Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07566.t1 | AMC32845.1 | 100 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 1.70E-152 | 548.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07566.t1 | Q03227 | 98.1 | 265 | 5 | 0 | 1 | 265 | 1 | 265 | 2.1e-151 | 536.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07566.t1 | A0A120IH45 | 100.0 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 1.2e-152 | 548.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene07566 | -0.802118 | 6.53E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene07566 | -0.821516 | 3.87E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene07566 | -0.821656 | 3.60E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene07566 | -0.801424 | 9.06E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene07566 | -0.815864 | 7.43E-52 | -1.69E-46 |
| MS.gene050759 | MS.gene07566 | -0.811167 | 8.02E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene07566 | -0.827482 | 1.53E-54 | -1.69E-46 |
| MS.gene051198 | MS.gene07566 | -0.809074 | 2.26E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene07566 | -0.814219 | 1.72E-51 | -1.69E-46 |
| MS.gene051574 | MS.gene07566 | -0.805244 | 1.47E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene07566 | -0.814943 | 1.19E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene07566 | -0.803088 | 4.12E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene07566 | -0.821403 | 4.11E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene07566 | -0.820998 | 5.10E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene07566 | -0.80346 | 3.45E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene07566 | -0.810395 | 1.18E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene07566 | -0.823786 | 1.15E-53 | -1.69E-46 |
| MS.gene053931 | MS.gene07566 | -0.818618 | 1.78E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene07566 | -0.815307 | 9.89E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene07566 | -0.809375 | 1.95E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene07566 | -0.814586 | 1.43E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene07566 | -0.810484 | 1.13E-50 | -1.69E-46 |
| MS.gene055841 | MS.gene07566 | -0.816535 | 5.26E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene07566 | -0.80041 | 1.46E-48 | -1.69E-46 |
| MS.gene05604 | MS.gene07566 | -0.819327 | 1.23E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene07566 | -0.800522 | 1.39E-48 | -1.69E-46 |
| MS.gene056173 | MS.gene07566 | -0.800364 | 1.49E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene07566 | -0.800149 | 1.65E-48 | -1.69E-46 |
