Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074515.t1 | XP_013451323.1 | 97.8 | 272 | 6 | 0 | 1 | 272 | 4 | 275 | 2.30E-160 | 574.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074515.t1 | Q9ZT29 | 70.7 | 270 | 79 | 0 | 3 | 272 | 2 | 271 | 2.0e-120 | 433.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074515.t1 | A0A072U8F0 | 97.8 | 272 | 6 | 0 | 1 | 272 | 4 | 275 | 1.6e-160 | 574.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene074515 | 0.800227 | 1.59E-48 | -1.69E-46 |
| MS.gene049298 | MS.gene074515 | 0.874794 | 5.11E-68 | -1.69E-46 |
| MS.gene050338 | MS.gene074515 | 0.83032 | 3.14E-55 | -1.69E-46 |
| MS.gene050444 | MS.gene074515 | -0.812416 | 4.29E-51 | -1.69E-46 |
| MS.gene050707 | MS.gene074515 | 0.841316 | 5.12E-58 | -1.69E-46 |
| MS.gene050710 | MS.gene074515 | 0.828998 | 6.58E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene074515 | -0.804467 | 2.13E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene074515 | -0.806799 | 6.90E-50 | -1.69E-46 |
| MS.gene050874 | MS.gene074515 | 0.812954 | 3.27E-51 | -1.69E-46 |
| MS.gene050875 | MS.gene074515 | 0.863156 | 3.04E-64 | -1.69E-46 |
| MS.gene051439 | MS.gene074515 | 0.817328 | 3.49E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene074515 | -0.835099 | 2.04E-56 | -1.69E-46 |
| MS.gene051914 | MS.gene074515 | 0.887262 | 1.67E-72 | -1.69E-46 |
| MS.gene052129 | MS.gene074515 | 0.800755 | 1.24E-48 | -1.69E-46 |
| MS.gene052209 | MS.gene074515 | 0.830176 | 3.40E-55 | -1.69E-46 |
| MS.gene052308 | MS.gene074515 | 0.870154 | 1.81E-66 | -1.69E-46 |
| MS.gene053108 | MS.gene074515 | 0.831138 | 1.98E-55 | -1.69E-46 |
| MS.gene053173 | MS.gene074515 | 0.843834 | 1.10E-58 | -1.69E-46 |
| MS.gene053348 | MS.gene074515 | 0.804348 | 2.26E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene074515 | -0.801777 | 7.67E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene074515 | 0.855832 | 4.84E-62 | -1.69E-46 |
| MS.gene054593 | MS.gene074515 | 0.854478 | 1.20E-61 | -1.69E-46 |
| MS.gene054633 | MS.gene074515 | 0.851489 | 8.58E-61 | -1.69E-46 |
| MS.gene054662 | MS.gene074515 | 0.85356 | 2.20E-61 | -1.69E-46 |
| MS.gene054850 | MS.gene074515 | 0.842409 | 2.63E-58 | -1.69E-46 |
| MS.gene054941 | MS.gene074515 | 0.885299 | 9.16E-72 | -1.69E-46 |
| MS.gene055308 | MS.gene074515 | 0.853928 | 1.73E-61 | -1.69E-46 |
| MS.gene055578 | MS.gene074515 | 0.824038 | 1.00E-53 | -1.69E-46 |
| MS.gene056041 | MS.gene074515 | 0.813121 | 3.00E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene074515 | -0.855027 | 8.31E-62 | -1.69E-46 |
| MS.gene05640 | MS.gene074515 | 0.863021 | 3.35E-64 | -1.69E-46 |
| MS.gene056528 | MS.gene074515 | 0.801692 | 7.99E-49 | -1.69E-46 |
| MS.gene05652 | MS.gene074515 | 0.880836 | 3.95E-70 | -1.69E-46 |
| MS.gene056618 | MS.gene074515 | 0.848214 | 7.07E-60 | -1.69E-46 |
| MS.gene056688 | MS.gene074515 | 0.8063 | 8.80E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene074515 | 0.805686 | 1.18E-49 | -1.69E-46 |
| MS.gene057101 | MS.gene074515 | 0.832804 | 7.67E-56 | -1.69E-46 |
| MS.gene057367 | MS.gene074515 | 0.857302 | 1.79E-62 | -1.69E-46 |
| MS.gene057458 | MS.gene074515 | 0.804711 | 1.89E-49 | -1.69E-46 |
| MS.gene057669 | MS.gene074515 | 0.854097 | 1.54E-61 | -1.69E-46 |
| MS.gene057717 | MS.gene074515 | 0.835514 | 1.61E-56 | -1.69E-46 |
| MS.gene058128 | MS.gene074515 | 0.89459 | 2.14E-75 | -1.69E-46 |
| MS.gene058418 | MS.gene074515 | 0.804363 | 2.24E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene074515 | 0.901523 | 2.46E-78 | -1.69E-46 |
| MS.gene05926 | MS.gene074515 | 0.869518 | 2.92E-66 | -1.69E-46 |
