Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96973.t1 | XP_013449918.1 | 98.5 | 203 | 3 | 0 | 11 | 213 | 10 | 212 | 1.60E-68 | 269.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96973.t1 | Q941D5 | 88.4 | 199 | 23 | 0 | 13 | 211 | 12 | 210 | 1.3e-58 | 227.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96973.t1 | A0A072U3L4 | 98.5 | 203 | 3 | 0 | 11 | 213 | 10 | 212 | 1.1e-68 | 269.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene96973 | 0.805717 | 1.17E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene96973 | 0.827535 | 1.48E-54 | -1.69E-46 |
| MS.gene049419 | MS.gene96973 | -0.832519 | 9.03E-56 | -1.69E-46 |
| MS.gene049499 | MS.gene96973 | 0.824565 | 7.54E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene96973 | 0.815379 | 9.53E-52 | -1.69E-46 |
| MS.gene050300 | MS.gene96973 | -0.800911 | 1.15E-48 | -1.69E-46 |
| MS.gene050941 | MS.gene96973 | 0.801795 | 7.61E-49 | -1.69E-46 |
| MS.gene051184 | MS.gene96973 | 0.818807 | 1.62E-52 | -1.69E-46 |
| MS.gene051275 | MS.gene96973 | 0.800827 | 1.20E-48 | -1.69E-46 |
| MS.gene051490 | MS.gene96973 | 0.813407 | 2.60E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene96973 | 0.822355 | 2.48E-53 | -1.69E-46 |
| MS.gene051655 | MS.gene96973 | 0.803927 | 2.76E-49 | -1.69E-46 |
| MS.gene051831 | MS.gene96973 | 0.817673 | 2.92E-52 | -1.69E-46 |
| MS.gene051832 | MS.gene96973 | 0.800795 | 1.22E-48 | -1.69E-46 |
| MS.gene052464 | MS.gene96973 | 0.816734 | 4.75E-52 | -1.69E-46 |
| MS.gene052493 | MS.gene96973 | 0.840117 | 1.05E-57 | -1.69E-46 |
| MS.gene052674 | MS.gene96973 | 0.816801 | 4.59E-52 | -1.69E-46 |
| MS.gene052675 | MS.gene96973 | 0.81151 | 6.75E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene96973 | 0.810537 | 1.10E-50 | -1.69E-46 |
| MS.gene052685 | MS.gene96973 | 0.824234 | 9.01E-54 | -1.69E-46 |
| MS.gene052686 | MS.gene96973 | 0.808397 | 3.16E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene96973 | 0.805462 | 1.32E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene96973 | 0.810959 | 8.89E-51 | -1.69E-46 |
| MS.gene053298 | MS.gene96973 | 0.838828 | 2.28E-57 | -1.69E-46 |
| MS.gene053340 | MS.gene96973 | 0.814332 | 1.63E-51 | -1.69E-46 |
| MS.gene053726 | MS.gene96973 | 0.825123 | 5.56E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene96973 | 0.847834 | 9.00E-60 | -1.69E-46 |
| MS.gene054222 | MS.gene96973 | 0.825326 | 4.98E-54 | -1.69E-46 |
| MS.gene05439 | MS.gene96973 | 0.832351 | 9.93E-56 | -1.69E-46 |
| MS.gene054479 | MS.gene96973 | 0.828789 | 7.39E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene96973 | 0.872495 | 3.04E-67 | -1.69E-46 |
| MS.gene054893 | MS.gene96973 | 0.876642 | 1.19E-68 | -1.69E-46 |
| MS.gene055147 | MS.gene96973 | 0.819449 | 1.15E-52 | -1.69E-46 |
| MS.gene055149 | MS.gene96973 | 0.823976 | 1.04E-53 | -1.69E-46 |
| MS.gene055226 | MS.gene96973 | 0.816721 | 4.78E-52 | -1.69E-46 |
| MS.gene055864 | MS.gene96973 | 0.801949 | 7.07E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene96973 | 0.805411 | 1.35E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene96973 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene96973 | 0.803887 | 2.81E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene96973 | 0.807895 | 4.04E-50 | -1.69E-46 |
| MS.gene057155 | MS.gene96973 | 0.827628 | 1.41E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene96973 | 0.805097 | 1.57E-49 | -1.69E-46 |
| MS.gene057622 | MS.gene96973 | 0.825825 | 3.79E-54 | -1.69E-46 |
| MS.gene058159 | MS.gene96973 | 0.839089 | 1.95E-57 | -1.69E-46 |
| MS.gene058429 | MS.gene96973 | 0.845734 | 3.38E-59 | -1.69E-46 |
| MS.gene058592 | MS.gene96973 | 0.812471 | 4.17E-51 | -1.69E-46 |
