Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08872.t1 | XP_003606383.1 | 98.2 | 285 | 5 | 0 | 1 | 285 | 1 | 285 | 5.80E-159 | 570.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08872.t1 | Q9ATM4 | 86.1 | 287 | 38 | 2 | 1 | 285 | 1 | 287 | 9.5e-142 | 504.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08872.t1 | G7JPC5 | 98.2 | 285 | 5 | 0 | 1 | 285 | 1 | 285 | 4.2e-159 | 570.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049400 | MS.gene08872 | 0.82755 | 1.47E-54 | -1.69E-46 |
| MS.gene050060 | MS.gene08872 | -0.813136 | 2.98E-51 | -1.69E-46 |
| MS.gene050133 | MS.gene08872 | 0.972669 | 3.82E-135 | -1.69E-46 |
| MS.gene050426 | MS.gene08872 | 0.882507 | 9.84E-71 | -1.69E-46 |
| MS.gene051525 | MS.gene08872 | -0.824141 | 9.48E-54 | -1.69E-46 |
| MS.gene051552 | MS.gene08872 | 0.819521 | 1.11E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene08872 | -0.811468 | 6.90E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene08872 | 0.855306 | 6.89E-62 | -1.69E-46 |
| MS.gene052077 | MS.gene08872 | -0.802138 | 6.47E-49 | -1.69E-46 |
| MS.gene052134 | MS.gene08872 | -0.835752 | 1.40E-56 | -1.69E-46 |
| MS.gene052135 | MS.gene08872 | -0.826542 | 2.56E-54 | -1.69E-46 |
| MS.gene052223 | MS.gene08872 | 0.803929 | 2.76E-49 | -1.69E-46 |
| MS.gene052469 | MS.gene08872 | -0.840647 | 7.67E-58 | -1.69E-46 |
| MS.gene052589 | MS.gene08872 | -0.815687 | 8.14E-52 | -1.69E-46 |
| MS.gene052758 | MS.gene08872 | -0.803507 | 3.37E-49 | -1.69E-46 |
| MS.gene053330 | MS.gene08872 | -0.855583 | 5.72E-62 | -1.69E-46 |
| MS.gene054102 | MS.gene08872 | -0.821785 | 3.36E-53 | -1.69E-46 |
| MS.gene054110 | MS.gene08872 | -0.810279 | 1.25E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene08872 | -0.819825 | 9.48E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene08872 | -0.81772 | 2.85E-52 | -1.69E-46 |
| MS.gene054556 | MS.gene08872 | -0.801814 | 7.54E-49 | -1.69E-46 |
| MS.gene054719 | MS.gene08872 | -0.820525 | 6.55E-53 | -1.69E-46 |
| MS.gene054809 | MS.gene08872 | 0.800416 | 1.46E-48 | -1.69E-46 |
| MS.gene055369 | MS.gene08872 | -0.801316 | 9.54E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene08872 | -0.808988 | 2.36E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene08872 | -0.852681 | 3.94E-61 | -1.69E-46 |
| MS.gene05556 | MS.gene08872 | -0.869195 | 3.71E-66 | -1.69E-46 |
| MS.gene056330 | MS.gene08872 | 0.804448 | 2.15E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene08872 | -0.846518 | 2.07E-59 | -1.69E-46 |
| MS.gene056723 | MS.gene08872 | -0.805284 | 1.44E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene08872 | 0.824236 | 9.00E-54 | -1.69E-46 |
| MS.gene057396 | MS.gene08872 | -0.8272 | 1.78E-54 | -1.69E-46 |
| MS.gene059011 | MS.gene08872 | -0.823084 | 1.68E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene08872 | -0.819068 | 1.41E-52 | -1.69E-46 |
| MS.gene059512 | MS.gene08872 | -0.808091 | 3.67E-50 | -1.69E-46 |
| MS.gene059717 | MS.gene08872 | -0.802621 | 5.14E-49 | -1.69E-46 |
| MS.gene059868 | MS.gene08872 | -0.805655 | 1.20E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene08872 | 0.819382 | 1.20E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene08872 | -0.825227 | 5.26E-54 | -1.69E-46 |
| MS.gene061159 | MS.gene08872 | -0.813488 | 2.50E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08872.t1 | MTR_4g059390 | 98.246 | 285 | 5 | 0 | 1 | 285 | 1 | 285 | 0.0 | 571 |
| MS.gene08872.t1 | MTR_2g094270 | 85.017 | 287 | 41 | 2 | 1 | 285 | 1 | 287 | 1.31e-180 | 499 |
| MS.gene08872.t1 | MTR_7g101190 | 80.702 | 285 | 55 | 0 | 1 | 285 | 1 | 285 | 2.12e-173 | 480 |
| MS.gene08872.t1 | MTR_3g118010 | 77.695 | 269 | 54 | 1 | 16 | 284 | 14 | 276 | 1.50e-155 | 435 |
| MS.gene08872.t1 | MTR_2g094270 | 84.000 | 250 | 38 | 2 | 1 | 248 | 1 | 250 | 2.06e-154 | 432 |
| MS.gene08872.t1 | MTR_4g059390 | 99.010 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 6.67e-147 | 410 |
| MS.gene08872.t1 | MTR_8g098375 | 67.293 | 266 | 80 | 2 | 12 | 276 | 25 | 284 | 7.04e-132 | 375 |
| MS.gene08872.t1 | MTR_5g082070 | 68.015 | 272 | 80 | 3 | 7 | 277 | 23 | 288 | 4.96e-131 | 373 |
| MS.gene08872.t1 | MTR_5g010150 | 68.165 | 267 | 78 | 2 | 12 | 277 | 25 | 285 | 7.32e-131 | 373 |
| MS.gene08872.t1 | MTR_4g415300 | 66.171 | 269 | 85 | 1 | 9 | 277 | 26 | 288 | 1.22e-130 | 372 |
