Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27342.t1 | XP_013466057.1 | 96.9 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 4.40E-117 | 430.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27342.t1 | A0A072VE50 | 96.9 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 3.2e-117 | 430.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene27342 | 0.829055 | 6.38E-55 | -1.69E-46 |
| MS.gene049254 | MS.gene27342 | 0.803898 | 2.80E-49 | -1.69E-46 |
| MS.gene049271 | MS.gene27342 | 0.808165 | 3.54E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene27342 | 0.8058 | 1.12E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene27342 | 0.833454 | 5.28E-56 | -1.69E-46 |
| MS.gene049711 | MS.gene27342 | 0.819871 | 9.25E-53 | -1.69E-46 |
| MS.gene049824 | MS.gene27342 | 0.83397 | 3.93E-56 | -1.69E-46 |
| MS.gene049825 | MS.gene27342 | 0.831678 | 1.46E-55 | -1.69E-46 |
| MS.gene049850 | MS.gene27342 | 0.803921 | 2.77E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene27342 | 0.825147 | 5.49E-54 | -1.69E-46 |
| MS.gene050201 | MS.gene27342 | 0.820263 | 7.52E-53 | -1.69E-46 |
| MS.gene050241 | MS.gene27342 | 0.850992 | 1.19E-60 | -1.69E-46 |
| MS.gene050807 | MS.gene27342 | 0.803435 | 3.49E-49 | -1.69E-46 |
| MS.gene050901 | MS.gene27342 | 0.803053 | 4.19E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene27342 | 0.834876 | 2.33E-56 | -1.69E-46 |
| MS.gene051279 | MS.gene27342 | 0.840258 | 9.69E-58 | -1.69E-46 |
| MS.gene051594 | MS.gene27342 | 0.811018 | 8.64E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene27342 | 0.847195 | 1.35E-59 | -1.69E-46 |
| MS.gene051720 | MS.gene27342 | 0.856784 | 2.54E-62 | -1.69E-46 |
| MS.gene051744 | MS.gene27342 | 0.855892 | 4.65E-62 | -1.69E-46 |
| MS.gene051957 | MS.gene27342 | 0.817206 | 3.72E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene27342 | 0.819127 | 1.37E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene27342 | 0.821252 | 4.46E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene27342 | 0.802557 | 5.30E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene27342 | 0.80208 | 6.65E-49 | -1.69E-46 |
| MS.gene053054 | MS.gene27342 | -0.81624 | 6.12E-52 | -1.69E-46 |
| MS.gene053122 | MS.gene27342 | 0.806624 | 7.51E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene27342 | 0.846159 | 2.59E-59 | -1.69E-46 |
| MS.gene053226 | MS.gene27342 | 0.851473 | 8.68E-61 | -1.69E-46 |
| MS.gene053581 | MS.gene27342 | 0.800527 | 1.38E-48 | -1.69E-46 |
| MS.gene053597 | MS.gene27342 | 0.810756 | 9.84E-51 | -1.69E-46 |
| MS.gene053599 | MS.gene27342 | 0.852406 | 4.71E-61 | -1.69E-46 |
| MS.gene053883 | MS.gene27342 | 0.824261 | 8.88E-54 | -1.69E-46 |
| MS.gene054576 | MS.gene27342 | 0.809338 | 1.99E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene27342 | 0.849779 | 2.60E-60 | -1.69E-46 |
| MS.gene054651 | MS.gene27342 | 0.830974 | 2.17E-55 | -1.69E-46 |