| MS.gene05878 | MS.gene96973 | 0.809404 | 1.92E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene96973 | 0.806488 | 8.03E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene96973 | 0.841395 | 4.88E-58 | -1.69E-46 |
| MS.gene05956 | MS.gene96973 | 0.804735 | 1.87E-49 | -1.69E-46 |
| MS.gene059774 | MS.gene96973 | 0.816545 | 5.23E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene96973 | -0.807366 | 5.24E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene96973 | 0.804452 | 2.15E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene96973 | 0.851797 | 7.02E-61 | -1.69E-46 |
| MS.gene060412 | MS.gene96973 | 0.843404 | 1.43E-58 | -1.69E-46 |
| MS.gene060413 | MS.gene96973 | 0.809702 | 1.66E-50 | -1.69E-46 |
| MS.gene060520 | MS.gene96973 | 0.814702 | 1.35E-51 | -1.69E-46 |
| MS.gene060697 | MS.gene96973 | 0.815777 | 7.77E-52 | -1.69E-46 |
| MS.gene060840 | MS.gene96973 | 0.819367 | 1.21E-52 | -1.69E-46 |
| MS.gene060850 | MS.gene96973 | 0.845173 | 4.79E-59 | -1.69E-46 |
| MS.gene060851 | MS.gene96973 | 0.842005 | 3.37E-58 | -1.69E-46 |
| MS.gene060852 | MS.gene96973 | 0.842799 | 2.07E-58 | -1.69E-46 |
| MS.gene060879 | MS.gene96973 | 0.80401 | 2.65E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene96973 | 0.849155 | 3.88E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051184 | MS.gene96973 | PPI |
| MS.gene96973 | MS.gene09166 | PPI |
| MS.gene96973 | MS.gene98009 | PPI |
| MS.gene96973 | MS.gene09111 | PPI |
| MS.gene96973 | MS.gene007726 | PPI |
| MS.gene96973 | MS.gene049786 | PPI |
| MS.gene033909 | MS.gene96973 | PPI |
| MS.gene96973 | MS.gene75911 | PPI |
| MS.gene96973 | MS.gene75244 | PPI |
| MS.gene96973 | MS.gene025196 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96973.t1 | MTR_7g097170 | 95.694 | 209 | 9 | 0 | 5 | 213 | 4 | 212 | 2.23e-144 | 401 |
| MS.gene96973.t1 | MTR_1g069715 | 82.587 | 201 | 35 | 0 | 13 | 213 | 477 | 677 | 6.35e-117 | 347 |
| MS.gene96973.t1 | MTR_2g047875 | 78.325 | 203 | 40 | 1 | 13 | 211 | 12 | 214 | 1.04e-105 | 303 |
| MS.gene96973.t1 | MTR_2g041190 | 43.439 | 221 | 115 | 2 | 1 | 211 | 1 | 221 | 8.79e-42 | 141 |
| MS.gene96973.t1 | MTR_8g019700 | 48.045 | 179 | 93 | 0 | 1 | 179 | 1 | 179 | 3.81e-40 | 137 |
| MS.gene96973.t1 | MTR_4g057565 | 32.948 | 173 | 106 | 2 | 15 | 182 | 18 | 185 | 1.41e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96973.t1 | AT1G03950 | 86.432 | 199 | 27 | 0 | 13 | 211 | 12 | 210 | 2.92e-123 | 347 |
| MS.gene96973.t1 | AT5G44560 | 73.684 | 209 | 45 | 1 | 13 | 211 | 12 | 220 | 2.39e-105 | 303 |
| MS.gene96973.t1 | AT5G44560 | 73.500 | 200 | 43 | 1 | 22 | 211 | 1 | 200 | 1.47e-100 | 290 |
| MS.gene96973.t1 | AT5G44560 | 77.844 | 167 | 37 | 0 | 13 | 179 | 12 | 178 | 1.43e-91 | 266 |
| MS.gene96973.t1 | AT5G44560 | 78.740 | 127 | 27 | 0 | 13 | 139 | 12 | 138 | 1.54e-68 | 207 |
| MS.gene96973.t1 | AT2G06530 | 47.867 | 211 | 99 | 4 | 12 | 211 | 13 | 223 | 5.95e-45 | 149 |
| MS.gene96973.t1 | AT2G06530 | 46.766 | 201 | 96 | 4 | 22 | 211 | 2 | 202 | 1.24e-40 | 137 |
| MS.gene96973.t1 | AT5G22950 | 29.954 | 217 | 128 | 4 | 15 | 212 | 18 | 229 | 7.48e-15 | 71.2 |
Find 41 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTGTGCCGATTGTTTC+TGG | 0.092577 | 7.4:-12378116 | None:intergenic |
| ATAACTTTGGCTTGCTTTGC+TGG | 0.189100 | 7.4:-12378084 | None:intergenic |
| GCAACAGATTGCTAATCTTC+AGG | 0.286548 | 7.4:+12377030 | MS.gene96973:CDS |
| CTTTGCTGCGATTCTCCCTT+TGG | 0.289266 | 7.4:-12379333 | None:intergenic |
| ATAGGTATTGAGAGGGAAAT+TGG | 0.295401 | 7.4:+12376644 | MS.gene96973:intron |
| GGCAATGTCAGCTATGAATA+AGG | 0.369472 | 7.4:+12377279 | MS.gene96973:CDS |
| TTTGCTGCGATTCTCCCTTT+GGG | 0.375553 | 7.4:-12379332 | None:intergenic |
