AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24374


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24374.t1 MTR_1g019940 98.561 417 6 0 1 417 1 417 0.0 852
MS.gene24374.t1 MTR_1g019940 98.321 417 5 1 1 417 1 415 0.0 844
MS.gene24374.t1 MTR_3g101410 78.164 403 86 2 5 407 4 404 0.0 643
MS.gene24374.t1 MTR_3g101400 76.427 403 93 2 5 407 4 404 0.0 633
MS.gene24374.t1 MTR_1g019940 97.987 298 6 0 120 417 1 298 0.0 608
MS.gene24374.t1 MTR_5g017670 57.560 377 155 3 19 394 14 386 1.32e-158 453
MS.gene24374.t1 MTR_5g017680 55.076 394 170 4 9 400 1 389 1.99e-158 452
MS.gene24374.t1 MTR_8g007040 43.237 414 195 13 11 410 22 409 9.33e-100 304
MS.gene24374.t1 MTR_8g007140 46.329 395 174 8 10 399 22 383 1.52e-94 290
MS.gene24374.t1 MTR_8g007090 42.317 397 200 11 11 399 22 397 5.11e-93 286
MS.gene24374.t1 MTR_8g007095 42.065 397 201 11 11 399 22 397 1.03e-92 286
MS.gene24374.t1 MTR_8g007125 42.998 407 201 11 11 410 22 404 3.75e-88 274
MS.gene24374.t1 MTR_8g007065 40.441 408 212 11 10 409 21 405 5.99e-85 266
MS.gene24374.t1 MTR_1g095165 28.501 407 253 14 21 412 75 458 3.49e-37 141
MS.gene24374.t1 MTR_7g094940 28.736 261 147 9 23 269 32 267 4.81e-25 105
MS.gene24374.t1 MTR_1g072190 25.513 341 217 12 23 358 32 340 6.26e-25 105
MS.gene24374.t1 MTR_2g029510 27.190 331 189 12 6 330 54 338 1.91e-20 93.2
MS.gene24374.t1 MTR_0368s0010 26.545 275 173 11 144 412 43 294 1.30e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24374.t1 AT2G26560 66.329 395 128 4 12 405 10 400 0.0 527
MS.gene24374.t1 AT4G37070 59.591 391 156 2 13 403 11 399 5.00e-169 480
MS.gene24374.t1 AT4G37050 60.804 398 148 2 14 404 28 424 3.08e-168 478
MS.gene24374.t1 AT4G37060 57.468 395 166 2 14 408 12 404 9.27e-165 469
MS.gene24374.t1 AT4G37070 59.200 375 151 2 13 387 11 383 1.52e-160 457
MS.gene24374.t1 AT4G37070 59.200 375 151 2 13 387 11 383 1.52e-160 457
MS.gene24374.t1 AT4G37060 53.286 426 166 3 14 408 12 435 3.58e-158 454
MS.gene24374.t1 AT4G37070 57.600 375 146 3 13 387 11 372 1.82e-152 436
MS.gene24374.t1 AT5G43590 53.077 390 172 4 13 399 6 387 7.65e-130 380
MS.gene24374.t1 AT5G43590 53.077 390 172 4 13 399 73 454 5.55e-129 380
MS.gene24374.t1 AT3G54950 27.569 399 258 11 21 414 98 470 1.40e-35 137
MS.gene24374.t1 AT4G29800 28.256 407 255 14 21 412 121 505 1.88e-35 137
MS.gene24374.t1 AT4G29800 28.186 408 255 14 21 412 121 506 2.74e-35 137
MS.gene24374.t1 AT2G39220 29.639 388 243 15 21 402 108 471 1.72e-34 134
MS.gene24374.t1 AT3G63200 28.707 317 192 10 23 333 32 320 1.10e-30 122

Find 83 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGCAATGTTCAAGGTAAA+AGG 0.209370 1.1:-3291893 None:intergenic
TTAATAAATTCTCACCAATT+TGG 0.220880 1.1:-3293994 None:intergenic
TGATAATTACCTTCGAATTC+AGG 0.242193 1.1:+3293751 MS.gene24374:CDS
CTGCTTTGTTACTTCATTCA+TGG 0.276097 1.1:-3293480 None:intergenic
TCCAGAGTCAATTTAGAAAA+TGG 0.281008 1.1:+3294028 MS.gene24374:CDS
TTGAAGAAACTATGCCAAAT+TGG 0.298509 1.1:+3293980 MS.gene24374:CDS
GTAAAAGGGCTTGATATCTT+TGG 0.318803 1.1:-3291878 None:intergenic
GCTTCAGAGATCCCCTTGTT+TGG 0.326246 1.1:+3292643 MS.gene24374:intron
TACTCAATCAAGTGGTGATA+TGG 0.328294 1.1:+3293685 MS.gene24374:CDS
CCATATTCCAGAGGCTTGAT+TGG 0.331569 1.1:-3293530 None:intergenic
CCAATCAAGCCTCTGGAATA+TGG 0.340675 1.1:+3293530 MS.gene24374:CDS
GTAACCATTCTTAGTATTGA+TGG 0.353477 1.1:+3290843 MS.gene24374:CDS
ATTCCTTGAATCTCACCTTC+AGG 0.368436 1.1:+3290905 MS.gene24374:CDS
CCAAATGGGGATTATTAGAT+TGG 0.382105 1.1:+3293624 MS.gene24374:CDS
