Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074091.t1 | XP_003618852.1 | 97.8 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 3.00E-141 | 511.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074091.t1 | Q5C9I9 | 56.0 | 248 | 109 | 0 | 12 | 259 | 6 | 253 | 9.2e-70 | 265.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074091.t1 | G7KNP7 | 97.8 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 2.2e-141 | 511.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene074091 | 0.803731 | 3.03E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene074091 | 0.858385 | 8.54E-63 | -1.69E-46 |
| MS.gene049915 | MS.gene074091 | 0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene050128 | MS.gene074091 | 0.847447 | 1.15E-59 | -1.69E-46 |
| MS.gene050623 | MS.gene074091 | -0.832836 | 7.53E-56 | -1.69E-46 |
| MS.gene050642 | MS.gene074091 | 0.819123 | 1.37E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene074091 | 0.825536 | 4.44E-54 | -1.69E-46 |
| MS.gene050763 | MS.gene074091 | 0.827989 | 1.15E-54 | -1.69E-46 |
| MS.gene051535 | MS.gene074091 | 0.828796 | 7.36E-55 | -1.69E-46 |
| MS.gene051662 | MS.gene074091 | 0.810749 | 9.88E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene074091 | 0.810199 | 1.30E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene074091 | 0.825393 | 4.80E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene074091 | 0.81204 | 5.18E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene074091 | 0.825852 | 3.74E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene074091 | 0.801523 | 8.65E-49 | -1.69E-46 |
| MS.gene053073 | MS.gene074091 | 0.85007 | 2.15E-60 | -1.69E-46 |
| MS.gene05316 | MS.gene074091 | 0.812639 | 3.83E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene074091 | 0.827301 | 1.69E-54 | -1.69E-46 |
| MS.gene053559 | MS.gene074091 | 0.810062 | 1.39E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene074091 | 0.829344 | 5.42E-55 | -1.69E-46 |
| MS.gene054379 | MS.gene074091 | 0.827171 | 1.81E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene074091 | 0.833846 | 4.22E-56 | -1.69E-46 |
| MS.gene055133 | MS.gene074091 | 0.828018 | 1.13E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene074091 | 0.817319 | 3.51E-52 | -1.69E-46 |
| MS.gene057754 | MS.gene074091 | 0.8283 | 9.71E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene074091 | 0.801435 | 9.02E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene074091 | 0.821023 | 5.03E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene074091 | 0.816693 | 4.85E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene074091 | 0.806972 | 6.35E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene074091 | 0.852573 | 4.22E-61 | -1.69E-46 |
| MS.gene059899 | MS.gene074091 | 0.843819 | 1.11E-58 | -1.69E-46 |
| MS.gene060084 | MS.gene074091 | 0.846005 | 2.85E-59 | -1.69E-46 |
| MS.gene060297 | MS.gene074091 | 0.810588 | 1.07E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene074091 | 0.811955 | 5.40E-51 | -1.69E-46 |
| MS.gene060940 | MS.gene074091 | 0.810586 | 1.07E-50 | -1.69E-46 |
| MS.gene060943 | MS.gene074091 | 0.821369 | 4.19E-53 | -1.69E-46 |
| MS.gene061002 | MS.gene074091 | 0.807045 | 6.12E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene074091 | 0.811971 | 5.36E-51 | -1.69E-46 |
| MS.gene061113 | MS.gene074091 | 0.814232 | 1.71E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074091.t1 | MTR_6g023910 | 97.778 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 0.0 | 536 |