| MS.gene08872.t1 | MTR_3g070210 | 65.217 | 276 | 89 | 2 | 3 | 277 | 19 | 288 | 2.71e-130 | 371 |
| MS.gene08872.t1 | MTR_1g095070 | 83.163 | 196 | 33 | 0 | 89 | 284 | 23 | 218 | 1.40e-119 | 342 |
| MS.gene08872.t1 | MTR_3g070210 | 66.000 | 250 | 78 | 2 | 3 | 251 | 19 | 262 | 2.36e-116 | 336 |
| MS.gene08872.t1 | MTR_1g095070 | 84.375 | 160 | 25 | 0 | 89 | 248 | 23 | 182 | 8.32e-97 | 283 |
| MS.gene08872.t1 | MTR_8g098375 | 62.085 | 211 | 71 | 3 | 12 | 219 | 25 | 229 | 7.83e-90 | 267 |
| MS.gene08872.t1 | MTR_3g070210 | 64.179 | 201 | 65 | 2 | 3 | 202 | 19 | 213 | 4.05e-88 | 261 |
| MS.gene08872.t1 | MTR_5g010150 | 67.188 | 192 | 56 | 2 | 12 | 202 | 25 | 210 | 4.99e-87 | 259 |
| MS.gene08872.t1 | MTR_4g415300 | 64.948 | 194 | 62 | 1 | 9 | 202 | 26 | 213 | 5.54e-87 | 259 |
| MS.gene08872.t1 | MTR_2g101370 | 38.494 | 239 | 125 | 6 | 39 | 273 | 20 | 240 | 3.52e-39 | 137 |
| MS.gene08872.t1 | MTR_8g013680 | 39.224 | 232 | 119 | 6 | 39 | 266 | 19 | 232 | 3.64e-36 | 130 |
| MS.gene08872.t1 | MTR_5g012810 | 37.712 | 236 | 130 | 5 | 39 | 273 | 19 | 238 | 1.03e-34 | 126 |
| MS.gene08872.t1 | MTR_1g077540 | 36.052 | 233 | 133 | 6 | 39 | 270 | 21 | 238 | 3.87e-32 | 119 |
| MS.gene08872.t1 | MTR_7g103030 | 33.600 | 250 | 149 | 6 | 30 | 278 | 12 | 245 | 1.22e-31 | 118 |
| MS.gene08872.t1 | MTR_1g115405 | 35.366 | 246 | 135 | 7 | 30 | 270 | 12 | 238 | 2.74e-31 | 117 |
| MS.gene08872.t1 | MTR_4g063090 | 33.610 | 241 | 135 | 7 | 44 | 278 | 26 | 247 | 2.51e-30 | 114 |
| MS.gene08872.t1 | MTR_6g069040 | 36.179 | 246 | 135 | 6 | 29 | 270 | 11 | 238 | 4.45e-30 | 114 |
| MS.gene08872.t1 | MTR_1g006590 | 33.462 | 260 | 134 | 11 | 30 | 278 | 10 | 241 | 3.47e-29 | 111 |
| MS.gene08872.t1 | MTR_1g006490 | 34.263 | 251 | 130 | 11 | 30 | 271 | 10 | 234 | 4.28e-28 | 108 |
| MS.gene08872.t1 | MTR_7g023350 | 34.728 | 239 | 132 | 7 | 39 | 272 | 21 | 240 | 4.75e-27 | 106 |
| MS.gene08872.t1 | MTR_2g060360 | 34.426 | 244 | 138 | 8 | 30 | 270 | 11 | 235 | 4.39e-23 | 95.5 |
| MS.gene08872.t1 | MTR_5g079570 | 30.208 | 192 | 114 | 5 | 82 | 269 | 73 | 248 | 2.69e-19 | 85.5 |
| MS.gene08872.t1 | MTR_8g087710 | 30.222 | 225 | 132 | 7 | 37 | 259 | 37 | 238 | 5.83e-19 | 84.7 |
| MS.gene08872.t1 | MTR_4g075570 | 26.641 | 259 | 156 | 8 | 22 | 259 | 27 | 272 | 9.05e-18 | 82.4 |
| MS.gene08872.t1 | MTR_4g075590 | 27.309 | 249 | 154 | 8 | 27 | 261 | 25 | 260 | 1.11e-17 | 81.6 |
| MS.gene08872.t1 | MTR_5g063930 | 29.381 | 194 | 124 | 4 | 78 | 269 | 65 | 247 | 1.40e-17 | 80.9 |
| MS.gene08872.t1 | MTR_2g017660 | 29.487 | 234 | 138 | 7 | 39 | 269 | 39 | 248 | 2.81e-17 | 80.1 |
| MS.gene08872.t1 | MTR_4g084880 | 30.220 | 182 | 107 | 4 | 82 | 259 | 71 | 236 | 4.35e-17 | 79.7 |
| MS.gene08872.t1 | MTR_3g008920 | 28.646 | 192 | 117 | 5 | 82 | 269 | 59 | 234 | 3.56e-16 | 77.0 |
| MS.gene08872.t1 | MTR_8g087720 | 28.452 | 239 | 143 | 7 | 36 | 271 | 35 | 248 | 7.75e-16 | 75.9 |
| MS.gene08872.t1 | MTR_2g104940 | 28.899 | 218 | 131 | 7 | 43 | 259 | 84 | 278 | 1.70e-15 | 75.5 |
| MS.gene08872.t1 | MTR_7g010650 | 27.753 | 227 | 134 | 6 | 37 | 259 | 35 | 235 | 2.64e-15 | 74.7 |
| MS.gene08872.t1 | MTR_4g006730 | 27.206 | 272 | 153 | 9 | 21 | 282 | 68 | 304 | 2.71e-15 | 75.1 |
| MS.gene08872.t1 | MTR_2g017620 | 28.444 | 225 | 136 | 6 | 37 | 259 | 22 | 223 | 6.78e-15 | 73.2 |
| MS.gene08872.t1 | MTR_2g017620 | 28.444 | 225 | 136 | 6 | 37 | 259 | 36 | 237 | 8.40e-15 | 73.2 |
| MS.gene08872.t1 | MTR_2g017590 | 29.412 | 238 | 140 | 8 | 37 | 271 | 34 | 246 | 1.34e-14 | 72.4 |
| MS.gene08872.t1 | MTR_4g006630 | 28.889 | 180 | 115 | 4 | 80 | 259 | 20 | 186 | 1.84e-13 | 68.6 |
| MS.gene08872.t1 | MTR_4g006730 | 28.889 | 180 | 115 | 4 | 80 | 259 | 20 | 186 | 1.84e-13 | 68.6 |
| MS.gene08872.t1 | MTR_2g017610 | 30.928 | 194 | 113 | 7 | 82 | 271 | 72 | 248 | 2.12e-13 | 68.9 |
| MS.gene08872.t1 | MTR_1g097840 | 26.506 | 249 | 160 | 7 | 36 | 283 | 71 | 297 | 2.94e-13 | 68.9 |
| MS.gene08872.t1 | MTR_2g017570 | 29.534 | 193 | 117 | 6 | 82 | 271 | 72 | 248 | 4.73e-13 | 68.2 |
| MS.gene08872.t1 | MTR_2g017620 | 30.588 | 170 | 102 | 4 | 92 | 259 | 1 | 156 | 9.15e-13 | 65.9 |
| MS.gene08872.t1 | MTR_1g070385 | 26.050 | 238 | 149 | 6 | 36 | 271 | 59 | 271 | 3.66e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08872.t1 | AT2G37170 | 79.649 | 285 | 56 | 1 | 1 | 285 | 44 | 326 | 1.30e-168 | 470 |
| MS.gene08872.t1 | AT5G60660 | 79.152 | 283 | 59 | 0 | 1 | 283 | 1 | 283 | 1.43e-168 | 468 |