| MS.gene059553 | MS.gene074515 | 0.801098 | 1.06E-48 | -1.69E-46 |
| MS.gene05960 | MS.gene074515 | 0.810605 | 1.06E-50 | -1.69E-46 |
| MS.gene059616 | MS.gene074515 | 0.868092 | 8.44E-66 | -1.69E-46 |
| MS.gene059699 | MS.gene074515 | 0.831116 | 2.00E-55 | -1.69E-46 |
| MS.gene059703 | MS.gene074515 | 0.826359 | 2.83E-54 | -1.69E-46 |
| MS.gene059905 | MS.gene074515 | 0.823567 | 1.29E-53 | -1.69E-46 |
| MS.gene06000 | MS.gene074515 | -0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene074515 | 0.85702 | 2.17E-62 | -1.69E-46 |
| MS.gene061099 | MS.gene074515 | 0.810588 | 1.07E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074515.t1 | MTR_6g018820 | 97.794 | 272 | 6 | 0 | 1 | 272 | 4 | 275 | 0.0 | 552 |
| MS.gene074515.t1 | MTR_6g018860 | 78.909 | 275 | 55 | 1 | 1 | 272 | 4 | 278 | 1.53e-165 | 459 |
| MS.gene074515.t1 | MTR_6g018900 | 89.947 | 189 | 19 | 0 | 82 | 270 | 1 | 189 | 2.51e-126 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074515.t1 | AT3G02580 | 70.111 | 271 | 79 | 1 | 2 | 270 | 4 | 274 | 3.89e-144 | 405 |
| MS.gene074515.t1 | AT3G02590 | 66.914 | 269 | 87 | 1 | 4 | 270 | 7 | 275 | 2.09e-136 | 386 |
| MS.gene074515.t1 | AT3G02590 | 70.681 | 191 | 54 | 1 | 82 | 270 | 1 | 191 | 5.04e-99 | 288 |
Find 65 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTACTTTACTTCATTTC+TGG | 0.069797 | 6.1:+4852432 | MS.gene074515:CDS |
| ACTTCATTTCTGGTTTCTTT+TGG | 0.223397 | 6.1:+4852442 | MS.gene074515:CDS |
| CGGAAAATTATGGCCTGTTA+TGG | 0.256109 | 6.1:+4855447 | MS.gene074515:CDS |
| TTGTGGAGTTTGGTATTTAT+TGG | 0.257333 | 6.1:+4854048 | MS.gene074515:CDS |
| ATTGCATTCACGGAAAATTA+TGG | 0.261663 | 6.1:+4855437 | MS.gene074515:CDS |
| CGGTTATTTAGCGATGTATA+TGG | 0.295041 | 6.1:+4854022 | MS.gene074515:CDS |
| TGTGGAGTTTGGTATTTATT+GGG | 0.301537 | 6.1:+4854049 | MS.gene074515:CDS |
| AACCGATATTTGTAAGAATA+TGG | 0.304421 | 6.1:-4853883 | None:intergenic |
| GCACCAAGTGTGCAATAAAA+TGG | 0.308135 | 6.1:-4855375 | None:intergenic |
| ACGACATATCGACATAACTA+TGG | 0.318548 | 6.1:+4855496 | MS.gene074515:CDS |
| TCTTATTCATTGAAGGTGTT+TGG | 0.327394 | 6.1:+4855398 | MS.gene074515:CDS |
| TATATGGTTATTGTGGAGTT+TGG | 0.347055 | 6.1:+4854038 | MS.gene074515:CDS |
| TCCGAGTACTTGACAGAAAT+CGG | 0.355089 | 6.1:+4853948 | MS.gene074515:CDS |
| AGCCATATTCTTACAAATAT+CGG | 0.357919 | 6.1:+4853881 | MS.gene074515:CDS |
| AATACTCTCTCCCCGTTTGC+TGG | 0.366450 | 6.1:+4854146 | MS.gene074515:CDS |
| AATATTCATGATTGCATTCA+CGG | 0.374123 | 6.1:+4855427 | MS.gene074515:CDS |
| CAACCAACATTATTTAATCT+AGG | 0.377005 | 6.1:-4853987 | None:intergenic |
| TGTAGTTACGAAGCCATGTT+TGG | 0.394197 | 6.1:-4852401 | None:intergenic |
| CACTTTGCCTACGTCTTGCT+CGG | 0.395239 | 6.1:-4855566 | None:intergenic |
| TGGTAACCAGCTCCCATAAC+AGG | 0.414380 | 6.1:-4855460 | None:intergenic |
| GTATGGATGGATTGGATGTT+CGG | 0.440878 | 6.1:+4855529 | MS.gene074515:CDS |
| GGAAAATTATGGCCTGTTAT+GGG | 0.443452 | 6.1:+4855448 | MS.gene074515:CDS |
| TTGGTGCTCTTATTCATTGA+AGG | 0.445284 | 6.1:+4855391 | MS.gene074515:CDS |
| TGATGAACTCACCAGCAAAC+GGG | 0.453022 | 6.1:-4854157 | None:intergenic |
| TTATGGCCTGTTATGGGAGC+TGG | 0.456299 | 6.1:+4855454 | MS.gene074515:CDS |
| CGCAATGTTTATCTCCCTAA+AGG | 0.464782 | 6.1:+4852489 | MS.gene074515:CDS |
| TTTCCAACAGTAAATGTAGA+AGG | 0.467553 | 6.1:-4852466 | None:intergenic |
| CTAGATTAAATAATGTTGGT+TGG | 0.478213 | 6.1:+4853988 | MS.gene074515:CDS |
| TTGATGAACTCACCAGCAAA+CGG | 0.488354 | 6.1:-4854158 | None:intergenic |
| AGCGATGTATATGGTTATTG+TGG | 0.500046 | 6.1:+4854031 | MS.gene074515:CDS |
| TTTCCTAGATTAAATAATGT+TGG | 0.500472 | 6.1:+4853984 | MS.gene074515:CDS |