| MS.gene074091.t1 | MTR_6g023610 | 82.900 | 269 | 46 | 0 | 1 | 269 | 1 | 269 | 1.68e-167 | 464 |
| MS.gene074091.t1 | MTR_6g023590 | 73.208 | 265 | 71 | 0 | 1 | 265 | 1 | 265 | 3.29e-144 | 405 |
| MS.gene074091.t1 | MTR_6g023990 | 72.556 | 266 | 72 | 1 | 1 | 265 | 1 | 266 | 7.68e-140 | 394 |
| MS.gene074091.t1 | MTR_6g023600 | 73.962 | 265 | 69 | 0 | 1 | 265 | 1 | 265 | 2.24e-139 | 393 |
| MS.gene074091.t1 | MTR_6g023950 | 73.180 | 261 | 70 | 0 | 1 | 261 | 1 | 261 | 3.58e-135 | 382 |
| MS.gene074091.t1 | MTR_6g023600 | 72.075 | 265 | 68 | 1 | 1 | 265 | 1 | 259 | 1.84e-132 | 375 |
| MS.gene074091.t1 | MTR_7g110130 | 50.593 | 253 | 124 | 1 | 9 | 261 | 2 | 253 | 7.59e-82 | 247 |
| MS.gene074091.t1 | MTR_2g090165 | 50.198 | 253 | 124 | 2 | 9 | 261 | 2 | 252 | 1.78e-81 | 246 |
| MS.gene074091.t1 | MTR_7g110140 | 47.826 | 253 | 130 | 2 | 9 | 261 | 2 | 252 | 2.22e-75 | 230 |
| MS.gene074091.t1 | MTR_7g105460 | 45.594 | 261 | 140 | 2 | 1 | 261 | 1 | 259 | 2.30e-74 | 228 |
| MS.gene074091.t1 | MTR_7g110160 | 46.640 | 253 | 115 | 2 | 9 | 261 | 2 | 234 | 2.24e-70 | 217 |
| MS.gene074091.t1 | MTR_4g052340 | 46.185 | 249 | 129 | 3 | 12 | 260 | 13 | 256 | 9.18e-70 | 216 |
| MS.gene074091.t1 | MTR_6g023940 | 57.944 | 214 | 28 | 3 | 1 | 214 | 1 | 152 | 3.11e-69 | 211 |
| MS.gene074091.t1 | MTR_4g052300 | 46.693 | 257 | 126 | 5 | 6 | 259 | 1 | 249 | 6.14e-69 | 214 |
| MS.gene074091.t1 | MTR_7g071680 | 46.154 | 273 | 119 | 8 | 9 | 259 | 25 | 291 | 3.38e-68 | 213 |
| MS.gene074091.t1 | MTR_4g052320 | 45.312 | 256 | 136 | 3 | 6 | 261 | 1 | 252 | 4.61e-68 | 212 |
| MS.gene074091.t1 | MTR_6g035395 | 48.000 | 250 | 115 | 3 | 12 | 261 | 4 | 238 | 1.13e-67 | 210 |
| MS.gene074091.t1 | MTR_4g052350 | 43.071 | 267 | 146 | 4 | 1 | 266 | 1 | 262 | 1.10e-65 | 206 |
| MS.gene074091.t1 | MTR_4g078630 | 42.481 | 266 | 142 | 3 | 12 | 270 | 18 | 279 | 2.82e-62 | 197 |
| MS.gene074091.t1 | MTR_7g107670 | 38.868 | 265 | 154 | 4 | 7 | 266 | 27 | 288 | 6.42e-58 | 187 |
| MS.gene074091.t1 | MTR_7g083870 | 40.698 | 258 | 140 | 6 | 12 | 261 | 34 | 286 | 1.87e-56 | 183 |
| MS.gene074091.t1 | MTR_7g105590 | 45.503 | 189 | 101 | 2 | 12 | 200 | 7 | 193 | 4.44e-53 | 171 |
| MS.gene074091.t1 | MTR_7g105580 | 39.200 | 250 | 132 | 3 | 12 | 261 | 7 | 236 | 4.66e-51 | 168 |
| MS.gene074091.t1 | MTR_4g084800 | 56.429 | 140 | 60 | 1 | 1 | 140 | 1 | 139 | 6.77e-51 | 164 |
| MS.gene074091.t1 | MTR_3g020670 | 38.722 | 266 | 154 | 4 | 3 | 261 | 6 | 269 | 6.15e-50 | 166 |
| MS.gene074091.t1 | MTR_3g113870 | 41.361 | 191 | 105 | 4 | 21 | 209 | 29 | 214 | 3.69e-45 | 152 |
| MS.gene074091.t1 | MTR_7g105570 | 34.137 | 249 | 111 | 2 | 13 | 261 | 21 | 216 | 1.10e-37 | 132 |
| MS.gene074091.t1 | MTR_7g113650 | 31.439 | 264 | 150 | 10 | 12 | 259 | 39 | 287 | 1.44e-27 | 108 |
| MS.gene074091.t1 | MTR_1g082760 | 33.080 | 263 | 153 | 9 | 9 | 259 | 36 | 287 | 2.05e-27 | 107 |
| MS.gene074091.t1 | MTR_7g094510 | 31.274 | 259 | 168 | 5 | 9 | 262 | 2 | 255 | 1.39e-26 | 104 |
| MS.gene074091.t1 | MTR_4g132850 | 31.474 | 251 | 159 | 6 | 12 | 259 | 6 | 246 | 1.61e-26 | 104 |
| MS.gene074091.t1 | MTR_3g085740 | 29.368 | 269 | 170 | 9 | 1 | 262 | 64 | 319 | 2.08e-26 | 105 |
| MS.gene074091.t1 | MTR_7g094520 | 31.783 | 258 | 166 | 6 | 10 | 262 | 8 | 260 | 2.21e-25 | 101 |
| MS.gene074091.t1 | MTR_4g131740 | 26.592 | 267 | 168 | 8 | 8 | 259 | 35 | 288 | 9.95e-22 | 92.4 |