| MS.gene056506 | MS.gene07566 | -0.801739 | 7.81E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene07566 | -0.819032 | 1.44E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene07566 | -0.815352 | 9.66E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene07566 | -0.807832 | 4.17E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene07566 | -0.810892 | 9.20E-51 | -1.69E-46 |
| MS.gene058548 | MS.gene07566 | -0.809379 | 1.95E-50 | -1.69E-46 |
| MS.gene060137 | MS.gene07566 | 0.808984 | 2.37E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene07566 | -0.814663 | 1.37E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene07566 | -0.8034 | 3.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07566.t1 | MTR_0082s0160 | 99.206 | 252 | 2 | 0 | 1 | 252 | 1 | 252 | 0.0 | 503 |
| MS.gene07566.t1 | MTR_6g032895 | 97.653 | 213 | 5 | 0 | 1 | 213 | 1 | 213 | 6.63e-149 | 416 |
| MS.gene07566.t1 | MTR_0495s0020 | 91.379 | 116 | 5 | 1 | 98 | 213 | 15 | 125 | 1.07e-68 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07566.t1 | ATMG00735 | 95.094 | 265 | 13 | 0 | 1 | 265 | 1 | 265 | 1.86e-174 | 481 |
| MS.gene07566.t1 | AT2G07687 | 95.094 | 265 | 13 | 0 | 1 | 265 | 1 | 265 | 1.86e-174 | 481 |
Find 84 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTTCGGATAGTATTTA+TGG | 0.126182 | 1.2:+62161898 | MS.gene07566:CDS |
| TTCTTAGCAACTGGCTTTCA+TGG | 0.230792 | 1.2:+62161931 | MS.gene07566:CDS |
| GGCTTCTTCTCATTCTTCTT+TGG | 0.238024 | 1.2:+62161636 | MS.gene07566:CDS |
| TCCCATTTGTCTCTATCTAT+TGG | 0.241271 | 1.2:+62162091 | MS.gene07566:CDS |
| TCCAAGTCCATGGCCTATTT+CGG | 0.248265 | 1.2:+62161369 | MS.gene07566:CDS |
| CCAAGTCCATGGCCTATTTC+GGG | 0.257627 | 1.2:+62161370 | MS.gene07566:CDS |
| TCTAAAACCCAAATCCCTTT+TGG | 0.290653 | 1.2:-62161691 | None:intergenic |
| TCAAGCACCCTTCACTATTT+CGG | 0.297061 | 1.2:+62161885 | MS.gene07566:CDS |
| CATCCGGAGCAGCCGTAACT+TGG | 0.313664 | 1.2:+62161755 | MS.gene07566:CDS |
| GGTGCAACACTTCTCAGTTT+GGG | 0.334543 | 1.2:+62161454 | MS.gene07566:CDS |
| GCTCCGAGTGAACCCGAAAT+AGG | 0.356842 | 1.2:-62161382 | None:intergenic |
| AAAGCCAGTTGCTAAGAAAA+AGG | 0.364689 | 1.2:-62161926 | None:intergenic |
| TTCGGGTTCACTCGGAGCTT+TGG | 0.365148 | 1.2:+62161387 | MS.gene07566:CDS |
| CTAGTATTCACTGGCTTTCA+AGG | 0.370584 | 1.2:+62161850 | MS.gene07566:CDS |
| TCCTATATACCATGTTTGTA+TGG | 0.372510 | 1.2:+62161488 | MS.gene07566:CDS |
| CTCCGGATGAAAGGAGAATA+GGG | 0.375707 | 1.2:-62161741 | None:intergenic |
| CATACCAAAGTAGTACAATT+AGG | 0.379974 | 1.2:+62161550 | MS.gene07566:CDS |
| AGAATAGGGGTATTAAGAAA+TGG | 0.383171 | 1.2:-62161727 | None:intergenic |
| TCAGAGGCATTCTTATCATT+TGG | 0.393628 | 1.2:+62161342 | MS.gene07566:CDS |
| GGGTGCAACACTTCTCAGTT+TGG | 0.393739 | 1.2:+62161453 | MS.gene07566:CDS |
| TGGCACCTACGGTAGAGATC+GGG | 0.410967 | 1.2:+62161656 | MS.gene07566:CDS |
| TGGTATATAGGATAAATATT+AGG | 0.419463 | 1.2:-62161477 | None:intergenic |
| TGGTCAGATGACCAAGATAT+TGG | 0.422687 | 1.2:-62162002 | None:intergenic |