| TCAAGCATTACCACATAGCC+TGG | 0.508235 | 6.1:+4855333 | MS.gene074515:CDS |
| GCATGAAGATATTTGTAAAG+TGG | 0.510724 | 6.1:-4854098 | None:intergenic |
| GGTCCTTCTACATTTACTGT+TGG | 0.512202 | 6.1:+4852463 | MS.gene074515:CDS |
| TTGCTTTGAAAGCCATGCAT+TGG | 0.517901 | 6.1:+4853904 | MS.gene074515:CDS |
| CATCGCTAAATAACCGATGT+AGG | 0.521223 | 6.1:-4854015 | None:intergenic |
| ACTTTGCCTACGTCTTGCTC+GGG | 0.523211 | 6.1:-4855565 | None:intergenic |
| AATGCAATCATGAATATTTG+CGG | 0.526336 | 6.1:-4855422 | None:intergenic |
| GTTTGGAAGAACCTTGGAAG+TGG | 0.528851 | 6.1:-4852384 | None:intergenic |
| AGCCATGTTTGGAAGAACCT+TGG | 0.540963 | 6.1:-4852390 | None:intergenic |
| TTCCAAGGTTCTTCCAAACA+TGG | 0.547286 | 6.1:+4852388 | MS.gene074515:CDS |
| CGACATATCGACATAACTAT+GGG | 0.549179 | 6.1:+4855497 | MS.gene074515:CDS |
| ATTACACCGTATGGATGGAT+TGG | 0.549465 | 6.1:+4855521 | MS.gene074515:CDS |
| ACTATGGGCATTACACCGTA+TGG | 0.549982 | 6.1:+4855512 | MS.gene074515:CDS |
| GTCAAGTACTCGGAAAGAGT+TGG | 0.550740 | 6.1:-4853939 | None:intergenic |
| GCCGATTTCTGTCAAGTACT+CGG | 0.552304 | 6.1:-4853949 | None:intergenic |
| AGTACTTGACAGAAATCGGC+TGG | 0.557300 | 6.1:+4853952 | MS.gene074515:CDS |
| TGGCTTCGTAACTACATTGG+TGG | 0.561043 | 6.1:+4852408 | MS.gene074515:CDS |
| TGTCTTCAATGAAGAGAGTA+CGG | 0.567028 | 6.1:-4852305 | None:intergenic |
| TGGGCATTACACCGTATGGA+TGG | 0.573336 | 6.1:+4855516 | MS.gene074515:CDS |
| AAGTGTGCAATAAAATGGAC+TGG | 0.574144 | 6.1:-4855370 | None:intergenic |
| CTGGAACAATAAACAAAGCC+AGG | 0.574481 | 6.1:-4855351 | None:intergenic |
| TAAGAATATGGCTCTACGTG+AGG | 0.584180 | 6.1:-4853871 | None:intergenic |
| GCTTGAAGTATTCCATCAAG+AGG | 0.592313 | 6.1:-4855316 | None:intergenic |
| ATAAACAAAGCCAGGCTATG+TGG | 0.593129 | 6.1:-4855343 | None:intergenic |
| TTTGGAAGAACCTTGGAAGT+GGG | 0.595848 | 6.1:-4852383 | None:intergenic |
| ACATGGCTTCGTAACTACAT+TGG | 0.599600 | 6.1:+4852405 | MS.gene074515:CDS |
| TCGATATGTCGTATGATGAA+TGG | 0.602742 | 6.1:-4855485 | None:intergenic |
| AAGAATATGGCTCTACGTGA+GGG | 0.616607 | 6.1:-4853870 | None:intergenic |
| GTTGGTTGGATTGCCTACAT+CGG | 0.630807 | 6.1:+4854002 | MS.gene074515:CDS |
| AAGCAAAGTGTACCAATGCA+TGG | 0.633953 | 6.1:-4853916 | None:intergenic |
| GAACATCCAATCCATCCATA+CGG | 0.634908 | 6.1:-4855527 | None:intergenic |
| ATGTCGTATGATGAATGGTA+TGG | 0.646301 | 6.1:-4855480 | None:intergenic |
| GATGAACTCACCAGCAAACG+GGG | 0.648868 | 6.1:-4854156 | None:intergenic |
| CGCGATCCCGAGCAAGACGT+AGG | 0.681471 | 6.1:+4855559 | MS.gene074515:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTTTTAATATTTTT+TGG | + | chr6.1:4853179-4853198 | MS.gene074515:intron | 0.0% |
| !! | CTCAAAAAAAAAAAAAAAAA+GGG | - | chr6.1:4852520-4852539 | None:intergenic | 10.0% |
| !!! | TAGATTTAAAGTTAAATAAA+TGG | + | chr6.1:4854819-4854838 | MS.gene074515:intron | 10.0% |
| !!! | TTTTTGTTTTAATTTCAAAT+AGG | + | chr6.1:4852553-4852572 | MS.gene074515:intron | 10.0% |
| !!! | TTTTTTTTAAATATTTACAC+AGG | + | chr6.1:4853118-4853137 | MS.gene074515:intron | 10.0% |
| !! | AAAATACTAAATACTTATAC+AGG | + | chr6.1:4853052-4853071 | MS.gene074515:intron | 15.0% |
| !! | AAATACTAAATACTTATACA+GGG | + | chr6.1:4853053-4853072 | MS.gene074515:intron | 15.0% |
| !! | GCTCAAAAAAAAAAAAAAAA+AGG | - | chr6.1:4852521-4852540 | None:intergenic | 15.0% |
| !! | TAACTTTAAATCTAACTTAA+GGG | - | chr6.1:4854813-4854832 | None:intergenic | 15.0% |
| !! | TTAACTTTAAATCTAACTTA+AGG | - | chr6.1:4854814-4854833 | None:intergenic | 15.0% |
| !!! | ATTTTTGATTTGATATGAAA+TGG | + | chr6.1:4852905-4852924 | MS.gene074515:intron | 15.0% |
| !!! | CATTTTTTTCAAATTATCAT+CGG | - | chr6.1:4852763-4852782 | None:intergenic | 15.0% |