| MS.gene074091.t1 | MTR_4g064887 | 30.370 | 270 | 164 | 8 | 1 | 259 | 1 | 257 | 3.20e-20 | 87.8 |
| MS.gene074091.t1 | MTR_7g105560 | 64.179 | 67 | 23 | 1 | 1 | 67 | 1 | 66 | 5.68e-20 | 84.3 |
| MS.gene074091.t1 | MTR_4g058810 | 27.600 | 250 | 164 | 7 | 13 | 252 | 11 | 253 | 1.45e-19 | 85.9 |
| MS.gene074091.t1 | MTR_1196s0010 | 31.102 | 254 | 152 | 9 | 16 | 262 | 277 | 514 | 5.14e-19 | 86.7 |
| MS.gene074091.t1 | MTR_1g068955 | 29.297 | 256 | 170 | 5 | 10 | 259 | 11 | 261 | 5.37e-19 | 84.7 |
| MS.gene074091.t1 | MTR_4g058840 | 27.200 | 250 | 165 | 7 | 13 | 252 | 11 | 253 | 1.37e-18 | 83.6 |
| MS.gene074091.t1 | MTR_4g058820 | 27.200 | 250 | 165 | 7 | 13 | 252 | 11 | 253 | 1.37e-18 | 83.6 |
| MS.gene074091.t1 | MTR_1g051165 | 26.437 | 261 | 172 | 7 | 12 | 258 | 13 | 267 | 2.74e-18 | 82.8 |
| MS.gene074091.t1 | MTR_7g063320 | 29.478 | 268 | 179 | 7 | 1 | 262 | 1 | 264 | 4.69e-18 | 81.6 |
| MS.gene074091.t1 | MTR_7g063270 | 28.030 | 264 | 177 | 8 | 4 | 261 | 7 | 263 | 5.51e-18 | 81.6 |
| MS.gene074091.t1 | MTR_3g068085 | 29.963 | 267 | 169 | 9 | 2 | 261 | 4 | 259 | 9.44e-18 | 80.9 |
| MS.gene074091.t1 | MTR_3g068070 | 28.889 | 270 | 166 | 11 | 3 | 261 | 5 | 259 | 2.52e-17 | 79.7 |
| MS.gene074091.t1 | MTR_7g063260 | 27.757 | 263 | 180 | 7 | 4 | 261 | 7 | 264 | 2.65e-17 | 79.7 |
| MS.gene074091.t1 | MTR_7g063390 | 27.778 | 270 | 180 | 8 | 1 | 261 | 1 | 264 | 1.31e-16 | 77.8 |
| MS.gene074091.t1 | MTR_4g064887 | 30.516 | 213 | 139 | 6 | 1 | 208 | 1 | 209 | 2.45e-16 | 76.3 |
| MS.gene074091.t1 | MTR_3g068175 | 27.341 | 267 | 162 | 8 | 9 | 259 | 13 | 263 | 8.26e-16 | 75.9 |
| MS.gene074091.t1 | MTR_3g068175 | 27.376 | 263 | 163 | 7 | 9 | 259 | 13 | 259 | 8.43e-16 | 75.5 |
| MS.gene074091.t1 | MTR_3g068065 | 28.740 | 254 | 167 | 8 | 13 | 261 | 17 | 261 | 1.17e-15 | 75.1 |
| MS.gene074091.t1 | MTR_7g063360 | 29.044 | 272 | 174 | 10 | 1 | 261 | 1 | 264 | 1.58e-15 | 74.7 |
| MS.gene074091.t1 | MTR_7g063330 | 25.769 | 260 | 186 | 5 | 5 | 261 | 7 | 262 | 1.82e-15 | 74.7 |
| MS.gene074091.t1 | MTR_4g086400 | 29.384 | 211 | 125 | 5 | 14 | 207 | 5 | 208 | 5.65e-15 | 74.7 |
| MS.gene074091.t1 | MTR_4g086410 | 29.858 | 211 | 124 | 5 | 14 | 207 | 5 | 208 | 1.70e-14 | 73.6 |
| MS.gene074091.t1 | MTR_3g068155 | 28.352 | 261 | 155 | 9 | 13 | 259 | 19 | 261 | 4.05e-14 | 70.9 |
| MS.gene074091.t1 | MTR_8g096580 | 27.805 | 205 | 138 | 5 | 16 | 217 | 48 | 245 | 9.10e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074091.t1 | AT2G47140 | 49.012 | 253 | 127 | 2 | 9 | 261 | 2 | 252 | 1.17e-79 | 241 |
| MS.gene074091.t1 | AT2G47130 | 48.638 | 257 | 121 | 5 | 9 | 261 | 2 | 251 | 4.56e-74 | 227 |
| MS.gene074091.t1 | AT3G29260 | 48.249 | 257 | 122 | 5 | 9 | 261 | 2 | 251 | 1.72e-72 | 223 |
| MS.gene074091.t1 | AT2G47120 | 47.036 | 253 | 130 | 4 | 9 | 261 | 2 | 250 | 3.81e-72 | 222 |
| MS.gene074091.t1 | AT3G29250 | 47.656 | 256 | 126 | 5 | 9 | 261 | 2 | 252 | 1.38e-71 | 221 |
| MS.gene074091.t1 | AT3G29250 | 47.674 | 258 | 127 | 5 | 7 | 261 | 36 | 288 | 1.51e-71 | 222 |
| MS.gene074091.t1 | AT2G47120 | 46.800 | 250 | 129 | 4 | 12 | 261 | 6 | 251 | 6.28e-71 | 219 |
| MS.gene074091.t1 | AT3G29250 | 47.308 | 260 | 127 | 6 | 7 | 261 | 36 | 290 | 1.86e-69 | 216 |
| MS.gene074091.t1 | AT3G51680 | 42.599 | 277 | 137 | 5 | 1 | 259 | 20 | 292 | 4.53e-64 | 203 |
| MS.gene074091.t1 | AT3G26760 | 41.045 | 268 | 147 | 6 | 7 | 266 | 30 | 294 | 6.30e-60 | 192 |