| MS.gene08872.t1 | AT2G37170 | 79.649 | 285 | 56 | 1 | 1 | 285 | 1 | 283 | 5.46e-168 | 467 |
| MS.gene08872.t1 | AT2G37180 | 78.596 | 285 | 59 | 1 | 1 | 285 | 1 | 283 | 3.79e-165 | 459 |
| MS.gene08872.t1 | AT3G53420 | 77.895 | 285 | 63 | 0 | 1 | 285 | 1 | 285 | 1.14e-163 | 456 |
| MS.gene08872.t1 | AT3G53420 | 77.895 | 285 | 63 | 0 | 1 | 285 | 1 | 285 | 1.14e-163 | 456 |
| MS.gene08872.t1 | AT4G35100 | 77.224 | 281 | 57 | 2 | 6 | 285 | 4 | 278 | 4.50e-159 | 444 |
| MS.gene08872.t1 | AT4G35100 | 77.224 | 281 | 57 | 2 | 6 | 285 | 4 | 278 | 4.50e-159 | 444 |
| MS.gene08872.t1 | AT2G39010 | 74.296 | 284 | 72 | 1 | 1 | 284 | 1 | 283 | 9.75e-159 | 443 |
| MS.gene08872.t1 | AT3G54820 | 74.648 | 284 | 71 | 1 | 1 | 284 | 1 | 283 | 4.15e-158 | 442 |
| MS.gene08872.t1 | AT2G16850 | 76.344 | 279 | 59 | 2 | 6 | 284 | 4 | 275 | 5.01e-155 | 434 |
| MS.gene08872.t1 | AT4G00430 | 67.897 | 271 | 81 | 1 | 7 | 277 | 21 | 285 | 9.23e-133 | 377 |
| MS.gene08872.t1 | AT2G45960 | 68.182 | 264 | 78 | 1 | 14 | 277 | 27 | 284 | 3.10e-130 | 371 |
| MS.gene08872.t1 | AT4G23400 | 67.669 | 266 | 80 | 1 | 12 | 277 | 26 | 285 | 3.70e-124 | 356 |
| MS.gene08872.t1 | AT1G01620 | 69.084 | 262 | 75 | 1 | 16 | 277 | 29 | 284 | 5.36e-124 | 355 |
| MS.gene08872.t1 | AT3G61430 | 67.424 | 264 | 80 | 1 | 14 | 277 | 27 | 284 | 1.94e-122 | 351 |
| MS.gene08872.t1 | AT3G61430 | 67.424 | 264 | 80 | 1 | 14 | 277 | 27 | 284 | 1.94e-122 | 351 |
| MS.gene08872.t1 | AT2G45960 | 70.213 | 235 | 64 | 1 | 14 | 248 | 27 | 255 | 2.91e-117 | 338 |
| MS.gene08872.t1 | AT2G45960 | 70.213 | 235 | 64 | 1 | 14 | 248 | 27 | 255 | 3.73e-116 | 336 |
| MS.gene08872.t1 | AT1G01620 | 73.892 | 203 | 53 | 0 | 75 | 277 | 10 | 212 | 2.23e-107 | 310 |
| MS.gene08872.t1 | AT2G39010 | 72.772 | 202 | 54 | 1 | 1 | 202 | 1 | 201 | 4.78e-106 | 307 |
| MS.gene08872.t1 | AT4G00430 | 67.692 | 195 | 57 | 1 | 12 | 206 | 26 | 214 | 6.80e-90 | 266 |
| MS.gene08872.t1 | AT3G16240 | 39.669 | 242 | 120 | 7 | 39 | 274 | 19 | 240 | 5.27e-37 | 132 |
| MS.gene08872.t1 | AT5G47450 | 37.959 | 245 | 124 | 7 | 36 | 273 | 16 | 239 | 4.55e-36 | 129 |
| MS.gene08872.t1 | AT3G26520 | 35.510 | 245 | 136 | 8 | 30 | 270 | 13 | 239 | 4.81e-33 | 122 |
| MS.gene08872.t1 | AT1G73190 | 36.290 | 248 | 135 | 7 | 30 | 270 | 15 | 246 | 1.06e-32 | 121 |
| MS.gene08872.t1 | AT4G17340 | 36.842 | 247 | 118 | 7 | 39 | 273 | 19 | 239 | 2.81e-32 | 119 |
| MS.gene08872.t1 | AT4G01470 | 34.677 | 248 | 138 | 6 | 31 | 273 | 13 | 241 | 8.54e-32 | 118 |
| MS.gene08872.t1 | AT1G17810 | 35.484 | 248 | 137 | 7 | 30 | 270 | 15 | 246 | 5.03e-31 | 117 |
| MS.gene08872.t1 | AT2G36830 | 34.156 | 243 | 136 | 7 | 30 | 267 | 12 | 235 | 1.21e-30 | 115 |
| MS.gene08872.t1 | AT2G25810 | 35.081 | 248 | 129 | 11 | 30 | 270 | 10 | 232 | 3.20e-26 | 103 |
| MS.gene08872.t1 | AT3G47440 | 31.780 | 236 | 138 | 7 | 39 | 270 | 23 | 239 | 4.25e-24 | 98.6 |
| MS.gene08872.t1 | AT4G19030 | 28.030 | 264 | 159 | 8 | 3 | 259 | 22 | 261 | 3.47e-17 | 80.1 |
| MS.gene08872.t1 | AT1G31885 | 28.794 | 257 | 148 | 8 | 24 | 273 | 34 | 262 | 4.04e-17 | 80.5 |
| MS.gene08872.t1 | AT5G37820 | 28.571 | 189 | 121 | 4 | 82 | 269 | 77 | 252 | 6.96e-15 | 73.6 |
| MS.gene08872.t1 | AT5G37810 | 27.128 | 188 | 125 | 3 | 82 | 269 | 77 | 252 | 8.38e-15 | 73.2 |
| MS.gene08872.t1 | AT5G37820 | 28.571 | 189 | 121 | 4 | 82 | 269 | 113 | 288 | 1.05e-14 | 73.6 |
| MS.gene08872.t1 | AT1G31885 | 29.557 | 203 | 123 | 6 | 78 | 273 | 19 | 208 | 4.76e-14 | 70.9 |
| MS.gene08872.t1 | AT2G34390 | 26.616 | 263 | 155 | 10 | 15 | 269 | 31 | 263 | 5.27e-14 | 71.2 |
| MS.gene08872.t1 | AT4G10380 | 26.877 | 253 | 155 | 9 | 36 | 282 | 75 | 303 | 7.32e-14 | 70.9 |
| MS.gene08872.t1 | AT2G34390 | 28.141 | 199 | 123 | 5 | 78 | 269 | 36 | 221 | 1.83e-13 | 68.9 |
| MS.gene08872.t1 | AT3G06100 | 28.205 | 234 | 141 | 8 | 39 | 269 | 46 | 255 | 4.53e-12 | 65.5 |
| MS.gene08872.t1 | AT4G18910 | 25.483 | 259 | 171 | 6 | 5 | 259 | 18 | 258 | 6.47e-12 | 65.1 |
| MS.gene08872.t1 | AT3G06100 | 29.185 | 233 | 134 | 10 | 42 | 269 | 1 | 207 | 7.69e-11 | 61.2 |
Find 92 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTATTGCTTGGGCTTT+TGG | 0.189425 | 4.2:+44289058 | MS.gene08872:CDS |
| CTGTGATGGTGTTGGAATTT+TGG | 0.191069 | 4.2:+44289039 | MS.gene08872:CDS |
| TCTACAATGACGGCAAAATT+TGG | 0.226952 | 4.2:+44289970 | MS.gene08872:CDS |