| !!! | TAGGTTTTCTTTTTAATATT+TGG | + | chr6.1:4852572-4852591 | MS.gene074515:intron | 15.0% |
| !! | AACAATTAACATCTAACAAT+TGG | - | chr6.1:4853609-4853628 | None:intergenic | 20.0% |
| !! | AATAATGCATGAAGATAAAA+TGG | - | chr6.1:4853252-4853271 | None:intergenic | 20.0% |
| !! | ATAAAATGGTCATTTCAAAA+GGG | - | chr6.1:4853238-4853257 | None:intergenic | 20.0% |
| !! | ATTGTTAGATGTTAATTGTT+TGG | + | chr6.1:4853609-4853628 | MS.gene074515:intron | 20.0% |
| !! | TTTCAAATTATTAGCTATGT+CGG | + | chr6.1:4853507-4853526 | MS.gene074515:intron | 20.0% |
| !! | TTTCCTAGATTAAATAATGT+TGG | + | chr6.1:4853984-4854003 | MS.gene074515:CDS | 20.0% |
| !!! | TGATTAAAGAAAAAAGTACA+CGG | + | chr6.1:4854695-4854714 | MS.gene074515:intron | 20.0% |
| !!! | TGTGAAAGTTTTAATCTTTT+GGG | + | chr6.1:4852613-4852632 | MS.gene074515:intron | 20.0% |
| !!! | TTGTTTTATCATTTTGCTTT+TGG | + | chr6.1:4852972-4852991 | MS.gene074515:intron | 20.0% |
| !!! | TTTTGGGTTTAATTTGAAAT+GGG | + | chr6.1:4852629-4852648 | MS.gene074515:intron | 20.0% |
| !!! | TTTTTTTGTTGATAAATCTC+AGG | + | chr6.1:4855280-4855299 | MS.gene074515:intron | 20.0% |
| ! | AAATGGTCTATCTTTCAATA+TGG | + | chr6.1:4854836-4854855 | MS.gene074515:intron | 25.0% |
| ! | AACCGATATTTGTAAGAATA+TGG | - | chr6.1:4853886-4853905 | None:intergenic | 25.0% |
| ! | AATATTCATGATTGCATTCA+CGG | + | chr6.1:4855427-4855446 | MS.gene074515:CDS | 25.0% |
| ! | AATGCAATCATGAATATTTG+CGG | - | chr6.1:4855425-4855444 | None:intergenic | 25.0% |
| ! | ACAAACAAATAACATACACA+AGG | - | chr6.1:4853748-4853767 | None:intergenic | 25.0% |
| ! | AGATTATTGTTGTGATTTAG+AGG | - | chr6.1:4854344-4854363 | None:intergenic | 25.0% |
| ! | AGCCATATTCTTACAAATAT+CGG | + | chr6.1:4853881-4853900 | MS.gene074515:CDS | 25.0% |
| ! | ATCTTGTAAAGTTCAAAGAT+GGG | - | chr6.1:4853293-4853312 | None:intergenic | 25.0% |
| ! | CAACCAACATTATTTAATCT+AGG | - | chr6.1:4853990-4854009 | None:intergenic | 25.0% |
| ! | CAACCATTGAAAATTATAAG+TGG | - | chr6.1:4853086-4853105 | None:intergenic | 25.0% |
| ! | CAAGAAAACAATGTTACAAA+AGG | - | chr6.1:4853818-4853837 | None:intergenic | 25.0% |
| ! | CTAGATTAAATAATGTTGGT+TGG | + | chr6.1:4853988-4854007 | MS.gene074515:CDS | 25.0% |
| ! | GATAAAATGGTCATTTCAAA+AGG | - | chr6.1:4853239-4853258 | None:intergenic | 25.0% |
| ! | GTTCATAACCATAAATTCAT+CGG | + | chr6.1:4854366-4854385 | MS.gene074515:intron | 25.0% |
| ! | TTAAAAAACCAAACCAGATA+TGG | - | chr6.1:4855218-4855237 | None:intergenic | 25.0% |
| ! | TTATTTGTTTGTCATTGTCT+CGG | + | chr6.1:4853756-4853775 | MS.gene074515:intron | 25.0% |
| !! | AAGCCACTTATAATTTTCAA+TGG | + | chr6.1:4853080-4853099 | MS.gene074515:intron | 25.0% |
| !!! | CTTTTGGGTTTAATTTGAAA+TGG | + | chr6.1:4852628-4852647 | MS.gene074515:intron | 25.0% |
| !!! | GTGTGAAAGTTTTAATCTTT+TGG | + | chr6.1:4852612-4852631 | MS.gene074515:intron | 25.0% |
| !!! | TGTTTTAATCACAAGATCAA+GGG | + | chr6.1:4855243-4855262 | MS.gene074515:intron | 25.0% |
| !!! | TTCGGTTTTTAAAACATTGA+AGG | - | chr6.1:4855070-4855089 | None:intergenic | 25.0% |
| !!! | TTGTTTTAATCACAAGATCA+AGG | + | chr6.1:4855242-4855261 | MS.gene074515:intron | 25.0% |
| ACTCAATAACAGAATCATCA+AGG | - | chr6.1:4854280-4854299 | None:intergenic | 30.0% | |
| ATCATCAAGGATTATCCAAA+CGG | - | chr6.1:4854267-4854286 | None:intergenic | 30.0% | |
| ATCCAAAACACTTTACATTC+TGG | + | chr6.1:4853719-4853738 | MS.gene074515:intron | 30.0% | |
| ATTAGTACATAAGTTCAAGG+AGG | + | chr6.1:4854735-4854754 | MS.gene074515:intron | 30.0% | |
| ATTGCATTCACGGAAAATTA+TGG | + | chr6.1:4855437-4855456 | MS.gene074515:CDS | 30.0% | |