| MS.gene074091.t1 | AT3G26770 | 39.844 | 256 | 145 | 5 | 10 | 259 | 38 | 290 | 1.22e-56 | 184 |
| MS.gene074091.t1 | AT1G52340 | 41.923 | 260 | 139 | 5 | 12 | 261 | 17 | 274 | 3.14e-55 | 179 |
| MS.gene074091.t1 | AT4G03140 | 40.000 | 255 | 145 | 4 | 12 | 261 | 77 | 328 | 1.19e-54 | 180 |
| MS.gene074091.t1 | AT3G42960 | 41.241 | 274 | 147 | 7 | 6 | 270 | 1 | 269 | 6.99e-52 | 171 |
| MS.gene074091.t1 | AT1G54870 | 31.716 | 268 | 160 | 9 | 4 | 259 | 75 | 331 | 1.52e-27 | 108 |
| MS.gene074091.t1 | AT1G54870 | 31.716 | 268 | 160 | 9 | 4 | 259 | 73 | 329 | 1.61e-27 | 108 |
| MS.gene074091.t1 | AT5G18210 | 32.075 | 265 | 153 | 7 | 13 | 262 | 8 | 260 | 2.32e-27 | 106 |
| MS.gene074091.t1 | AT3G03980 | 30.627 | 271 | 171 | 5 | 4 | 262 | 5 | 270 | 4.53e-26 | 103 |
| MS.gene074091.t1 | AT4G13180 | 30.000 | 270 | 173 | 7 | 1 | 262 | 1 | 262 | 1.57e-25 | 102 |
| MS.gene074091.t1 | AT3G04000 | 30.292 | 274 | 173 | 5 | 2 | 262 | 3 | 271 | 1.69e-25 | 102 |
| MS.gene074091.t1 | AT3G05260 | 29.478 | 268 | 171 | 8 | 4 | 262 | 28 | 286 | 2.11e-25 | 102 |
| MS.gene074091.t1 | AT5G18210 | 32.520 | 246 | 143 | 6 | 13 | 245 | 8 | 243 | 6.81e-24 | 97.8 |
| MS.gene074091.t1 | AT4G05530 | 31.325 | 249 | 162 | 6 | 12 | 259 | 8 | 248 | 3.75e-22 | 92.8 |
| MS.gene074091.t1 | AT1G24360 | 26.772 | 254 | 169 | 7 | 12 | 259 | 73 | 315 | 4.55e-21 | 90.9 |
| MS.gene074091.t1 | AT5G06060 | 29.259 | 270 | 157 | 9 | 7 | 261 | 3 | 253 | 2.46e-19 | 85.5 |
| MS.gene074091.t1 | AT3G46170 | 25.940 | 266 | 173 | 8 | 13 | 264 | 26 | 281 | 1.87e-17 | 80.5 |
| MS.gene074091.t1 | AT2G29340 | 29.167 | 264 | 149 | 9 | 13 | 259 | 7 | 249 | 2.39e-17 | 79.7 |
| MS.gene074091.t1 | AT3G55290 | 26.692 | 266 | 171 | 9 | 13 | 264 | 17 | 272 | 3.34e-17 | 79.7 |
| MS.gene074091.t1 | AT2G29340 | 29.167 | 264 | 149 | 9 | 13 | 259 | 7 | 249 | 3.36e-17 | 80.1 |
| MS.gene074091.t1 | AT3G55290 | 26.692 | 266 | 171 | 9 | 13 | 264 | 18 | 273 | 3.70e-17 | 79.7 |
| MS.gene074091.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 17 | 273 | 7.26e-17 | 79.0 |
| MS.gene074091.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 19 | 275 | 7.90e-17 | 78.6 |
| MS.gene074091.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 15 | 271 | 8.13e-17 | 78.6 |
| MS.gene074091.t1 | AT1G63380 | 26.437 | 261 | 179 | 7 | 13 | 264 | 22 | 278 | 9.89e-17 | 78.6 |
| MS.gene074091.t1 | AT2G29310 | 29.699 | 266 | 149 | 11 | 13 | 261 | 7 | 251 | 1.81e-16 | 77.4 |
| MS.gene074091.t1 | AT2G29360 | 28.947 | 266 | 169 | 7 | 7 | 261 | 4 | 260 | 3.26e-16 | 76.6 |
| MS.gene074091.t1 | AT2G29150 | 30.037 | 273 | 154 | 11 | 3 | 259 | 6 | 257 | 3.56e-16 | 76.6 |
| MS.gene074091.t1 | AT1G07450 | 30.888 | 259 | 154 | 12 | 13 | 261 | 8 | 251 | 8.76e-16 | 75.5 |
| MS.gene074091.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 15 | 271 | 1.25e-15 | 75.5 |
| MS.gene074091.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 14 | 270 | 1.28e-15 | 75.1 |
| MS.gene074091.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 13 | 269 | 1.37e-15 | 75.1 |
| MS.gene074091.t1 | AT5G50600 | 26.733 | 202 | 142 | 4 | 13 | 212 | 45 | 242 | 1.46e-15 | 75.9 |
| MS.gene074091.t1 | AT5G50700 | 26.733 | 202 | 142 | 4 | 13 | 212 | 45 | 242 | 1.46e-15 | 75.9 |
| MS.gene074091.t1 | AT1G62610 | 25.670 | 261 | 181 | 7 | 13 | 264 | 19 | 275 | 1.52e-15 | 75.1 |
| MS.gene074091.t1 | AT5G50770 | 30.481 | 187 | 122 | 5 | 13 | 196 | 45 | 226 | 1.75e-15 | 75.5 |
| MS.gene074091.t1 | AT2G30670 | 26.295 | 251 | 173 | 7 | 13 | 259 | 7 | 249 | 3.14e-15 | 73.9 |