| GAAGGATCCAAGAGCTTTAA+TGG | 0.276736 | 4.2:-44290881 | None:intergenic |
| GTGATGAACAGTGGATATTC+TGG | 0.300046 | 4.2:+44290794 | MS.gene08872:intron |
| ATCAACCCTGCCGTGACATT+CGG | 0.336178 | 4.2:+44289468 | MS.gene08872:CDS |
| ATTAACCCGGCAAGAAGTTT+CGG | 0.346372 | 4.2:+44289936 | MS.gene08872:CDS |
| TTCTGGGTTGGTCCAATGAT+TGG | 0.360668 | 4.2:+44290811 | MS.gene08872:CDS |
| AAAGCATACTTTGACAGATA+TGG | 0.361824 | 4.2:+44289594 | MS.gene08872:CDS |
| TTAATACCGGTGCCGGTAAT+GGG | 0.367427 | 4.2:-44289918 | None:intergenic |
| TTAAAGCTCTTGGATCCTTC+AGG | 0.374939 | 4.2:+44290884 | MS.gene08872:CDS |
| CAGTCAGTACCACCAGCTTT+AGG | 0.379125 | 4.2:-44289019 | None:intergenic |
| ACGGAAGGTGTCCTTGATTA+GGG | 0.379672 | 4.2:+44289503 | MS.gene08872:CDS |
| GACGGAAGGTGTCCTTGATT+AGG | 0.381530 | 4.2:+44289502 | MS.gene08872:CDS |
| TACAACAAAGGCACAGCTTT+GGG | 0.390836 | 4.2:+44289645 | MS.gene08872:CDS |
| GCTGATCCGAAACTTCTTGC+CGG | 0.395043 | 4.2:-44289942 | None:intergenic |
| GCCACAGCAGCTCCAATCAT+TGG | 0.399751 | 4.2:-44290823 | None:intergenic |
| TCAACCCTGCCGTGACATTC+GGG | 0.401248 | 4.2:+44289469 | MS.gene08872:CDS |
| TACTGCACCGCCGGTATCTC+TGG | 0.401254 | 4.2:+44289103 | MS.gene08872:CDS |
| CTACAATGACGGCAAAATTT+GGG | 0.403017 | 4.2:+44289971 | MS.gene08872:CDS |
| GAGTCCCTAGCGTTCCTCTT+AGG | 0.403026 | 4.2:-44289723 | None:intergenic |
| TGGTCAAAACAGTGACATAA+AGG | 0.409034 | 4.2:-44288970 | None:intergenic |
| GGTTCAGCCATTAAAGCTCT+TGG | 0.411321 | 4.2:+44290874 | MS.gene08872:CDS |
| GTTAATACCGGTGCCGGTAA+TGG | 0.415684 | 4.2:-44289919 | None:intergenic |
| ATGATTGGAGCTGCTGTGGC+TGG | 0.418679 | 4.2:+44290826 | MS.gene08872:CDS |
| CGGCAAAATTTGGGATGATC+AGG | 0.427962 | 4.2:+44289980 | MS.gene08872:CDS |
| TTGGAAACCTTTGGCAAGTC+CGG | 0.439461 | 4.2:-44289571 | None:intergenic |
| TCTATCAATGGTGCTGGAGG+TGG | 0.446868 | 4.2:-44288878 | None:intergenic |
| CTACAACAAAGGCACAGCTT+TGG | 0.447010 | 4.2:+44289644 | MS.gene08872:CDS |
| TTGGCTACTATCCCCATTAC+CGG | 0.452301 | 4.2:+44289906 | MS.gene08872:CDS |
| ACTTCTTGCCGGGTTAATAC+CGG | 0.464164 | 4.2:-44289931 | None:intergenic |
| ATTCATGATGGCTACAACAA+AGG | 0.473294 | 4.2:+44289633 | MS.gene08872:CDS |
| TGATGAACAGTGGATATTCT+GGG | 0.485567 | 4.2:+44290795 | MS.gene08872:intron |
| CTGAACCTCTTAGAATGTAT+TGG | 0.489928 | 4.2:-44290858 | None:intergenic |
| TACATGGCAGCACAGTGTGC+CGG | 0.490463 | 4.2:+44289534 | MS.gene08872:CDS |
| CTGATCCGAAACTTCTTGCC+GGG | 0.491559 | 4.2:-44289941 | None:intergenic |
| CTGGTGACTATAACCAATAA+TGG | 0.494832 | 4.2:-44288990 | None:intergenic |
| ATCCTTGTTTACTGCACCGC+CGG | 0.495855 | 4.2:+44289094 | MS.gene08872:CDS |
| TGCCGGGTTAATACCGGTGC+CGG | 0.514335 | 4.2:-44289925 | None:intergenic |
| GCCGGCGCAATCTGTGGTAC+CGG | 0.516181 | 4.2:+44289552 | MS.gene08872:CDS |
| CGTGACATTCGGGCTATTCG+TGG | 0.516571 | 4.2:+44289479 | MS.gene08872:CDS |
| AACTCCTCAACATCTATCAA+TGG | 0.521123 | 4.2:-44288890 | None:intergenic |
| TCAACATCTATCAATGGTGC+TGG | 0.524124 | 4.2:-44288884 | None:intergenic |
| GTAAAACACTGCCCTAATCA+AGG | 0.525985 | 4.2:-44289514 | None:intergenic |
| CTGATCCTAAGAGGAACGCT+AGG | 0.529650 | 4.2:+44289718 | MS.gene08872:CDS |
| TACCACCAATACATTCTAAG+AGG | 0.529657 | 4.2:+44290853 | MS.gene08872:CDS |
| TCCAATGATTGGAGCTGCTG+TGG | 0.531304 | 4.2:+44290822 | MS.gene08872:CDS |
| GTAGCCATCATGAATAAAGT+TGG | 0.531597 | 4.2:-44289625 | None:intergenic |
| GCTTTGGGTGCTGAAATCAT+TGG | 0.533586 | 4.2:+44289660 | MS.gene08872:CDS |
| GGTGCCAACTTTATTCATGA+TGG | 0.535166 | 4.2:+44289621 | MS.gene08872:CDS |
| TTATAGCATACCAGAGATAC+CGG | 0.539251 | 4.2:-44289113 | None:intergenic |
| CTATCAATGGTGCTGGAGGT+GGG | 0.552912 | 4.2:-44288877 | None:intergenic |
| AATAGCCCGAATGTCACGGC+AGG | 0.553742 | 4.2:-44289474 | None:intergenic |
| ATGAAAACAGCAAATCCAAT+GGG | 0.555341 | 4.2:-44289876 | None:intergenic |
| CACCAGTCTGATCCTAAAGC+TGG | 0.557436 | 4.2:+44289007 | MS.gene08872:CDS |
| TAATTAAGCATTGCTCCTGA+AGG | 0.559103 | 4.2:-44290899 | None:intergenic |
| AACCTCTTAGAATGTATTGG+TGG | 0.561973 | 4.2:-44290855 | None:intergenic |
| CGGGCTATTCGTGGGACGGA+AGG | 0.562748 | 4.2:+44289488 | MS.gene08872:CDS |
| TTTGCCGTCATTGTAGATCA+CGG | 0.565178 | 4.2:-44289964 | None:intergenic |
| ACTATCCCCATTACCGGCAC+CGG | 0.571652 | 4.2:+44289912 | MS.gene08872:CDS |
| GGTACTGACTGTGATGGTGT+TGG | 0.572709 | 4.2:+44289031 | MS.gene08872:CDS |
| ACAGCAAATCCAATGGGAAG+TGG | 0.574194 | 4.2:-44289870 | None:intergenic |