| TACTAGCTCGTCAGCTGATA+AGG | 0.390691 | 7.4:+12377002 | MS.gene96973:CDS |
| CTGGAATTCCTGCATAACTT+TGG | 0.413362 | 7.4:-12378097 | None:intergenic |
| GGAAATTGGATCATTACAAT+TGG | 0.414552 | 7.4:+12376658 | MS.gene96973:CDS |
| TGCTAATCTTCAGGGTAGTC+GGG | 0.416103 | 7.4:+12377039 | MS.gene96973:CDS |
| GCACATTCTTCTGTTGCTGT+TGG | 0.431120 | 7.4:+12377238 | MS.gene96973:CDS |
| CGATGACCTTGAGAAGCGTT+TGG | 0.438236 | 7.4:+12379630 | MS.gene96973:CDS |
| TCTGTTGCTGTTGGCATGAA+AGG | 0.439539 | 7.4:+12377247 | MS.gene96973:CDS |
| CAACAGATTGCTAATCTTCA+GGG | 0.455803 | 7.4:+12377031 | MS.gene96973:CDS |
| TTGCTAATCTTCAGGGTAGT+CGG | 0.468100 | 7.4:+12377038 | MS.gene96973:CDS |
| TGACAGGTGCTTGATGAAAT+CGG | 0.480841 | 7.4:+12379196 | MS.gene96973:intron |
| TGGCATGAAAGGCGCTACTA+AGG | 0.493496 | 7.4:+12377258 | MS.gene96973:CDS |
| CGGTGTCGATATTGCCTCAC+AGG | 0.505099 | 7.4:+12379216 | MS.gene96973:CDS |
| ATTAAGAGAACTGCTAAGAC+AGG | 0.519875 | 7.4:+12376802 | MS.gene96973:CDS |
| CTCGTCAGCTGATAAGGCTT+AGG | 0.530813 | 7.4:+12377008 | MS.gene96973:CDS |
| AAAGCAAGCCAAAGTTATGC+AGG | 0.535984 | 7.4:+12378089 | MS.gene96973:CDS |
| TGACCTTGAGAAGCGTTTGG+CGG | 0.537730 | 7.4:+12379633 | MS.gene96973:CDS |
| CCAGAAACAATCGGCACAGA+TGG | 0.552247 | 7.4:+12378116 | MS.gene96973:CDS |
| GCAGGAATTCCAGAAACAAT+CGG | 0.554202 | 7.4:+12378107 | MS.gene96973:CDS |
| GCAAAGAATACTGAAAATGT+TGG | 0.554829 | 7.4:+12379350 | MS.gene96973:CDS |
| AGAATACTGAAAATGTTGGC+AGG | 0.560171 | 7.4:+12379354 | MS.gene96973:CDS |
| AGATGTCATAGATGATGCCT+TGG | 0.571244 | 7.4:+12378256 | MS.gene96973:CDS |
| AGTTATCGTCAGCTCCCAAA+GGG | 0.573333 | 7.4:+12379318 | MS.gene96973:intron |
| TTCAGCTTCATCATCATCCA+AGG | 0.587316 | 7.4:-12378273 | None:intergenic |
| GAGCCGCCAAACGCTTCTCA+AGG | 0.592287 | 7.4:-12379636 | None:intergenic |
| CAGTTATCGTCAGCTCCCAA+AGG | 0.599044 | 7.4:+12379317 | MS.gene96973:intron |
| TCATATATATAGGTATTGAG+AGG | 0.599716 | 7.4:+12376636 | MS.gene96973:intron |
| AGAGAATAGATTACCTCTAG+TGG | 0.604125 | 7.4:-12376555 | None:intergenic |
| GGATGATGATGAAGCTGAAG+AGG | 0.605718 | 7.4:+12378277 | MS.gene96973:CDS |
| GGTAGTCGGGCTCAGATGAG+AGG | 0.622685 | 7.4:+12377052 | MS.gene96973:CDS |
| CATATATATAGGTATTGAGA+GGG | 0.628943 | 7.4:+12376637 | MS.gene96973:intron |
| GAAATGACTAACGCCACTAG+AGG | 0.662249 | 7.4:+12376542 | MS.gene96973:CDS |
| AGGCATAGCAACTCACACGC+AGG | 0.676531 | 7.4:+12377072 | MS.gene96973:CDS |
| AACTGCTAAGACAGGAAACG+AGG | 0.681032 | 7.4:+12376810 | MS.gene96973:CDS |
| AAAGCTTATTCCTACCTGTG+AGG | 0.707349 | 7.4:-12379230 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTAATTAATAAAATT+AGG | - | chr7.4:12376611-12376630 | None:intergenic | 0.0% |
| !! | TAAAGTTAGTAATAATAATA+TGG | + | chr7.4:12376741-12376760 | MS.gene96973:intron | 10.0% |
| !! | TTTAATACTATCATATATAT+AGG | + | chr7.4:12376626-12376645 | MS.gene96973:intron | 10.0% |
| !!! | ATTTATAAATTAGTTTAAGA+GGG | - | chr7.4:12378934-12378953 | None:intergenic | 10.0% |
| !!! | TATTTATAAATTAGTTTAAG+AGG | - | chr7.4:12378935-12378954 | None:intergenic | 10.0% |
| !!! | TAGCATTTGATTTTTATTTA+TGG | + | chr7.4:12377710-12377729 | MS.gene96973:intron | 15.0% |
| !! | AAAAAACACAACAAAAACAA+AGG | - | chr7.4:12377116-12377135 | None:intergenic | 20.0% |
| !! | AAAAACACAACAAAAACAAA+GGG | - | chr7.4:12377115-12377134 | None:intergenic | 20.0% |
| !! | ACAAGTTAAAATTTCTTAAG+CGG | + | chr7.4:12379553-12379572 | MS.gene96973:intron | 20.0% |
| !! | GTTAAACAAAACATTGATAT+TGG | + | chr7.4:12377983-12378002 | MS.gene96973:intron | 20.0% |
| !!! | AAACAAAAGTATAGTTACAT+GGG | + | chr7.4:12378829-12378848 | MS.gene96973:intron | 20.0% |
| !!! | AAATGAAAATTCTTTTTTGG+AGG | + | chr7.4:12377636-12377655 | MS.gene96973:intron | 20.0% |