| TTGAAGCAGCTGCATGGTAC+TGG | 0.426522 | 1.2:+62162043 | MS.gene07566:CDS |
| CATTTGTCTCTATCTATTGG+TGG | 0.430734 | 1.2:+62162094 | MS.gene07566:CDS |
| ACCATACAAACATGGTATAT+AGG | 0.437844 | 1.2:-62161489 | None:intergenic |
| CCCGAAATAGGCCATGGACT+TGG | 0.441654 | 1.2:-62161370 | None:intergenic |
| GAATAGGGGTATTAAGAAAT+GGG | 0.443493 | 1.2:-62161726 | None:intergenic |
| GCTCCGGATGAAAGGAGAAT+AGG | 0.447641 | 1.2:-62161742 | None:intergenic |
| ACCCCTATTCTCCTTTCATC+CGG | 0.453687 | 1.2:+62161739 | MS.gene07566:CDS |
| AGCCCAAGTTACGGCTGCTC+CGG | 0.457418 | 1.2:-62161758 | None:intergenic |
| ATTTGTCTCTATCTATTGGT+GGG | 0.468958 | 1.2:+62162095 | MS.gene07566:CDS |
| ACCAATAGATAGAGACAAAT+GGG | 0.470792 | 1.2:-62162092 | None:intergenic |
| ATGTACATGCACTCATTTCA+AGG | 0.471926 | 1.2:+62161430 | MS.gene07566:CDS |
| TGTGGTATTCGCCAATATCT+TGG | 0.472546 | 1.2:+62161991 | MS.gene07566:CDS |
| CACCAATAGATAGAGACAAA+TGG | 0.475440 | 1.2:-62162093 | None:intergenic |
| TTGGCACCTACGGTAGAGAT+CGG | 0.478668 | 1.2:+62161655 | MS.gene07566:CDS |
| GTACAATTAGGACCTCGATA+TGG | 0.480031 | 1.2:+62161562 | MS.gene07566:CDS |
| ATTCACTGGCTTTCAAGGAA+TGG | 0.480527 | 1.2:+62161855 | MS.gene07566:CDS |
| AGGTCCTAATTGTACTACTT+TGG | 0.481047 | 1.2:-62161554 | None:intergenic |
| TTTAGTAGCAACCGTTTCAC+TGG | 0.485093 | 1.2:+62161825 | MS.gene07566:CDS |
| AAAGCCAACGTGATGCTCCT+TGG | 0.488653 | 1.2:-62162022 | None:intergenic |
| TCACTGGCTCTAGTATTCAC+TGG | 0.492013 | 1.2:+62161841 | MS.gene07566:CDS |
| GTCTCTATCTATTGGTGGGG+AGG | 0.494921 | 1.2:+62162099 | MS.gene07566:CDS |
| TTCTATTCCGTTCATCGTAT+CGG | 0.511656 | 1.2:+62161585 | MS.gene07566:CDS |
| TGGCCTATTTCGGGTTCACT+CGG | 0.514775 | 1.2:+62161379 | MS.gene07566:CDS |
| TCATTCTTCTTTGGCACCTA+CGG | 0.520018 | 1.2:+62161645 | MS.gene07566:CDS |
| TTACGGCTGCTCCGGATGAA+AGG | 0.531682 | 1.2:-62161750 | None:intergenic |
| ATCCGGAGCAGCCGTAACTT+GGG | 0.536168 | 1.2:+62161756 | MS.gene07566:CDS |
| GGCTCATCATGCTATACTCG+CGG | 0.537898 | 1.2:+62161777 | MS.gene07566:CDS |
| AGCATGATGAGCCCAAGTTA+CGG | 0.549704 | 1.2:-62161767 | None:intergenic |
| TCATGCTATACTCGCGGGGA+AGG | 0.556298 | 1.2:+62161783 | MS.gene07566:CDS |
| GCTCATCATGCTATACTCGC+GGG | 0.559120 | 1.2:+62161778 | MS.gene07566:CDS |
| CTACGTGAATCCACGTTGGA+AGG | 0.559738 | 1.2:+62161523 | MS.gene07566:CDS |
| AATACTATCCGAAATAGTGA+AGG | 0.567530 | 1.2:-62161893 | None:intergenic |
| TTTGTCTCTATCTATTGGTG+GGG | 0.568228 | 1.2:+62162096 | MS.gene07566:CDS |
| CATGTACATCACACCTCCTA+CGG | 0.569933 | 1.2:-62161416 | None:intergenic |
| GAATACTAGAGCCAGTGAAA+CGG | 0.581702 | 1.2:-62161836 | None:intergenic |
| ATTGGTGGGGAGGTATATGA+AGG | 0.582028 | 1.2:+62162109 | MS.gene07566:CDS |
| GCTTTGGCAACCACCGTAGG+AGG | 0.594008 | 1.2:+62161403 | MS.gene07566:CDS |
| TATTCCGTTCATCGTATCGG+AGG | 0.604181 | 1.2:+62161588 | MS.gene07566:CDS |
