Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23464.t1 | XP_013449918.1 | 99 | 201 | 2 | 0 | 13 | 213 | 12 | 212 | 2.70E-68 | 268.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23464.t1 | Q941D5 | 88.1 | 201 | 24 | 0 | 11 | 211 | 10 | 210 | 1.5e-59 | 230.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23464.t1 | A0A072U3L4 | 99.0 | 201 | 2 | 0 | 13 | 213 | 12 | 212 | 2.0e-68 | 268.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene23464 | 0.825961 | 3.52E-54 | -1.69E-46 |
| MS.gene04917 | MS.gene23464 | 0.821039 | 4.99E-53 | -1.69E-46 |
| MS.gene049283 | MS.gene23464 | 0.829885 | 4.01E-55 | -1.69E-46 |
| MS.gene049861 | MS.gene23464 | 0.812142 | 4.92E-51 | -1.69E-46 |
| MS.gene04991 | MS.gene23464 | -0.826386 | 2.79E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene23464 | 0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene04998 | MS.gene23464 | 0.806367 | 8.51E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene23464 | 0.819203 | 1.31E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene23464 | 0.821976 | 3.03E-53 | -1.69E-46 |
| MS.gene051122 | MS.gene23464 | 0.830735 | 2.48E-55 | -1.69E-46 |
| MS.gene051184 | MS.gene23464 | 0.869114 | 3.94E-66 | -1.69E-46 |
| MS.gene051275 | MS.gene23464 | 0.815872 | 7.40E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene23464 | 0.83487 | 2.33E-56 | -1.69E-46 |
| MS.gene051655 | MS.gene23464 | 0.825626 | 4.23E-54 | -1.69E-46 |
| MS.gene051831 | MS.gene23464 | 0.835643 | 1.49E-56 | -1.69E-46 |
| MS.gene051987 | MS.gene23464 | 0.838902 | 2.18E-57 | -1.69E-46 |
| MS.gene052434 | MS.gene23464 | 0.800869 | 1.18E-48 | -1.69E-46 |
| MS.gene052954 | MS.gene23464 | 0.81046 | 1.14E-50 | -1.69E-46 |
| MS.gene053295 | MS.gene23464 | 0.807781 | 4.27E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene23464 | 0.858695 | 6.91E-63 | -1.69E-46 |
| MS.gene053340 | MS.gene23464 | 0.804391 | 2.21E-49 | -1.69E-46 |
| MS.gene05344 | MS.gene23464 | -0.821579 | 3.75E-53 | -1.69E-46 |
| MS.gene053726 | MS.gene23464 | 0.853962 | 1.69E-61 | -1.69E-46 |
| MS.gene053963 | MS.gene23464 | 0.846611 | 1.95E-59 | -1.69E-46 |
| MS.gene054222 | MS.gene23464 | 0.812831 | 3.48E-51 | -1.69E-46 |
| MS.gene05439 | MS.gene23464 | 0.826282 | 2.95E-54 | -1.69E-46 |
| MS.gene054479 | MS.gene23464 | 0.811495 | 6.80E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene23464 | 0.833167 | 6.23E-56 | -1.69E-46 |
| MS.gene054893 | MS.gene23464 | 0.838812 | 2.30E-57 | -1.69E-46 |
| MS.gene055226 | MS.gene23464 | 0.810396 | 1.18E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene23464 | 0.822485 | 2.31E-53 | -1.69E-46 |
| MS.gene055864 | MS.gene23464 | 0.800289 | 1.55E-48 | -1.69E-46 |
| MS.gene056849 | MS.gene23464 | 0.830906 | 2.26E-55 | -1.69E-46 |
| MS.gene056975 | MS.gene23464 | 0.821837 | 3.27E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene23464 | 0.801932 | 7.13E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene23464 | 0.803591 | 3.24E-49 | -1.69E-46 |
| MS.gene057155 | MS.gene23464 | 0.812002 | 5.28E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene23464 | 0.820919 | 5.32E-53 | -1.69E-46 |
| MS.gene057622 | MS.gene23464 | 0.818313 | 2.09E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene23464 | 0.84145 | 4.72E-58 | -1.69E-46 |
| MS.gene058429 | MS.gene23464 | 0.858585 | 7.45E-63 | -1.69E-46 |
| MS.gene058592 | MS.gene23464 | 0.809244 | 2.08E-50 | -1.69E-46 |
| MS.gene059360 | MS.gene23464 | 0.80182 | 7.52E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene23464 | 0.800332 | 1.51E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene23464 | -0.821649 | 3.61E-53 | -1.69E-46 |
| MS.gene060012 | MS.gene23464 | 0.805894 | 1.07E-49 | -1.69E-46 |