| !!! | AAATTTGATGTTTTATTCTC+AGG | + | chr7.4:12376967-12376986 | MS.gene96973:intron | 20.0% |
| !!! | AACTTTCTTATTGTTTTTAG+AGG | - | chr7.4:12379406-12379425 | None:intergenic | 20.0% |
| !!! | AATTTGATGTTTTATTCTCA+GGG | + | chr7.4:12376968-12376987 | MS.gene96973:intron | 20.0% |
| !!! | GTCCATTTTCATAATATAAA+GGG | + | chr7.4:12377337-12377356 | MS.gene96973:intron | 20.0% |
| !!! | TATCAATGTTTTGTTTAACT+CGG | - | chr7.4:12377982-12378001 | None:intergenic | 20.0% |
| !!! | TGCAAATGAAAATTCTTTTT+TGG | + | chr7.4:12377633-12377652 | MS.gene96973:intron | 20.0% |
| !!! | TGTCCATTTTCATAATATAA+AGG | + | chr7.4:12377336-12377355 | MS.gene96973:intron | 20.0% |
| !!! | TTTTCTAGAATTTTACAAGT+TGG | + | chr7.4:12378165-12378184 | MS.gene96973:intron | 20.0% |
| ! | AATCATTGTTTACACTTCAA+TGG | + | chr7.4:12378200-12378219 | MS.gene96973:intron | 25.0% |
| ! | AATGGTGTAGAAAATATTTG+TGG | - | chr7.4:12378012-12378031 | None:intergenic | 25.0% |
| ! | ATATTGTTCCAAAACTTGAT+TGG | + | chr7.4:12377567-12377586 | MS.gene96973:intron | 25.0% |
| ! | CAATAAGAAAGTTAAGAGAA+AGG | + | chr7.4:12379413-12379432 | MS.gene96973:intron | 25.0% |
| ! | CACCCTTTATATTATGAAAA+TGG | - | chr7.4:12377342-12377361 | None:intergenic | 25.0% |
| ! | GCTAATATCATCTTAATGTA+AGG | - | chr7.4:12379127-12379146 | None:intergenic | 25.0% |
| ! | GTAAATAAACCAATCCAAAT+AGG | - | chr7.4:12378611-12378630 | None:intergenic | 25.0% |
| ! | GTAATAACATCAAAATTCCA+AGG | - | chr7.4:12379599-12379618 | None:intergenic | 25.0% |
| ! | TATTGTTCCAAAACTTGATT+GGG | + | chr7.4:12377568-12377587 | MS.gene96973:intron | 25.0% |
| ! | TCAAATAAGTTAATTCGAAC+AGG | + | chr7.4:12376937-12376956 | MS.gene96973:intron | 25.0% |
| ! | TTAAAATGACCTGTAGTTTA+TGG | + | chr7.4:12378425-12378444 | MS.gene96973:intron | 25.0% |
| ! | TTATCTACTGACATAAACAA+AGG | - | chr7.4:12376915-12376934 | None:intergenic | 25.0% |
| ! | TTATTCACAAAGAGTAAGAT+GGG | + | chr7.4:12379088-12379107 | MS.gene96973:intron | 25.0% |
| ! | TTTATTCACAAAGAGTAAGA+TGG | + | chr7.4:12379087-12379106 | MS.gene96973:intron | 25.0% |
| !! | AAGGGACTTTAGAAATTAAA+AGG | + | chr7.4:12377906-12377925 | MS.gene96973:intron | 25.0% |
| !! | AATTATGCTTTTCTGTTTAC+AGG | + | chr7.4:12378372-12378391 | MS.gene96973:intron | 25.0% |
| !! | CAAACAAAAGTATAGTTACA+TGG | + | chr7.4:12378828-12378847 | MS.gene96973:intron | 25.0% |
| !! | CATGTAACTATACTTTTGTT+TGG | - | chr7.4:12378830-12378849 | None:intergenic | 25.0% |
| !! | CATTTTCATAATATAAAGGG+TGG | + | chr7.4:12377340-12377359 | MS.gene96973:intron | 25.0% |
| !! | TAGAGTTTTCATGAATTTTG+AGG | + | chr7.4:12377670-12377689 | MS.gene96973:intron | 25.0% |
| !! | TATGATATTTGACTTAGCTA+TGG | + | chr7.4:12377186-12377205 | MS.gene96973:intron | 25.0% |
| !! | TGTAATAGCAACATTTTGTT+TGG | + | chr7.4:12377592-12377611 | MS.gene96973:intron | 25.0% |
| !! | TGTTCATTTGCTAAATATTG+TGG | + | chr7.4:12377819-12377838 | MS.gene96973:intron | 25.0% |
| !!! | ATCTGCAAATTTTTAGTCAT+AGG | + | chr7.4:12376846-12376865 | MS.gene96973:intron | 25.0% |
| !!! | ATTTTGATGTTATTACAGCT+CGG | + | chr7.4:12379603-12379622 | MS.gene96973:intron | 25.0% |
| !!! | CAAGCTAATTTGTATTCTTT+TGG | + | chr7.4:12379294-12379313 | MS.gene96973:intron | 25.0% |
| !!! | CATATATATAGGTATTGAGA+GGG | + | chr7.4:12376637-12376656 | MS.gene96973:intron | 25.0% |
| !!! | CTTATTGTTTTTAGAGGATA+TGG | - | chr7.4:12379400-12379419 | None:intergenic | 25.0% |
| !!! | TATGGATTGTTTGTTTTGTT+AGG | + | chr7.4:12376759-12376778 | MS.gene96973:intron | 25.0% |
| !!! | TCATATATATAGGTATTGAG+AGG | + | chr7.4:12376636-12376655 | MS.gene96973:intron | 25.0% |
| AAATTATCTCCACAAGATCA+TGG | - | chr7.4:12378872-12378891 | None:intergenic | 30.0% | |
