Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22557.t1 | KEH27455.1 | 95.4 | 614 | 15 | 2 | 1 | 603 | 9 | 620 | 0.00E+00 | 1146.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22557.t1 | Q9C5X3 | 73.6 | 613 | 150 | 5 | 1 | 603 | 56 | 666 | 6.6e-262 | 904.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22557.t1 | A0A072UNN9 | 95.4 | 614 | 15 | 2 | 1 | 603 | 9 | 620 | 0.0e+00 | 1146.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene22557 | 0.807114 | 5.92E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene22557 | 0.804284 | 2.33E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene22557 | 0.808094 | 3.67E-50 | -1.69E-46 |
| MS.gene050105 | MS.gene22557 | 0.813592 | 2.37E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene22557 | 0.800435 | 1.44E-48 | -1.69E-46 |
| MS.gene051122 | MS.gene22557 | 0.814502 | 1.49E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene22557 | 0.804529 | 2.07E-49 | -1.69E-46 |
| MS.gene051832 | MS.gene22557 | 0.814099 | 1.83E-51 | -1.69E-46 |
| MS.gene051935 | MS.gene22557 | 0.807176 | 5.74E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene22557 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene052500 | MS.gene22557 | 0.813439 | 2.56E-51 | -1.69E-46 |
| MS.gene052502 | MS.gene22557 | 0.809379 | 1.95E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene22557 | 0.830489 | 2.85E-55 | -1.69E-46 |
| MS.gene052685 | MS.gene22557 | 0.807334 | 5.32E-50 | -1.69E-46 |
| MS.gene052824 | MS.gene22557 | 0.800676 | 1.29E-48 | -1.69E-46 |
| MS.gene052826 | MS.gene22557 | 0.810762 | 9.81E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene22557 | 0.820723 | 5.90E-53 | -1.69E-46 |
| MS.gene053006 | MS.gene22557 | 0.813389 | 2.62E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene22557 | 0.831696 | 1.44E-55 | -1.69E-46 |
| MS.gene054222 | MS.gene22557 | 0.807253 | 5.53E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene22557 | 0.829318 | 5.50E-55 | -1.69E-46 |
| MS.gene055225 | MS.gene22557 | 0.804725 | 1.88E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene22557 | 0.807827 | 4.18E-50 | -1.69E-46 |
| MS.gene055841 | MS.gene22557 | 0.803456 | 3.46E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene22557 | 0.820663 | 6.09E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene22557 | 0.851793 | 7.04E-61 | -1.69E-46 |
| MS.gene057208 | MS.gene22557 | 0.804483 | 2.11E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene22557 | 0.804924 | 1.71E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene22557 | 0.803973 | 2.70E-49 | -1.69E-46 |
| MS.gene058498 | MS.gene22557 | 0.800039 | 1.74E-48 | -1.69E-46 |
| MS.gene058635 | MS.gene22557 | 0.80494 | 1.70E-49 | -1.69E-46 |
| MS.gene058897 | MS.gene22557 | 0.819397 | 1.19E-52 | -1.69E-46 |
| MS.gene05952 | MS.gene22557 | 0.820383 | 7.06E-53 | -1.69E-46 |
| MS.gene059952 | MS.gene22557 | 0.819454 | 1.15E-52 | -1.69E-46 |