TGCACAAATGGCAGCCAAAT+GGG 0.384292 1.1:+3293610 MS.gene24374:CDS
TTGGTTTCTCCGGTTGTTAG+TGG 0.394804 1.1:-3294061 None:intergenic
TTTCTTTCCAATCAAGCCTC+TGG 0.407655 1.1:+3293523 MS.gene24374:CDS
CCAATCTAATAATCCCCATT+TGG 0.412692 1.1:-3293624 None:intergenic
TGAGAATTTATTAAAGAAAC+CGG 0.414005 1.1:+3294003 MS.gene24374:CDS
AGCATCTTCATTGGTTTCTC+CGG 0.415887 1.1:-3294071 None:intergenic
GGCTTGATTGGAAAGAAATC+AGG 0.418966 1.1:-3293518 None:intergenic
CTGATCATTTCAATAGGCAC+TGG 0.431825 1.1:+3293560 MS.gene24374:CDS
TCTTGCCTCTACTTGTGTGT+GGG 0.432968 1.1:-3294262 None:intergenic
CCTCTTGAGAGCATCTTCAT+TGG 0.439200 1.1:-3294080 None:intergenic
ATATTAATTACCTATGTTGT+GGG 0.443069 1.1:-3291924 None:intergenic
GCAAAGGTAATGAGATCTCT+TGG 0.450334 1.1:+3292103 MS.gene24374:CDS
CTGCACAAATGGCAGCCAAA+TGG 0.451475 1.1:+3293609 MS.gene24374:CDS
ACAAATAAAGATCAGGAAGC+TGG 0.460216 1.1:+3292734 MS.gene24374:CDS
AGGAATTCAATAATTGCAGC+AGG 0.463149 1.1:-3290888 None:intergenic
GGGCAATGTTCAAGGTAAAA+GGG 0.470464 1.1:-3291892 None:intergenic
TAACCATTCTTAGTATTGAT+GGG 0.470961 1.1:+3290844 MS.gene24374:CDS
GAGGAGTTCAATCTCATTGA+TGG 0.474688 1.1:+3292764 MS.gene24374:CDS
CTTGGAGGACCCAAATATGA+TGG 0.485178 1.1:+3292121 MS.gene24374:CDS
TATATTAATTACCTATGTTG+TGG 0.490009 1.1:-3291925 None:intergenic
CAAGTTGTTAGAGAGAAACT+TGG 0.490786 1.1:+3292157 MS.gene24374:CDS
TTATTTGTGAAGTTGTGAGC+AGG 0.494731 1.1:-3292719 None:intergenic
TTGTGAGCAGGGAGATAAGT+AGG 0.496729 1.1:-3292707 None:intergenic
TGGTGTTTGCGCAAATAATC+CGG 0.497493 1.1:+3292787 MS.gene24374:CDS
CAAGTAGAGGCAAGAAAGCC+CGG 0.498544 1.1:+3294270 MS.gene24374:CDS
CAATAATTGCAGCAGGGATG+AGG 0.499347 1.1:-3290881 None:intergenic
GGAGAGGTTCACTGCACAAA+TGG 0.505314 1.1:+3293598 MS.gene24374:CDS
CAACTTCACAAATAAAGATC+AGG 0.505940 1.1:+3292727 MS.gene24374:CDS
TTCTTGCCTCTACTTGTGTG+TGG 0.506302 1.1:-3294263 None:intergenic
TCTCTCTAACAACTTGATGA+AGG 0.508522 1.1:-3292150 None:intergenic
TCTAAATTGACTCTGGAGAC+CGG 0.508962 1.1:-3294022 None:intergenic
TGATAAGATGAGAAAATGAT+TGG 0.523309 1.1:-3292247 None:intergenic
ATACCTGAAGGTGAGATTCA+AGG 0.523660 1.1:-3290908 None:intergenic
TTACCAAGTTCCCATAAGTA+GGG 0.536098 1.1:-3290824 None:intergenic
GTTACCAAGTTCCCATAAGT+AGG 0.539081 1.1:-3290825 None:intergenic
GTGATCTCAGGAACAAGTAC+AGG 0.541512 1.1:+3291796 MS.gene24374:CDS
ATGCAGGATGATACATTGAC+AGG 0.541552 1.1:+3293920 MS.gene24374:intron
TGAATCATGAAACTAGATGC+CGG 0.546406 1.1:-3294289 None:intergenic
TTACATAAAATTTCGATGGA+GGG 0.558119 1.1:+3290768 None:intergenic
GAATCATGAAACTAGATGCC+GGG 0.560416 1.1:-3294288 None:intergenic
TTAGATTGGCTAACACATAG+TGG 0.560851 1.1:+3293638 MS.gene24374:CDS
TGATCATTTCAATAGGCACT+GGG 0.562419 1.1:+3293561 MS.gene24374:CDS
TATTTGTGAAGTTGTGAGCA+GGG 0.563364 1.1:-3292718 None:intergenic
CTTGCCTCTACTTGTGTGTG+GGG 0.564230 1.1:-3294261 None:intergenic
AACCATTCTTAGTATTGATG+GGG 0.567798 1.1:+3290845 MS.gene24374:CDS
CAAAGTCTTGATGTCAAATG+TGG 0.569923 1.1:-3292221 None:intergenic
ATCTGTGTGCAGGAGTTGGA+TGG 0.573566 1.1:+3291742 MS.gene24374:intron
TTCTTCAGTAGACATTGCTA+CGG 0.581643 1.1:+3293949 MS.gene24374:CDS
TTTATCTGGAGCAGCTAACA+TGG 0.585474 1.1:-3291833 None:intergenic
GAAAGTTTAGCATCCAAACA+AGG 0.590523 1.1:-3292656 None:intergenic
TCAGGAAGCTGGAAAAGAAG+AGG 0.603502 1.1:+3292745 MS.gene24374:CDS
TTCAGTAGACATTGCTACGG+AGG 0.603616 1.1:+3293952 MS.gene24374:CDS
CCAATGAAGATGCTCTCAAG+AGG 0.607291 1.1:+3294080 MS.gene24374:CDS