| TCTCTGCCACTGATCCTAAG+AGG | 0.575062 | 4.2:+44289709 | MS.gene08872:CDS |
| AGCACCATTGATAGATGTTG+AGG | 0.575497 | 4.2:+44288886 | MS.gene08872:CDS |
| TACCGGCGGTGCAGTAAACA+AGG | 0.576199 | 4.2:-44289096 | None:intergenic |
| GATGTTGAGGTTCAAGAACA+AGG | 0.576725 | 4.2:+44288827 | MS.gene08872:CDS |
| CAGTGTGCCGGCGCAATCTG+TGG | 0.577018 | 4.2:+44289546 | MS.gene08872:CDS |
| CACGAATAGCCCGAATGTCA+CGG | 0.582521 | 4.2:-44289478 | None:intergenic |
| ATTATATGCTTACAGGAACA+TGG | 0.583004 | 4.2:-44289746 | None:intergenic |
| CAATATGGCTAAAGATGTTG+AGG | 0.583700 | 4.2:+44288814 | None:intergenic |
| AGCGTTCCTCTTAGGATCAG+TGG | 0.589665 | 4.2:-44289715 | None:intergenic |
| ACATCTATCAATGGTGCTGG+AGG | 0.589837 | 4.2:-44288881 | None:intergenic |
| TACCGGCACCGGTATTAACC+CGG | 0.590468 | 4.2:+44289923 | MS.gene08872:CDS |
| TAATACCGGTGCCGGTAATG+GGG | 0.593819 | 4.2:-44289917 | None:intergenic |
| TGTGGTACCGGACTTGCCAA+AGG | 0.598591 | 4.2:+44289564 | MS.gene08872:CDS |
| CATGAAAACAGCAAATCCAA+TGG | 0.600094 | 4.2:-44289877 | None:intergenic |
| TACTTTGACAGATATGGAGG+TGG | 0.607215 | 4.2:+44289600 | MS.gene08872:CDS |
| GTGACATTCGGGCTATTCGT+GGG | 0.608893 | 4.2:+44289480 | MS.gene08872:CDS |
| CACCAGCTTTAGGATCAGAC+TGG | 0.622507 | 4.2:-44289009 | None:intergenic |
| TCCGGTACCACAGATTGCGC+CGG | 0.626783 | 4.2:-44289553 | None:intergenic |
| GACAGTGTAGACAAGAACAA+AGG | 0.629321 | 4.2:-44289685 | None:intergenic |
| GCATACTTTGACAGATATGG+AGG | 0.633916 | 4.2:+44289597 | MS.gene08872:CDS |
| CATTCGGGCTATTCGTGGGA+CGG | 0.637960 | 4.2:+44289484 | MS.gene08872:CDS |
| TTATATGCTTACAGGAACAT+GGG | 0.643732 | 4.2:-44289745 | None:intergenic |
| CAGTCTGATCCTAAAGCTGG+TGG | 0.645930 | 4.2:+44289010 | MS.gene08872:CDS |
| GCTGGTGGTACTGACTGTGA+TGG | 0.654915 | 4.2:+44289025 | MS.gene08872:CDS |
| TGATCCTAAGAGGAACGCTA+GGG | 0.663624 | 4.2:+44289719 | MS.gene08872:CDS |
| GAACAGTGGATATTCTGGGT+TGG | 0.667916 | 4.2:+44290799 | MS.gene08872:intron |
| ATAGCCCGAATGTCACGGCA+GGG | 0.681726 | 4.2:-44289473 | None:intergenic |
| TCAGCCGTGATCTACAATGA+CGG | 0.682863 | 4.2:+44289960 | MS.gene08872:CDS |
| ATGTTGAGGAGTTAACAAAG+TGG | 0.737517 | 4.2:+44288900 | MS.gene08872:CDS |
| TAGCATACCAGAGATACCGG+CGG | 0.755151 | 4.2:-44289110 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAACATAATTAATTATA+TGG | - | chr4.2:44290013-44290032 | None:intergenic | 10.0% |
| !! | CACTTTAATTAATAATTTAA+GGG | - | chr4.2:44290555-44290574 | None:intergenic | 10.0% |
| !! | TCACTTTAATTAATAATTTA+AGG | - | chr4.2:44290556-44290575 | None:intergenic | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr4.2:44290391-44290410 | MS.gene08872:intron | 10.0% |
| !!! | ATAAGTAATTTTTTTTTGTA+GGG | + | chr4.2:44290452-44290471 | MS.gene08872:intron | 10.0% |
| !!! | CATATAATTAATTATGTTTT+TGG | + | chr4.2:44290011-44290030 | MS.gene08872:intron | 10.0% |
| !!! | TATAAGTAATTTTTTTTTGT+AGG | + | chr4.2:44290451-44290470 | MS.gene08872:intron | 10.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr4.2:44290141-44290160 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr4.2:44290481-44290500 | MS.gene08872:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr4.2:44290500-44290481 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr4.2:44290260-44290279 | None:intergenic | 15.0% |
| !! | TAAAGTTTGTCTATAATATA+AGG | - | chr4.2:44290640-44290659 | None:intergenic | 15.0% |
| !! | TGATAAAATACAAACAAATA+TGG | - | chr4.2:44289217-44289236 | None:intergenic | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | + | chr4.2:44290420-44290439 | MS.gene08872:intron | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | - | chr4.2:44290225-44290244 | None:intergenic | 15.0% |
| !!! | CTTTATATTTTTCAGTTTTT+AGG | + | chr4.2:44290655-44290674 | MS.gene08872:intron | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | + | chr4.2:44290419-44290438 | MS.gene08872:intron | 15.0% |
| !!! | TATTTTAGAAGACTTTAATT+AGG | + | chr4.2:44290601-44290620 | MS.gene08872:intron | 15.0% |
| !!! | TTAAAGTCTTCTAAAATAAA+CGG | - | chr4.2:44290599-44290618 | None:intergenic | 15.0% |
| !!! | TTTTATAGATAAATGTTAGT+TGG | + | chr4.2:44289392-44289411 | MS.gene08872:intron | 15.0% |
| !! | AGTACTTATTATGAAGAAAA+AGG | - | chr4.2:44289798-44289817 | None:intergenic | 20.0% |
| !! | GTTTATAATTATATGCTTAC+AGG | - | chr4.2:44289756-44289775 | None:intergenic | 20.0% |