| CATCTTGTAAAGTTCAAAGA+TGG | - | chr6.1:4853294-4853313 | None:intergenic | 30.0% | |
| CTTCTACTTTACTTCATTTC+TGG | + | chr6.1:4852432-4852451 | MS.gene074515:CDS | 30.0% | |
| GCATGAAGATATTTGTAAAG+TGG | - | chr6.1:4854101-4854120 | None:intergenic | 30.0% | |
| GTAAGAAACAGAGAAATGAA+GGG | + | chr6.1:4854421-4854440 | MS.gene074515:intron | 30.0% | |
| GTGAAATCAAACATGAACTA+AGG | - | chr6.1:4853685-4853704 | None:intergenic | 30.0% | |
| GTGATTAGTACATAAGTTCA+AGG | + | chr6.1:4854732-4854751 | MS.gene074515:intron | 30.0% | |
| TAATTGTTTGGTTACACGTT+GGG | + | chr6.1:4853621-4853640 | MS.gene074515:intron | 30.0% | |
| TATATATCAGCATGATCAGT+TGG | - | chr6.1:4853165-4853184 | None:intergenic | 30.0% | |
| TATATGGTTATTGTGGAGTT+TGG | + | chr6.1:4854038-4854057 | MS.gene074515:CDS | 30.0% | |
| TCCATGATATATGATTCAGA+AGG | - | chr6.1:4854589-4854608 | None:intergenic | 30.0% | |
| TCCTTCTGAATCATATATCA+TGG | + | chr6.1:4854585-4854604 | MS.gene074515:intron | 30.0% | |
| TGAACATCTAACAATCTGAT+TGG | - | chr6.1:4853350-4853369 | None:intergenic | 30.0% | |
| TGTGGAGTTTGGTATTTATT+GGG | + | chr6.1:4854049-4854068 | MS.gene074515:CDS | 30.0% | |
| TTAATTGTTTGGTTACACGT+TGG | + | chr6.1:4853620-4853639 | MS.gene074515:intron | 30.0% | |
| TTAGTACATAAGTTCAAGGA+GGG | + | chr6.1:4854736-4854755 | MS.gene074515:intron | 30.0% | |
| TTGTGGAGTTTGGTATTTAT+TGG | + | chr6.1:4854048-4854067 | MS.gene074515:CDS | 30.0% | |
| TTTCCAACAGTAAATGTAGA+AGG | - | chr6.1:4852469-4852488 | None:intergenic | 30.0% | |
| ! | TTCTACAACAGCATTTTGTT+GGG | + | chr6.1:4852333-4852352 | MS.gene074515:CDS | 30.0% |
| ! | TTGTGAAAGATGTCATCTTT+TGG | + | chr6.1:4853004-4853023 | MS.gene074515:intron | 30.0% |
| ! | TTGTTGATAAATCTCAGGTT+TGG | + | chr6.1:4855285-4855304 | MS.gene074515:intron | 30.0% |
| ! | TTTCTACAACAGCATTTTGT+TGG | + | chr6.1:4852332-4852351 | MS.gene074515:CDS | 30.0% |
| !! | GACTTATGTTTTTCTAGCAA+TGG | + | chr6.1:4853319-4853338 | MS.gene074515:intron | 30.0% |
| !! | TACCAGAATGTAAAGTGTTT+TGG | - | chr6.1:4853724-4853743 | None:intergenic | 30.0% |
| !! | TCTTATTCATTGAAGGTGTT+TGG | + | chr6.1:4855398-4855417 | MS.gene074515:CDS | 30.0% |
| !!! | ACTTCATTTCTGGTTTCTTT+TGG | + | chr6.1:4852442-4852461 | MS.gene074515:CDS | 30.0% |
| !!! | TTTGTTACCTCACTTTTTGT+GGG | + | chr6.1:4852359-4852378 | MS.gene074515:CDS | 30.0% |
| AAAACGCAATGTACATCTCA+GGG | + | chr6.1:4853644-4853663 | MS.gene074515:intron | 35.0% | |
| AACATGAACTAAGGCGATTT+CGG | - | chr6.1:4853676-4853695 | None:intergenic | 35.0% | |
| AAGTGTGCAATAAAATGGAC+TGG | - | chr6.1:4855373-4855392 | None:intergenic | 35.0% | |
| ACACCAAAGTTAGTGATTCT+AGG | + | chr6.1:4854621-4854640 | MS.gene074515:intron | 35.0% | |
| ACGACATATCGACATAACTA+TGG | + | chr6.1:4855496-4855515 | MS.gene074515:CDS | 35.0% | |
| AGCAGACTGAGATAAATCAA+TGG | - | chr6.1:4854954-4854973 | None:intergenic | 35.0% | |
| AGCGATGTATATGGTTATTG+TGG | + | chr6.1:4854031-4854050 | MS.gene074515:CDS | 35.0% | |
| ATGAAACACAGATACAGACA+CGG | - | chr6.1:4853562-4853581 | None:intergenic | 35.0% | |
| ATGTCGTATGATGAATGGTA+TGG | - | chr6.1:4855483-4855502 | None:intergenic | 35.0% | |
| CGACATATCGACATAACTAT+GGG | + | chr6.1:4855497-4855516 | MS.gene074515:CDS | 35.0% | |
| CGGTTATTTAGCGATGTATA+TGG | + | chr6.1:4854022-4854041 | MS.gene074515:CDS | 35.0% | |
| CGTAAGAAACAGAGAAATGA+AGG | + | chr6.1:4854420-4854439 | MS.gene074515:intron | 35.0% | |
| GGAAAATTATGGCCTGTTAT+GGG | + | chr6.1:4855448-4855467 | MS.gene074515:CDS | 35.0% | |
| GGTTCACAACATTAGTGAAA+CGG | + | chr6.1:4854387-4854406 | MS.gene074515:intron | 35.0% | |
| GTCTGAGAGATATTTAGTCT+TGG | + | chr6.1:4852825-4852844 | MS.gene074515:intron | 35.0% | |