| MS.gene06010 | MS.gene23464 | 0.803857 | 2.85E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene23464 | 0.81509 | 1.10E-51 | -1.69E-46 |
| MS.gene060259 | MS.gene23464 | 0.822966 | 1.79E-53 | -1.69E-46 |
| MS.gene060297 | MS.gene23464 | 0.80039 | 1.47E-48 | -1.69E-46 |
| MS.gene060412 | MS.gene23464 | 0.811204 | 7.87E-51 | -1.69E-46 |
| MS.gene060840 | MS.gene23464 | 0.800159 | 1.64E-48 | -1.69E-46 |
| MS.gene060850 | MS.gene23464 | 0.829367 | 5.36E-55 | -1.69E-46 |
| MS.gene060851 | MS.gene23464 | 0.844281 | 8.33E-59 | -1.69E-46 |
| MS.gene060852 | MS.gene23464 | 0.844004 | 9.89E-59 | -1.69E-46 |
| MS.gene060869 | MS.gene23464 | 0.810269 | 1.25E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene23464 | 0.816648 | 4.96E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23464 | MS.gene09111 | PPI |
| MS.gene23464 | MS.gene007726 | PPI |
| MS.gene23464 | MS.gene75244 | PPI |
| MS.gene051184 | MS.gene23464 | PPI |
| MS.gene23464 | MS.gene025196 | PPI |
| MS.gene23464 | MS.gene75911 | PPI |
| MS.gene033909 | MS.gene23464 | PPI |
| MS.gene23464 | MS.gene98009 | PPI |
| MS.gene23464 | MS.gene09166 | PPI |
| MS.gene23464 | MS.gene049786 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23464.t1 | MTR_7g097170 | 98.507 | 201 | 3 | 0 | 13 | 213 | 12 | 212 | 1.66e-143 | 399 |
| MS.gene23464.t1 | MTR_1g069715 | 82.266 | 203 | 36 | 0 | 11 | 213 | 475 | 677 | 5.42e-118 | 350 |
| MS.gene23464.t1 | MTR_2g047875 | 78.049 | 205 | 41 | 1 | 11 | 211 | 10 | 214 | 7.82e-107 | 306 |
| MS.gene23464.t1 | MTR_2g041190 | 43.891 | 221 | 114 | 2 | 1 | 211 | 1 | 221 | 2.99e-43 | 145 |
| MS.gene23464.t1 | MTR_8g019700 | 48.603 | 179 | 92 | 0 | 1 | 179 | 1 | 179 | 1.28e-41 | 140 |
| MS.gene23464.t1 | MTR_4g057565 | 32.768 | 177 | 109 | 2 | 11 | 182 | 14 | 185 | 1.43e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23464.t1 | AT1G03950 | 86.070 | 201 | 28 | 0 | 11 | 211 | 10 | 210 | 2.51e-124 | 350 |
| MS.gene23464.t1 | AT5G44560 | 73.460 | 211 | 46 | 1 | 11 | 211 | 10 | 220 | 1.65e-106 | 305 |
| MS.gene23464.t1 | AT5G44560 | 73.500 | 200 | 43 | 1 | 22 | 211 | 1 | 200 | 2.36e-100 | 289 |
| MS.gene23464.t1 | AT5G44560 | 77.515 | 169 | 38 | 0 | 11 | 179 | 10 | 178 | 7.46e-93 | 270 |
| MS.gene23464.t1 | AT5G44560 | 78.295 | 129 | 28 | 0 | 11 | 139 | 10 | 138 | 1.50e-69 | 209 |
| MS.gene23464.t1 | AT2G06530 | 48.113 | 212 | 99 | 4 | 11 | 211 | 12 | 223 | 2.24e-46 | 153 |
| MS.gene23464.t1 | AT2G06530 | 46.766 | 201 | 96 | 4 | 22 | 211 | 2 | 202 | 1.40e-40 | 137 |
| MS.gene23464.t1 | AT5G22950 | 29.864 | 221 | 131 | 4 | 11 | 212 | 14 | 229 | 9.14e-16 | 73.6 |
Find 42 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTGTGCCGATTGTTTC+TGG | 0.092577 | 7.3:-14180581 | None:intergenic |
| ATAACTTTGGCTTGCTTTGC+TGG | 0.189100 | 7.3:-14180549 | None:intergenic |
| GCAACAGATTGCTAATCTTC+AGG | 0.286548 | 7.3:+14179542 | MS.gene23464:CDS |
| CTTTGCTGCGATTCTCCCTT+TGG | 0.289266 | 7.3:-14181803 | None:intergenic |
| ATAGGTATTGAGAGGGAAAT+TGG | 0.295401 | 7.3:+14179156 | MS.gene23464:intron |
| GGCAATGTCAGCTATGAATA+AGG | 0.369472 | 7.3:+14179780 | MS.gene23464:CDS |
| TTTGCTGCGATTCTCCCTTT+GGG | 0.375553 | 7.3:-14181802 | None:intergenic |
| TACTAGCTCGTCAGCTGATA+AGG | 0.390691 | 7.3:+14179514 | MS.gene23464:CDS |
| CTGGAATTCCTGCATAACTT+TGG | 0.413362 | 7.3:-14180562 | None:intergenic |
| GGAAATTGGATCATTACAAT+TGG | 0.414552 | 7.3:+14179170 | MS.gene23464:CDS |
| TGCTAATCTTCAGGGTAGTC+GGG | 0.416103 | 7.3:+14179551 | MS.gene23464:CDS |
| TGATGACCTTGAGAAGCGTT+TGG | 0.421971 | 7.3:+14182062 | MS.gene23464:CDS |
| GCACATTCTTCTGTTGCTGT+TGG | 0.431120 | 7.3:+14179739 | MS.gene23464:CDS |