| !! | TATATTAACAAGTTTATGTG+TGG | + | chr4.2:44289423-44289442 | MS.gene08872:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr4.2:44290171-44290190 | MS.gene08872:intron | 20.0% |
| !!! | TTAAGGGTTAATTATGTTTT+TGG | - | chr4.2:44290539-44290558 | None:intergenic | 20.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | - | chr4.2:44290130-44290149 | None:intergenic | 25.0% |
| ! | AATTAGATGAGAAGAGTTTA+TGG | + | chr4.2:44289327-44289346 | MS.gene08872:intron | 25.0% |
| ! | AGAAGACTTTAATTAGGTTT+AGG | + | chr4.2:44290607-44290626 | MS.gene08872:intron | 25.0% |
| ! | CATAACTATAACTATGTGTT+TGG | + | chr4.2:44289823-44289842 | MS.gene08872:intron | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | + | chr4.2:44290195-44290214 | MS.gene08872:intron | 25.0% |
| AAAGCATACTTTGACAGATA+TGG | + | chr4.2:44289594-44289613 | MS.gene08872:CDS | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | + | chr4.2:44290496-44290515 | MS.gene08872:intron | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | - | chr4.2:44290515-44290496 | None:intergenic | 30.0% | |
| ATGAAAACAGCAAATCCAAT+GGG | - | chr4.2:44289879-44289898 | None:intergenic | 30.0% | |
| ATTATATGCTTACAGGAACA+TGG | - | chr4.2:44289749-44289768 | None:intergenic | 30.0% | |
| TTATATGCTTACAGGAACAT+GGG | - | chr4.2:44289748-44289767 | None:intergenic | 30.0% | |
| ! | ATCTGTCAAAGTATGCTTTT+TGG | - | chr4.2:44289593-44289612 | None:intergenic | 30.0% |
| ! | CAAGTTTAGAACACTATGAA+CGG | - | chr4.2:44290357-44290376 | None:intergenic | 30.0% |
| ! | GTGAAATGATGAAAAGGTTT+TGG | + | chr4.2:44289845-44289864 | MS.gene08872:intron | 30.0% |
| ! | TACAAGGTTGCAATTTTGTA+GGG | + | chr4.2:44290512-44290531 | MS.gene08872:intron | 30.0% |
| ! | TGTTTGGTGAAATGATGAAA+AGG | + | chr4.2:44289839-44289858 | MS.gene08872:intron | 30.0% |
| ! | TTACAAGGTTGCAATTTTGT+AGG | + | chr4.2:44290511-44290530 | MS.gene08872:intron | 30.0% |
| !!! | ATTGTTTTTGTGATGAACAG+TGG | + | chr4.2:44290785-44290804 | MS.gene08872:intron | 30.0% |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr4.2:44290098-44290117 | None:intergenic | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr4.2:44290099-44290118 | None:intergenic | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | - | chr4.2:44290222-44290241 | None:intergenic | 30.0% |
| AACCTCTTAGAATGTATTGG+TGG | - | chr4.2:44290858-44290877 | None:intergenic | 35.0% | |
| AACTCCTCAACATCTATCAA+TGG | - | chr4.2:44288893-44288912 | None:intergenic | 35.0% | |
| ATGTTGAGGAGTTAACAAAG+TGG | + | chr4.2:44288900-44288919 | MS.gene08872:CDS | 35.0% | |
| ATTCATGATGGCTACAACAA+AGG | + | chr4.2:44289633-44289652 | MS.gene08872:CDS | 35.0% | |
| CATGAAAACAGCAAATCCAA+TGG | - | chr4.2:44289880-44289899 | None:intergenic | 35.0% | |
| CTACAATGACGGCAAAATTT+GGG | + | chr4.2:44289971-44289990 | MS.gene08872:CDS | 35.0% | |
| CTGAACCTCTTAGAATGTAT+TGG | - | chr4.2:44290861-44290880 | None:intergenic | 35.0% | |
| CTGGTGACTATAACCAATAA+TGG | - | chr4.2:44288993-44289012 | None:intergenic | 35.0% | |
| GTAGCCATCATGAATAAAGT+TGG | - | chr4.2:44289628-44289647 | None:intergenic | 35.0% | |
| TACACATGCAAGGACTTTAT+AGG | + | chr4.2:44289152-44289171 | MS.gene08872:intron | 35.0% | |
| TACCACCAATACATTCTAAG+AGG | + | chr4.2:44290853-44290872 | MS.gene08872:CDS | 35.0% | |
| TCTACAATGACGGCAAAATT+TGG | + | chr4.2:44289970-44289989 | MS.gene08872:CDS | 35.0% | |
| TGATGAACAGTGGATATTCT+GGG | + | chr4.2:44290795-44290814 | MS.gene08872:intron | 35.0% | |
| TGGTCAAAACAGTGACATAA+AGG | - | chr4.2:44288973-44288992 | None:intergenic | 35.0% | |
| TTATAGCATACCAGAGATAC+CGG | - | chr4.2:44289116-44289135 | None:intergenic | 35.0% | |
| !! | GTATGCTTTTTGGAAACCTT+TGG | - | chr4.2:44289583-44289602 | None:intergenic | 35.0% |
| !! | TGGAATTTTGGGTATTGCTT+GGG | + | chr4.2:44289051-44289070 | MS.gene08872:CDS | 35.0% |
| !! | TGTGATGGTGTTGGAATTTT+GGG | + | chr4.2:44289040-44289059 | MS.gene08872:CDS | 35.0% |
| !! | TTGGAATTTTGGGTATTGCT+TGG | + | chr4.2:44289050-44289069 | MS.gene08872:CDS | 35.0% |
| !!! | CATTGGATTTGCTGTTTTCA+TGG | + | chr4.2:44289878-44289897 | MS.gene08872:CDS | 35.0% |
| !!! | GTCACTGTTTTGACCATTAT+TGG | + | chr4.2:44288977-44288996 | MS.gene08872:CDS | 35.0% |
| !!! | TGTTTTTGGTCCCTACAAAA+TGG | + | chr4.2:44290025-44290044 | MS.gene08872:intron | 35.0% |
| AGCACCATTGATAGATGTTG+AGG | + | chr4.2:44288886-44288905 | MS.gene08872:CDS | 40.0% | |
