863451-75863470 None:intergenic 45.0%
ACAGCTACCATTGCTGTGTT+AGG - chr8.3:75863946-75863965 MS.gene072304:CDS 45.0%
CAAAACGGGACCTATCAATC+CGG - chr8.3:75863429-75863448 MS.gene072304:intron 45.0%
CAACAACTCTTTGGCCAGAA+GGG + chr8.3:75863036-75863055 None:intergenic 45.0%
CCAAAACGGCAAGTTCAACT+CGG + chr8.3:75863665-75863684 None:intergenic 45.0%
CTGCTATTGAAGATGCTGTG+AGG - chr8.3:75861800-75861819 MS.gene072304:CDS 45.0%
GCAAATGCTACATCTTCTGG+AGG - chr8.3:75864018-75864037 MS.gene072304:CDS 45.0%
GGAAACTTTGGTGGAAAGAG+TGG + chr8.3:75863407-75863426 None:intergenic 45.0%
GGGAGAAGATTCAGTTAGGA+AGG - chr8.3:75863489-75863508 MS.gene072304:intron 45.0%
GTGATCATTGCCGGATTGAT+AGG + chr8.3:75863442-75863461 None:intergenic 45.0%
GTGTAGTGAGGTTGAAGATG+AGG - chr8.3:75861768-75861787 MS.gene072304:CDS 45.0%
TAAGAGCCAATGCTCAACAC+AGG + chr8.3:75862604-75862623 None:intergenic 45.0%
TCAAGCTCCAAGTTCAGGAA+AGG - chr8.3:75863806-75863825 MS.gene072304:intron 45.0%
TCACATCCCTGTCAATGCTT+TGG + chr8.3:75863561-75863580 None:intergenic 45.0%
TGGTTTCAAGCTCCAAGTTC+AGG - chr8.3:75863801-75863820 MS.gene072304:intron 45.0%
TTGTACCCTGTGTTGAGCAT+TGG - chr8.3:75862595-75862614 MS.gene072304:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr8.3:75862237-75862256 None:intergenic 45.0%
! ATTGATAGGTCCCGTTTTGG+AGG + chr8.3:75863428-75863447 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr8.3:75862238-75862257 None:intergenic 45.0%
! GAGTTTGTTTGGGTGTAGTG+AGG - chr8.3:75861756-75861775 MS.gene072304:CDS 45.0%
! GTATCTTCACCCCACCTTTT+AGG + chr8.3:75863240-75863259 None:intergenic 45.0%
!! GGTGCTTTATTTCCTGAAGC+TGG - chr8.3:75862881-75862900 MS.gene072304:CDS 45.0%
!!! CGTTTTGGAGGAAACTTTGG+TGG + chr8.3:75863416-75863435 None:intergenic 45.0%
!!! TCCCGTTTTGGAGGAAACTT+TGG + chr8.3:75863419-75863438 None:intergenic 45.0%
AAGCTGAATGGCTCCATCTG+TGG - chr8.3:75863580-75863599 MS.gene072304:intron 50.0%
ACAGGGAATTCAACCAGCAG+GGG - chr8.3:75863147-75863166 MS.gene072304:intron 50.0%
ACGTGAACAACGCCGTGAAA+TGG + chr8.3:75863712-75863731 None:intergenic 50.0%
ACTAAGTGGGGTCAGCTACA+TGG + chr8.3:75862225-75862244 None:intergenic 50.0%
AGAGAGATGGACACCAGCAT+TGG + chr8.3:75863384-75863403 None:intergenic 50.0%
AGAGCCTTTGCAACACGATG+TGG + chr8.3:75861880-75861899 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG - chr8.3:75862224-75862243 MS.gene072304:CDS 50.0%
CAACAGGGAATTCAACCAGC+AGG - chr8.3:75863145-75863164 MS.gene072304:intron 50.0%
CAGTTAGGAAGGAGCTTGCA+GGG - chr8.3:75863500-75863519 MS.gene072304:intron 50.0%
CCAACAACTCTTTGGCCAGA+AGG + chr8.3:75863037-75863056 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr8.3:75862236-75862255 MS.gene072304:CDS 50.0%