| MS.gene055465 | MS.gene27342 | 0.817734 | 2.83E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene27342 | 0.837865 | 4.04E-57 | -1.69E-46 |
| MS.gene055468 | MS.gene27342 | 0.81406 | 1.87E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene27342 | 0.801575 | 8.44E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene27342 | 0.824258 | 8.90E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene27342 | -0.84427 | 8.39E-59 | -1.69E-46 |
| MS.gene055694 | MS.gene27342 | 0.80053 | 1.38E-48 | -1.69E-46 |
| MS.gene055778 | MS.gene27342 | 0.811124 | 8.19E-51 | -1.69E-46 |
| MS.gene055890 | MS.gene27342 | 0.802921 | 4.46E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene27342 | 0.810074 | 1.38E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene27342 | -0.812443 | 4.23E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene27342 | 0.843649 | 1.23E-58 | -1.69E-46 |
| MS.gene056308 | MS.gene27342 | 0.827549 | 1.47E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene27342 | 0.863122 | 3.12E-64 | -1.69E-46 |
| MS.gene057444 | MS.gene27342 | 0.812142 | 4.92E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene27342 | 0.837243 | 5.83E-57 | -1.69E-46 |
| MS.gene05894 | MS.gene27342 | 0.818689 | 1.72E-52 | -1.69E-46 |
| MS.gene059015 | MS.gene27342 | 0.839398 | 1.62E-57 | -1.69E-46 |
| MS.gene059084 | MS.gene27342 | 0.811866 | 5.65E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene27342 | 0.812739 | 3.64E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene27342 | 0.829601 | 4.70E-55 | -1.69E-46 |
| MS.gene060519 | MS.gene27342 | 0.846672 | 1.88E-59 | -1.69E-46 |
| MS.gene060521 | MS.gene27342 | 0.803668 | 3.12E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene27342 | 0.841604 | 4.30E-58 | -1.69E-46 |
| MS.gene060603 | MS.gene27342 | 0.820849 | 5.52E-53 | -1.69E-46 |
| MS.gene061266 | MS.gene27342 | 0.802605 | 5.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27342.t1 | MTR_1g021970 | 99.558 | 226 | 1 | 0 | 1 | 226 | 1 | 226 | 1.09e-167 | 461 |
| MS.gene27342.t1 | MTR_1g021970 | 99.115 | 226 | 1 | 1 | 1 | 226 | 1 | 225 | 3.71e-165 | 454 |
| MS.gene27342.t1 | MTR_3g111670 | 83.190 | 232 | 32 | 4 | 1 | 226 | 1 | 231 | 2.11e-135 | 379 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27342.t1 | AT1G19330 | 76.856 | 229 | 48 | 4 | 1 | 226 | 1 | 227 | 1.03e-110 | 318 |
| MS.gene27342.t1 | AT1G19330 | 71.489 | 235 | 56 | 6 | 1 | 226 | 1 | 233 | 4.62e-109 | 313 |
| MS.gene27342.t1 | AT1G19330 | 75.641 | 234 | 47 | 5 | 1 | 226 | 1 | 232 | 8.61e-109 | 313 |
| MS.gene27342.t1 | AT1G75060 | 69.907 | 216 | 61 | 4 | 11 | 223 | 17 | 231 | 4.84e-100 | 290 |
| MS.gene27342.t1 | AT1G75060 | 69.444 | 216 | 61 | 5 | 11 | 223 | 17 | 230 | 3.52e-98 | 286 |
| MS.gene27342.t1 | AT1G75060 | 69.143 | 175 | 50 | 4 | 11 | 182 | 17 | 190 | 3.71e-73 | 221 |
Find 58 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCAAAGTTGTTGTTAC+TGG | 0.247333 | 1.2:+2690486 | MS.gene27342:CDS |