| MS.gene060012 | MS.gene22557 | 0.810041 | 1.40E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene22557 | 0.855935 | 4.52E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22557.t1 | MTR_5g011790 | 95.440 | 614 | 15 | 2 | 1 | 603 | 58 | 669 | 0.0 | 1208 |
| MS.gene22557.t1 | MTR_5g011790 | 95.440 | 614 | 15 | 2 | 1 | 603 | 9 | 620 | 0.0 | 1206 |
| MS.gene22557.t1 | MTR_4g102120 | 82.295 | 610 | 100 | 4 | 1 | 603 | 58 | 666 | 0.0 | 1061 |
| MS.gene22557.t1 | MTR_5g011790 | 94.963 | 536 | 14 | 2 | 1 | 525 | 58 | 591 | 0.0 | 1052 |
| MS.gene22557.t1 | MTR_4g023610 | 61.833 | 600 | 215 | 4 | 1 | 586 | 57 | 656 | 0.0 | 778 |
| MS.gene22557.t1 | MTR_4g120070 | 53.153 | 222 | 62 | 4 | 209 | 402 | 7 | 214 | 8.68e-61 | 219 |
| MS.gene22557.t1 | MTR_4g120060 | 52.128 | 94 | 45 | 0 | 100 | 193 | 35 | 128 | 2.54e-27 | 107 |
| MS.gene22557.t1 | MTR_3g090170 | 22.967 | 492 | 315 | 19 | 15 | 485 | 51 | 499 | 5.47e-19 | 91.3 |
| MS.gene22557.t1 | MTR_3g090170 | 23.907 | 389 | 245 | 13 | 15 | 388 | 51 | 403 | 2.07e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22557.t1 | AT1G12360 | 73.409 | 613 | 151 | 5 | 1 | 603 | 56 | 666 | 0.0 | 942 |
| MS.gene22557.t1 | AT4G12120 | 63.725 | 612 | 208 | 6 | 1 | 603 | 56 | 662 | 0.0 | 818 |
| MS.gene22557.t1 | AT1G02010 | 64.763 | 613 | 189 | 7 | 1 | 596 | 26 | 628 | 0.0 | 803 |
| MS.gene22557.t1 | AT1G02010 | 64.763 | 613 | 189 | 7 | 1 | 596 | 58 | 660 | 0.0 | 803 |
| MS.gene22557.t1 | AT1G02010 | 62.969 | 613 | 187 | 8 | 1 | 596 | 58 | 647 | 0.0 | 794 |
| MS.gene22557.t1 | AT1G02010 | 61.742 | 643 | 189 | 8 | 1 | 596 | 58 | 690 | 0.0 | 786 |
| MS.gene22557.t1 | AT1G02010 | 63.934 | 549 | 171 | 7 | 1 | 532 | 58 | 596 | 0.0 | 723 |
| MS.gene22557.t1 | AT1G02010 | 64.107 | 521 | 160 | 7 | 93 | 596 | 1 | 511 | 0.0 | 668 |
| MS.gene22557.t1 | AT1G77140 | 23.279 | 494 | 312 | 17 | 15 | 485 | 51 | 500 | 2.51e-20 | 95.5 |
| MS.gene22557.t1 | AT2G17980 | 20.033 | 604 | 412 | 20 | 9 | 591 | 55 | 608 | 2.75e-12 | 70.1 |
Find 125 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAACCTGTACCTCTATTA+TGG | 0.176535 | 5.2:+4327798 | None:intergenic |
| AGAGCATTAGAGGATCTATT+TGG | 0.212778 | 5.2:-4331259 | MS.gene22557:CDS |
| GGAGTCAGGACTGCGGGAAC+TGG | 0.293146 | 5.2:-4328497 | MS.gene22557:CDS |
| CAAAGCTTGCTGCTGGAGTC+TGG | 0.293765 | 5.2:-4330966 | MS.gene22557:CDS |
| TGAGAGAAAAGAAGTTCTTT+TGG | 0.301336 | 5.2:-4330562 | MS.gene22557:CDS |
| TGATACCATGCAGATGAATT+TGG | 0.305087 | 5.2:-4332075 | MS.gene22557:intron |
| AAAACTAATTCTCTGGAAAT+AGG | 0.306579 | 5.2:+4332249 | None:intergenic |
| GTCTTCTTGATCCAGCTTGC+AGG | 0.306762 | 5.2:-4328541 | MS.gene22557:intron |
| CTGAATAGGGAAATTATTCT+AGG | 0.309246 | 5.2:-4325990 | MS.gene22557:CDS |
| GTGTCATGATTTGCTGAATA+TGG | 0.312135 | 5.2:-4330722 | MS.gene22557:CDS |
| GTCTCAGTCTGAGGAAAATT+AGG | 0.327470 | 5.2:+4330913 | None:intergenic |
| CGTCACATACTTCCTGTATA+AGG | 0.331884 | 5.2:+4332374 | None:intergenic |
| ACCATATACCTGGCAATCTA+TGG | 0.332263 | 5.2:+4332043 | None:intergenic |
| CGACTATTGTACATCATATC+TGG | 0.332409 | 5.2:+4325785 | None:intergenic |