| AACAATATTAAGGGTTGCTA+TGG | + | chr7.4:12377776-12377795 | MS.gene96973:intron | 30.0% | |
| AACGGTAAAAGACTGAAAAA+TGG | - | chr7.4:12378030-12378049 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr7.4:12378693-12378712 | None:intergenic | 30.0% | |
| ATCTTGTGGAGATAATTTAG+GGG | + | chr7.4:12378874-12378893 | MS.gene96973:intron | 30.0% | |
| ATTGTTCCAAAACTTGATTG+GGG | + | chr7.4:12377569-12377588 | MS.gene96973:intron | 30.0% | |
| CTAATAATCAGTGAAAGCTT+AGG | + | chr7.4:12378897-12378916 | MS.gene96973:intron | 30.0% | |
| GAATCCAACAAATTAGGAAA+CGG | - | chr7.4:12378048-12378067 | None:intergenic | 30.0% | |
| GATCTTGTGGAGATAATTTA+GGG | + | chr7.4:12378873-12378892 | MS.gene96973:intron | 30.0% | |
| GCAAAGAATACTGAAAATGT+TGG | + | chr7.4:12379350-12379369 | MS.gene96973:CDS | 30.0% | |
| GGAAATTGGATCATTACAAT+TGG | + | chr7.4:12376658-12376677 | MS.gene96973:CDS | 30.0% | |
| GGAGCAATGAACAATATTAA+GGG | + | chr7.4:12377767-12377786 | MS.gene96973:intron | 30.0% | |
| TAGTTACAAGGTTTAAGGAA+TGG | + | chr7.4:12379061-12379080 | MS.gene96973:intron | 30.0% | |
| TCACTTAGTTACAAGGTTTA+AGG | + | chr7.4:12379056-12379075 | MS.gene96973:intron | 30.0% | |
| TGATCTTGTGGAGATAATTT+AGG | + | chr7.4:12378872-12378891 | MS.gene96973:intron | 30.0% | |
| TGCAATGAATCCAACAAATT+AGG | - | chr7.4:12378054-12378073 | None:intergenic | 30.0% | |
| TGGAGCAATGAACAATATTA+AGG | + | chr7.4:12377766-12377785 | MS.gene96973:intron | 30.0% | |
| TTGAAGAACTGCTATTATCA+AGG | - | chr7.4:12377955-12377974 | None:intergenic | 30.0% | |
| TTTATTCTTGATTTCCCCAA+GGG | - | chr7.4:12378542-12378561 | None:intergenic | 30.0% | |
| ! | AATTAGTTTAAGAGGGTATG+CGG | - | chr7.4:12378927-12378946 | None:intergenic | 30.0% |
| ! | CCTATTTTGTATCCTAACTT+CGG | + | chr7.4:12378508-12378527 | MS.gene96973:intron | 30.0% |
| ! | TTTACCGTTTCCTAATTTGT+TGG | + | chr7.4:12378041-12378060 | MS.gene96973:intron | 30.0% |
| ! | TTTTATTCTTGATTTCCCCA+AGG | - | chr7.4:12378543-12378562 | None:intergenic | 30.0% |
| ! | TTTTGATGTTATTACAGCTC+GGG | + | chr7.4:12379604-12379623 | MS.gene96973:intron | 30.0% |
| !! | TTTAATTGATTTTGCTGCAG+AGG | + | chr7.4:12376499-12376518 | MS.gene96973:CDS | 30.0% |
| !! | TTTGCAAGTTTTAATGACCT+TGG | + | chr7.4:12379579-12379598 | MS.gene96973:intron | 30.0% |
| AAGAGCTTGTGAGATTGTTT+GGG | + | chr7.4:12378637-12378656 | MS.gene96973:intron | 35.0% | |
| AGAATACTGAAAATGTTGGC+AGG | + | chr7.4:12379354-12379373 | MS.gene96973:CDS | 35.0% | |
| AGAGAATAGATTACCTCTAG+TGG | - | chr7.4:12376558-12376577 | None:intergenic | 35.0% | |
| AGGATATGGAAAGAGTTACA+CGG | - | chr7.4:12379386-12379405 | None:intergenic | 35.0% | |
| ATTAAGAGAACTGCTAAGAC+AGG | + | chr7.4:12376802-12376821 | MS.gene96973:CDS | 35.0% | |
| CAACAGATTGCTAATCTTCA+GGG | + | chr7.4:12377031-12377050 | MS.gene96973:CDS | 35.0% | |
| CAGACTGTCATGATTTCTTA+TGG | + | chr7.4:12379028-12379047 | MS.gene96973:intron | 35.0% | |
| CATGTTAGTCCATAAACTAC+AGG | - | chr7.4:12378437-12378456 | None:intergenic | 35.0% | |
| CCGAAGTTAGGATACAAAAT+AGG | - | chr7.4:12378511-12378530 | None:intergenic | 35.0% | |
| CTACCAAATCATATCCTACT+AGG | + | chr7.4:12378570-12378589 | MS.gene96973:intron | 35.0% | |
| CTACTAGGTGAAGTTAGTTA+AGG | + | chr7.4:12378585-12378604 | MS.gene96973:intron | 35.0% | |
| CTTAACTAACTTCACCTAGT+AGG | - | chr7.4:12378587-12378606 | None:intergenic | 35.0% | |
| CTTGTAATTCGCGAAGAATT+TGG | + | chr7.4:12379511-12379530 | MS.gene96973:intron | 35.0% | |
| GAAGTTAGTTAAGGCCTATT+TGG | + | chr7.4:12378594-12378613 | MS.gene96973:intron | 35.0% | |
| GTAAGATGGGAATGAATTCA+AGG | + | chr7.4:12379101-12379120 | MS.gene96973:intron | 35.0% | |
| GTCTTCAGAAGGAAACATAA+TGG | - | chr7.4:12378988-12379007 | None:intergenic | 35.0% | |