| AGTGAACCCGAAATAGGCCA+TGG | 0.609935 | 1.2:-62161376 | None:intergenic |
| TGTACATGCACTCATTTCAA+GGG | 0.611690 | 1.2:+62161431 | MS.gene07566:CDS |
| GGCACCTACGGTAGAGATCG+GGG | 0.615963 | 1.2:+62161657 | MS.gene07566:CDS |
| TATATACCATGTTTGTATGG+TGG | 0.617991 | 1.2:+62161491 | MS.gene07566:CDS |
| GTACATCACACCTCCTACGG+TGG | 0.626438 | 1.2:-62161413 | None:intergenic |
| GGAGCTTTGGCAACCACCGT+AGG | 0.627489 | 1.2:+62161400 | MS.gene07566:CDS |
| ATTTGGTAGATCCAAGTCCA+TGG | 0.630274 | 1.2:+62161359 | MS.gene07566:CDS |
| TTGGCTTTGAAGCAGCTGCA+TGG | 0.631703 | 1.2:+62162037 | MS.gene07566:CDS |
| TTAAGAAATGGGATTTCCCG+AGG | 0.638861 | 1.2:-62161715 | None:intergenic |
| CTCATCATGCTATACTCGCG+GGG | 0.640810 | 1.2:+62161779 | MS.gene07566:CDS |
| ATACTATCCGAAATAGTGAA+GGG | 0.643332 | 1.2:-62161892 | None:intergenic |
| GTACATGCACTCATTTCAAG+GGG | 0.657915 | 1.2:+62161432 | MS.gene07566:CDS |
| GGTTTATGATTGAATCTCAG+AGG | 0.661540 | 1.2:+62161326 | None:intergenic |
| TCCGGATGAAAGGAGAATAG+GGG | 0.663915 | 1.2:-62161740 | None:intergenic |
| ATAACCTCCGATACGATGAA+CGG | 0.668960 | 1.2:-62161592 | None:intergenic |
| ATCGCGCCACCATACAAACA+TGG | 0.674686 | 1.2:-62161497 | None:intergenic |
| GGTATGATGTCCTTCCAACG+TGG | 0.683344 | 1.2:-62161533 | None:intergenic |
| ATATCTTGGTCATCTGACCA+AGG | 0.693931 | 1.2:+62162005 | MS.gene07566:CDS |
| GCACCTACGGTAGAGATCGG+GGG | 0.709010 | 1.2:+62161658 | MS.gene07566:CDS |
| TGTTCTACGTGAATCCACGT+TGG | 0.713103 | 1.2:+62161519 | MS.gene07566:CDS |
| CTGACCAAGGAGCATCACGT+TGG | 0.717728 | 1.2:+62162018 | MS.gene07566:CDS |
| AACGGAATAGAACCATATCG+AGG | 0.721827 | 1.2:-62161574 | None:intergenic |
| TACATGCACTCATTTCAAGG+GGG | 0.763302 | 1.2:+62161433 | MS.gene07566:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTATATAGGATAAATATT+AGG | - | chr1.2:62161480-62161499 | None:intergenic | 20.0% |
| ! | ACTATTTCGGATAGTATTTA+TGG | + | chr1.2:62161898-62161917 | MS.gene07566:CDS | 25.0% |
| !!! | TGTTCCTTTTTGCTTTTTTT+CGG | + | chr1.2:62161614-62161633 | MS.gene07566:CDS | 25.0% |
| AATACTATCCGAAATAGTGA+AGG | - | chr1.2:62161896-62161915 | None:intergenic | 30.0% | |
| ACCAATAGATAGAGACAAAT+GGG | - | chr1.2:62162095-62162114 | None:intergenic | 30.0% | |
| ACCATACAAACATGGTATAT+AGG | - | chr1.2:62161492-62161511 | None:intergenic | 30.0% | |
| ATACTATCCGAAATAGTGAA+GGG | - | chr1.2:62161895-62161914 | None:intergenic | 30.0% | |
| ATTTGTCTCTATCTATTGGT+GGG | + | chr1.2:62162095-62162114 | MS.gene07566:CDS | 30.0% | |
| CATACCAAAGTAGTACAATT+AGG | + | chr1.2:62161550-62161569 | MS.gene07566:CDS | 30.0% | |
| TATATACCATGTTTGTATGG+TGG | + | chr1.2:62161491-62161510 | MS.gene07566:CDS | 30.0% | |
| TCCTATATACCATGTTTGTA+TGG | + | chr1.2:62161488-62161507 | MS.gene07566:CDS | 30.0% | |
| ! | CATGGTTTTCATGTGATTAT+AGG | + | chr1.2:62161949-62161968 | MS.gene07566:CDS | 30.0% |