CCTTCTGGCCAAAGAGTTGT+TGG - chr8.3:75863034-75863053 MS.gene072304:intron 50.0%
GACACCACATCGTGTTGCAA+AGG - chr8.3:75861873-75861892 MS.gene072304:CDS 50.0%
GACAGGGATGTGAAGCTGAA+TGG - chr8.3:75863568-75863587 MS.gene072304:intron 50.0%
GCTCTACGTGAAGGAACTAG+AGG - chr8.3:75861895-75861914 MS.gene072304:CDS 50.0%
GTGCATGGAGAGATGTTCTG+AGG - chr8.3:75862482-75862501 MS.gene072304:CDS 50.0%
GTGGAAAGAGTGGAGAGAGA+TGG + chr8.3:75863397-75863416 None:intergenic 50.0%
GTTGCAAAGGCTCTACGTGA+AGG - chr8.3:75861886-75861905 MS.gene072304:CDS 50.0%
TCAGTTAGGAAGGAGCTTGC+AGG - chr8.3:75863499-75863518 MS.gene072304:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG - chr8.3:75862231-75862250 MS.gene072304:CDS 50.0%
TGTAGCTGACCCCACTTAGT+GGG - chr8.3:75862225-75862244 MS.gene072304:CDS 50.0%
TTTCACGGCGTTGTTCACGT+AGG - chr8.3:75863712-75863731 MS.gene072304:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr8.3:75862239-75862258 None:intergenic 50.0%
! CGGATTGATAGGTCCCGTTT+TGG + chr8.3:75863431-75863450 None:intergenic 50.0%
!! AGGTTTTATCCCGCCACAGA+TGG + chr8.3:75863596-75863615 None:intergenic 50.0%
!! CCGAGTTGAACTTGCCGTTT+TGG - chr8.3:75863662-75863681 MS.gene072304:intron 50.0%
ACCTCGCCAGCAGCATTCAA+AGG + chr8.3:75863616-75863635 None:intergenic 55.0%
ACCTTTGAATGCTGCTGGCG+AGG - chr8.3:75863612-75863631 MS.gene072304:intron 55.0%
ACTTCAAGAGCCTCAGCGTC+TGG - chr8.3:75863099-75863118 MS.gene072304:intron 55.0%
CTGAATGGCTCCATCTGTGG+CGG - chr8.3:75863583-75863602 MS.gene072304:intron 55.0%
TGAATGGCTCCATCTGTGGC+GGG - chr8.3:75863584-75863603 MS.gene072304:intron 55.0%
TTTGAATGCTGCTGGCGAGG+TGG - chr8.3:75863615-75863634 MS.gene072304:intron 55.0%
! CATGTCGGTTACGTCCCTTC+TGG - chr8.3:75863019-75863038 MS.gene072304:intron 55.0%
!! GATGGACACCAGCATTGGTC+AGG + chr8.3:75863379-75863398 None:intergenic 55.0%
ACTTCGTCTGCCAGACGCTG+AGG + chr8.3:75863112-75863131 None:intergenic 60.0%
AGTACAACGGCAACCCCTGC+TGG + chr8.3:75863163-75863182 None:intergenic 60.0%
GGGGATTGCCTGACCAATGC+TGG - chr8.3:75863368-75863387 MS.gene072304:intron 60.0%
ATCGGTCATGCTGGCGGTGC+AGG - chr8.3:75862920-75862939 MS.gene072304:intron 65.0%
GGTCATGCTGGCGGTGCAGG+CGG - chr8.3:75862923-75862942 MS.gene072304:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 75861706 75864044 75861706 ID=MS.gene072304
chr8.3 mRNA 75861706 75864044 75861706 ID=MS.gene072304.t1;Parent=MS.gene072304
chr8.3 exon 75863834 75864044 75863834 ID=MS.gene072304.t1.exon1;Parent=MS.gene072304.t1
chr8.3 CDS 75863834 75864044 75863834 ID=cds.MS.gene072304.t1;Parent=MS.gene072304.t1
chr8.3 exon 75861706 75862901 75861706 ID=MS.gene072304.t1.exon2;Parent=MS.gene072304.t1
chr8.3 CDS 75861706 75862901 75861706 ID=cds.MS.gene072304.t1;Parent=MS.gene072304.t1
Gene Sequence