AGTTGGATGGTGAAGATGCA+AGG 0.613978 1.1:+3291755 MS.gene24374:CDS
AAAGTTTAGCATCCAAACAA+GGG 0.615469 1.1:-3292655 None:intergenic
AGATCCCCACACACAAGTAG+AGG 0.617675 1.1:+3294257 MS.gene24374:CDS
GCACAAATGGCAGCCAAATG+GGG 0.620024 1.1:+3293611 MS.gene24374:CDS
AAGGTAATGAGATCTCTTGG+AGG 0.632690 1.1:+3292106 MS.gene24374:CDS
TACCAAGTTCCCATAAGTAG+GGG 0.646419 1.1:-3290823 None:intergenic
ATCTCAGGAACAAGTACAGG+AGG 0.646501 1.1:+3291799 MS.gene24374:CDS
ACCATTCTTAGTATTGATGG+GGG 0.646720 1.1:+3290846 MS.gene24374:CDS
TGGTGCGACACTATTAGCAA+AGG 0.647189 1.1:+3292087 MS.gene24374:CDS
GGAATTCAATAATTGCAGCA+GGG 0.658810 1.1:-3290887 None:intergenic
GAGTTCAATCTCATTGATGG+TGG 0.662016 1.1:+3292767 MS.gene24374:CDS
AAATGTGGGAACAACAATGT+TGG 0.662239 1.1:-3292206 None:intergenic
AAGTTTAGCATCCAAACAAG+GGG 0.668793 1.1:-3292654 None:intergenic
ACCAAGTTCCCATAAGTAGG+GGG 0.679072 1.1:-3290822 None:intergenic
AAAGTCTTGATGTCAAATGT+GGG 0.692840 1.1:-3292220 None:intergenic
AGAAAACGACCATATTCCAG+AGG 0.710413 1.1:-3293539 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG - chr1.1:3293789-3293808 None:intergenic 0.0%
!!! TAATTTTTTTATATATATAA+TGG + chr1.1:3292298-3292317 MS.gene24374:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTTA+TGG + chr1.1:3293792-3293811 MS.gene24374:intron 0.0%
!! GACAAAATATATAATTTATT+TGG - chr1.1:3292550-3292569 None:intergenic 10.0%
!! TTCAAATAATAAAGTAATAT+TGG - chr1.1:3291701-3291720 None:intergenic 10.0%
!!! AAAAAAAAAAAAAAAGGTAT+AGG - chr1.1:3293784-3293803 None:intergenic 10.0%
!!! TCTAAAAAATAAGTTTTTAT+TGG + chr1.1:3292043-3292062 MS.gene24374:intron 10.0%
!! TAAATTAATTAGTTGTTGAT+TGG + chr1.1:3292831-3292850 MS.gene24374:intron 15.0%
!! TGATGTACAATATATATTAA+TGG - chr1.1:3293853-3293872 None:intergenic 15.0%
!! TTGTTTATTTATATATTCGT+TGG - chr1.1:3292913-3292932 None:intergenic 15.0%
!!! TAATTTATGTTTATTTTTCG+TGG - chr1.1:3291514-3291533 None:intergenic 15.0%
!!! TCATTTTATCTATATGTTTT+AGG - chr1.1:3291420-3291439 None:intergenic 15.0%
!!! TTTTTTTTTTTTATGGTAGT+AGG + chr1.1:3293799-3293818 MS.gene24374:intron 15.0%
!! AGATTTAACAGTTTATACAA+CGG + chr1.1:3291378-3291397 MS.gene24374:intron 20.0%
!! ATATTAATTACCTATGTTGT+GGG - chr1.1:3291927-3291946 None:intergenic 20.0%
!! ATTGTTGCACAATTATAATT+TGG - chr1.1:3294149-3294168 None:intergenic 20.0%
!! ATTTATTATGCAAACTATCT+TGG + chr1.1:3291239-3291258 MS.gene24374:intron 20.0%
!! CATATATATAATATACCTGA+AGG - chr1.1:3290923-3290942 None:intergenic 20.0%
!! CTTCTATTTGTAATTATTTG+AGG + chr1.1:3291980-3291999 MS.gene24374:intron 20.0%
!! TATATTAATTACCTATGTTG+TGG - chr1.1:3291928-3291947 None:intergenic 20.0%
!! TATTCTATTCTAATACATTC+AGG + chr1.1:3294192-3294211 MS.gene24374:intron 20.0%
!! TCAAAATTTGTATTATGCAA+TGG + chr1.1:3292977-3292996 MS.gene24374:intron 20.0%
!! TGAGAATTTATTAAAGAAAC+CGG + chr1.1:3294003-3294022 MS.gene24374:CDS 20.0%
!! TGAGTAAAAACATCAATTAA+GGG - chr1.1:3293671-3293690 None:intergenic 20.0%
!! TTAAGATTAATTAGTAGAGA+TGG + chr1.1:3294106-3294125 MS.gene24374:intron 20.0%
!! TTAATAAATTCTCACCAATT+TGG - chr1.1:3293997-3294016 None:intergenic 20.0%
!! TTCAAAAATAAAAGACAAAG+TGG - chr1.1:3293025-3293044 None:intergenic 20.0%
!! TTGAGTAAAAACATCAATTA+AGG - chr1.1:3293672-3293691 None:intergenic 20.0%
!! TTGTTGCACAATTATAATTT+GGG - chr1.1:3294148-3294167 None:intergenic 20.0%
!!! AAAAAAAAGTGTCCTTTTTT+AGG + chr1.1:3291304-3291323 MS.gene24374:intron 20.0%
!!! AAAAAAAGTGTCCTTTTTTA+GGG + chr1.1:3291305-3291324 MS.gene24374:intron 20.0%