| !! | AGAATAGGGGTATTAAGAAA+TGG | - | chr1.2:62161730-62161749 | None:intergenic | 30.0% |
| !! | GAATAGGGGTATTAAGAAAT+GGG | - | chr1.2:62161729-62161748 | None:intergenic | 30.0% |
| !!! | GTTCCTTTTTGCTTTTTTTC+GGG | + | chr1.2:62161615-62161634 | MS.gene07566:CDS | 30.0% |
| AAAGCCAGTTGCTAAGAAAA+AGG | - | chr1.2:62161929-62161948 | None:intergenic | 35.0% | |
| AAGCCCGAAAAAAAGCAAAA+AGG | - | chr1.2:62161621-62161640 | None:intergenic | 35.0% | |
| AGGTCCTAATTGTACTACTT+TGG | - | chr1.2:62161557-62161576 | None:intergenic | 35.0% | |
| ATGTACATGCACTCATTTCA+AGG | + | chr1.2:62161430-62161449 | MS.gene07566:CDS | 35.0% | |
| CACCAATAGATAGAGACAAA+TGG | - | chr1.2:62162096-62162115 | None:intergenic | 35.0% | |
| CATTTGTCTCTATCTATTGG+TGG | + | chr1.2:62162094-62162113 | MS.gene07566:CDS | 35.0% | |
| TCCCATTTGTCTCTATCTAT+TGG | + | chr1.2:62162091-62162110 | MS.gene07566:CDS | 35.0% | |
| TGTACATGCACTCATTTCAA+GGG | + | chr1.2:62161431-62161450 | MS.gene07566:CDS | 35.0% | |
| TTCTATTCCGTTCATCGTAT+CGG | + | chr1.2:62161585-62161604 | MS.gene07566:CDS | 35.0% | |
| TTTGTCTCTATCTATTGGTG+GGG | + | chr1.2:62162096-62162115 | MS.gene07566:CDS | 35.0% | |
| ! | ACTCTTTTCTTGATCGTATG+TGG | + | chr1.2:62161973-62161992 | MS.gene07566:CDS | 35.0% |
| ! | CTAAAACCCAAATCCCTTTT+GGG | - | chr1.2:62161693-62161712 | None:intergenic | 35.0% |
| ! | TAAAACCCAAATCCCTTTTG+GGG | - | chr1.2:62161692-62161711 | None:intergenic | 35.0% |
| ! | TCTACCTTTTTCTTAGCAAC+TGG | + | chr1.2:62161922-62161941 | MS.gene07566:CDS | 35.0% |
| !! | TCAGAGGCATTCTTATCATT+TGG | + | chr1.2:62161342-62161361 | MS.gene07566:CDS | 35.0% |
| !! | TCTAAAACCCAAATCCCTTT+TGG | - | chr1.2:62161694-62161713 | None:intergenic | 35.0% |
| AACGGAATAGAACCATATCG+AGG | - | chr1.2:62161577-62161596 | None:intergenic | 40.0% | |
| ATAACCTCCGATACGATGAA+CGG | - | chr1.2:62161595-62161614 | None:intergenic | 40.0% | |
| ATATCTTGGTCATCTGACCA+AGG | + | chr1.2:62162005-62162024 | MS.gene07566:CDS | 40.0% | |
| ATTTGGTAGATCCAAGTCCA+TGG | + | chr1.2:62161359-62161378 | MS.gene07566:CDS | 40.0% | |
| GAATACTAGAGCCAGTGAAA+CGG | - | chr1.2:62161839-62161858 | None:intergenic | 40.0% | |
| GGCTTCTTCTCATTCTTCTT+TGG | + | chr1.2:62161636-62161655 | MS.gene07566:CDS | 40.0% | |
| GTACAATTAGGACCTCGATA+TGG | + | chr1.2:62161562-62161581 | MS.gene07566:CDS | 40.0% | |
| GTACATGCACTCATTTCAAG+GGG | + | chr1.2:62161432-62161451 | MS.gene07566:CDS | 40.0% | |
| TACATGCACTCATTTCAAGG+GGG | + | chr1.2:62161433-62161452 | MS.gene07566:CDS | 40.0% | |
| TCAAGCACCCTTCACTATTT+CGG | + | chr1.2:62161885-62161904 | MS.gene07566:CDS | 40.0% | |
| TCATTCTTCTTTGGCACCTA+CGG | + | chr1.2:62161645-62161664 | MS.gene07566:CDS | 40.0% | |
| TGGTCAGATGACCAAGATAT+TGG | - | chr1.2:62162005-62162024 | None:intergenic | 40.0% | |