>MS.gene072304

ATGGGGTGTTTTGATGAGGTGTGTTACAATGGTGAGCTTGAAAATGGAGTGAGTTTGTTTGGGTGTAGTGAGGTTGAAGATGAGGCTAATAAAGCTGCTATTGAAGATGCTGTGAGGATTCTTTTGTTGGGTCTTGGTGAAGATATTAATAGGGAAGGTCTTAGGAAGACACCACATCGTGTTGCAAAGGCTCTACGTGAAGGAACTAGAGGTTGAACACTAATGATTTTTGTTTGGTCTTTTGAAGTTTGTAGTAAATATGATTTGATATATGAATCATTGTAGTTTTGTTGATGTTTCTCTTATGAGATATGTTTAGTTAACAACTTAGCATATTAGTTATTTGTTTAAAAATTTGGTATAAGATTTCTTTCAAGTAGTTGGATTGTAATGTTTTGAATTAAGCATTGATGTTTTTTTTTTTTAATGGGAGTTATACTTTGTCAACTTTATCTAGAGATTAATGAGTTGGACAGAAATATAGTATATGATTAGAACATTATGGTTTCGTTTGATCCATGTAGCTGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTATAGTTTTTCAACTTTCCTGCGGAATAGAATTGTGTATGGTTCAATATCTAAATTGGATAGGAAGTTGTTCATGTTAGTGGGATGTATATAGGTACTACTTATTAATCTTTTAACCATTTTAGGGAAGTTTGAATATTTTAAATTGAGATGAAAAATTTGATTGTAGTCAAGGAAATTCGTGTGATTTATTGGATAATCATAGTATGTGATTAGTGCATGGAGAGATGTTCTGAGGAAACTAGTCATTTGTTCTTCTTCTTTACGAAAATATTCGATCAACAGGGTAGTTCAATCTAATCAATGCTGTTGCTAGACGCATTTCTTTTTGTACCCTGTGTTGAGCATTGGCTCTTAATGTTAAGTGAGCAGTTCGATCGATGTATTTAAGTGAGAGATAAAGAGGAATGGTTTAGCATCCGATTTCTTTCTCTTGTTTCTGTTTCTTTGTTTTTTGCCTAACATATCAGCCCAATAATTATTATTCTCTTCCAATAATTTGCTCTCTTGTTTTGCGTGTTTGATTCACATAGTTTCTTGCATACTATTGTTGCTAATCTTGAAGCAATGAACCTTTTCCAGGTTATAGACAAAAGGTGAAGGACATTGTTGAAGGTGCTTTATTTCCTGAAGCTGGCATAGATAATAATAAAATCGGTCATGCTGGCGGTGCAGGCGGACTTGTGATTGTCCGAGACATTGACCTCTATTCCTACTGTGAATCTTGTTTGCTACCTTTCCAAGTCAAATGTCATGTCGGTTACGTCCCTTCTGGCCAAAGAGTTGTTGGATTAAGCAAGCTCTCTCGTGTCGCTGAAGTATTTGCTAAACGACTTCAAGAGCCTCAGCGTCTGGCAGACGAAGTGTGTTCAGCTTTACAACAGGGAATTCAACCAGCAGGGGTTGCCGTTGTACTTCAGTGTACACATATTCACTTTCCTGACATAGAAACAATCTTTCTAGAATCAAGCCTAAAAGGTGGGGTGAAGATACATGTTTCGTCAGGTTCCGGCGTCTTTGAAAACAAAAACGCAGACATATGGGCTGATTTCTTTTATCTTATTAAATCTAGAGGCATTGATATGGAAAATATTCATGCTCGGGGATTGCCTGACCAATGCTGGTGTCCATCTCTCTCCACTCTTTCCACCAAAGTTTCCTCCAAAACGGGACCTATCAATCCGGCAATGATCACCGCAGTATTTTCAATTCTAAAATCTTTGGGAGAAGATTCAGTTAGGAAGGAGCTTGCAGGGACTCCTAATCGTTTCGTGAAATGGCTGTTGAACTTCCAAAGCATTGACAGGGATGTGAAGCTGAATGGCTCCATCTGTGGCGGGATAAAACCTTTGAATGCTGCTGGCGAGGTGGTAAATAATGATAAACAAATATACACCGAGTTGAACTTGCCGTTTTGGTCACAATGTGAGCATCATATACTTCCATTTCACGGCGTTGTTCACGTAGGATATTTCCTTTCAGAAGGATTCAGTCCAATTGGAAAATCACTTTTACAGTCAATAGTGCATTTTTATGGTTTCAAGCTCCAAGTTCAGGAAAGGCTTACAAAGCAAATAGCAGAAACCATATCACCACTTTTAGGTGGAAATGTAATAGTAGTTGTAGAGGCAAGTCACACATGCATGATTTCTAGGGGAATTGAAAAGTTTGGAAGCAGTACAGCTACCATTGCTGTGTTAGGATGCTTTTCAACTGACATTGCTTCTAGGACCTTATTCTTGCAAAGTATTGCAAATGCTACATCTTCTGGAGGGTGA

Protein sequence

>MS.gene072304.t1

MGCFDEVCYNGELENGVSLFGCSEVEDEANKAAIEDAVRILLLGLGEDINREGLRKTPHRVAKALREGTRGYRQKVKDIVEGALFPEAGIDNNKIGHAGGAGGLVIVRDIDLYSYCESCLLPFQVKCHVGYVPSGQRVVGLSKLSRVAEVFAKRLQEPQRLADEVCSALQQGIQPAGVAVVLQCTHIHFPDIETIFLESSLKGGVKIHVSSGSGVFENKNADIWADFFYLIKSRGIDMENIHARGLPDQCWCPSLSTLSTKVSSKTGPINPAMITAVFSILKSLGEDSVRKELAGTPNRFVKWLLNFQSIDRDVKLNGSICGGIKPLNAAGEVVNNDKQIYTELNLPFWSQCEHHILPFHGVVHVGYFLSEGFSPIGKSLLQSIVHFYGFKLQVQERLTKQIAETISPLLGGNVIVVVEASHTCMISRGIEKFGSSTATIAVLGCFSTDIASRTLFLQSIANATSSGG