!!! ATGTATTTTAAATCCACAAT+TGG - chr1.1:3292331-3292350 None:intergenic 20.0%
!!! ATTTCAAACAATTTTAGTCT+AGG - chr1.1:3292616-3292635 None:intergenic 20.0%
!!! CTTTGAAATAAAACTATTGT+TGG - chr1.1:3292587-3292606 None:intergenic 20.0%
!!! GAAAGTTTTTATATGTAAGT+TGG + chr1.1:3291179-3291198 MS.gene24374:intron 20.0%
!!! GGTAAAACTTTTTACATTAA+CGG + chr1.1:3293262-3293281 MS.gene24374:intron 20.0%
!!! TTGTTTTCTTTTTGCATAAA+TGG + chr1.1:3291069-3291088 MS.gene24374:intron 20.0%
!!! TTTGTTATTTTTTATGATCC+AGG + chr1.1:3293448-3293467 MS.gene24374:intron 20.0%
! AATTGATTATTTGCACATAC+CGG - chr1.1:3292809-3292828 None:intergenic 25.0%
! ACAAAAAATTCCCCTAAAAA+AGG - chr1.1:3291319-3291338 None:intergenic 25.0%
! AGTTTAGTTAAGAATCGTTT+GGG + chr1.1:3292444-3292463 MS.gene24374:intron 25.0%
! CATACATCCATAATGTAATT+GGG - chr1.1:3293075-3293094 None:intergenic 25.0%
! TAACAAAATCAACAAAATGC+AGG + chr1.1:3293904-3293923 MS.gene24374:intron 25.0%
! TAGCAAAAGAAATTTAGAGA+TGG + chr1.1:3291532-3291551 MS.gene24374:intron 25.0%
! TAGTTTAGTTAAGAATCGTT+TGG + chr1.1:3292443-3292462 MS.gene24374:intron 25.0%
! TGAAGAAAGAAACTCATATA+AGG + chr1.1:3293359-3293378 MS.gene24374:intron 25.0%
! TGATAAGATGAGAAAATGAT+TGG - chr1.1:3292250-3292269 None:intergenic 25.0%
! TTAAAATTCGAACTCTAAGT+AGG - chr1.1:3290977-3290996 None:intergenic 25.0%
!! AATCATTTTCTCATCTTATC+AGG + chr1.1:3292249-3292268 MS.gene24374:CDS 25.0%
!! AGGTATTTTCCATCATATTT+GGG - chr1.1:3292133-3292152 None:intergenic 25.0%
!! TATGTTGTGGGAAAATTTTA+GGG - chr1.1:3291915-3291934 None:intergenic 25.0%
!! TCTTTTGTTCTCTCAAAAAA+AGG + chr1.1:3291338-3291357 MS.gene24374:intron 25.0%
!!! AAAAAAGTGTCCTTTTTTAG+GGG + chr1.1:3291306-3291325 MS.gene24374:intron 25.0%
!!! AAGGTATTTTCCATCATATT+TGG - chr1.1:3292134-3292153 None:intergenic 25.0%
!!! ATTGGTTCAATTTTTTGTAG+AGG + chr1.1:3292061-3292080 MS.gene24374:intron 25.0%
!!! GATGTATGCACTTTTTATTT+TGG + chr1.1:3293087-3293106 MS.gene24374:intron 25.0%
!!! TAACCATTCTTAGTATTGAT+GGG + chr1.1:3290844-3290863 MS.gene24374:CDS 25.0%
!!! TGAAAGTACCTTGTATATAT+TGG + chr1.1:3290941-3290960 MS.gene24374:intron 25.0%
!!! TGAGGAATTCAAGTTTTTTA+TGG + chr1.1:3292013-3292032 MS.gene24374:intron 25.0%
!!! TTTATTTGGTCTTAAAACTG+TGG - chr1.1:3292536-3292555 None:intergenic 25.0%
AAAGTCTTGATGTCAAATGT+GGG - chr1.1:3292223-3292242 None:intergenic 30.0%
AAAGTTTAGCATCCAAACAA+GGG - chr1.1:3292658-3292677 None:intergenic 30.0%
ACTAGATCCCAATTACATTA+TGG + chr1.1:3293065-3293084 MS.gene24374:intron 30.0%
CAAAAATACTTTCACAAGAG+AGG + chr1.1:3294219-3294238 MS.gene24374:CDS 30.0%
CAACTTCACAAATAAAGATC+AGG + chr1.1:3292727-3292746 MS.gene24374:CDS 30.0%
CTGAAACAATTATAGATCTC+AGG + chr1.1:3292489-3292508 MS.gene24374:intron 30.0%
GCATACATCCATAATGTAAT+TGG - chr1.1:3293076-3293095 None:intergenic 30.0%
GTATTATGCAATGGCATATA+TGG + chr1.1:3292986-3293005 MS.gene24374:intron 30.0%
TCAGACACTAACACTTAATA+GGG + chr1.1:3291466-3291485 MS.gene24374:intron 30.0%
TCCAGAGTCAATTTAGAAAA+TGG + chr1.1:3294028-3294047 MS.gene24374:CDS 30.0%
TGATAATTACCTTCGAATTC+AGG + chr1.1:3293751-3293770 MS.gene24374:CDS 30.0%
TTCAGACACTAACACTTAAT+AGG + chr1.1:3291465-3291484 MS.gene24374:intron 30.0%
TTGAAGAAACTATGCCAAAT+TGG + chr1.1:3293980-3293999 MS.gene24374:CDS 30.0%
TTGCACAATTATAATTTGGG+TGG - chr1.1:3294145-3294164 None:intergenic 30.0%
! AATTCAGTCACAGAATTTTG+CGG + chr1.1:3291575-3291594 MS.gene24374:intron 30.0%
! AGACAAAGTGGATTTAATCA+TGG - chr1.1:3293013-3293032 None:intergenic 30.0%