| TGTGGTATTCGCCAATATCT+TGG | + | chr1.2:62161991-62162010 | MS.gene07566:CDS | 40.0% | |
| TTAAGAAATGGGATTTCCCG+AGG | - | chr1.2:62161718-62161737 | None:intergenic | 40.0% | |
| TTTAGTAGCAACCGTTTCAC+TGG | + | chr1.2:62161825-62161844 | MS.gene07566:CDS | 40.0% | |
| ! | AAAACCCAAATCCCTTTTGG+GGG | - | chr1.2:62161691-62161710 | None:intergenic | 40.0% |
| !! | ATTCACTGGCTTTCAAGGAA+TGG | + | chr1.2:62161855-62161874 | MS.gene07566:CDS | 40.0% |
| !! | CTAGTATTCACTGGCTTTCA+AGG | + | chr1.2:62161850-62161869 | MS.gene07566:CDS | 40.0% |
| !! | TTCTTAGCAACTGGCTTTCA+TGG | + | chr1.2:62161931-62161950 | MS.gene07566:CDS | 40.0% |
| !!! | GATTTGGGTTTTAGATCCTC+GGG | + | chr1.2:62161699-62161718 | MS.gene07566:CDS | 40.0% |
| !!! | GGATTTGGGTTTTAGATCCT+CGG | + | chr1.2:62161698-62161717 | MS.gene07566:CDS | 40.0% |
| ACCCCTATTCTCCTTTCATC+CGG | + | chr1.2:62161739-62161758 | MS.gene07566:CDS | 45.0% | |
| AGCATGATGAGCCCAAGTTA+CGG | - | chr1.2:62161770-62161789 | None:intergenic | 45.0% | |
| CATGTACATCACACCTCCTA+CGG | - | chr1.2:62161419-62161438 | None:intergenic | 45.0% | |
| CTCCGGATGAAAGGAGAATA+GGG | - | chr1.2:62161744-62161763 | None:intergenic | 45.0% | |
| GGTGCAACACTTCTCAGTTT+GGG | + | chr1.2:62161454-62161473 | MS.gene07566:CDS | 45.0% | |
| TATTCCGTTCATCGTATCGG+AGG | + | chr1.2:62161588-62161607 | MS.gene07566:CDS | 45.0% | |
| TCCAAGTCCATGGCCTATTT+CGG | + | chr1.2:62161369-62161388 | MS.gene07566:CDS | 45.0% | |
| TCCGGATGAAAGGAGAATAG+GGG | - | chr1.2:62161743-62161762 | None:intergenic | 45.0% | |
| TGTTCTACGTGAATCCACGT+TGG | + | chr1.2:62161519-62161538 | MS.gene07566:CDS | 45.0% | |
| ! | GGCATTTTGTAGACGTGGTT+CGG | + | chr1.2:62162064-62162083 | MS.gene07566:CDS | 45.0% |
| !! | GTACTGGCATTTTGTAGACG+TGG | + | chr1.2:62162059-62162078 | MS.gene07566:CDS | 45.0% |
| !! | TCACTGGCTCTAGTATTCAC+TGG | + | chr1.2:62161841-62161860 | MS.gene07566:CDS | 45.0% |
| AAAGCCAACGTGATGCTCCT+TGG | - | chr1.2:62162025-62162044 | None:intergenic | 50.0% | |
| AGTGAACCCGAAATAGGCCA+TGG | - | chr1.2:62161379-62161398 | None:intergenic | 50.0% | |
| ATCGCGCCACCATACAAACA+TGG | - | chr1.2:62161500-62161519 | None:intergenic | 50.0% | |
| CCAAGTCCATGGCCTATTTC+GGG | + | chr1.2:62161370-62161389 | MS.gene07566:CDS | 50.0% | |
| CTACGTGAATCCACGTTGGA+AGG | + | chr1.2:62161523-62161542 | MS.gene07566:CDS | 50.0% | |
| CTCATCATGCTATACTCGCG+GGG | + | chr1.2:62161779-62161798 | MS.gene07566:CDS | 50.0% | |
| GCTCATCATGCTATACTCGC+GGG | + | chr1.2:62161778-62161797 | MS.gene07566:CDS | 50.0% | |
| GCTCCGGATGAAAGGAGAAT+AGG | - | chr1.2:62161745-62161764 | None:intergenic | 50.0% | |
| GGCTCATCATGCTATACTCG+CGG | + | chr1.2:62161777-62161796 | MS.gene07566:CDS | 50.0% | |
| GGGTGCAACACTTCTCAGTT+TGG | + | chr1.2:62161453-62161472 | MS.gene07566:CDS | 50.0% | |