| TCTGTTGCTGTTGGCATGAA+AGG | 0.439539 | 7.3:+14179748 | MS.gene23464:CDS |
| CAACAGATTGCTAATCTTCA+GGG | 0.455803 | 7.3:+14179543 | MS.gene23464:CDS |
| TTGCTAATCTTCAGGGTAGT+CGG | 0.468100 | 7.3:+14179550 | MS.gene23464:CDS |
| TGACAGGTGCTTGATGAAAT+CGG | 0.480841 | 7.3:+14181655 | MS.gene23464:intron |
| TGGCATGAAAGGCGCTACTA+AGG | 0.493496 | 7.3:+14179759 | MS.gene23464:CDS |
| CTCTCACGAAGAGCCTCTGC+AGG | 0.503781 | 7.3:-14179017 | None:intergenic |
| CGGTGTCGATATTGCCTCAC+AGG | 0.505099 | 7.3:+14181675 | MS.gene23464:CDS |
| ATTAAGAGAACTGCTAAGAC+AGG | 0.519875 | 7.3:+14179314 | MS.gene23464:CDS |
| CTCGTCAGCTGATAAGGCTT+AGG | 0.530813 | 7.3:+14179520 | MS.gene23464:CDS |
| AAAGCAAGCCAAAGTTATGC+AGG | 0.535984 | 7.3:+14180554 | MS.gene23464:CDS |
| TGACCTTGAGAAGCGTTTGG+CGG | 0.541826 | 7.3:+14182065 | MS.gene23464:CDS |
| AGTTATCTTCAGCTCCCAAA+GGG | 0.551907 | 7.3:+14181788 | MS.gene23464:intron |
| CCAGAAACAATCGGCACAGA+TGG | 0.552247 | 7.3:+14180581 | MS.gene23464:CDS |
| GCAGGAATTCCAGAAACAAT+CGG | 0.554202 | 7.3:+14180572 | MS.gene23464:CDS |
| GCAAAGAATACTGAAAATGT+TGG | 0.554829 | 7.3:+14181820 | MS.gene23464:CDS |
| AGAATACTGAAAATGTTGGC+AGG | 0.560171 | 7.3:+14181824 | MS.gene23464:CDS |
| AGATGTCATAGATGATGCCT+TGG | 0.571244 | 7.3:+14180719 | MS.gene23464:CDS |
| CAGTTATCTTCAGCTCCCAA+AGG | 0.578514 | 7.3:+14181787 | MS.gene23464:intron |
| TTCAGCTTCATCATCATCCA+AGG | 0.587316 | 7.3:-14180736 | None:intergenic |
| GAGCCGCCAAACGCTTCTCA+AGG | 0.592287 | 7.3:-14182068 | None:intergenic |
| TCATATATATAGGTATTGAG+AGG | 0.599716 | 7.3:+14179148 | MS.gene23464:intron |
| AGAGAATAGATTACCTCTAG+TGG | 0.604125 | 7.3:-14179060 | None:intergenic |
| GGATGATGATGAAGCTGAAG+AGG | 0.605718 | 7.3:+14180740 | MS.gene23464:CDS |
| GGTAGTCGGGCTCAGATGAG+AGG | 0.622685 | 7.3:+14179564 | MS.gene23464:CDS |
| CATATATATAGGTATTGAGA+GGG | 0.628943 | 7.3:+14179149 | MS.gene23464:intron |
| GAAATGACTAACGCCACTAG+AGG | 0.662249 | 7.3:+14179047 | MS.gene23464:CDS |
| AGGCATAGCAACTCACACGC+AGG | 0.676531 | 7.3:+14179584 | MS.gene23464:CDS |
| AACTGCTAAGACAGGAAACG+AGG | 0.681032 | 7.3:+14179322 | MS.gene23464:CDS |
| AAAGCTTATTCCTACCTGTG+AGG | 0.707349 | 7.3:-14181689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATATTATAATAAA+AGG | - | chr7.3:14180804-14180823 | None:intergenic | 0.0% |
| !! | ATTAATTAATTAATAAAATT+AGG | - | chr7.3:14179116-14179135 | None:intergenic | 0.0% |
| !! | ATTAATACTATCATATATAT+AGG | + | chr7.3:14179138-14179157 | MS.gene23464:intron | 10.0% |
| !! | TAAAGTTAGTAATAATAATA+TGG | + | chr7.3:14179253-14179272 | MS.gene23464:intron | 10.0% |
| !!! | ATTTATAAATTAGTTTAAGA+GGG | - | chr7.3:14181393-14181412 | None:intergenic | 10.0% |
| !!! | TATTTATAAATTAGTTTAAG+AGG | - | chr7.3:14181394-14181413 | None:intergenic | 10.0% |
| !!! | TAGCATTTGATTTTTATTTA+TGG | + | chr7.3:14180177-14180196 | MS.gene23464:intron | 15.0% |
| !! | ACAAGTTAAAATTTCTTAAG+CGG | + | chr7.3:14181985-14182004 | MS.gene23464:intron | 20.0% |
| !! | GTTAAACAAAACATTGATAT+TGG | + | chr7.3:14180448-14180467 | MS.gene23464:intron | 20.0% |
| !!! | AAACAAAAGTATAGTTACAT+GGG | + | chr7.3:14181288-14181307 | MS.gene23464:intron | 20.0% |
| !!! | AAATGAAAATTCTTTTTTGG+AGG | + | chr7.3:14180103-14180122 | MS.gene23464:intron | 20.0% |
| !!! | AAATTTGATGTTTTATTCTC+AGG | + | chr7.3:14179479-14179498 | MS.gene23464:intron | 20.0% |
| !!! | AACTTTCTTATTGTTTTTAG+AGG | - | chr7.3:14181876-14181895 | None:intergenic | 20.0% |
| !!! | AATTTGATGTTTTATTCTCA+GGG | + | chr7.3:14179480-14179499 | MS.gene23464:intron | 20.0% |
| !!! | GTATTTTATTTGTACTCTTT+TGG | + | chr7.3:14181764-14181783 | MS.gene23464:intron | 20.0% |
| !!! | GTCCATTTTCATAATATAAA+GGG | + | chr7.3:14179839-14179858 | MS.gene23464:intron | 20.0% |