| CACGAGAAATCAACTGTCTA+AGG | 0.336896 | 5.2:-4327500 | MS.gene22557:CDS |
| AAACGTTTGACTGGTGCTTT+CGG | 0.359481 | 5.2:-4327931 | MS.gene22557:CDS |
| ACTCCAGCAGCAAGCTTTGT+AGG | 0.367263 | 5.2:+4330970 | None:intergenic |
| AGCTTACTAGAAGGCTGAAT+AGG | 0.377664 | 5.2:-4326004 | MS.gene22557:CDS |
| AAATAATGAGAGAGCATTAG+AGG | 0.380377 | 5.2:-4331269 | MS.gene22557:CDS |
| ATAACCTGTACCTCTATTAT+GGG | 0.393071 | 5.2:+4327799 | None:intergenic |
| TATTTCCAGAGAATTAGTTT+TGG | 0.393323 | 5.2:-4332247 | MS.gene22557:CDS |
| AATGTCCAAAACTAATTCTC+TGG | 0.394956 | 5.2:+4332242 | None:intergenic |
| CTGAGGGTGTCGTCTCGATT+AGG | 0.402968 | 5.2:-4332210 | MS.gene22557:CDS |
| AGGACTGCGGGAACTGGGCC+AGG | 0.408525 | 5.2:-4328491 | MS.gene22557:CDS |
| AACAGTATCATTAGGGAGTC+AGG | 0.409285 | 5.2:-4328511 | MS.gene22557:CDS |
| GCTTACTAGAAGGCTGAATA+GGG | 0.411575 | 5.2:-4326003 | MS.gene22557:CDS |
| TTCTAGTGATTTCAAGAAGA+TGG | 0.412872 | 5.2:-4326184 | MS.gene22557:CDS |
| GAGCATTAGAGGATCTATTT+GGG | 0.412978 | 5.2:-4331258 | MS.gene22557:CDS |
| TATGTCCACTCATGTATTAC+AGG | 0.422700 | 5.2:+4330754 | None:intergenic |
| CTTGTCGGCACGCAGTGATT+CGG | 0.429467 | 5.2:-4326220 | MS.gene22557:intron |
| TGTGTTTGCGTCTAGGGACT+TGG | 0.431530 | 5.2:+4331017 | None:intergenic |
| CGACTATTTGTATTCATTGT+CGG | 0.433005 | 5.2:-4326156 | MS.gene22557:CDS |
| TGAGAAATTTGACGGAGAAA+AGG | 0.436497 | 5.2:-4328176 | MS.gene22557:CDS |
| GTGAATAACTTGAGAATGCT+TGG | 0.439454 | 5.2:-4327973 | MS.gene22557:CDS |
| AGTCATTGTGTTTGCGTCTA+GGG | 0.444874 | 5.2:+4331011 | None:intergenic |
| TAGTCATTGTGTTTGCGTCT+AGG | 0.448346 | 5.2:+4331010 | None:intergenic |
| TGGAGGATCATGATCCTGTA+TGG | 0.450396 | 5.2:-4330542 | MS.gene22557:CDS |
| TCAGATGTGTTACTTCTCTC+TGG | 0.455505 | 5.2:+4332959 | None:intergenic |
| GAGAAATTTGACGGAGAAAA+GGG | 0.455838 | 5.2:-4328175 | MS.gene22557:CDS |
| CACAAATTCAGCATGGTTCA+AGG | 0.455901 | 5.2:-4330365 | MS.gene22557:intron |
| ATCAAGACGTACACCAAGTT+GGG | 0.456649 | 5.2:-4327389 | MS.gene22557:CDS |
| AATTATTCAAACCTCTGATC+GGG | 0.457842 | 5.2:+4326125 | None:intergenic |
| GGTAGACCTCCGGCCTTGCC+AGG | 0.458860 | 5.2:+4330585 | None:intergenic |
| CTGGAAGGGCTCCCTTATAC+AGG | 0.460763 | 5.2:-4332386 | MS.gene22557:CDS |
| GTTCCTACAAAGCTTGCTGC+TGG | 0.461493 | 5.2:-4330973 | MS.gene22557:CDS |
| TGAATAACTTGAGAATGCTT+GGG | 0.470800 | 5.2:-4327972 | MS.gene22557:CDS |
| TGATGTAAAGTGCCAGCAAA+AGG | 0.472976 | 5.2:+4327430 | None:intergenic |
| AAACCGCGAGGCTCTGATGA+TGG | 0.474037 | 5.2:-4327364 | MS.gene22557:CDS |
| TATTGACAGAACTATTGATC+AGG | 0.475763 | 5.2:-4330875 | MS.gene22557:intron |
| GAGTCAGGACTGCGGGAACT+GGG | 0.476609 | 5.2:-4328496 | MS.gene22557:CDS |
| ATGTGTTACTTCTCTCTGGT+TGG | 0.485539 | 5.2:+4332963 | None:intergenic |
| AAATATATAGCATCCATTGT+TGG | 0.485606 | 5.2:+4332993 | None:intergenic |
| GTCACATACTTCCTGTATAA+GGG | 0.487146 | 5.2:+4332375 | None:intergenic |
| TGGCGAAGCTCGAGCCATAC+AGG | 0.490327 | 5.2:+4330528 | None:intergenic |
| CGTCTTGATCTCATTGAATG+AGG | 0.494301 | 5.2:+4327403 | None:intergenic |