| GTTGTGAACCGATGAATTTA+TGG | - | chr6.1:4854377-4854396 | None:intergenic | 35.0% | |
| TATGTACTAATCACCTACGT+AGG | - | chr6.1:4854726-4854745 | None:intergenic | 35.0% | |
| TATGTTGTCGTGTCATACTA+AGG | + | chr6.1:4854984-4855003 | MS.gene074515:intron | 35.0% | |
| TCATCAAGGATTATCCAAAC+GGG | - | chr6.1:4854266-4854285 | None:intergenic | 35.0% | |
| TCGATATGTCGTATGATGAA+TGG | - | chr6.1:4855488-4855507 | None:intergenic | 35.0% | |
| TGTCTTCAATGAAGAGAGTA+CGG | - | chr6.1:4852308-4852327 | None:intergenic | 35.0% | |
| TTTAATCACAAGATCAAGGG+CGG | + | chr6.1:4855246-4855265 | MS.gene074515:intron | 35.0% | |
| ! | AGTCCATTTTATTGCACACT+TGG | + | chr6.1:4855372-4855391 | MS.gene074515:CDS | 35.0% |
| ! | ATTTCTCTGTTTCTTACGTG+TGG | - | chr6.1:4854418-4854437 | None:intergenic | 35.0% |
| ! | TTGGTGCTCTTATTCATTGA+AGG | + | chr6.1:4855391-4855410 | MS.gene074515:CDS | 35.0% |
| !! | AAAAAAAGGGTGTCACCTTT+AGG | - | chr6.1:4852507-4852526 | None:intergenic | 35.0% |
| !! | AAAAAAGGGTGTCACCTTTA+GGG | - | chr6.1:4852506-4852525 | None:intergenic | 35.0% |
| !! | TGTATTGATTTGAGAGTCCT+AGG | + | chr6.1:4853385-4853404 | MS.gene074515:intron | 35.0% |
| !!! | AAAGTAGTTTTGAGCAGTGT+TGG | - | chr6.1:4854546-4854565 | None:intergenic | 35.0% |
| !!! | CTTTGTTACCTCACTTTTTG+TGG | + | chr6.1:4852358-4852377 | MS.gene074515:CDS | 35.0% |
| !!! | TGTTTTAAAAACCGAACTCG+CGG | + | chr6.1:4855074-4855093 | MS.gene074515:intron | 35.0% |
| AAACGCAATGTACATCTCAG+GGG | + | chr6.1:4853645-4853664 | MS.gene074515:intron | 40.0% | |
| AACCAAACCAGATATGGAAC+TGG | - | chr6.1:4855212-4855231 | None:intergenic | 40.0% | |
| AAGCAAAGTGTACCAATGCA+TGG | - | chr6.1:4853919-4853938 | None:intergenic | 40.0% | |
| ACACCAACAATTCTGATCGA+AGG | - | chr6.1:4852807-4852826 | None:intergenic | 40.0% | |
| ACAGAGAAATGAAGGGAAGA+AGG | + | chr6.1:4854428-4854447 | MS.gene074515:intron | 40.0% | |
| ACATGGCTTCGTAACTACAT+TGG | + | chr6.1:4852405-4852424 | MS.gene074515:CDS | 40.0% | |
| AGTCCAATCTCAAAGGTAGA+GGG | + | chr6.1:4854764-4854783 | MS.gene074515:intron | 40.0% | |
| ATAAACAAAGCCAGGCTATG+TGG | - | chr6.1:4855346-4855365 | None:intergenic | 40.0% | |
| ATTACACCGTATGGATGGAT+TGG | + | chr6.1:4855521-4855540 | MS.gene074515:CDS | 40.0% | |
| CAAAGTTAGTGATTCTAGGC+AGG | + | chr6.1:4854625-4854644 | MS.gene074515:intron | 40.0% | |
| CACAACATTAGTGAAACGGA+AGG | + | chr6.1:4854391-4854410 | MS.gene074515:intron | 40.0% | |
| CACGGTTCAGCTACTATAAA+TGG | - | chr6.1:4855175-4855194 | None:intergenic | 40.0% | |
| CATCAAGGATTATCCAAACG+GGG | - | chr6.1:4854265-4854284 | None:intergenic | 40.0% | |
| CATCGCTAAATAACCGATGT+AGG | - | chr6.1:4854018-4854037 | None:intergenic | 40.0% | |
| CGCAATGTTTATCTCCCTAA+AGG | + | chr6.1:4852489-4852508 | MS.gene074515:CDS | 40.0% | |
| CGGAAAATTATGGCCTGTTA+TGG | + | chr6.1:4855447-4855466 | MS.gene074515:CDS | 40.0% | |
| CTGCCTAGAATCACTAACTT+TGG | - | chr6.1:4854627-4854646 | None:intergenic | 40.0% | |
| CTGGAACAATAAACAAAGCC+AGG | - | chr6.1:4855354-4855373 | None:intergenic | 40.0% | |
| GAAAACGCAATGTACATCTC+AGG | + | chr6.1:4853643-4853662 | MS.gene074515:intron | 40.0% | |
| GAAATCTGTTGTTGCAGATG+CGG | + | chr6.1:4853845-4853864 | MS.gene074515:intron | 40.0% | |
| GAACATCCAATCCATCCATA+CGG | - | chr6.1:4855530-4855549 | None:intergenic | 40.0% | |
| GATCAGTTGGATATCATAGC+TGG | - | chr6.1:4853152-4853171 | None:intergenic | 40.0% | |
| GCACCAAGTGTGCAATAAAA+TGG | - | chr6.1:4855378-4855397 | None:intergenic | 40.0% | |
| GGTCCTTCTACATTTACTGT+TGG | + | chr6.1:4852463-4852482 | MS.gene074515:CDS | 40.0% | |
| GTAAGTACAAGTGTCAGTGT+CGG | - | chr6.1:4853470-4853489 | None:intergenic | 40.0% | |