| !!! | TATCAATGTTTTGTTTAACT+CGG | - | chr7.3:14180447-14180466 | None:intergenic | 20.0% |
| !!! | TGCAAATGAAAATTCTTTTT+TGG | + | chr7.3:14180100-14180119 | MS.gene23464:intron | 20.0% |
| !!! | TGTCCATTTTCATAATATAA+AGG | + | chr7.3:14179838-14179857 | MS.gene23464:intron | 20.0% |
| !!! | TTTTCTAGAATTTTACAAGT+TGG | + | chr7.3:14180628-14180647 | MS.gene23464:intron | 20.0% |
| ! | AAAGAACACAACAAAAACAA+AGG | - | chr7.3:14179628-14179647 | None:intergenic | 25.0% |
| ! | AAGAACACAACAAAAACAAA+GGG | - | chr7.3:14179627-14179646 | None:intergenic | 25.0% |
| ! | AATCATTGTTTACACTTCAA+TGG | + | chr7.3:14180663-14180682 | MS.gene23464:intron | 25.0% |
| ! | AATGGTGTAGAAAATATTTG+TGG | - | chr7.3:14180477-14180496 | None:intergenic | 25.0% |
| ! | ATATTGTTCCAAAACTTGAT+TGG | + | chr7.3:14180034-14180053 | MS.gene23464:intron | 25.0% |
| ! | CAATAAGAAAGTTAAGAGAA+AGG | + | chr7.3:14181883-14181902 | MS.gene23464:intron | 25.0% |
| ! | CACCCTTTATATTATGAAAA+TGG | - | chr7.3:14179844-14179863 | None:intergenic | 25.0% |
| ! | CTAATAATCAGTGAAAACTT+AGG | + | chr7.3:14181356-14181375 | MS.gene23464:intron | 25.0% |
| ! | GCTAATATCATCTTAATGTA+AGG | - | chr7.3:14181586-14181605 | None:intergenic | 25.0% |
| ! | GTAAATAAACCAATCCAAAT+AGG | - | chr7.3:14181070-14181089 | None:intergenic | 25.0% |
| ! | GTAATAACATCAAAATTCCA+AGG | - | chr7.3:14182031-14182050 | None:intergenic | 25.0% |
| ! | TAGTTACAAGGTTTAAGAAA+TGG | + | chr7.3:14181520-14181539 | MS.gene23464:intron | 25.0% |
| ! | TATTGTTCCAAAACTTGATT+GGG | + | chr7.3:14180035-14180054 | MS.gene23464:intron | 25.0% |
| ! | TCAAATAAGTTAATTCGAAC+AGG | + | chr7.3:14179449-14179468 | MS.gene23464:intron | 25.0% |
| ! | TTAAAATGACCTGTAGTTTA+TGG | + | chr7.3:14180884-14180903 | MS.gene23464:intron | 25.0% |
| ! | TTATCTACTGACATAAACAA+AGG | - | chr7.3:14179427-14179446 | None:intergenic | 25.0% |
| ! | TTATTCACAAAGAGTAAGAT+GGG | + | chr7.3:14181547-14181566 | MS.gene23464:intron | 25.0% |
| ! | TTTATTCACAAAGAGTAAGA+TGG | + | chr7.3:14181546-14181565 | MS.gene23464:intron | 25.0% |
| !! | CAAACAAAAGTATAGTTACA+TGG | + | chr7.3:14181287-14181306 | MS.gene23464:intron | 25.0% |
| !! | CATGTAACTATACTTTTGTT+TGG | - | chr7.3:14181289-14181308 | None:intergenic | 25.0% |
| !! | CATTTTCATAATATAAAGGG+TGG | + | chr7.3:14179842-14179861 | MS.gene23464:intron | 25.0% |
| !! | TAGAGTTTTCATGAATTTTG+AGG | + | chr7.3:14180137-14180156 | MS.gene23464:intron | 25.0% |
| !! | TATGATATTTGACTTAGCTA+TGG | + | chr7.3:14179687-14179706 | MS.gene23464:intron | 25.0% |
| !! | TGTAATAGCAACATTTTGTT+TGG | + | chr7.3:14180059-14180078 | MS.gene23464:intron | 25.0% |
| !! | TGTTCATTTGCTAAATATTG+TGG | + | chr7.3:14180286-14180305 | MS.gene23464:intron | 25.0% |
| !!! | ATCTGCAAATTTTTAGTCAT+AGG | + | chr7.3:14179358-14179377 | MS.gene23464:intron | 25.0% |
| !!! | ATTTTGATGTTATTACAGCT+CGG | + | chr7.3:14182035-14182054 | MS.gene23464:intron | 25.0% |
| !!! | CATATATATAGGTATTGAGA+GGG | + | chr7.3:14179149-14179168 | MS.gene23464:intron | 25.0% |
| !!! | CTTATTGTTTTTAGAGGATA+GGG | - | chr7.3:14181870-14181889 | None:intergenic | 25.0% |
| !!! | TATGGATTGTTTGTTTTGTT+AGG | + | chr7.3:14179271-14179290 | MS.gene23464:intron | 25.0% |
| !!! | TCATATATATAGGTATTGAG+AGG | + | chr7.3:14179148-14179167 | MS.gene23464:intron | 25.0% |
| !!! | TCTTATTGTTTTTAGAGGAT+AGG | - | chr7.3:14181871-14181890 | None:intergenic | 25.0% |
| AAATTATCTCCACAAGATCA+TGG | - | chr7.3:14181331-14181350 | None:intergenic | 30.0% | |
| AACAATATTAAGGGTTGCTA+TGG | + | chr7.3:14180243-14180262 | MS.gene23464:intron | 30.0% | |
| AACGGTAAAAGACTGAAAAA+TGG | - | chr7.3:14180495-14180514 | None:intergenic | 30.0% | |