| GTTTATCCTGAGAAATTTGA+CGG | 0.499699 | 5.2:-4328184 | MS.gene22557:CDS |
| CACGCAGTGATTCGGTGCTT+AGG | 0.499930 | 5.2:-4326212 | MS.gene22557:intron |
| GTCAATAATGAGCAACTCGC+AGG | 0.502476 | 5.2:+4330891 | None:intergenic |
| CTTGCCACAAGCTTACTAGA+AGG | 0.509619 | 5.2:-4326013 | MS.gene22557:CDS |
| AAAGCTTGCTGCTGGAGTCT+GGG | 0.510328 | 5.2:-4330965 | MS.gene22557:CDS |
| CGACAAAACTAACCTCTACA+TGG | 0.514875 | 5.2:+4329424 | None:intergenic |
| AAATTATTCAAACCTCTGAT+CGG | 0.517358 | 5.2:+4326124 | None:intergenic |
| CTCTGGAAATAGGTGAGCTA+AGG | 0.517467 | 5.2:+4332259 | None:intergenic |
| GCTCTGATGATGGGTATTCA+AGG | 0.518562 | 5.2:-4327354 | MS.gene22557:intron |
| TTTATCAGACATGGCTGGAA+GGG | 0.518629 | 5.2:-4332400 | MS.gene22557:CDS |
| CTGCAAGGATAGAACGTCCT+GGG | 0.524780 | 5.2:-4327855 | MS.gene22557:CDS |
| AAACAAGATCTTGCTCCACC+TGG | 0.525352 | 5.2:+4328473 | None:intergenic |
| AACAAGGGACTTACAGAAGA+TGG | 0.525806 | 5.2:-4329493 | MS.gene22557:CDS |
| TCTAGTGATTTCAAGAAGAT+GGG | 0.526090 | 5.2:-4326183 | MS.gene22557:CDS |
| CATTAGGGAGTCAGGACTGC+GGG | 0.533800 | 5.2:-4328503 | MS.gene22557:CDS |
| GCGCTTGTTAATGATTCTTG+CGG | 0.538621 | 5.2:-4328209 | MS.gene22557:CDS |
| TTTAAGGTTCCTGGCAAGGC+CGG | 0.541852 | 5.2:-4330594 | MS.gene22557:intron |
| CGGTGGCGCAACCCGATCAG+AGG | 0.552061 | 5.2:-4326136 | MS.gene22557:intron |
| AACCGCGAGGCTCTGATGAT+GGG | 0.553335 | 5.2:-4327363 | MS.gene22557:CDS |
| AAGGTTCCTGGCAAGGCCGG+AGG | 0.557439 | 5.2:-4330591 | MS.gene22557:CDS |
| AATGAAGAGAATAATCGTAA+AGG | 0.560472 | 5.2:-4331235 | MS.gene22557:CDS |
| GCTGCAAGGATAGAACGTCC+TGG | 0.561595 | 5.2:-4327856 | MS.gene22557:CDS |
| AAGGCAACCGTTACCAACAA+TGG | 0.561902 | 5.2:-4333006 | MS.gene22557:CDS |
| TCAATTTGTTCGCTGTATTG+TGG | 0.564959 | 5.2:+4329459 | None:intergenic |
| GATCAAGACGTACACCAAGT+TGG | 0.565011 | 5.2:-4327390 | MS.gene22557:CDS |
| ATAGCATCCATTGTTGGTAA+CGG | 0.565143 | 5.2:+4332999 | None:intergenic |
| AACTCGCAGGTCTCAGTCTG+AGG | 0.566951 | 5.2:+4330904 | None:intergenic |
| CTTGGCAGCACGAAAGCGGA+TGG | 0.567144 | 5.2:+4331035 | None:intergenic |
| TGGACATTAGAAAAGGTCTG+AGG | 0.569327 | 5.2:-4332227 | MS.gene22557:CDS |
| GGACATTAGAAAAGGTCTGA+GGG | 0.574848 | 5.2:-4332226 | MS.gene22557:CDS |
| AATACCGTGATGAATTGTGC+AGG | 0.575005 | 5.2:+4325948 | None:intergenic |
| AAAGGGTCAGAATTTGATGA+AGG | 0.585880 | 5.2:-4328158 | MS.gene22557:intron |
| AATGTCTAACTCATGCAAGA+TGG | 0.586916 | 5.2:-4333282 | MS.gene22557:CDS |
| GCAGCACGAAAGCGGATGGA+AGG | 0.590832 | 5.2:+4331039 | None:intergenic |
| ACTGCGGGAACTGGGCCAGG+TGG | 0.591719 | 5.2:-4328488 | MS.gene22557:CDS |
| AGTCTGAGGAAAATTAGGTA+TGG | 0.591962 | 5.2:+4330918 | None:intergenic |
| TGCCAGCAAAAGGTGAGCTG+TGG | 0.599301 | 5.2:+4327440 | None:intergenic |
| TCAGCCTTCTAGTAAGCTTG+TGG | 0.601262 | 5.2:+4326009 | None:intergenic |
| CTATTTGTATTCATTGTCGG+TGG | 0.608557 | 5.2:-4326153 | MS.gene22557:CDS |
| TGTTGCATGTTTGAATGCAA+TGG | 0.613656 | 5.2:-4331212 | MS.gene22557:CDS |
| CAAACTCTCCCTCCATGTAG+AGG | 0.618973 | 5.2:-4329436 | MS.gene22557:intron |