! ATTTGAGGTGTATATACTTG+AGG + chr1.1:3291995-3292014 MS.gene24374:intron 30.0%
! CGTTTTCTGATCATTTCAAT+AGG + chr1.1:3293554-3293573 MS.gene24374:CDS 30.0%
! CTAAAATTTTCCCACAACAT+AGG + chr1.1:3291914-3291933 MS.gene24374:CDS 30.0%
! CTATGTTGTGGGAAAATTTT+AGG - chr1.1:3291916-3291935 None:intergenic 30.0%
! GTAACCATTCTTAGTATTGA+TGG + chr1.1:3290843-3290862 MS.gene24374:CDS 30.0%
! TACCTTGTATATATTGGCTA+TGG + chr1.1:3290947-3290966 MS.gene24374:intron 30.0%
!! AACCATTCTTAGTATTGATG+GGG + chr1.1:3290845-3290864 MS.gene24374:CDS 30.0%
!! ACCATTTTCTAAATTGACTC+TGG - chr1.1:3294032-3294051 None:intergenic 30.0%
!! ACTGTGGTTTTTCTAAAGAT+AGG - chr1.1:3292520-3292539 None:intergenic 30.0%
!! GATGTTTTTACTCAATCAAG+TGG + chr1.1:3293677-3293696 MS.gene24374:CDS 30.0%
!! GTAAGTTGGTTCCATAATAA+TGG + chr1.1:3291193-3291212 MS.gene24374:intron 30.0%
!! TATGTTTATTTTTCGTGGCT+AGG - chr1.1:3291509-3291528 None:intergenic 30.0%
!!! AAATTTTAGGGCAATGTTCA+AGG - chr1.1:3291903-3291922 None:intergenic 30.0%
!!! AGTGGACGATTATTTTTATC+TGG - chr1.1:3291850-3291869 None:intergenic 30.0%
!!! GATTATTTTGATGTGATCTC+AGG + chr1.1:3291784-3291803 MS.gene24374:CDS 30.0%
!!! TCAATTTTTTGTAGAGGACT+TGG + chr1.1:3292067-3292086 MS.gene24374:intron 30.0%
AAATGTGGGAACAACAATGT+TGG - chr1.1:3292209-3292228 None:intergenic 35.0%
AAGTTTAGCATCCAAACAAG+GGG - chr1.1:3292657-3292676 None:intergenic 35.0%
ACAAATAAAGATCAGGAAGC+TGG + chr1.1:3292734-3292753 MS.gene24374:CDS 35.0%
AGCCATAGCCAATATATACA+AGG - chr1.1:3290952-3290971 None:intergenic 35.0%
AGGAATTCAATAATTGCAGC+AGG - chr1.1:3290891-3290910 None:intergenic 35.0%
ATATCTTTGGCAGCAAAAAG+TGG - chr1.1:3291868-3291887 None:intergenic 35.0%
CAAAGTCTTGATGTCAAATG+TGG - chr1.1:3292224-3292243 None:intergenic 35.0%
CAAGTTGTTAGAGAGAAACT+TGG + chr1.1:3292157-3292176 MS.gene24374:CDS 35.0%
CCAAATGGGGATTATTAGAT+TGG + chr1.1:3293624-3293643 MS.gene24374:CDS 35.0%
CCAATCTAATAATCCCCATT+TGG - chr1.1:3293627-3293646 None:intergenic 35.0%
GAAAGTTTAGCATCCAAACA+AGG - chr1.1:3292659-3292678 None:intergenic 35.0%
GGAATTCAATAATTGCAGCA+GGG - chr1.1:3290890-3290909 None:intergenic 35.0%
GTAAAAGGGCTTGATATCTT+TGG - chr1.1:3291881-3291900 None:intergenic 35.0%
GTCATGTTATTGAACTCAAG+TGG + chr1.1:3292413-3292432 MS.gene24374:intron 35.0%
GTTCCATAATAATGGCAGTA+GGG + chr1.1:3291201-3291220 MS.gene24374:intron 35.0%
TAATGGAATGTTGCCAATTG+TGG + chr1.1:3292315-3292334 MS.gene24374:intron 35.0%
TACTCAATCAAGTGGTGATA+TGG + chr1.1:3293685-3293704 MS.gene24374:CDS 35.0%
TATTTGTGAAGTTGTGAGCA+GGG - chr1.1:3292721-3292740 None:intergenic 35.0%
TCTCTCTAACAACTTGATGA+AGG - chr1.1:3292153-3292172 None:intergenic 35.0%
TGATCATTTCAATAGGCACT+GGG + chr1.1:3293561-3293580 MS.gene24374:CDS 35.0%
TGGCTAGGTTTATTAGTAGT+TGG - chr1.1:3291494-3291513 None:intergenic 35.0%
TTACCAAGTTCCCATAAGTA+GGG - chr1.1:3290827-3290846 None:intergenic 35.0%
TTATGCAAACTATCTTGGTG+AGG + chr1.1:3291244-3291263 MS.gene24374:intron 35.0%
TTATTTGTGAAGTTGTGAGC+AGG - chr1.1:3292722-3292741 None:intergenic 35.0%
TTCTTCAGTAGACATTGCTA+CGG + chr1.1:3293949-3293968 MS.gene24374:CDS 35.0%
! CTGCTTTGTTACTTCATTCA+TGG - chr1.1:3293483-3293502 None:intergenic 35.0%
! GGAATTTTACCTGAATTCGA+AGG - chr1.1:3293763-3293782 None:intergenic 35.0%
! TAGTGCAGCTACTTTATGAA+AGG + chr1.1:3291268-3291287 MS.gene24374:intron 35.0%
! TTAGATTGGCTAACACATAG+TGG + chr1.1:3293638-3293657 MS.gene24374:CDS 35.0%
!! AATTAAGTTGATCTGTGTGC+AGG + chr1.1:3291732-3291751 MS.gene24374:intron 35.0%