| MS.gene074091.t1 | AT3G55310 | 26.568 | 271 | 165 | 11 | 13 | 264 | 17 | 272 | 4.04e-15 | 73.9 |
| MS.gene074091.t1 | AT2G29340 | 29.858 | 211 | 119 | 7 | 13 | 209 | 7 | 202 | 5.58e-15 | 72.0 |
| MS.gene074091.t1 | AT2G29340 | 29.858 | 211 | 119 | 7 | 13 | 209 | 7 | 202 | 5.58e-15 | 72.0 |
| MS.gene074091.t1 | AT5G50690 | 29.670 | 182 | 113 | 5 | 10 | 184 | 42 | 215 | 8.91e-15 | 72.4 |
| MS.gene074091.t1 | AT5G50590 | 29.670 | 182 | 113 | 5 | 10 | 184 | 42 | 215 | 8.91e-15 | 72.4 |
| MS.gene074091.t1 | AT2G29330 | 28.287 | 251 | 168 | 8 | 13 | 259 | 7 | 249 | 1.23e-14 | 72.4 |
| MS.gene074091.t1 | AT5G50690 | 29.834 | 181 | 114 | 5 | 10 | 184 | 42 | 215 | 1.75e-14 | 72.4 |
| MS.gene074091.t1 | AT5G50590 | 29.834 | 181 | 114 | 5 | 10 | 184 | 42 | 215 | 1.75e-14 | 72.4 |
| MS.gene074091.t1 | AT3G47360 | 27.273 | 198 | 130 | 7 | 13 | 204 | 45 | 234 | 3.01e-14 | 71.6 |
| MS.gene074091.t1 | AT3G47350 | 24.873 | 197 | 136 | 5 | 13 | 204 | 44 | 233 | 3.71e-14 | 71.6 |
| MS.gene074091.t1 | AT3G47350 | 24.873 | 197 | 136 | 5 | 13 | 204 | 44 | 233 | 4.19e-14 | 71.2 |
| MS.gene074091.t1 | AT2G29370 | 28.309 | 272 | 165 | 9 | 3 | 261 | 6 | 260 | 7.07e-14 | 70.1 |
| MS.gene074091.t1 | AT1G49670 | 30.049 | 203 | 118 | 6 | 18 | 203 | 9 | 204 | 9.54e-14 | 71.2 |
| MS.gene074091.t1 | AT2G29260 | 28.571 | 252 | 166 | 8 | 13 | 259 | 68 | 310 | 1.08e-13 | 70.5 |
| MS.gene074091.t1 | AT1G49670 | 30.049 | 203 | 118 | 6 | 18 | 203 | 9 | 204 | 1.13e-13 | 71.2 |
| MS.gene074091.t1 | AT2G29310 | 30.000 | 210 | 118 | 8 | 13 | 208 | 7 | 201 | 1.35e-12 | 65.5 |
| MS.gene074091.t1 | AT2G29320 | 27.799 | 259 | 160 | 10 | 13 | 259 | 13 | 256 | 3.59e-12 | 65.5 |
| MS.gene074091.t1 | AT1G07440 | 27.273 | 253 | 167 | 8 | 13 | 259 | 12 | 253 | 5.29e-12 | 64.7 |
| MS.gene074091.t1 | AT3G47350 | 31.132 | 106 | 67 | 2 | 13 | 116 | 44 | 145 | 5.50e-12 | 64.7 |
| MS.gene074091.t1 | AT2G29350 | 29.612 | 206 | 126 | 7 | 8 | 204 | 10 | 205 | 7.57e-12 | 63.9 |
| MS.gene074091.t1 | AT2G29310 | 28.788 | 198 | 124 | 8 | 70 | 261 | 63 | 249 | 4.67e-11 | 62.0 |
Find 62 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCGAAGCACGCGATAAT+AGG | 0.212241 | 6.1:-7099860 | MS.gene074091:CDS |
| AACTTGCAAAGCATGGAATA+AGG | 0.289760 | 6.1:-7099814 | MS.gene074091:CDS |
| GGCAGATGCTGTGTTGTTCT+TGG | 0.317529 | 6.1:-7099657 | MS.gene074091:CDS |
| CACCATACGTGCACCTTGTT+CGG | 0.329714 | 6.1:+7100503 | None:intergenic |
| CAATCAACGGTCAATACTTA+TGG | 0.333742 | 6.1:-7100363 | MS.gene074091:CDS |
| CGTCTCTTTGCCGATGCCGC+TGG | 0.343665 | 6.1:+7100539 | None:intergenic |
| CACTCACTAACAGCAGTCTT+AGG | 0.352793 | 6.1:-7100596 | MS.gene074091:CDS |
| GATATTATGTTTAGCAATGC+TGG | 0.362324 | 6.1:-7100085 | MS.gene074091:CDS |
| CTTCATTGCCCAACTCATCT+TGG | 0.372263 | 6.1:+7100466 | None:intergenic |
| GCCGATGCCGCTGGCACCTC+CGG | 0.378274 | 6.1:+7100548 | None:intergenic |
| AATGAAGTGGCTGCATCTAT+TGG | 0.402249 | 6.1:-7100450 | MS.gene074091:CDS |
| TGTCGAAGCACGCGATAATA+GGG | 0.426974 | 6.1:-7099859 | MS.gene074091:CDS |
| AGTGACAAAGTCAGATTCAT+TGG | 0.438975 | 6.1:+7099631 | None:intergenic |
| ACCGGAGGTGCCAGCGGCAT+CGG | 0.446928 | 6.1:-7100549 | MS.gene074091:CDS |
| GAACGTTAACTGAGAACAAA+TGG | 0.454425 | 6.1:+7100008 | None:intergenic |
| TTGTTCTCAGTTAACGTTCG+AGG | 0.458461 | 6.1:-7100004 | MS.gene074091:CDS |
| GTGAATTGTGTCTCACCAAA+TGG | 0.465319 | 6.1:-7099791 | MS.gene074091:CDS |