| AAGGGACTTCAGAAATTAAA+AGG | + | chr7.3:14180371-14180390 | MS.gene23464:intron | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr7.3:14181152-14181171 | None:intergenic | 30.0% | |
| AATTATGCTTCTCTGTTTAC+AGG | + | chr7.3:14180831-14180850 | MS.gene23464:intron | 30.0% | |
| ATCTTGTGGAGATAATTTAG+GGG | + | chr7.3:14181333-14181352 | MS.gene23464:intron | 30.0% | |
| ATTGTTCCAAAACTTGATTG+GGG | + | chr7.3:14180036-14180055 | MS.gene23464:intron | 30.0% | |
| GAATCCAACAAATTAGGAAA+CGG | - | chr7.3:14180513-14180532 | None:intergenic | 30.0% | |
| GATCTTGTGGAGATAATTTA+GGG | + | chr7.3:14181332-14181351 | MS.gene23464:intron | 30.0% | |
| GCAAAGAATACTGAAAATGT+TGG | + | chr7.3:14181820-14181839 | MS.gene23464:CDS | 30.0% | |
| GGAAATTGGATCATTACAAT+TGG | + | chr7.3:14179170-14179189 | MS.gene23464:CDS | 30.0% | |
| GGAGCAATGAACAATATTAA+GGG | + | chr7.3:14180234-14180253 | MS.gene23464:intron | 30.0% | |
| TGATCTTGTGGAGATAATTT+AGG | + | chr7.3:14181331-14181350 | MS.gene23464:intron | 30.0% | |
| TGCAATGAATCCAACAAATT+AGG | - | chr7.3:14180519-14180538 | None:intergenic | 30.0% | |
| TGGAGCAATGAACAATATTA+AGG | + | chr7.3:14180233-14180252 | MS.gene23464:intron | 30.0% | |
| TTGAAGAACTGCTATTATCA+AGG | - | chr7.3:14180420-14180439 | None:intergenic | 30.0% | |
| TTTATTCTTGATTTCCCCAA+GGG | - | chr7.3:14181001-14181020 | None:intergenic | 30.0% | |
| ! | AATTAGTTTAAGAGGGTATG+CGG | - | chr7.3:14181386-14181405 | None:intergenic | 30.0% |
| ! | CCTATTTTGTATCCTAACTT+CGG | + | chr7.3:14180967-14180986 | MS.gene23464:intron | 30.0% |
| ! | TTTACCGTTTCCTAATTTGT+TGG | + | chr7.3:14180506-14180525 | MS.gene23464:intron | 30.0% |
| ! | TTTTATTCTTGATTTCCCCA+AGG | - | chr7.3:14181002-14181021 | None:intergenic | 30.0% |
| ! | TTTTGATGTTATTACAGCTC+GGG | + | chr7.3:14182036-14182055 | MS.gene23464:intron | 30.0% |
| !! | TTTAATTGATTTTCCTGCAG+AGG | + | chr7.3:14179004-14179023 | MS.gene23464:CDS | 30.0% |
| !! | TTTGCAAGTTTTAATGACCT+TGG | + | chr7.3:14182011-14182030 | MS.gene23464:intron | 30.0% |
| AAGAGCTTGTGAGATTGTTT+GGG | + | chr7.3:14181096-14181115 | MS.gene23464:intron | 35.0% | |
| ACATTATCAAGAGAAACGTG+TGG | + | chr7.3:14181413-14181432 | MS.gene23464:intron | 35.0% | |
| AGAATACTGAAAATGTTGGC+AGG | + | chr7.3:14181824-14181843 | MS.gene23464:CDS | 35.0% | |
| AGAGAATAGATTACCTCTAG+TGG | - | chr7.3:14179063-14179082 | None:intergenic | 35.0% | |
| ATTAAGAGAACTGCTAAGAC+AGG | + | chr7.3:14179314-14179333 | MS.gene23464:CDS | 35.0% | |
| CAACAGATTGCTAATCTTCA+GGG | + | chr7.3:14179543-14179562 | MS.gene23464:CDS | 35.0% | |
| CAGACTGTCATGATTTCTTA+TGG | + | chr7.3:14181487-14181506 | MS.gene23464:intron | 35.0% | |
| CATGTTAGTCCATAAACTAC+AGG | - | chr7.3:14180896-14180915 | None:intergenic | 35.0% | |
| CCGAAGTTAGGATACAAAAT+AGG | - | chr7.3:14180970-14180989 | None:intergenic | 35.0% | |
| CTACTAGGTGAAGTTAGTTA+AGG | + | chr7.3:14181044-14181063 | MS.gene23464:intron | 35.0% | |
| CTTAACTAACTTCACCTAGT+AGG | - | chr7.3:14181046-14181065 | None:intergenic | 35.0% | |
| CTTGTAATTCGCGAAGAATT+TGG | + | chr7.3:14181943-14181962 | MS.gene23464:intron | 35.0% | |
| GAAGTTAGTTAAGGCCTATT+TGG | + | chr7.3:14181053-14181072 | MS.gene23464:intron | 35.0% | |
| GTAAGATGGGAATGAATTCA+AGG | + | chr7.3:14181560-14181579 | MS.gene23464:intron | 35.0% | |
| GTCTTCAGAAGGAAACATAA+TGG | - | chr7.3:14181447-14181466 | None:intergenic | 35.0% | |
| TAAGAGCTTGTGAGATTGTT+TGG | + | chr7.3:14181095-14181114 | MS.gene23464:intron | 35.0% | |
| TAGTTAAGGCCTATTTGGAT+TGG | + | chr7.3:14181058-14181077 | MS.gene23464:intron | 35.0% | |
| TCTGATTTCTTAAGCTATCC+TGG | - | chr7.3:14181187-14181206 | None:intergenic | 35.0% | |