| GGGACTTGGCAGCACGAAAG+CGG | 0.620933 | 5.2:+4331031 | None:intergenic |
| CTTACATGAAACACCTTCGT+CGG | 0.627545 | 5.2:+4333250 | None:intergenic |
| CAATGAATACAAATAGTCGT+TGG | 0.627844 | 5.2:+4326160 | None:intergenic |
| GAGCTGTGGAAAGTTGCACT+TGG | 0.632632 | 5.2:+4327454 | None:intergenic |
| AAAACTAACCTCTACATGGA+GGG | 0.632717 | 5.2:+4329428 | None:intergenic |
| GAGAAATCAACTGTCTAAGG+AGG | 0.645035 | 5.2:-4327497 | MS.gene22557:CDS |
| GGTAGCACGGTTAACAGATG+AGG | 0.645727 | 5.2:-4328007 | MS.gene22557:CDS |
| TCATGATTTGCTGAATATGG+AGG | 0.647982 | 5.2:-4330719 | MS.gene22557:CDS |
| CTACATCAGCAATATGAGCA+TGG | 0.648526 | 5.2:+4330508 | None:intergenic |
| GCACTTGGATCATTCAAACA+TGG | 0.648843 | 5.2:+4327469 | None:intergenic |
| TTGCTCCTGTAATACATGAG+TGG | 0.652791 | 5.2:-4330759 | MS.gene22557:CDS |
| GAATAACTTGAGAATGCTTG+GGG | 0.654755 | 5.2:-4327971 | MS.gene22557:CDS |
| TCGATTAGGTGCATTAAGAG+AGG | 0.657496 | 5.2:-4332196 | MS.gene22557:intron |
| CATGATTTGCTGAATATGGA+GGG | 0.667358 | 5.2:-4330718 | MS.gene22557:CDS |
| GCTTTGTAGGAACAAGATCA+CGG | 0.669039 | 5.2:+4330983 | None:intergenic |
| ATTCAGCAAATCATGACACA+TGG | 0.674046 | 5.2:+4330726 | None:intergenic |
| ATGGCTGATATCACCGACGA+AGG | 0.680593 | 5.2:-4333263 | MS.gene22557:CDS |
| GACAATGTCAGGCTAGTGAA+CGG | 0.683507 | 5.2:-4330431 | MS.gene22557:intron |
| AAAGCTGCACAAATTCAGCA+TGG | 0.683869 | 5.2:-4330372 | MS.gene22557:CDS |
| TGCAAGGATAGAACGTCCTG+GGG | 0.686134 | 5.2:-4327854 | MS.gene22557:CDS |
| TCATTAGGGAGTCAGGACTG+CGG | 0.691345 | 5.2:-4328504 | MS.gene22557:CDS |
| TGATCCTGCACAATTCATCA+CGG | 0.693413 | 5.2:-4325952 | MS.gene22557:intron |
| CAAAACTAACCTCTACATGG+AGG | 0.693964 | 5.2:+4329427 | None:intergenic |
| GTAGCAGTGAAATGTCAACA+AGG | 0.703273 | 5.2:-4329509 | MS.gene22557:CDS |
| TTGAAGACATACACAAACGA+AGG | 0.709550 | 5.2:-4333025 | MS.gene22557:CDS |
| TAGCAGTGAAATGTCAACAA+GGG | 0.710043 | 5.2:-4329508 | MS.gene22557:CDS |
| TACCCATCATCAGAGCCTCG+CGG | 0.738058 | 5.2:+4327361 | None:intergenic |
| CCAAGTTGGGCAAAACCGCG+AGG | 0.739809 | 5.2:-4327376 | MS.gene22557:CDS |
| AATAACTTGAGAATGCTTGG+GGG | 0.791847 | 5.2:-4327970 | MS.gene22557:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 4325798 | 4333303 | 4325798 | ID=MS.gene22557 |
| chr5.2 | mRNA | 4325798 | 4333303 | 4325798 | ID=MS.gene22557.t1;Parent=MS.gene22557 |
| chr5.2 | exon | 4333255 | 4333303 | 4333255 | ID=MS.gene22557.t1.exon1;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4333255 | 4333303 | 4333255 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4332972 | 4333050 | 4332972 | ID=MS.gene22557.t1.exon2;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4332972 | 4333050 | 4332972 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4332384 | 4332434 | 4332384 | ID=MS.gene22557.t1.exon3;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4332384 | 4332434 | 4332384 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4332197 | 4332293 | 4332197 | ID=MS.gene22557.t1.exon4;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4332197 | 4332293 | 4332197 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4332052 | 4332084 | 4332052 | ID=MS.gene22557.t1.exon5;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4332052 | 4332084 | 4332052 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4331177 | 4331302 | 4331177 | ID=MS.gene22557.t1.exon6;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4331177 | 4331302 | 4331177 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4330876 | 4331067 | 4330876 | ID=MS.gene22557.t1.exon7;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4330876 | 4331067 | 4330876 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4330699 | 4330782 | 4330699 | ID=MS.gene22557.t1.exon8;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4330699 | 4330782 | 4330699 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4330512 | 4330610 | 4330512 | ID=MS.gene22557.t1.exon9;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4330512 | 4330610 | 4330512 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4330366 | 4330442 | 4330366 | ID=MS.gene22557.t1.exon10;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4330366 | 4330442 | 4330366 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4329437 | 4329533 | 4329437 | ID=MS.gene22557.t1.exon11;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4329437 | 4329533 | 4329437 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4328423 | 4328548 | 4328423 | ID=MS.gene22557.t1.exon12;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4328423 | 4328548 | 4328423 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4328159 | 4328254 | 4328159 | ID=MS.gene22557.t1.exon13;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4328159 | 4328254 | 4328159 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4327925 | 4328028 | 4327925 | ID=MS.gene22557.t1.exon14;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4327925 | 4328028 | 4327925 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4327810 | 4327891 | 4327810 | ID=MS.gene22557.t1.exon15;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4327810 | 4327891 | 4327810 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4327355 | 4327539 | 4327355 | ID=MS.gene22557.t1.exon16;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4327355 | 4327539 | 4327355 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4326137 | 4326227 | 4326137 | ID=MS.gene22557.t1.exon17;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4326137 | 4326227 | 4326137 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4325953 | 4326042 | 4325953 | ID=MS.gene22557.t1.exon18;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4325953 | 4326042 | 4325953 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| chr5.2 | exon | 4325798 | 4325851 | 4325798 | ID=MS.gene22557.t1.exon19;Parent=MS.gene22557.t1 |
| chr5.2 | CDS | 4325798 | 4325851 | 4325798 | ID=cds.MS.gene22557.t1;Parent=MS.gene22557.t1 |
| Gene Sequence |
| Protein sequence |