!! ACCATTCTTAGTATTGATGG+GGG + chr1.1:3290846-3290865 MS.gene24374:CDS 35.0%
AAATTCAGCCCCCTACTTAT+GGG + chr1.1:3290814-3290833 MS.gene24374:CDS 40.0%
AAGGTAATGAGATCTCTTGG+AGG + chr1.1:3292106-3292125 MS.gene24374:CDS 40.0%
AGAAAACGACCATATTCCAG+AGG - chr1.1:3293542-3293561 None:intergenic 40.0%
AGGGCAATGTTCAAGGTAAA+AGG - chr1.1:3291896-3291915 None:intergenic 40.0%
ATACCTGAAGGTGAGATTCA+AGG - chr1.1:3290911-3290930 None:intergenic 40.0%
ATGCAGGATGATACATTGAC+AGG + chr1.1:3293920-3293939 MS.gene24374:intron 40.0%
ATGGTAGTAGGAGTCGAATT+CGG + chr1.1:3293811-3293830 MS.gene24374:intron 40.0%
ATTCCTTGAATCTCACCTTC+AGG + chr1.1:3290905-3290924 MS.gene24374:CDS 40.0%
CATCCCTACTGCCATTATTA+TGG - chr1.1:3291207-3291226 None:intergenic 40.0%
CTGATCATTTCAATAGGCAC+TGG + chr1.1:3293560-3293579 MS.gene24374:CDS 40.0%
GAGGAGTTCAATCTCATTGA+TGG + chr1.1:3292764-3292783 MS.gene24374:CDS 40.0%
GAGTTCAATCTCATTGATGG+TGG + chr1.1:3292767-3292786 MS.gene24374:CDS 40.0%
GCAAAGGTAATGAGATCTCT+TGG + chr1.1:3292103-3292122 MS.gene24374:CDS 40.0%
GGCTTGATTGGAAAGAAATC+AGG - chr1.1:3293521-3293540 None:intergenic 40.0%
GGGCAATGTTCAAGGTAAAA+GGG - chr1.1:3291895-3291914 None:intergenic 40.0%
GGTTCCATAATAATGGCAGT+AGG + chr1.1:3291200-3291219 MS.gene24374:intron 40.0%
GTTACCAAGTTCCCATAAGT+AGG - chr1.1:3290828-3290847 None:intergenic 40.0%
TACCAAGTTCCCATAAGTAG+GGG - chr1.1:3290826-3290845 None:intergenic 40.0%
TAGATATAGCGCAAGCTAAG+TGG - chr1.1:3293877-3293896 None:intergenic 40.0%
TATTAATGGCGTAACCTCTG+AGG - chr1.1:3293839-3293858 None:intergenic 40.0%
TCCCCCATCAATACTAAGAA+TGG - chr1.1:3290850-3290869 None:intergenic 40.0%
TGGTGTTTGCGCAAATAATC+CGG + chr1.1:3292787-3292806 MS.gene24374:CDS 40.0%
TTTCTTTCCAATCAAGCCTC+TGG + chr1.1:3293523-3293542 MS.gene24374:CDS 40.0%
! AAGATTGTTGTGCGCTGATA+TGG + chr1.1:3293241-3293260 MS.gene24374:intron 40.0%
! CATTTTGAGCCACTAACAAC+CGG + chr1.1:3294052-3294071 MS.gene24374:CDS 40.0%
! TCTAAATTGACTCTGGAGAC+CGG - chr1.1:3294025-3294044 None:intergenic 40.0%
! TTTATCTGGAGCAGCTAACA+TGG - chr1.1:3291836-3291855 None:intergenic 40.0%
!! AGCATCTTCATTGGTTTCTC+CGG - chr1.1:3294074-3294093 None:intergenic 40.0%
!! ATTCTTAGTATTGATGGGGG+AGG + chr1.1:3290849-3290868 MS.gene24374:CDS 40.0%
!! TATTGATGGGGGAGGTATTA+GGG + chr1.1:3290857-3290876 MS.gene24374:CDS 40.0%
ACCAAGTTCCCATAAGTAGG+GGG - chr1.1:3290825-3290844 None:intergenic 45.0%
AGTTGGATGGTGAAGATGCA+AGG + chr1.1:3291755-3291774 MS.gene24374:CDS 45.0%
ATCTCAGGAACAAGTACAGG+AGG + chr1.1:3291799-3291818 MS.gene24374:CDS 45.0%
CAAATTCAGCCCCCTACTTA+TGG + chr1.1:3290813-3290832 MS.gene24374:CDS 45.0%
CAATAATTGCAGCAGGGATG+AGG - chr1.1:3290884-3290903 None:intergenic 45.0%
CACTGGGACTGCAAAAAATG+AGG + chr1.1:3293577-3293596 MS.gene24374:CDS 45.0%
CATTCATGGCAACTAAAGCC+TGG - chr1.1:3293469-3293488 None:intergenic 45.0%
CCAATGAAGATGCTCTCAAG+AGG + chr1.1:3294080-3294099 MS.gene24374:CDS 45.0%
CCATATTCCAGAGGCTTGAT+TGG - chr1.1:3293533-3293552 None:intergenic 45.0%
CTTGGAGGACCCAAATATGA+TGG + chr1.1:3292121-3292140 MS.gene24374:CDS 45.0%
GGACTGCAAAAAATGAGGAG+AGG + chr1.1:3293582-3293601 MS.gene24374:CDS 45.0%
GTGATCTCAGGAACAAGTAC+AGG + chr1.1:3291796-3291815 MS.gene24374:CDS 45.0%
TCAGGAAGCTGGAAAAGAAG+AGG + chr1.1:3292745-3292764 MS.gene24374:CDS 45.0%
TCTTGCCTCTACTTGTGTGT+GGG - chr1.1:3294265-3294284 None:intergenic 45.0%
TGCACAAATGGCAGCCAAAT+GGG + chr1.1:3293610-3293629 MS.gene24374:CDS 45.0%
TGGTGCGACACTATTAGCAA+AGG + chr1.1:3292087-3292106 MS.gene24374:CDS 45.0%