| GTGGATGGTAGCTTTCTTGA+TGG | 0.469944 | 6.1:-7099593 | MS.gene074091:CDS |
| CTGCATCTATTGGCAGCCAC+AGG | 0.470696 | 6.1:-7100440 | MS.gene074091:CDS |
| GTGTGCACGGCTAGCGTCGC+CGG | 0.471191 | 6.1:-7099917 | MS.gene074091:CDS |
| CGCCGACATCCAAGATGAGT+TGG | 0.475014 | 6.1:-7100475 | MS.gene074091:CDS |
| CTCAGTTAACGTTCGAGGAA+TGG | 0.475650 | 6.1:-7099999 | MS.gene074091:CDS |
| GGAGAATACAAGAGGTTGGA+AGG | 0.477377 | 6.1:-7099704 | MS.gene074091:CDS |
| ACTTGCAAAGCATGGAATAA+GGG | 0.486045 | 6.1:-7099813 | MS.gene074091:CDS |
| AACAGCAGTCTTAGGTTAGC+AGG | 0.489763 | 6.1:-7100588 | MS.gene074091:CDS |
| TCTAGCAATTTCATAGTCAA+TGG | 0.495865 | 6.1:+7099758 | None:intergenic |
| GGCCTTGATCTTCGTGTGGA+TGG | 0.499300 | 6.1:-7099608 | MS.gene074091:CDS |
| GAAACATGCGGCGCGTGCGA+TGG | 0.507406 | 6.1:-7099966 | MS.gene074091:CDS |
| AATGGTGTTGCTAATCCATT+TGG | 0.510778 | 6.1:+7099776 | None:intergenic |
| ATATTATGTTTAGCAATGCT+GGG | 0.517928 | 6.1:-7100084 | MS.gene074091:CDS |
| TCCAACACAGTCTGATCAGA+TGG | 0.518322 | 6.1:+7100052 | None:intergenic |
| GGCAAAATAGCCATTGTCAC+CGG | 0.521032 | 6.1:-7100567 | MS.gene074091:CDS |
| ATGGTGGACGGTTGCGTGAG+GGG | 0.522782 | 6.1:-7099947 | MS.gene074091:CDS |
| AACGGTCAATACTTATGGAC+AGG | 0.523815 | 6.1:-7100358 | MS.gene074091:intron |
| GAGGGGTAGCATTGTGTGCA+CGG | 0.524508 | 6.1:-7099930 | MS.gene074091:CDS |
| TGCCGAACAAGGTGCACGTA+TGG | 0.526292 | 6.1:-7100505 | MS.gene074091:CDS |
| AATGAATCTGACTTTGTCAC+TGG | 0.530339 | 6.1:-7099629 | MS.gene074091:CDS |
| GCGCATGTCTTTGCCGAACA+AGG | 0.531534 | 6.1:-7100516 | MS.gene074091:CDS |
| AGTAAGCAACTTGCAAAGCA+TGG | 0.531560 | 6.1:-7099821 | MS.gene074091:CDS |
| GCCGACATCCAAGATGAGTT+GGG | 0.536561 | 6.1:-7100474 | MS.gene074091:CDS |
| CTTCATGCTACCGTTGCTAC+CGG | 0.541833 | 6.1:+7099898 | None:intergenic |
| GCTGGCACCTCCGGTGACAA+TGG | 0.548752 | 6.1:+7100557 | None:intergenic |
| GATGGTGGACGGTTGCGTGA+GGG | 0.557625 | 6.1:-7099948 | MS.gene074091:CDS |
| TACCATCCACACGAAGATCA+AGG | 0.559297 | 6.1:+7099606 | None:intergenic |
| CACTGGCCTTGATCTTCGTG+TGG | 0.560496 | 6.1:-7099612 | MS.gene074091:CDS |
| ACATGCGGCGCGTGCGATGG+TGG | 0.561353 | 6.1:-7099963 | MS.gene074091:CDS |
| ATACAAGAGGTTGGAAGGAG+TGG | 0.561860 | 6.1:-7099699 | MS.gene074091:CDS |
| CGATGGTGGACGGTTGCGTG+AGG | 0.569245 | 6.1:-7099949 | MS.gene074091:CDS |
| CGAACAAGGTGCACGTATGG+TGG | 0.575204 | 6.1:-7100502 | MS.gene074091:CDS |
| GCCCAACTCATCTTGGATGT+CGG | 0.577520 | 6.1:+7100473 | None:intergenic |
| TCCATCTGATCAGACTGTGT+TGG | 0.587052 | 6.1:-7100053 | MS.gene074091:CDS |
| ACTATGAAATTGCTAGATGC+AGG | 0.589183 | 6.1:-7099752 | MS.gene074091:CDS |
| ATTGTCACCGGAGGTGCCAG+CGG | 0.592750 | 6.1:-7100555 | MS.gene074091:CDS |
| GCGGCGCGTGCGATGGTGGA+CGG | 0.599914 | 6.1:-7099959 | MS.gene074091:CDS |
| GCTAGCGTCGCCGGTAGCAA+CGG | 0.610358 | 6.1:-7099908 | MS.gene074091:CDS |
| CGCTACGTCACAATGAACAT+AGG | 0.625490 | 6.1:+7100413 | None:intergenic |
| CAGCGGCATCGGCAAAGAGA+CGG | 0.625686 | 6.1:-7100538 | MS.gene074091:CDS |
| AGATGAGTTGGGCAATGAAG+TGG | 0.652574 | 6.1:-7100463 | MS.gene074091:CDS |
| GGCATTGTGCGTGAAACATG+CGG | 0.656257 | 6.1:-7099978 | MS.gene074091:CDS |
| GGTTCTCAGCACTAAACATG+TGG | 0.675466 | 6.1:-7099678 | MS.gene074091:CDS |
| AAAATAGCCATTGTCACCGG+AGG | 0.684966 | 6.1:-7100564 | MS.gene074091:CDS |
| AATGAACATAGGTGCACCTG+TGG | 0.691741 | 6.1:+7100424 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAACATATTATCTATCTT+TGG | + | chr6.1:7100027-7100046 | None:intergenic | 20.0% |