| ATGTGTGGAATTGTGATCAC+AGG | + | chr4.2:44289438-44289457 | MS.gene08872:intron | 40.0% | |
| ATTAACCCGGCAAGAAGTTT+CGG | + | chr4.2:44289936-44289955 | MS.gene08872:CDS | 40.0% | |
| GACAGTGTAGACAAGAACAA+AGG | - | chr4.2:44289688-44289707 | None:intergenic | 40.0% | |
| GATGTTGAGGTTCAAGAACA+AGG | + | chr4.2:44288827-44288846 | MS.gene08872:CDS | 40.0% | |
| GCATACTTTGACAGATATGG+AGG | + | chr4.2:44289597-44289616 | MS.gene08872:CDS | 40.0% | |
| GGTGCCAACTTTATTCATGA+TGG | + | chr4.2:44289621-44289640 | MS.gene08872:CDS | 40.0% | |
| GTAAAACACTGCCCTAATCA+AGG | - | chr4.2:44289517-44289536 | None:intergenic | 40.0% | |
| GTGATGAACAGTGGATATTC+TGG | + | chr4.2:44290794-44290813 | MS.gene08872:intron | 40.0% | |
| TACTTTGACAGATATGGAGG+TGG | + | chr4.2:44289600-44289619 | MS.gene08872:CDS | 40.0% | |
| TCAACATCTATCAATGGTGC+TGG | - | chr4.2:44288887-44288906 | None:intergenic | 40.0% | |
| TTAAAGCTCTTGGATCCTTC+AGG | + | chr4.2:44290884-44290903 | MS.gene08872:CDS | 40.0% | |
| TTTGCCGTCATTGTAGATCA+CGG | - | chr4.2:44289967-44289986 | None:intergenic | 40.0% | |
| ! | GAAGGATCCAAGAGCTTTAA+TGG | - | chr4.2:44290884-44290903 | None:intergenic | 40.0% |
| ! | GATTAGGGCAGTGTTTTACA+TGG | + | chr4.2:44289518-44289537 | MS.gene08872:CDS | 40.0% |
| ! | TACAACAAAGGCACAGCTTT+GGG | + | chr4.2:44289645-44289664 | MS.gene08872:CDS | 40.0% |
| !! | CTGTGATGGTGTTGGAATTT+TGG | + | chr4.2:44289039-44289058 | MS.gene08872:CDS | 40.0% |
| !! | TACAAGGTCGCCATTTTGTA+GGG | - | chr4.2:44290038-44290057 | None:intergenic | 40.0% |
| !! | TTACAAGGTCGCCATTTTGT+AGG | - | chr4.2:44290039-44290058 | None:intergenic | 40.0% |
| !!! | TGCTGTTTTCATGGTTCACT+TGG | + | chr4.2:44289887-44289906 | MS.gene08872:CDS | 40.0% |
| ACAGCAAATCCAATGGGAAG+TGG | - | chr4.2:44289873-44289892 | None:intergenic | 45.0% | |
| ACTTCTTGCCGGGTTAATAC+CGG | - | chr4.2:44289934-44289953 | None:intergenic | 45.0% | |
| ATGGCATGCAACCCTAGTTA+GGG | - | chr4.2:44289198-44289217 | None:intergenic | 45.0% | |
| CTCACTCTCTTACACATGCA+AGG | + | chr4.2:44289142-44289161 | MS.gene08872:intron | 45.0% | |
| GAACAGTGGATATTCTGGGT+TGG | + | chr4.2:44290799-44290818 | MS.gene08872:intron | 45.0% | |
| GGTTCAGCCATTAAAGCTCT+TGG | + | chr4.2:44290874-44290893 | MS.gene08872:CDS | 45.0% | |
| TATGGCATGCAACCCTAGTT+AGG | - | chr4.2:44289199-44289218 | None:intergenic | 45.0% | |
| TCAGCCGTGATCTACAATGA+CGG | + | chr4.2:44289960-44289979 | MS.gene08872:CDS | 45.0% | |
| TGATCCTAAGAGGAACGCTA+GGG | + | chr4.2:44289719-44289738 | MS.gene08872:CDS | 45.0% | |
| TGCATGTGTAAGAGAGTGAG+AGG | - | chr4.2:44289142-44289161 | None:intergenic | 45.0% | |
| TGTGGAATTGTGATCACAGG+AGG | + | chr4.2:44289441-44289460 | MS.gene08872:intron | 45.0% | |
| TTGGAAACCTTTGGCAAGTC+CGG | - | chr4.2:44289574-44289593 | None:intergenic | 45.0% | |
| TTGGCTACTATCCCCATTAC+CGG | + | chr4.2:44289906-44289925 | MS.gene08872:CDS | 45.0% | |
| ! | ACATCTATCAATGGTGCTGG+AGG | - | chr4.2:44288884-44288903 | None:intergenic | 45.0% |
| ! | CGGCAAAATTTGGGATGATC+AGG | + | chr4.2:44289980-44289999 | MS.gene08872:CDS | 45.0% |
| ! | CTACAACAAAGGCACAGCTT+TGG | + | chr4.2:44289644-44289663 | MS.gene08872:CDS | 45.0% |
| !! | ACGGAAGGTGTCCTTGATTA+GGG | + | chr4.2:44289503-44289522 | MS.gene08872:CDS | 45.0% |
| !! | GCTTTGGGTGCTGAAATCAT+TGG | + | chr4.2:44289660-44289679 | MS.gene08872:CDS | 45.0% |
| !! | TTAATACCGGTGCCGGTAAT+GGG | - | chr4.2:44289921-44289940 | None:intergenic | 45.0% |
| !! | TTCTGGGTTGGTCCAATGAT+TGG | + | chr4.2:44290811-44290830 | MS.gene08872:CDS | 45.0% |
| !! | TTGGGTATTGCTTGGGCTTT+TGG | + | chr4.2:44289058-44289077 | MS.gene08872:CDS | 45.0% |
| AGCGTTCCTCTTAGGATCAG+TGG | - | chr4.2:44289718-44289737 | None:intergenic | 50.0% | |
| ATCAACCCTGCCGTGACATT+CGG | + | chr4.2:44289468-44289487 | MS.gene08872:CDS | 50.0% | |
| CACCAGTCTGATCCTAAAGC+TGG | + | chr4.2:44289007-44289026 | MS.gene08872:CDS | 50.0% | |
| CACGAATAGCCCGAATGTCA+CGG | - | chr4.2:44289481-44289500 | None:intergenic | 50.0% | |
| CAGTCAGTACCACCAGCTTT+AGG | - | chr4.2:44289022-44289041 | None:intergenic | 50.0% | |
| CAGTCTGATCCTAAAGCTGG+TGG | + | chr4.2:44289010-44289029 | MS.gene08872:CDS | 50.0% | |
| CTGATCCGAAACTTCTTGCC+GGG | - | chr4.2:44289944-44289963 | None:intergenic | 50.0% | |
| CTGATCCTAAGAGGAACGCT+AGG | + | chr4.2:44289718-44289737 | MS.gene08872:CDS | 50.0% | |