| TAAGAGCTTGTGAGATTGTT+TGG | + | chr7.4:12378636-12378655 | MS.gene96973:intron | 35.0% | |
| TAGTTAAGGCCTATTTGGAT+TGG | + | chr7.4:12378599-12378618 | MS.gene96973:intron | 35.0% | |
| TCACCTAGTAGGATATGATT+TGG | - | chr7.4:12378576-12378595 | None:intergenic | 35.0% | |
| TCTGATTTCTTAAGCTATCC+TGG | - | chr7.4:12378728-12378747 | None:intergenic | 35.0% | |
| TGAAGTTCAGAAGTAGTTTC+AGG | - | chr7.4:12379010-12379029 | None:intergenic | 35.0% | |
| ! | ATATCATCTGACAGTGCTTT+TGG | + | chr7.4:12379270-12379289 | MS.gene96973:intron | 35.0% |
| ! | ATTACACCCCAATCAAGTTT+TGG | - | chr7.4:12377578-12377597 | None:intergenic | 35.0% |
| ! | ATTAGTTTAAGAGGGTATGC+GGG | - | chr7.4:12378926-12378945 | None:intergenic | 35.0% |
| ! | CTTATTTCTTAAAGCTCTCC+AGG | + | chr7.4:12378707-12378726 | MS.gene96973:intron | 35.0% |
| !! | ATAGGTATTGAGAGGGAAAT+TGG | + | chr7.4:12376644-12376663 | MS.gene96973:intron | 35.0% |
| !! | TGCATAAGCTATTTCTGTGA+CGG | - | chr7.4:12378760-12378779 | None:intergenic | 35.0% |
| !! | TTGTTGACTTGTGTTTGAGA+TGG | + | chr7.4:12377154-12377173 | MS.gene96973:intron | 35.0% |
| !!! | CTTTTTTGGAGGTGATATAG+AGG | + | chr7.4:12377647-12377666 | MS.gene96973:intron | 35.0% |
| AAAGCAAGCCAAAGTTATGC+AGG | + | chr7.4:12378089-12378108 | MS.gene96973:CDS | 40.0% | |
| AAAGCTTATTCCTACCTGTG+AGG | - | chr7.4:12379233-12379252 | None:intergenic | 40.0% | |
| ACCTTGTGTTACAATCCTTG+AGG | + | chr7.4:12378460-12378479 | MS.gene96973:intron | 40.0% | |
| AGAACTGCTATTATCAAGGC+TGG | - | chr7.4:12377951-12377970 | None:intergenic | 40.0% | |
| AGATGTCATAGATGATGCCT+TGG | + | chr7.4:12378256-12378275 | MS.gene96973:CDS | 40.0% | |
| AGTTACATGGGTCATGACAT+TGG | + | chr7.4:12378841-12378860 | MS.gene96973:intron | 40.0% | |
| ATCAAGCACCTGTCAAGAAA+AGG | - | chr7.4:12379191-12379210 | None:intergenic | 40.0% | |
| CAAAGGGTTCAAGTGAACAA+TGG | - | chr7.4:12377099-12377118 | None:intergenic | 40.0% | |
| CCTTGTGTTACAATCCTTGA+GGG | + | chr7.4:12378461-12378480 | MS.gene96973:intron | 40.0% | |
| CTGGAATTCCTGCATAACTT+TGG | - | chr7.4:12378100-12378119 | None:intergenic | 40.0% | |
| GATTTGAATCTGTGACATCC+AGG | + | chr7.4:12377485-12377504 | MS.gene96973:intron | 40.0% | |
| GCAACAGATTGCTAATCTTC+AGG | + | chr7.4:12377030-12377049 | MS.gene96973:CDS | 40.0% | |
| GCAGGAATTCCAGAAACAAT+CGG | + | chr7.4:12378107-12378126 | MS.gene96973:CDS | 40.0% | |
| GGCAATGTCAGCTATGAATA+AGG | + | chr7.4:12377279-12377298 | MS.gene96973:CDS | 40.0% | |
| GTTACATGGGTCATGACATT+GGG | + | chr7.4:12378842-12378861 | MS.gene96973:intron | 40.0% | |
| GTTGGATTCATTGCAGCAAA+TGG | + | chr7.4:12378059-12378078 | MS.gene96973:intron | 40.0% | |
| TACACCAGGTTTCCAAGAAA+GGG | + | chr7.4:12377403-12377422 | MS.gene96973:intron | 40.0% | |
| TCAAGCACCTGTCAAGAAAA+GGG | - | chr7.4:12379190-12379209 | None:intergenic | 40.0% | |
| TCATGAACTAACATGAGAGC+AGG | - | chr7.4:12377546-12377565 | None:intergenic | 40.0% | |
| TGACAGGTGCTTGATGAAAT+CGG | + | chr7.4:12379196-12379215 | MS.gene96973:intron | 40.0% | |
| TTCAGCTTCATCATCATCCA+AGG | - | chr7.4:12378276-12378295 | None:intergenic | 40.0% | |
| TTGCTAATCTTCAGGGTAGT+CGG | + | chr7.4:12377038-12377057 | MS.gene96973:CDS | 40.0% | |
| TTTGTGCGAGTTTGATGGAA+TGG | + | chr7.4:12377746-12377765 | MS.gene96973:intron | 40.0% | |
| ! | ACATTATCAAGAGAAGCGTG+TGG | + | chr7.4:12378954-12378973 | MS.gene96973:intron | 40.0% |
| ! | AGTAGTTTCAGGTCTTCAGA+AGG | - | chr7.4:12378999-12379018 | None:intergenic | 40.0% |
| ! | GGCTTTGTCACTTAGTTACA+AGG | + | chr7.4:12379049-12379068 | MS.gene96973:intron | 40.0% |
| ! | TCACTTACCCTTTTCTTGAC+AGG | + | chr7.4:12379180-12379199 | MS.gene96973:intron | 40.0% |
| !! | ATAACTTTGGCTTGCTTTGC+TGG | - | chr7.4:12378087-12378106 | None:intergenic | 40.0% |