| ! | ATATTATGTTTAGCAATGCT+GGG | - | chr6.1:7100096-7100115 | MS.gene074091:intron | 25.0% |
| ! | TTGTTTAGACAAATGATTCA+TGG | - | chr6.1:7099954-7099973 | MS.gene074091:CDS | 25.0% |
| !!! | ACTTATTTTTTTTCCACAAC+AGG | - | chr6.1:7100070-7100089 | MS.gene074091:CDS | 25.0% |
| AACATAATATCTACCTGTTG+TGG | + | chr6.1:7100086-7100105 | None:intergenic | 30.0% | |
| CAAAAATCTCGTTCAATCAA+CGG | - | chr6.1:7099804-7099823 | MS.gene074091:CDS | 30.0% | |
| GATATTATGTTTAGCAATGC+TGG | - | chr6.1:7100095-7100114 | MS.gene074091:intron | 30.0% | |
| GGACAGGTAAATAATAACTA+AGG | - | chr6.1:7099838-7099857 | MS.gene074091:CDS | 30.0% | |
| TCTAGCAATTTCATAGTCAA+TGG | + | chr6.1:7100425-7100444 | None:intergenic | 30.0% | |
| !! | TGATTTTTGGAGAATACAAG+AGG | - | chr6.1:7100468-7100487 | MS.gene074091:CDS | 30.0% |
| !!! | GAGACAGTTGATTTGATTTT+TGG | - | chr6.1:7100455-7100474 | MS.gene074091:CDS | 30.0% |
| AACTTGCAAAGCATGGAATA+AGG | - | chr6.1:7100366-7100385 | MS.gene074091:CDS | 35.0% | |
| AATGAATCTGACTTTGTCAC+TGG | - | chr6.1:7100551-7100570 | MS.gene074091:CDS | 35.0% | |
| ACTATGAAATTGCTAGATGC+AGG | - | chr6.1:7100428-7100447 | MS.gene074091:CDS | 35.0% | |
| ACTTGCAAAGCATGGAATAA+GGG | - | chr6.1:7100367-7100386 | MS.gene074091:CDS | 35.0% | |
| AGTGACAAAGTCAGATTCAT+TGG | + | chr6.1:7100552-7100571 | None:intergenic | 35.0% | |
| CAATCAACGGTCAATACTTA+TGG | - | chr6.1:7099817-7099836 | MS.gene074091:CDS | 35.0% | |
| GAACGTTAACTGAGAACAAA+TGG | + | chr6.1:7100175-7100194 | None:intergenic | 35.0% | |
| !! | AATGGTGTTGCTAATCCATT+TGG | + | chr6.1:7100407-7100426 | None:intergenic | 35.0% |
| !! | TTTTGGAGAATACAAGAGGT+TGG | - | chr6.1:7100472-7100491 | MS.gene074091:CDS | 35.0% |
| AACGGTCAATACTTATGGAC+AGG | - | chr6.1:7099822-7099841 | MS.gene074091:CDS | 40.0% | |
| AATGAAGTGGCTGCATCTAT+TGG | - | chr6.1:7099730-7099749 | MS.gene074091:CDS | 40.0% | |
| AGTAAGCAACTTGCAAAGCA+TGG | - | chr6.1:7100359-7100378 | MS.gene074091:CDS | 40.0% | |
| GTGAATTGTGTCTCACCAAA+TGG | - | chr6.1:7100389-7100408 | MS.gene074091:CDS | 40.0% | |
| TTGTTCTCAGTTAACGTTCG+AGG | - | chr6.1:7100176-7100195 | MS.gene074091:intron | 40.0% | |
| AAAATAGCCATTGTCACCGG+AGG | - | chr6.1:7099616-7099635 | MS.gene074091:CDS | 45.0% | |
| AACAGCAGTCTTAGGTTAGC+AGG | - | chr6.1:7099592-7099611 | MS.gene074091:CDS | 45.0% | |
| AATGAACATAGGTGCACCTG+TGG | + | chr6.1:7099759-7099778 | None:intergenic | 45.0% | |
| ATACAAGAGGTTGGAAGGAG+TGG | - | chr6.1:7100481-7100500 | MS.gene074091:CDS | 45.0% | |
| ATGTCGAAGCACGCGATAAT+AGG | - | chr6.1:7100320-7100339 | MS.gene074091:intron | 45.0% | |
| CACTCACTAACAGCAGTCTT+AGG | - | chr6.1:7099584-7099603 | MS.gene074091:CDS | 45.0% | |
| CGCTACGTCACAATGAACAT+AGG | + | chr6.1:7099770-7099789 | None:intergenic | 45.0% | |
| CTCAGTTAACGTTCGAGGAA+TGG | - | chr6.1:7100181-7100200 | MS.gene074091:intron | 45.0% | |
| CTTCATTGCCCAACTCATCT+TGG | + | chr6.1:7099717-7099736 | None:intergenic | 45.0% | |
| GGAGAATACAAGAGGTTGGA+AGG | - | chr6.1:7100476-7100495 | MS.gene074091:CDS | 45.0% | |
| GGCAAAATAGCCATTGTCAC+CGG | - | chr6.1:7099613-7099632 | MS.gene074091:CDS | 45.0% | |
| GGTTCTCAGCACTAAACATG+TGG | - | chr6.1:7100502-7100521 | MS.gene074091:CDS | 45.0% | |
| GTGGATGGTAGCTTTCTTGA+TGG | - | chr6.1:7100587-7100606 | MS.gene074091:CDS | 45.0% | |
| TACCATCCACACGAAGATCA+AGG | + | chr6.1:7100577-7100596 | None:intergenic | 45.0% | |
| TCCAACACAGTCTGATCAGA+TGG | + | chr6.1:7100131-7100150 | None:intergenic | 45.0% | |