| GCTGATCCGAAACTTCTTGC+CGG | - | chr4.2:44289945-44289964 | None:intergenic | 50.0% | |
| GTGACATTCGGGCTATTCGT+GGG | + | chr4.2:44289480-44289499 | MS.gene08872:CDS | 50.0% | |
| TAGCATACCAGAGATACCGG+CGG | - | chr4.2:44289113-44289132 | None:intergenic | 50.0% | |
| TCCAATGATTGGAGCTGCTG+TGG | + | chr4.2:44290822-44290841 | MS.gene08872:CDS | 50.0% | |
| TCTCTGCCACTGATCCTAAG+AGG | + | chr4.2:44289709-44289728 | MS.gene08872:CDS | 50.0% | |
| ! | ATCCTTGTTTACTGCACCGC+CGG | + | chr4.2:44289094-44289113 | MS.gene08872:CDS | 50.0% |
| ! | CTATCAATGGTGCTGGAGGT+GGG | - | chr4.2:44288880-44288899 | None:intergenic | 50.0% |
| ! | GGTATTGCTTGGGCTTTTGG+TGG | + | chr4.2:44289061-44289080 | MS.gene08872:CDS | 50.0% |
| ! | TCTATCAATGGTGCTGGAGG+TGG | - | chr4.2:44288881-44288900 | None:intergenic | 50.0% |
| !! | CACCAGCTTTAGGATCAGAC+TGG | - | chr4.2:44289012-44289031 | None:intergenic | 50.0% |
| !! | GACGGAAGGTGTCCTTGATT+AGG | + | chr4.2:44289502-44289521 | MS.gene08872:CDS | 50.0% |
| !! | GGTACTGACTGTGATGGTGT+TGG | + | chr4.2:44289031-44289050 | MS.gene08872:CDS | 50.0% |
| !! | GTTAATACCGGTGCCGGTAA+TGG | - | chr4.2:44289922-44289941 | None:intergenic | 50.0% |
| !! | GTTTTGGCACCACTTCCCAT+TGG | + | chr4.2:44289861-44289880 | MS.gene08872:CDS | 50.0% |
| !! | TAATACCGGTGCCGGTAATG+GGG | - | chr4.2:44289920-44289939 | None:intergenic | 50.0% |
| AATAGCCCGAATGTCACGGC+AGG | - | chr4.2:44289477-44289496 | None:intergenic | 55.0% | |
| ACGACGCAGCAACCCTAACT+AGG | + | chr4.2:44289183-44289202 | MS.gene08872:intron | 55.0% | |
| ACTATCCCCATTACCGGCAC+CGG | + | chr4.2:44289912-44289931 | MS.gene08872:CDS | 55.0% | |
| ATAGCCCGAATGTCACGGCA+GGG | - | chr4.2:44289476-44289495 | None:intergenic | 55.0% | |
| ATGATTGGAGCTGCTGTGGC+TGG | + | chr4.2:44290826-44290845 | MS.gene08872:CDS | 55.0% | |
| CATTCGGGCTATTCGTGGGA+CGG | + | chr4.2:44289484-44289503 | MS.gene08872:CDS | 55.0% | |
| CGACGCAGCAACCCTAACTA+GGG | + | chr4.2:44289184-44289203 | MS.gene08872:intron | 55.0% | |
| CGTGACATTCGGGCTATTCG+TGG | + | chr4.2:44289479-44289498 | MS.gene08872:CDS | 55.0% | |
| GAGTCCCTAGCGTTCCTCTT+AGG | - | chr4.2:44289726-44289745 | None:intergenic | 55.0% | |
| GCCACAGCAGCTCCAATCAT+TGG | - | chr4.2:44290826-44290845 | None:intergenic | 55.0% | |
| TACATGGCAGCACAGTGTGC+CGG | + | chr4.2:44289534-44289553 | MS.gene08872:CDS | 55.0% | |
| TACCGGCGGTGCAGTAAACA+AGG | - | chr4.2:44289099-44289118 | None:intergenic | 55.0% | |
| TCAACCCTGCCGTGACATTC+GGG | + | chr4.2:44289469-44289488 | MS.gene08872:CDS | 55.0% | |
| ! | TGTGGTACCGGACTTGCCAA+AGG | + | chr4.2:44289564-44289583 | MS.gene08872:CDS | 55.0% |
| !! | GCTGGTGGTACTGACTGTGA+TGG | + | chr4.2:44289025-44289044 | MS.gene08872:CDS | 55.0% |
| !! | TACCGGCACCGGTATTAACC+CGG | + | chr4.2:44289923-44289942 | MS.gene08872:CDS | 55.0% |
| TACTGCACCGCCGGTATCTC+TGG | + | chr4.2:44289103-44289122 | MS.gene08872:CDS | 60.0% | |
| TCCGGTACCACAGATTGCGC+CGG | - | chr4.2:44289556-44289575 | None:intergenic | 60.0% | |
| TGCCGGGTTAATACCGGTGC+CGG | - | chr4.2:44289928-44289947 | None:intergenic | 60.0% | |
| CGGGCTATTCGTGGGACGGA+AGG | + | chr4.2:44289488-44289507 | MS.gene08872:CDS | 65.0% | |
| GCCGGCGCAATCTGTGGTAC+CGG | + | chr4.2:44289552-44289571 | MS.gene08872:CDS | 65.0% | |
| ! | CAGTGTGCCGGCGCAATCTG+TGG | + | chr4.2:44289546-44289565 | MS.gene08872:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 44288818 | 44290918 | 44288818 | ID=MS.gene08872 |
| chr4.2 | mRNA | 44288818 | 44290918 | 44288818 | ID=MS.gene08872.t1;Parent=MS.gene08872 |
| chr4.2 | exon | 44288818 | 44289124 | 44288818 | ID=MS.gene08872.t1.exon1;Parent=MS.gene08872.t1 |
| chr4.2 | CDS | 44288818 | 44289124 | 44288818 | ID=cds.MS.gene08872.t1;Parent=MS.gene08872.t1 |
| chr4.2 | exon | 44289460 | 44289755 | 44289460 | ID=MS.gene08872.t1.exon2;Parent=MS.gene08872.t1 |
| chr4.2 | CDS | 44289460 | 44289755 | 44289460 | ID=cds.MS.gene08872.t1;Parent=MS.gene08872.t1 |
| chr4.2 | exon | 44289861 | 44290001 | 44289861 | ID=MS.gene08872.t1.exon3;Parent=MS.gene08872.t1 |
| chr4.2 | CDS | 44289861 | 44290001 | 44289861 | ID=cds.MS.gene08872.t1;Parent=MS.gene08872.t1 |
| chr4.2 | exon | 44290805 | 44290918 | 44290805 | ID=MS.gene08872.t1.exon4;Parent=MS.gene08872.t1 |
| chr4.2 | CDS | 44290805 | 44290918 | 44290805 | ID=cds.MS.gene08872.t1;Parent=MS.gene08872.t1 |
| Gene Sequence |
| Protein sequence |