| TCCAAACGGGGATATTATCA+AGG | - | chr6.1:4854253-4854272 | None:intergenic | 40.0% | |
| TCCGAGTACTTGACAGAAAT+CGG | + | chr6.1:4853948-4853967 | MS.gene074515:CDS | 40.0% | |
| TGTAGTTACGAAGCCATGTT+TGG | - | chr6.1:4852404-4852423 | None:intergenic | 40.0% | |
| TTCCAAGGTTCTTCCAAACA+TGG | + | chr6.1:4852388-4852407 | MS.gene074515:CDS | 40.0% | |
| TTGATGAACTCACCAGCAAA+CGG | - | chr6.1:4854161-4854180 | None:intergenic | 40.0% | |
| TTTGGAAGAACCTTGGAAGT+GGG | - | chr6.1:4852386-4852405 | None:intergenic | 40.0% | |
| ! | AAGAATATGGCTCTACGTGA+GGG | - | chr6.1:4853873-4853892 | None:intergenic | 40.0% |
| ! | GCTTGAAGTATTCCATCAAG+AGG | - | chr6.1:4855319-4855338 | None:intergenic | 40.0% |
| ! | TAAGAATATGGCTCTACGTG+AGG | - | chr6.1:4853874-4853893 | None:intergenic | 40.0% |
| ! | TCCTTGATAATATCCCCGTT+TGG | + | chr6.1:4854249-4854268 | MS.gene074515:intron | 40.0% |
| !! | ATTCCCTCTACCTTTGAGAT+TGG | - | chr6.1:4854770-4854789 | None:intergenic | 40.0% |
| !! | GTATGGATGGATTGGATGTT+CGG | + | chr6.1:4855529-4855548 | MS.gene074515:CDS | 40.0% |
| !! | TTGCTTTGAAAGCCATGCAT+TGG | + | chr6.1:4853904-4853923 | MS.gene074515:CDS | 40.0% |
| !! | TTGGCTTTTCATCCTCTTGA+TGG | + | chr6.1:4855304-4855323 | MS.gene074515:CDS | 40.0% |
| ACATATGTCTGACACGACAC+CGG | - | chr6.1:4853442-4853461 | None:intergenic | 45.0% | |
| ACCAGTTAAATCCGCGAGTT+CGG | - | chr6.1:4855088-4855107 | None:intergenic | 45.0% | |
| ACGCCTTCGATCAGAATTGT+TGG | + | chr6.1:4852801-4852820 | MS.gene074515:intron | 45.0% | |
| ACTATGGGCATTACACCGTA+TGG | + | chr6.1:4855512-4855531 | MS.gene074515:CDS | 45.0% | |
| AGCCATGTTTGGAAGAACCT+TGG | - | chr6.1:4852393-4852412 | None:intergenic | 45.0% | |
| AGTACTTGACAGAAATCGGC+TGG | + | chr6.1:4853952-4853971 | MS.gene074515:CDS | 45.0% | |
| ATCTGCACTAACTACGGTTC+AGG | + | chr6.1:4855118-4855137 | MS.gene074515:intron | 45.0% | |
| CAGTCCAATCTCAAAGGTAG+AGG | + | chr6.1:4854763-4854782 | MS.gene074515:intron | 45.0% | |
| CATCCATCGCATATTCGATC+AGG | - | chr6.1:4854658-4854677 | None:intergenic | 45.0% | |
| CCGTACATCTGCACTAACTA+CGG | + | chr6.1:4855112-4855131 | MS.gene074515:intron | 45.0% | |
| CCGTAGTTAGTGCAGATGTA+CGG | - | chr6.1:4855115-4855134 | None:intergenic | 45.0% | |
| CTGGCACGATATCAAGATCA+CGG | - | chr6.1:4855193-4855212 | None:intergenic | 45.0% | |
| GAACCTGATCGAATATGCGA+TGG | + | chr6.1:4854652-4854671 | MS.gene074515:intron | 45.0% | |
| GAGAAATGAAGGGAAGAAGG+AGG | + | chr6.1:4854431-4854450 | MS.gene074515:intron | 45.0% | |
| GGAAGACAGTCCAATCTCAA+AGG | + | chr6.1:4854757-4854776 | MS.gene074515:intron | 45.0% | |
| GTCAAGTACTCGGAAAGAGT+TGG | - | chr6.1:4853942-4853961 | None:intergenic | 45.0% | |
| GTTGGTTGGATTGCCTACAT+CGG | + | chr6.1:4854002-4854021 | MS.gene074515:CDS | 45.0% | |
| GTTTGGAAGAACCTTGGAAG+TGG | - | chr6.1:4852387-4852406 | None:intergenic | 45.0% | |
| TAACTACGGTTCAGGCAGTT+CGG | + | chr6.1:4855126-4855145 | MS.gene074515:intron | 45.0% | |
| TATCGTGCCAGTTCCATATC+TGG | + | chr6.1:4855202-4855221 | MS.gene074515:intron | 45.0% | |
| TCAAGCATTACCACATAGCC+TGG | + | chr6.1:4855333-4855352 | MS.gene074515:CDS | 45.0% | |
| TGATGAACTCACCAGCAAAC+GGG | - | chr6.1:4854160-4854179 | None:intergenic | 45.0% | |
| TGCCAGTTCCATATCTGGTT+TGG | + | chr6.1:4855207-4855226 | MS.gene074515:intron | 45.0% | |
| TGGCTTCGTAACTACATTGG+TGG | + | chr6.1:4852408-4852427 | MS.gene074515:CDS | 45.0% | |
| TTTGAGAGTCCTAGGAAGCA+CGG | + | chr6.1:4853393-4853412 | MS.gene074515:intron | 45.0% | |
| ! | GCCGATTTCTGTCAAGTACT+CGG | - | chr6.1:4853952-4853971 | None:intergenic | 45.0% |