TTCAGTAGACATTGCTACGG+AGG + chr1.1:3293952-3293971 MS.gene24374:CDS 45.0%
TTCTTGCCTCTACTTGTGTG+TGG - chr1.1:3294266-3294285 None:intergenic 45.0%
TTGGTTTCTCCGGTTGTTAG+TGG - chr1.1:3294064-3294083 None:intergenic 45.0%
TTGTGAGCAGGGAGATAAGT+AGG - chr1.1:3292710-3292729 None:intergenic 45.0%
!! ATTGATGGGGGAGGTATTAG+GGG + chr1.1:3290858-3290877 MS.gene24374:CDS 45.0%
!! CCAATCAAGCCTCTGGAATA+TGG + chr1.1:3293530-3293549 MS.gene24374:CDS 45.0%
!! CCTCTTGAGAGCATCTTCAT+TGG - chr1.1:3294083-3294102 None:intergenic 45.0%
!! GTATTGATGGGGGAGGTATT+AGG + chr1.1:3290856-3290875 MS.gene24374:CDS 45.0%
!! ATTATTTAATTAATAATTGA+AGG + chr1.1:3293416-3293435 MS.gene24374:intron 5.0%
AGATCCCCACACACAAGTAG+AGG + chr1.1:3294257-3294276 MS.gene24374:CDS 50.0%
AGTCGAATTCGGTACCTCAG+AGG + chr1.1:3293822-3293841 MS.gene24374:intron 50.0%
ATCTGTGTGCAGGAGTTGGA+TGG + chr1.1:3291742-3291761 MS.gene24374:intron 50.0%
CAAGTAGAGGCAAGAAAGCC+CGG + chr1.1:3294270-3294289 MS.gene24374:CDS 50.0%
CTGCACAAATGGCAGCCAAA+TGG + chr1.1:3293609-3293628 MS.gene24374:CDS 50.0%
CTTGCCTCTACTTGTGTGTG+GGG - chr1.1:3294264-3294283 None:intergenic 50.0%
GCACAAATGGCAGCCAAATG+GGG + chr1.1:3293611-3293630 MS.gene24374:CDS 50.0%
GCTTCAGAGATCCCCTTGTT+TGG + chr1.1:3292643-3292662 MS.gene24374:intron 50.0%
GGAGAGGTTCACTGCACAAA+TGG + chr1.1:3293598-3293617 MS.gene24374:CDS 50.0%
GTTGATCTGTGTGCAGGAGT+TGG + chr1.1:3291738-3291757 MS.gene24374:intron 50.0%
GCCCCCTACTTATGGGAACT+TGG + chr1.1:3290821-3290840 MS.gene24374:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 3290783 3294307 3290783 ID=MS.gene24374
chr1.1 mRNA 3290783 3294307 3290783 ID=MS.gene24374.t1;Parent=MS.gene24374
chr1.1 exon 3290783 3290926 3290783 ID=MS.gene24374.t1.exon1;Parent=MS.gene24374.t1
chr1.1 CDS 3290783 3290926 3290783 ID=cds.MS.gene24374.t1;Parent=MS.gene24374.t1
chr1.1 exon 3291754 3291935 3291754 ID=MS.gene24374.t1.exon2;Parent=MS.gene24374.t1
chr1.1 CDS 3291754 3291935 3291754 ID=cds.MS.gene24374.t1;Parent=MS.gene24374.t1
chr1.1 exon 3292081 3292270 3292081 ID=MS.gene24374.t1.exon3;Parent=MS.gene24374.t1
chr1.1 CDS 3292081 3292270 3292081 ID=cds.MS.gene24374.t1;Parent=MS.gene24374.t1
chr1.1 exon 3292644 3292808 3292644 ID=MS.gene24374.t1.exon4;Parent=MS.gene24374.t1
chr1.1 CDS 3292644 3292808 3292644 ID=cds.MS.gene24374.t1;Parent=MS.gene24374.t1
chr1.1 exon 3293470 3293772 3293470 ID=MS.gene24374.t1.exon5;Parent=MS.gene24374.t1
chr1.1 CDS 3293470 3293772 3293470 ID=cds.MS.gene24374.t1;Parent=MS.gene24374.t1
chr1.1 exon 3293926 3294101 3293926 ID=MS.gene24374.t1.exon6;Parent=MS.gene24374.t1
chr1.1 CDS 3293926 3294101 3293926 ID=cds.MS.gene24374.t1;Parent=MS.gene24374.t1
chr1.1 exon 3294214 3294307 3294214 ID=MS.gene24374.t1.exon7;Parent=MS.gene24374.t1
chr1.1 CDS 3294214 3294307 3294214 ID=cds.MS.gene24374.t1;Parent=MS.gene24374.t1
Gene Sequence

>MS.gene24374

ATGGAGGGAGTCACAAATTTATCTGTTGAACAAATTCAGCCCCCTACTTATGGGAACTTGGTAACCATTCTTAGTATTGATGGGGGAGGTATTAGGGGCCTCATCCCTGCTGCAATTATTGAATTCCTTGAATCTCACCTTCAGGTATATTATATATATGAAAGTACCTTGTATATATTGGCTATGGCTAACCTACTTAGAGTTCGAATTTTAACTATACATACATACATACATAGATATATATATATATATATATATATATATATATATATATATATATAATTTTTTGTTTTCTTTTTGCATAAATGGATTTCTAGTTAAAAAAATATTTATAACATTTGCTAATTAGAGATGCTTGAGCGAATTGTTTAACTAAAGTGCTAATTTTATTACTATGAAAGTTTTTATATGTAAGTTGGTTCCATAATAATGGCAGTAGGGATGAGAGTAAACTCTATTTATTATGCAAACTATCTTGGTGAGGTTAGTGCAGCTACTTTATGAAAGGTTAGATCTAGAGAAAAAAAAAGTGTCCTTTTTTAGGGGAATTTTTTGTCTTTTGTTCTCTCAAAAAAAGGTTGTCTTTTGTCTCTCTAGATTTAACAGTTTATACAACGGCAGTATGAGTCTGAATCCTAAAACATATAGATAAAATGAATTTATAAGAGTGTTTTATACTTTCTTCAGACACTAACACTTAATAGGGAACCAACTACTAATAAACCTAGCCACGAAAAATAAACATAAATTAGCAAAAGAAATTTAGAGATGGAAATCGTGAAATTTCTATCTAATTCAGTCACAGAATTTTGCGGCAAAGAATTAGAGAGAAATTTCGTTTTTTCGTCACTAATTTTTTTTTTTCACAGTAGTGTATATTATTCGCTCAAAGAAATTAAATGATAATAATGTACTCCAATATTACTTTATTATTTGAAACTATATAATTAATTAAGTTGATCTGTGTGCAGGAGTTGGATGGTGAAGATGCAAGGCTTGCAGATTATTTTGATGTGATCTCAGGAACAAGTACAGGAGGTCTTGTAACTGCCATGTTAGCTGCTCCAGATAAAAATAATCGTCCACTTTTTGCTGCCAAAGATATCAAGCCCTTTTACCTTGAACATTGCCCTAAAATTTTCCCACAACATAGGTAATTAATATATATAATAATCATAAATGATATTTATTTATTTACTTCTATTTGTAATTATTTGAGGTGTATATACTTGAGGAATTCAAGTTTTTTATGGTTTCATATCTAAAAAATAAGTTTTTATTGGTTCAATTTTTTGTAGAGGACTTGGTGCGACACTATTAGCAAAGGTAATGAGATCTCTTGGAGGACCCAAATATGATGGAAAATACCTTCATCAAGTTGTTAGAGAGAAACTTGGAGACATTCGCTTGCATGAAACACTCACCAACATTGTTGTTCCCACATTTGACATCAAGACTTTGCAGCCAATCATTTTCTCATCTTATCAGGTTAATTTATTTCTTATGAGATTATATTAATTTTTTTATATATATAATGGAATGTTGCCAATTGTGGATTTAAAATACATAATCAGTTGTTTTAATTTTTGTTTTTAAGAAGATCAATTGTTTTAAATTAATTATATATTTAGTCATGTTATTGAACTCAAGTGGTTCACAATAGTTTAGTTAAGAATCGTTTGGGAGAACTTGATTTTTAATCTTAGCTGAAACAATTATAGATCTCAGGCTAAACCTATCTTTAGAAAAACCACAGTTTTAAGACCAAATAAATTATATATTTTGTCTTGCTTACTTTTTTCCAACAATAGTTTTATTTCAAAGATTAAACCTAGACTAAAATTGTTTGAAATTTATGCAGCTTCAGAGATCCCCTTGTTTGGATGCTAAACTTTCAGACATATGCATTAGCACTTCAGCTGCTCCTACTTATCTCCCTGCTCACAACTTCACAAATAAAGATCAGGAAGCTGGAAAAGAAGAGGAGTTCAATCTCATTGATGGTGGTGTTTGCGCAAATAATCCGGTATGTGCAAATAATCAATTAATAAATTAATTAGTTGTTGATTGGAAATTTTATTTTGAGTGTTTAACTTTTAATTAATTAATTAATAAATTAGTTATATGCCAACGAATATATAAATAAACAATTGCATTTCATATAATACATTCTCATAATGCGAACAAGTTGTTTTCAAAATTTGTATTATGCAATGGCATATATGGTCCATGATTAAATCCACTTTGTCTTTTATTTTTGAATAAAATATACAATTTGTCTTACTAGATCCCAATTACATTATGGATGTATGCACTTTTTATTTTGGATTTAAAGTGTAATTTTTTTTTACACTATCAATCGATTATAATTGTTTGATCATGAAAAATATTTTACTTTTATGATCTTAATTACTTTTTTTAAGCAAATGATTAATTACTTATAAACTCGCACATATGAAAGATTGTTGTGCGCTGATATGGTAAAACTTTTTACATTAACGGTGTATATAAATTAAACTCGTTTATTTTGCGACACATTTGTGTAATTACACGTATTTTACATTATAGTAAAAAGTTGAAGAAAGAAACTCATATAAGGTTTAGTAAAAAAAATTACACGAGAAAAATATTATATTATTTAATTAATAATTGAAGGTAAAACTAATTTGTTATTTTTTATGATCCAGGCTTTAGTTGCCATGAATGAAGTAACAAAGCAGATTATAAATCAAAGTCCTGATTTCTTTCCAATCAAGCCTCTGGAATATGGTCGTTTTCTGATCATTTCAATAGGCACTGGGACTGCAAAAAATGAGGAGAGGTTCACTGCACAAATGGCAGCCAAATGGGGATTATTAGATTGGCTAACACATAGTGGTTCTAATCCCTTAATTGATGTTTTTACTCAATCAAGTGGTGATATGGTCGATTTTCATTTATCTGCTGTCACTCAAGCTCTTCATTCAGCTGATAATTACCTTCGAATTCAGGTAAAATTCCTATACCTTTTTTTTTTTTTTTTTTTTTTATGGTAGTAGGAGTCGAATTCGGTACCTCAGAGGTTACGCCATTAATATATATTGTACATCAACCACTTAGCTTGCGCTATATCTAGTGATCATAACAAAATCAACAAAATGCAGGATGATACATTGACAGGAATAGATTCTTCAGTAGACATTGCTACGGAGGAGAACTTGAAGAAACTATGCCAAATTGGTGAGAATTTATTAAAGAAACCGGTCTCCAGAGTCAATTTAGAAAATGGTCATTTTGAGCCACTAACAACCGGAGAAACCAATGAAGATGCTCTCAAGAGGTAATTAAGATTAATTAGTAGAGATGGTACATTTTAATTACCACCCAAATTATAATTGTGCAACAATTATTATTATATTAATAACATATTTATTCTATTCTAATACATTCAGGCTTGCAAAAATACTTTCACAAGAGAGGAGACTTAGAGAAATGAGATCCCCACACACAAGTAGAGGCAAGAAAGCCCGGCATCTAGTTTCATGA

Protein sequence

>MS.gene24374.t1

MEGVTNLSVEQIQPPTYGNLVTILSIDGGGIRGLIPAAIIEFLESHLQELDGEDARLADYFDVISGTSTGGLVTAMLAAPDKNNRPLFAAKDIKPFYLEHCPKIFPQHRGLGATLLAKVMRSLGGPKYDGKYLHQVVREKLGDIRLHETLTNIVVPTFDIKTLQPIIFSSYQLQRSPCLDAKLSDICISTSAAPTYLPAHNFTNKDQEAGKEEEFNLIDGGVCANNPALVAMNEVTKQIINQSPDFFPIKPLEYGRFLIISIGTGTAKNEERFTAQMAAKWGLLDWLTHSGSNPLIDVFTQSSGDMVDFHLSAVTQALHSADNYLRIQDDTLTGIDSSVDIATEENLKKLCQIGENLLKKPVSRVNLENGHFEPLTTGETNEDALKRLAKILSQERRLREMRSPHTSRGKKARHLVS