| TCCATCTGATCAGACTGTGT+TGG | - | chr6.1:7100127-7100146 | MS.gene074091:intron | 45.0% | |
| TGTCGAAGCACGCGATAATA+GGG | - | chr6.1:7100321-7100340 | MS.gene074091:intron | 45.0% | |
| ! | AGATGAGTTGGGCAATGAAG+TGG | - | chr6.1:7099717-7099736 | MS.gene074091:CDS | 45.0% |
| CACCATACGTGCACCTTGTT+CGG | + | chr6.1:7099680-7099699 | None:intergenic | 50.0% | |
| CTTCATGCTACCGTTGCTAC+CGG | + | chr6.1:7100285-7100304 | None:intergenic | 50.0% | |
| GCCCAACTCATCTTGGATGT+CGG | + | chr6.1:7099710-7099729 | None:intergenic | 50.0% | |
| GCCGACATCCAAGATGAGTT+GGG | - | chr6.1:7099706-7099725 | MS.gene074091:CDS | 50.0% | |
| GGCATTGTGCGTGAAACATG+CGG | - | chr6.1:7100202-7100221 | MS.gene074091:intron | 50.0% | |
| ! | GGCAGATGCTGTGTTGTTCT+TGG | - | chr6.1:7100523-7100542 | MS.gene074091:CDS | 50.0% |
| CGAACAAGGTGCACGTATGG+TGG | - | chr6.1:7099678-7099697 | MS.gene074091:CDS | 55.0% | |
| CGCCGACATCCAAGATGAGT+TGG | - | chr6.1:7099705-7099724 | MS.gene074091:CDS | 55.0% | |
| CTGCATCTATTGGCAGCCAC+AGG | - | chr6.1:7099740-7099759 | MS.gene074091:CDS | 55.0% | |
| GAGGGGTAGCATTGTGTGCA+CGG | - | chr6.1:7100250-7100269 | MS.gene074091:intron | 55.0% | |
| GCGCATGTCTTTGCCGAACA+AGG | - | chr6.1:7099664-7099683 | MS.gene074091:CDS | 55.0% | |
| GGCCTTGATCTTCGTGTGGA+TGG | - | chr6.1:7100572-7100591 | MS.gene074091:CDS | 55.0% | |
| TGCCGAACAAGGTGCACGTA+TGG | - | chr6.1:7099675-7099694 | MS.gene074091:CDS | 55.0% | |
| !! | CACTGGCCTTGATCTTCGTG+TGG | - | chr6.1:7100568-7100587 | MS.gene074091:CDS | 55.0% |
| !! | ATGGTGGACGGTTGCGTGAG+GGG | - | chr6.1:7100233-7100252 | MS.gene074091:intron | 60.0% |
| !! | ATTGTCACCGGAGGTGCCAG+CGG | - | chr6.1:7099625-7099644 | MS.gene074091:CDS | 60.0% |
| !! | CAGCGGCATCGGCAAAGAGA+CGG | - | chr6.1:7099642-7099661 | MS.gene074091:CDS | 60.0% |
| !! | GATGGTGGACGGTTGCGTGA+GGG | - | chr6.1:7100232-7100251 | MS.gene074091:intron | 60.0% |
| CGTCTCTTTGCCGATGCCGC+TGG | + | chr6.1:7099644-7099663 | None:intergenic | 65.0% | |
| GAAACATGCGGCGCGTGCGA+TGG | - | chr6.1:7100214-7100233 | MS.gene074091:intron | 65.0% | |
| GCTAGCGTCGCCGGTAGCAA+CGG | - | chr6.1:7100272-7100291 | MS.gene074091:intron | 65.0% | |
| GCTGGCACCTCCGGTGACAA+TGG | + | chr6.1:7099626-7099645 | None:intergenic | 65.0% | |
| !! | CGATGGTGGACGGTTGCGTG+AGG | - | chr6.1:7100231-7100250 | MS.gene074091:intron | 65.0% |
| ACATGCGGCGCGTGCGATGG+TGG | - | chr6.1:7100217-7100236 | MS.gene074091:intron | 70.0% | |
| GTGTGCACGGCTAGCGTCGC+CGG | - | chr6.1:7100263-7100282 | MS.gene074091:intron | 70.0% | |
| !! | ACCGGAGGTGCCAGCGGCAT+CGG | - | chr6.1:7099631-7099650 | MS.gene074091:CDS | 70.0% |
| GCCGATGCCGCTGGCACCTC+CGG | + | chr6.1:7099635-7099654 | None:intergenic | 75.0% | |
| !! | GCGGCGCGTGCGATGGTGGA+CGG | - | chr6.1:7100221-7100240 | MS.gene074091:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 7099571 | 7100631 | 7099571 | ID=MS.gene074091 |
| chr6.1 | mRNA | 7099571 | 7100631 | 7099571 | ID=MS.gene074091.t1;Parent=MS.gene074091 |
| chr6.1 | exon | 7100359 | 7100631 | 7100359 | ID=MS.gene074091.t1.exon1;Parent=MS.gene074091.t1 |
| chr6.1 | CDS | 7100359 | 7100631 | 7100359 | ID=cds.MS.gene074091.t1;Parent=MS.gene074091.t1 |
| chr6.1 | exon | 7099571 | 7100110 | 7099571 | ID=MS.gene074091.t1.exon2;Parent=MS.gene074091.t1 |
| chr6.1 | CDS | 7099571 | 7100110 | 7099571 | ID=cds.MS.gene074091.t1;Parent=MS.gene074091.t1 |
| Gene Sequence |
| Protein sequence |