| TGAAGTTCAGAAGTAGTTTC+AGG | - | chr7.3:14181469-14181488 | None:intergenic | 35.0% | |
| ! | ATATCATCTGACAGTGCTTT+TGG | + | chr7.3:14181729-14181748 | MS.gene23464:intron | 35.0% |
| ! | ATTACACCCCAATCAAGTTT+TGG | - | chr7.3:14180045-14180064 | None:intergenic | 35.0% |
| ! | ATTAGTTTAAGAGGGTATGC+GGG | - | chr7.3:14181385-14181404 | None:intergenic | 35.0% |
| ! | CTTATTTCTTAAAGCTCTCC+AGG | + | chr7.3:14181166-14181185 | MS.gene23464:intron | 35.0% |
| !! | ATAGGTATTGAGAGGGAAAT+TGG | + | chr7.3:14179156-14179175 | MS.gene23464:intron | 35.0% |
| !! | TGCATAAGCTATTTCTGTGA+CGG | - | chr7.3:14181219-14181238 | None:intergenic | 35.0% |
| !! | TTGTTGACTTGTGTTTGAGA+TGG | + | chr7.3:14179655-14179674 | MS.gene23464:intron | 35.0% |
| !!! | CTTTTTTGGAGGTGATATAG+AGG | + | chr7.3:14180114-14180133 | MS.gene23464:intron | 35.0% |
| AAAGCAAGCCAAAGTTATGC+AGG | + | chr7.3:14180554-14180573 | MS.gene23464:CDS | 40.0% | |
| AAAGCTTATTCCTACCTGTG+AGG | - | chr7.3:14181692-14181711 | None:intergenic | 40.0% | |
| ACCTTGTGTTACAATCCTTG+AGG | + | chr7.3:14180919-14180938 | MS.gene23464:intron | 40.0% | |
| AGAACTGCTATTATCAAGGC+TGG | - | chr7.3:14180416-14180435 | None:intergenic | 40.0% | |
| AGATGTCATAGATGATGCCT+TGG | + | chr7.3:14180719-14180738 | MS.gene23464:CDS | 40.0% | |
| AGGATAGGGAAAGAGTTACA+CGG | - | chr7.3:14181856-14181875 | None:intergenic | 40.0% | |
| AGTTATCTTCAGCTCCCAAA+GGG | + | chr7.3:14181788-14181807 | MS.gene23464:intron | 40.0% | |
| ATCAAGCACCTGTCAAGAAA+AGG | - | chr7.3:14181650-14181669 | None:intergenic | 40.0% | |
| CAAAGGGTTCAAGTGAACAA+TGG | - | chr7.3:14179611-14179630 | None:intergenic | 40.0% | |
| CCTTGTGTTACAATCCTTGA+GGG | + | chr7.3:14180920-14180939 | MS.gene23464:intron | 40.0% | |
| CTACCAAATCGTATCCTACT+AGG | + | chr7.3:14181029-14181048 | MS.gene23464:intron | 40.0% | |
| CTGGAATTCCTGCATAACTT+TGG | - | chr7.3:14180565-14180584 | None:intergenic | 40.0% | |
| GATTTGAATCTGTGACATCC+AGG | + | chr7.3:14179952-14179971 | MS.gene23464:intron | 40.0% | |
| GCAACAGATTGCTAATCTTC+AGG | + | chr7.3:14179542-14179561 | MS.gene23464:CDS | 40.0% | |
| GCAGGAATTCCAGAAACAAT+CGG | + | chr7.3:14180572-14180591 | MS.gene23464:CDS | 40.0% | |
| GGCAATGTCAGCTATGAATA+AGG | + | chr7.3:14179780-14179799 | MS.gene23464:CDS | 40.0% | |
| GTTGGATTCATTGCAGCAAA+TGG | + | chr7.3:14180524-14180543 | MS.gene23464:intron | 40.0% | |
| TACACCAGGTTTCCAAGAAA+GGG | + | chr7.3:14179870-14179889 | MS.gene23464:intron | 40.0% | |
| TCAAGCACCTGTCAAGAAAA+GGG | - | chr7.3:14181649-14181668 | None:intergenic | 40.0% | |
| TCACCTAGTAGGATACGATT+TGG | - | chr7.3:14181035-14181054 | None:intergenic | 40.0% | |
| TCATGAACTAACATGAGAGC+AGG | - | chr7.3:14180013-14180032 | None:intergenic | 40.0% | |
| TGACAGGTGCTTGATGAAAT+CGG | + | chr7.3:14181655-14181674 | MS.gene23464:intron | 40.0% | |
| TTCAGCTTCATCATCATCCA+AGG | - | chr7.3:14180739-14180758 | None:intergenic | 40.0% | |
| TTGCTAATCTTCAGGGTAGT+CGG | + | chr7.3:14179550-14179569 | MS.gene23464:CDS | 40.0% | |
| TTTGTGCGAGTTTGATGGAA+TGG | + | chr7.3:14180213-14180232 | MS.gene23464:intron | 40.0% | |
| ! | AGTAGTTTCAGGTCTTCAGA+AGG | - | chr7.3:14181458-14181477 | None:intergenic | 40.0% |
| ! | GGCTTTGTCACTTAGTTACA+AGG | + | chr7.3:14181508-14181527 | MS.gene23464:intron | 40.0% |
| ! | TCACTTACCCTTTTCTTGAC+AGG | + | chr7.3:14181639-14181658 | MS.gene23464:intron | 40.0% |
| !! | ATAACTTTGGCTTGCTTTGC+TGG | - | chr7.3:14180552-14180571 | None:intergenic | 40.0% |
| !! | CAAGCTGAGAAGTTGTTTCT+AGG | + | chr7.3:14179930-14179949 | MS.gene23464:intron | 40.0% |
| AACTGCTAAGACAGGAAACG+AGG | + | chr7.3:14179322-14179341 | MS.gene23464:CDS | 45.0% | |