| GGTATGATGTCCTTCCAACG+TGG | - | chr1.2:62161536-62161555 | None:intergenic | 50.0% | |
| GTCTCTATCTATTGGTGGGG+AGG | + | chr1.2:62162099-62162118 | MS.gene07566:CDS | 50.0% | |
| TTGAAGCAGCTGCATGGTAC+TGG | + | chr1.2:62162043-62162062 | MS.gene07566:CDS | 50.0% | |
| TTGGCACCTACGGTAGAGAT+CGG | + | chr1.2:62161655-62161674 | MS.gene07566:CDS | 50.0% | |
| TTGGCCCCCAAAAGGGATTT+GGG | + | chr1.2:62161684-62161703 | MS.gene07566:CDS | 50.0% | |
| TTTGGCCCCCAAAAGGGATT+TGG | + | chr1.2:62161683-62161702 | MS.gene07566:CDS | 50.0% | |
| !! | TGGCCTATTTCGGGTTCACT+CGG | + | chr1.2:62161379-62161398 | MS.gene07566:CDS | 50.0% |
| !! | TTGGCTTTGAAGCAGCTGCA+TGG | + | chr1.2:62162037-62162056 | MS.gene07566:CDS | 50.0% |
| ATACCCCCGATCTCTACCGT+AGG | - | chr1.2:62161664-62161683 | None:intergenic | 55.0% | |
| ATCCGGAGCAGCCGTAACTT+GGG | + | chr1.2:62161756-62161775 | MS.gene07566:CDS | 55.0% | |
| CCCGAAATAGGCCATGGACT+TGG | - | chr1.2:62161373-62161392 | None:intergenic | 55.0% | |
| GCTCCGAGTGAACCCGAAAT+AGG | - | chr1.2:62161385-62161404 | None:intergenic | 55.0% | |
| GTACATCACACCTCCTACGG+TGG | - | chr1.2:62161416-62161435 | None:intergenic | 55.0% | |
| TCATGCTATACTCGCGGGGA+AGG | + | chr1.2:62161783-62161802 | MS.gene07566:CDS | 55.0% | |
| TGGCACCTACGGTAGAGATC+GGG | + | chr1.2:62161656-62161675 | MS.gene07566:CDS | 55.0% | |
| TTACGGCTGCTCCGGATGAA+AGG | - | chr1.2:62161753-62161772 | None:intergenic | 55.0% | |
| ! | GGGGTATTTGGCCCCCAAAA+GGG | + | chr1.2:62161677-62161696 | MS.gene07566:CDS | 55.0% |
| ! | TTCGGGTTCACTCGGAGCTT+TGG | + | chr1.2:62161387-62161406 | MS.gene07566:CDS | 55.0% |
| !! | CGGTAGAGATCGGGGGTATT+TGG | + | chr1.2:62161665-62161684 | MS.gene07566:CDS | 55.0% |
| !! | CTGACCAAGGAGCATCACGT+TGG | + | chr1.2:62162018-62162037 | MS.gene07566:CDS | 55.0% |
| AGCCCAAGTTACGGCTGCTC+CGG | - | chr1.2:62161761-62161780 | None:intergenic | 60.0% | |
| CATCCGGAGCAGCCGTAACT+TGG | + | chr1.2:62161755-62161774 | MS.gene07566:CDS | 60.0% | |
| GCACCTACGGTAGAGATCGG+GGG | + | chr1.2:62161658-62161677 | MS.gene07566:CDS | 60.0% | |
| GCTTTGGCAACCACCGTAGG+AGG | + | chr1.2:62161403-62161422 | MS.gene07566:CDS | 60.0% | |
| GGCACCTACGGTAGAGATCG+GGG | + | chr1.2:62161657-62161676 | MS.gene07566:CDS | 60.0% | |
| ! | GGAGCTTTGGCAACCACCGT+AGG | + | chr1.2:62161400-62161419 | MS.gene07566:CDS | 60.0% |
| !! | GGGGGTATTTGGCCCCCAAA+AGG | + | chr1.2:62161676-62161695 | MS.gene07566:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 62161331 | 62162128 | 62161331 | ID=MS.gene07566 |
| chr1.2 | mRNA | 62161331 | 62162128 | 62161331 | ID=MS.gene07566.t1;Parent=MS.gene07566 |
| chr1.2 | exon | 62161331 | 62162128 | 62161331 | ID=MS.gene07566.t1.exon1;Parent=MS.gene07566.t1 |
| chr1.2 | CDS | 62161331 | 62162128 | 62161331 | ID=cds.MS.gene07566.t1;Parent=MS.gene07566.t1 |
| Gene Sequence |
| Protein sequence |