| !!! | TTTTTTTTATTTTTTTTAAG+TGG | + | chr6.1:4852857-4852876 | MS.gene074515:intron | 5.0% |
| AATACTCTCTCCCCGTTTGC+TGG | + | chr6.1:4854146-4854165 | MS.gene074515:CDS | 50.0% | |
| ACCGAACTCGCGGATTTAAC+TGG | + | chr6.1:4855084-4855103 | MS.gene074515:intron | 50.0% | |
| ACTTTGCCTACGTCTTGCTC+GGG | - | chr6.1:4855568-4855587 | None:intergenic | 50.0% | |
| AGCACATGACACTGACACGT+TGG | + | chr6.1:4852735-4852754 | MS.gene074515:intron | 50.0% | |
| AGTGGGACCCACAAAAAGTG+AGG | - | chr6.1:4852369-4852388 | None:intergenic | 50.0% | |
| CACTTTGCCTACGTCTTGCT+CGG | - | chr6.1:4855569-4855588 | None:intergenic | 50.0% | |
| CATATGTCTGACACGACACC+GGG | - | chr6.1:4853441-4853460 | None:intergenic | 50.0% | |
| CTCGAACCAAGACGAAACTG+TGG | - | chr6.1:4855152-4855171 | None:intergenic | 50.0% | |
| GATGAACTCACCAGCAAACG+GGG | - | chr6.1:4854159-4854178 | None:intergenic | 50.0% | |
| GTACACGGAAACTCCTACGT+AGG | + | chr6.1:4854710-4854729 | MS.gene074515:intron | 50.0% | |
| TGGGCATTACACCGTATGGA+TGG | + | chr6.1:4855516-4855535 | MS.gene074515:CDS | 50.0% | |
| TGGTAACCAGCTCCCATAAC+AGG | - | chr6.1:4855463-4855482 | None:intergenic | 50.0% | |
| TTATGGCCTGTTATGGGAGC+TGG | + | chr6.1:4855454-4855473 | MS.gene074515:CDS | 50.0% | |
| ! | ATTCTGATCGAAGGCGTGTC+TGG | - | chr6.1:4852798-4852817 | None:intergenic | 50.0% |
| ! | TAGGAAGCACGGACATTCCT+CGG | + | chr6.1:4853404-4853423 | MS.gene074515:intron | 50.0% |
| ! | TTTTGTGGGTCCCACTTCCA+AGG | + | chr6.1:4852373-4852392 | MS.gene074515:CDS | 50.0% |
| CAGTCACTGGTAGACGAACG+AGG | + | chr6.1:4854465-4854484 | MS.gene074515:intron | 55.0% | |
| GACGTTGCAAAGACAGTCGC+CGG | + | chr6.1:4854489-4854508 | MS.gene074515:intron | 55.0% | |
| GAGGAATGTCCGTGCTTCCT+AGG | - | chr6.1:4853405-4853424 | None:intergenic | 55.0% | |
| GCACGGACATTCCTCGGATT+AGG | + | chr6.1:4853410-4853429 | MS.gene074515:intron | 55.0% | |
| GTTCGGCCACAGTTTCGTCT+TGG | + | chr6.1:4855143-4855162 | MS.gene074515:intron | 55.0% | |
| ! | TCCTCGGATTAGGCATGTCC+CGG | + | chr6.1:4853420-4853439 | MS.gene074515:intron | 55.0% |
| ACCGGGACATGCCTAATCCG+AGG | - | chr6.1:4853424-4853443 | None:intergenic | 60.0% | |
| CACGGACACCAGACACGACA+CGG | - | chr6.1:4853544-4853563 | None:intergenic | 60.0% | |
| GGACGCTGTGTTGCAGTCAC+TGG | + | chr6.1:4854452-4854471 | MS.gene074515:intron | 60.0% | |
| GTCAGTGTCCGTGTCGTGTC+TGG | + | chr6.1:4853533-4853552 | MS.gene074515:intron | 60.0% | |
| TCTCTCACACCCTCCTCTGC+CGG | - | chr6.1:4854511-4854530 | None:intergenic | 60.0% | |
| AAGACAGTCGCCGGCAGAGG+AGG | + | chr6.1:4854498-4854517 | MS.gene074515:intron | 65.0% | |
| AGACAGTCGCCGGCAGAGGA+GGG | + | chr6.1:4854499-4854518 | MS.gene074515:intron | 65.0% | |
| CGCGATCCCGAGCAAGACGT+AGG | + | chr6.1:4855559-4855578 | MS.gene074515:CDS | 65.0% | |
| GCAAAGACAGTCGCCGGCAG+AGG | + | chr6.1:4854495-4854514 | MS.gene074515:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 4852291 | 4855594 | 4852291 | ID=MS.gene074515 |
| chr6.1 | mRNA | 4852291 | 4855594 | 4852291 | ID=MS.gene074515.t1;Parent=MS.gene074515 |
| chr6.1 | exon | 4852291 | 4852510 | 4852291 | ID=MS.gene074515.t1.exon1;Parent=MS.gene074515.t1 |
| chr6.1 | CDS | 4852291 | 4852510 | 4852291 | ID=cds.MS.gene074515.t1;Parent=MS.gene074515.t1 |
| chr6.1 | exon | 4853862 | 4854167 | 4853862 | ID=MS.gene074515.t1.exon2;Parent=MS.gene074515.t1 |
| chr6.1 | CDS | 4853862 | 4854167 | 4853862 | ID=cds.MS.gene074515.t1;Parent=MS.gene074515.t1 |
| chr6.1 | exon | 4855302 | 4855594 | 4855302 | ID=MS.gene074515.t1.exon3;Parent=MS.gene074515.t1 |
| chr6.1 | CDS | 4855302 | 4855594 | 4855302 | ID=cds.MS.gene074515.t1;Parent=MS.gene074515.t1 |
| Gene Sequence |
| Protein sequence |