| AACTTCGGTAGTAACACCCT+TGG | + | chr7.3:14180982-14181001 | MS.gene23464:intron | 45.0% | |
| ACACCAGGTTTCCAAGAAAG+GGG | + | chr7.3:14179871-14179890 | MS.gene23464:intron | 45.0% | |
| ACTTCGGTAGTAACACCCTT+GGG | + | chr7.3:14180983-14181002 | MS.gene23464:intron | 45.0% | |
| AGTTACATGGGTCATGCCAT+TGG | + | chr7.3:14181300-14181319 | MS.gene23464:intron | 45.0% | |
| CAAGATCATGGATAGCCCAA+TGG | - | chr7.3:14181319-14181338 | None:intergenic | 45.0% | |
| CAGTTATCTTCAGCTCCCAA+AGG | + | chr7.3:14181787-14181806 | MS.gene23464:intron | 45.0% | |
| CCCTCAAGGATTGTAACACA+AGG | - | chr7.3:14180923-14180942 | None:intergenic | 45.0% | |
| CTGGGGAGGGTAAATCTATA+TGG | + | chr7.3:14179896-14179915 | MS.gene23464:intron | 45.0% | |
| GAAATGACTAACGCCACTAG+AGG | + | chr7.3:14179047-14179066 | MS.gene23464:CDS | 45.0% | |
| GCAAGTTTGTGCGAGTTTGA+TGG | + | chr7.3:14180208-14180227 | MS.gene23464:intron | 45.0% | |
| GCACATTCTTCTGTTGCTGT+TGG | + | chr7.3:14179739-14179758 | MS.gene23464:CDS | 45.0% | |
| GTACACCAGGTTTCCAAGAA+AGG | + | chr7.3:14179869-14179888 | MS.gene23464:intron | 45.0% | |
| GTTACATGGGTCATGCCATT+GGG | + | chr7.3:14181301-14181320 | MS.gene23464:intron | 45.0% | |
| TACTAGCTCGTCAGCTGATA+AGG | + | chr7.3:14179514-14179533 | MS.gene23464:CDS | 45.0% | |
| TGCTAATCTTCAGGGTAGTC+GGG | + | chr7.3:14179551-14179570 | MS.gene23464:CDS | 45.0% | |
| TTGGGCTATCCATGATCTTG+TGG | + | chr7.3:14181319-14181338 | MS.gene23464:intron | 45.0% | |
| TTTGCTGCGATTCTCCCTTT+GGG | - | chr7.3:14181805-14181824 | None:intergenic | 45.0% | |
| ! | CTAAGCATTGCTAACCCTCA+AGG | - | chr7.3:14180937-14180956 | None:intergenic | 45.0% |
| ! | GGATGATGATGAAGCTGAAG+AGG | + | chr7.3:14180740-14180759 | MS.gene23464:CDS | 45.0% |
| ! | TCTGTTGCTGTTGGCATGAA+AGG | + | chr7.3:14179748-14179767 | MS.gene23464:CDS | 45.0% |
| !! | AGGGTGTTACTACCGAAGTT+AGG | - | chr7.3:14180982-14181001 | None:intergenic | 45.0% |
| !! | TGATGACCTTGAGAAGCGTT+TGG | + | chr7.3:14182062-14182081 | MS.gene23464:CDS | 45.0% |
| !! | GTTAAATTAAATATATTAAA+AGG | - | chr7.3:14179219-14179238 | None:intergenic | 5.0% |
| AAAGGGTGGTCTAGTACACC+AGG | + | chr7.3:14179856-14179875 | MS.gene23464:intron | 50.0% | |
| ACACACACACACACACGGAA+AGG | + | chr7.3:14180352-14180371 | MS.gene23464:intron | 50.0% | |
| ACTAACATGAGAGCAGGCCT+TGG | - | chr7.3:14180007-14180026 | None:intergenic | 50.0% | |
| CACACACACACACACACACA+CGG | + | chr7.3:14180347-14180366 | MS.gene23464:intron | 50.0% | |
| CACACACACACACACGGAAA+GGG | + | chr7.3:14180353-14180372 | MS.gene23464:intron | 50.0% | |
| CACCAGGTTTCCAAGAAAGG+GGG | + | chr7.3:14179872-14179891 | MS.gene23464:intron | 50.0% | |
| CCAGAAACAATCGGCACAGA+TGG | + | chr7.3:14180581-14180600 | MS.gene23464:CDS | 50.0% | |
| CTCGTCAGCTGATAAGGCTT+AGG | + | chr7.3:14179520-14179539 | MS.gene23464:CDS | 50.0% | |
| CTTCGGTAGTAACACCCTTG+GGG | + | chr7.3:14180984-14181003 | MS.gene23464:intron | 50.0% | |
| CTTTGCTGCGATTCTCCCTT+TGG | - | chr7.3:14181806-14181825 | None:intergenic | 50.0% | |
| GTCGATATTGCCTCACAGGT+AGG | + | chr7.3:14181679-14181698 | MS.gene23464:intron | 50.0% | |
| GTTTCCAAGAAAGGGGGTCT+GGG | + | chr7.3:14179878-14179897 | MS.gene23464:intron | 50.0% | |
| TGTGACATCCAGGTCACACA+AGG | + | chr7.3:14179962-14179981 | MS.gene23464:intron | 50.0% | |
| TGTGTGTGCATGTGACAGGA+GGG | - | chr7.3:14180335-14180354 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGCATGTGAC+AGG | - | chr7.3:14180339-14180358 | None:intergenic | 50.0% | |
| TTTCCAAGAAAGGGGGTCTG+GGG | + | chr7.3:14179879-14179898 | MS.gene23464:intron | 50.0% | |
| ! | GGTTGCTTGTCATTTCGTGC+AGG | + | chr7.3:14179708-14179727 | MS.gene23464:intron | 50.0% |
| !! | CCATCTGTGCCGATTGTTTC+TGG | - | chr7.3:14180584-14180603 | None:intergenic | 50.0% |