| !! | CAAGCTGAGAAGTTGTTTCT+AGG | + | chr7.4:12377463-12377482 | MS.gene96973:intron | 40.0% |
| AACTGCTAAGACAGGAAACG+AGG | + | chr7.4:12376810-12376829 | MS.gene96973:CDS | 45.0% | |
| ACACCAGGTTTCCAAGAAAG+GGG | + | chr7.4:12377404-12377423 | MS.gene96973:intron | 45.0% | |
| AGTTATCGTCAGCTCCCAAA+GGG | + | chr7.4:12379318-12379337 | MS.gene96973:intron | 45.0% | |
| CCCTCAAGGATTGTAACACA+AGG | - | chr7.4:12378464-12378483 | None:intergenic | 45.0% | |
| CTGGGGAGGGTAAATCTATA+TGG | + | chr7.4:12377429-12377448 | MS.gene96973:intron | 45.0% | |
| GAAATGACTAACGCCACTAG+AGG | + | chr7.4:12376542-12376561 | MS.gene96973:CDS | 45.0% | |
| GCAAGTTTGTGCGAGTTTGA+TGG | + | chr7.4:12377741-12377760 | MS.gene96973:intron | 45.0% | |
| GCACATTCTTCTGTTGCTGT+TGG | + | chr7.4:12377238-12377257 | MS.gene96973:CDS | 45.0% | |
| GTACACCAGGTTTCCAAGAA+AGG | + | chr7.4:12377402-12377421 | MS.gene96973:intron | 45.0% | |
| TACTAGCTCGTCAGCTGATA+AGG | + | chr7.4:12377002-12377021 | MS.gene96973:CDS | 45.0% | |
| TGCTAATCTTCAGGGTAGTC+GGG | + | chr7.4:12377039-12377058 | MS.gene96973:CDS | 45.0% | |
| TTGGGCTATCCATGATCTTG+TGG | + | chr7.4:12378860-12378879 | MS.gene96973:intron | 45.0% | |
| TTTGCTGCGATTCTCCCTTT+GGG | - | chr7.4:12379335-12379354 | None:intergenic | 45.0% | |
| ! | CTAAGCATTGCTAACCCTCA+AGG | - | chr7.4:12378478-12378497 | None:intergenic | 45.0% |
| ! | GGATGATGATGAAGCTGAAG+AGG | + | chr7.4:12378277-12378296 | MS.gene96973:CDS | 45.0% |
| ! | TCTGTTGCTGTTGGCATGAA+AGG | + | chr7.4:12377247-12377266 | MS.gene96973:CDS | 45.0% |
| !! | AAAATATTATAATAAAAGAA+AGG | - | chr7.4:12378341-12378360 | None:intergenic | 5.0% |
| !! | GTTAAATTAAATATATTAAA+AGG | - | chr7.4:12376707-12376726 | None:intergenic | 5.0% |
| AAAGGGTGGTCTAGTACACC+AGG | + | chr7.4:12377389-12377408 | MS.gene96973:intron | 50.0% | |
| AACTTCGGCAGTAACACCCT+TGG | + | chr7.4:12378523-12378542 | MS.gene96973:intron | 50.0% | |
| ACACACACACACACACGGAA+AGG | + | chr7.4:12377887-12377906 | MS.gene96973:intron | 50.0% | |
| ACTAACATGAGAGCAGGCCT+TGG | - | chr7.4:12377540-12377559 | None:intergenic | 50.0% | |
| ACTTCGGCAGTAACACCCTT+GGG | + | chr7.4:12378524-12378543 | MS.gene96973:intron | 50.0% | |
| CACACACACACACACACACA+CGG | + | chr7.4:12377880-12377899 | MS.gene96973:intron | 50.0% | |
| CACACACACACACACGGAAA+GGG | + | chr7.4:12377888-12377907 | MS.gene96973:intron | 50.0% | |
| CACCAGGTTTCCAAGAAAGG+GGG | + | chr7.4:12377405-12377424 | MS.gene96973:intron | 50.0% | |
| CAGTTATCGTCAGCTCCCAA+AGG | + | chr7.4:12379317-12379336 | MS.gene96973:intron | 50.0% | |
| CCAGAAACAATCGGCACAGA+TGG | + | chr7.4:12378116-12378135 | MS.gene96973:CDS | 50.0% | |
| CTCGTCAGCTGATAAGGCTT+AGG | + | chr7.4:12377008-12377027 | MS.gene96973:CDS | 50.0% | |
| CTTTGCTGCGATTCTCCCTT+TGG | - | chr7.4:12379336-12379355 | None:intergenic | 50.0% | |
| GTCGATATTGCCTCACAGGT+AGG | + | chr7.4:12379220-12379239 | MS.gene96973:intron | 50.0% | |
| GTTTCCAAGAAAGGGGGTCT+GGG | + | chr7.4:12377411-12377430 | MS.gene96973:intron | 50.0% | |
| TGTGACATCCAGGTCACACA+AGG | + | chr7.4:12377495-12377514 | MS.gene96973:intron | 50.0% | |
| TGTGTGTGCATGTGACAGGA+GGG | - | chr7.4:12377868-12377887 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGCATGTGAC+AGG | - | chr7.4:12377872-12377891 | None:intergenic | 50.0% | |
| TTTCCAAGAAAGGGGGTCTG+GGG | + | chr7.4:12377412-12377431 | MS.gene96973:intron | 50.0% | |
| ! | GGTTGCTTGTCATTTCGTGC+AGG | + | chr7.4:12377207-12377226 | MS.gene96973:intron | 50.0% |
| !! | AGGGTGTTACTGCCGAAGTT+AGG | - | chr7.4:12378523-12378542 | None:intergenic | 50.0% |
| !! | CCATCTGTGCCGATTGTTTC+TGG | - | chr7.4:12378119-12378138 | None:intergenic | 50.0% |