| !! | TGACCTTGAGAAGCGTTTGG+CGG | + | chr7.3:14182065-14182084 | MS.gene23464:CDS | 50.0% |
| !! | TGGCATGAAAGGCGCTACTA+AGG | + | chr7.3:14179759-14179778 | MS.gene23464:CDS | 50.0% |
| AGGCATAGCAACTCACACGC+AGG | + | chr7.3:14179584-14179603 | MS.gene23464:CDS | 55.0% | |
| GACCCCCTTTCTTGGAAACC+TGG | - | chr7.3:14179877-14179896 | None:intergenic | 55.0% | |
| GCAACCTTGCGATTGTGCCA+AGG | + | chr7.3:14179987-14180006 | MS.gene23464:intron | 55.0% | |
| GGTTTCCAAGAAAGGGGGTC+TGG | + | chr7.3:14179877-14179896 | MS.gene23464:intron | 55.0% | |
| GTGTGTGTGCATGTGACAGG+AGG | - | chr7.3:14180336-14180355 | None:intergenic | 55.0% | |
| !! | CGGTGTCGATATTGCCTCAC+AGG | + | chr7.3:14181675-14181694 | MS.gene23464:CDS | 55.0% |
| CAAGAAAGGGGGTCTGGGGA+GGG | + | chr7.3:14179883-14179902 | MS.gene23464:intron | 60.0% | |
| CAGGCCTTGGCACAATCGCA+AGG | - | chr7.3:14179994-14180013 | None:intergenic | 60.0% | |
| CTCTCACGAAGAGCCTCTGC+AGG | - | chr7.3:14179020-14179039 | None:intergenic | 60.0% | |
| GAGCCGCCAAACGCTTCTCA+AGG | - | chr7.3:14182071-14182090 | None:intergenic | 60.0% | |
| GGTAGTCGGGCTCAGATGAG+AGG | + | chr7.3:14179564-14179583 | MS.gene23464:CDS | 60.0% | |
| GGTTGCTGCCTTGTGTGACC+TGG | - | chr7.3:14179973-14179992 | None:intergenic | 60.0% | |
| CCAAGAAAGGGGGTCTGGGG+AGG | + | chr7.3:14179882-14179901 | MS.gene23464:intron | 65.0% | |
| CCTCCCCAGACCCCCTTTCT+TGG | - | chr7.3:14179885-14179904 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 14178987 | 14182104 | 14178987 | ID=MS.gene23464 |
| chr7.3 | mRNA | 14178987 | 14182104 | 14178987 | ID=MS.gene23464.t1;Parent=MS.gene23464 |
| chr7.3 | exon | 14178987 | 14179068 | 14178987 | ID=MS.gene23464.t1.exon1;Parent=MS.gene23464.t1 |
| chr7.3 | CDS | 14178987 | 14179068 | 14178987 | ID=cds.MS.gene23464.t1;Parent=MS.gene23464.t1 |
| chr7.3 | exon | 14179160 | 14179194 | 14179160 | ID=MS.gene23464.t1.exon2;Parent=MS.gene23464.t1 |
| chr7.3 | CDS | 14179160 | 14179194 | 14179160 | ID=cds.MS.gene23464.t1;Parent=MS.gene23464.t1 |
| chr7.3 | exon | 14179293 | 14179343 | 14179293 | ID=MS.gene23464.t1.exon3;Parent=MS.gene23464.t1 |
| chr7.3 | CDS | 14179293 | 14179343 | 14179293 | ID=cds.MS.gene23464.t1;Parent=MS.gene23464.t1 |
| chr7.3 | exon | 14179501 | 14179605 | 14179501 | ID=MS.gene23464.t1.exon4;Parent=MS.gene23464.t1 |
| chr7.3 | CDS | 14179501 | 14179605 | 14179501 | ID=cds.MS.gene23464.t1;Parent=MS.gene23464.t1 |
| chr7.3 | exon | 14179730 | 14179801 | 14179730 | ID=MS.gene23464.t1.exon5;Parent=MS.gene23464.t1 |
| chr7.3 | CDS | 14179730 | 14179801 | 14179730 | ID=cds.MS.gene23464.t1;Parent=MS.gene23464.t1 |
| chr7.3 | exon | 14180540 | 14180611 | 14180540 | ID=MS.gene23464.t1.exon6;Parent=MS.gene23464.t1 |
| chr7.3 | CDS | 14180540 | 14180611 | 14180540 | ID=cds.MS.gene23464.t1;Parent=MS.gene23464.t1 |
| chr7.3 | exon | 14180705 | 14180785 | 14180705 | ID=MS.gene23464.t1.exon7;Parent=MS.gene23464.t1 |
| chr7.3 | CDS | 14180705 | 14180785 | 14180705 | ID=cds.MS.gene23464.t1;Parent=MS.gene23464.t1 |
| chr7.3 | exon | 14181661 | 14181696 | 14181661 | ID=MS.gene23464.t1.exon8;Parent=MS.gene23464.t1 |
| chr7.3 | CDS | 14181661 | 14181696 | 14181661 | ID=cds.MS.gene23464.t1;Parent=MS.gene23464.t1 |
| chr7.3 | exon | 14181790 | 14181845 | 14181790 | ID=MS.gene23464.t1.exon9;Parent=MS.gene23464.t1 |
| chr7.3 | CDS | 14181790 | 14181845 | 14181790 | ID=cds.MS.gene23464.t1;Parent=MS.gene23464.t1 |
| chr7.3 | exon | 14182053 | 14182104 | 14182053 | ID=MS.gene23464.t1.exon10;Parent=MS.gene23464.t1 |
| chr7.3 | CDS | 14182053 | 14182104 | 14182053 | ID=cds.MS.gene23464.t1;Parent=MS.gene23464.t1 |
| Gene Sequence |
| Protein sequence |