| !! | CGATGACCTTGAGAAGCGTT+TGG | + | chr7.4:12379630-12379649 | MS.gene96973:CDS | 50.0% |
| !! | TGACCTTGAGAAGCGTTTGG+CGG | + | chr7.4:12379633-12379652 | MS.gene96973:CDS | 50.0% |
| !! | TGGCATGAAAGGCGCTACTA+AGG | + | chr7.4:12377258-12377277 | MS.gene96973:CDS | 50.0% |
| AGGCATAGCAACTCACACGC+AGG | + | chr7.4:12377072-12377091 | MS.gene96973:CDS | 55.0% | |
| CTTCGGCAGTAACACCCTTG+GGG | + | chr7.4:12378525-12378544 | MS.gene96973:intron | 55.0% | |
| GACCCCCTTTCTTGGAAACC+TGG | - | chr7.4:12377410-12377429 | None:intergenic | 55.0% | |
| GCAACCTTGCGATTGTGCCA+AGG | + | chr7.4:12377520-12377539 | MS.gene96973:intron | 55.0% | |
| GGTTTCCAAGAAAGGGGGTC+TGG | + | chr7.4:12377410-12377429 | MS.gene96973:intron | 55.0% | |
| GTGTGTGTGCATGTGACAGG+AGG | - | chr7.4:12377869-12377888 | None:intergenic | 55.0% | |
| !! | CGGTGTCGATATTGCCTCAC+AGG | + | chr7.4:12379216-12379235 | MS.gene96973:CDS | 55.0% |
| CAAGAAAGGGGGTCTGGGGA+GGG | + | chr7.4:12377416-12377435 | MS.gene96973:intron | 60.0% | |
| CAGGCCTTGGCACAATCGCA+AGG | - | chr7.4:12377527-12377546 | None:intergenic | 60.0% | |
| GAGCCGCCAAACGCTTCTCA+AGG | - | chr7.4:12379639-12379658 | None:intergenic | 60.0% | |
| GGTAGTCGGGCTCAGATGAG+AGG | + | chr7.4:12377052-12377071 | MS.gene96973:CDS | 60.0% | |
| GGTTGCTGCCTTGTGTGACC+TGG | - | chr7.4:12377506-12377525 | None:intergenic | 60.0% | |
| CCAAGAAAGGGGGTCTGGGG+AGG | + | chr7.4:12377415-12377434 | MS.gene96973:intron | 65.0% | |
| CCTCCCCAGACCCCCTTTCT+TGG | - | chr7.4:12377418-12377437 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 12376482 | 12379672 | 12376482 | ID=MS.gene96973 |
| chr7.4 | mRNA | 12376482 | 12379672 | 12376482 | ID=MS.gene96973.t1;Parent=MS.gene96973 |
| chr7.4 | exon | 12376482 | 12376563 | 12376482 | ID=MS.gene96973.t1.exon1;Parent=MS.gene96973.t1 |
| chr7.4 | CDS | 12376482 | 12376563 | 12376482 | ID=cds.MS.gene96973.t1;Parent=MS.gene96973.t1 |
| chr7.4 | exon | 12376648 | 12376682 | 12376648 | ID=MS.gene96973.t1.exon2;Parent=MS.gene96973.t1 |
| chr7.4 | CDS | 12376648 | 12376682 | 12376648 | ID=cds.MS.gene96973.t1;Parent=MS.gene96973.t1 |
| chr7.4 | exon | 12376781 | 12376831 | 12376781 | ID=MS.gene96973.t1.exon3;Parent=MS.gene96973.t1 |
| chr7.4 | CDS | 12376781 | 12376831 | 12376781 | ID=cds.MS.gene96973.t1;Parent=MS.gene96973.t1 |
| chr7.4 | exon | 12376989 | 12377093 | 12376989 | ID=MS.gene96973.t1.exon4;Parent=MS.gene96973.t1 |
| chr7.4 | CDS | 12376989 | 12377093 | 12376989 | ID=cds.MS.gene96973.t1;Parent=MS.gene96973.t1 |
| chr7.4 | exon | 12377229 | 12377300 | 12377229 | ID=MS.gene96973.t1.exon5;Parent=MS.gene96973.t1 |
| chr7.4 | CDS | 12377229 | 12377300 | 12377229 | ID=cds.MS.gene96973.t1;Parent=MS.gene96973.t1 |
| chr7.4 | exon | 12378075 | 12378146 | 12378075 | ID=MS.gene96973.t1.exon6;Parent=MS.gene96973.t1 |
| chr7.4 | CDS | 12378075 | 12378146 | 12378075 | ID=cds.MS.gene96973.t1;Parent=MS.gene96973.t1 |
| chr7.4 | exon | 12378242 | 12378322 | 12378242 | ID=MS.gene96973.t1.exon7;Parent=MS.gene96973.t1 |
| chr7.4 | CDS | 12378242 | 12378322 | 12378242 | ID=cds.MS.gene96973.t1;Parent=MS.gene96973.t1 |
| chr7.4 | exon | 12379202 | 12379237 | 12379202 | ID=MS.gene96973.t1.exon8;Parent=MS.gene96973.t1 |
| chr7.4 | CDS | 12379202 | 12379237 | 12379202 | ID=cds.MS.gene96973.t1;Parent=MS.gene96973.t1 |
| chr7.4 | exon | 12379320 | 12379375 | 12379320 | ID=MS.gene96973.t1.exon9;Parent=MS.gene96973.t1 |
| chr7.4 | CDS | 12379320 | 12379375 | 12379320 | ID=cds.MS.gene96973.t1;Parent=MS.gene96973.t1 |
| chr7.4 | exon | 12379621 | 12379672 | 12379621 | ID=MS.gene96973.t1.exon10;Parent=MS.gene96973.t1 |
| chr7.4 | CDS | 12379621 | 12379672 | 12379621 | ID=cds.MS.gene96973.t1;Parent=MS.gene96973.t1 |
| Gene Sequence |
| Protein sequence |