| GAAGGTTGACTTGAGCAAAT+TGG | 0.273443 | 1.2:+2691823 | MS.gene27342:intron |
| CCTAATGATCTAAGCATTCT+TGG | 0.306623 | 1.2:-2691611 | None:intergenic |
| CATCTGGCATGGATCAGATA+TGG | 0.313436 | 1.2:+2691458 | MS.gene27342:CDS |
| AGCTGCTCTTTCGATGGGTT+TGG | 0.323968 | 1.2:-2691978 | None:intergenic |
| CCAAGAATGCTTAGATCATT+AGG | 0.330483 | 1.2:+2691611 | MS.gene27342:CDS |
| GATGAGTTGCAAGTTATTAG+AGG | 0.336175 | 1.2:+2692525 | MS.gene27342:CDS |
| TTGGTCTTGGTGGTTGGCAT+TGG | 0.389653 | 1.2:+2690565 | MS.gene27342:CDS |
| TCTTGGTGGTTGGCATTGGC+TGG | 0.391104 | 1.2:+2690569 | MS.gene27342:CDS |
| CTCTGTTGATTCACAGTCCA+AGG | 0.394816 | 1.2:+2691664 | MS.gene27342:CDS |
| TGTCTGCATTGTGGAGATAT+TGG | 0.404430 | 1.2:+2691849 | MS.gene27342:CDS |
| TGGAAATAACCGTACTAAAT+CGG | 0.406762 | 1.2:+2690506 | MS.gene27342:CDS |
| TCGGTTCTTGTTGGTCTTCG+TGG | 0.407495 | 1.2:+2690525 | MS.gene27342:CDS |
| TCAAAGCTGCAAAGAGGCTT+AGG | 0.412016 | 1.2:+2692553 | MS.gene27342:CDS |
| GGGGTCAATTTCTATGCCTC+AGG | 0.418506 | 1.2:+2691685 | MS.gene27342:CDS |
| GTTAAGAAAGCTGTTGGTCT+TGG | 0.432909 | 1.2:+2690552 | MS.gene27342:CDS |
| ATTGAAAATGTTGGAAGCAA+TGG | 0.458146 | 1.2:+2690377 | None:intergenic |
| ATTTCCAGTAACAACAACTT+TGG | 0.459498 | 1.2:-2690490 | None:intergenic |
| CGTACTAAATCGGTTCTTGT+TGG | 0.461204 | 1.2:+2690516 | MS.gene27342:CDS |
| AAGAAAGCTGTTGGTCTTGG+TGG | 0.462904 | 1.2:+2690555 | MS.gene27342:CDS |
| CATTCTTGGCCTTGATCTGT+AGG | 0.480531 | 1.2:-2691597 | None:intergenic |
| TTGAATTTGAAAATACCATC+TGG | 0.487944 | 1.2:+2691442 | MS.gene27342:CDS |
| CAGCTTCACTTCAATACCAT+TGG | 0.494520 | 1.2:-2691361 | None:intergenic |
| AGGCATAGAAATTGACCCCT+TGG | 0.495573 | 1.2:-2691681 | None:intergenic |
| CTACGAGCTGCTCTTTCGAT+GGG | 0.498457 | 1.2:-2691983 | None:intergenic |
| GTCATCGTCTTCCTCGAGAC+CGG | 0.501405 | 1.2:-2691418 | None:intergenic |
| TCTACGAGCTGCTCTTTCGA+TGG | 0.503645 | 1.2:-2691984 | None:intergenic |
| TCTGTTGATTCACAGTCCAA+GGG | 0.503809 | 1.2:+2691665 | MS.gene27342:CDS |
| CACAAAAGTCCTACAGATCA+AGG | 0.510418 | 1.2:+2691588 | MS.gene27342:CDS |
| ATCTGGCATGGATCAGATAT+GGG | 0.529761 | 1.2:+2691459 | MS.gene27342:CDS |
| TTCTATGCCTCAGGGGTGGA+CGG | 0.534012 | 1.2:+2691694 | MS.gene27342:CDS |
| AGTGTGATTGAACCACCAAC+CGG | 0.537912 | 1.2:+2691399 | MS.gene27342:CDS |
| GATCATTAGGATCATCTCAC+AGG | 0.547105 | 1.2:+2691624 | MS.gene27342:CDS |
| TCAGAGGCATTTCATGTCGC+AGG | 0.548273 | 1.2:+2692013 | MS.gene27342:CDS |
| AAGCTGCAAAGAGGCTTAGG+AGG | 0.549495 | 1.2:+2692556 | MS.gene27342:CDS |
| TTTGAAAATACCATCTGGCA+TGG | 0.557029 | 1.2:+2691447 | MS.gene27342:CDS |
| CAACAAGAACCGATTTAGTA+CGG | 0.559704 | 1.2:-2690515 | None:intergenic |
| ATATTGGCGACACTTCAATC+TGG | 0.569350 | 1.2:+2691865 | MS.gene27342:CDS |
| AAGCTGTTGGTCTTGGTGGT+TGG | 0.570137 | 1.2:+2690559 | MS.gene27342:CDS |
| AATGTGCAGGTTCTTACCAA+TGG | 0.571599 | 1.2:+2691345 | MS.gene27342:intron |
| TCTTCCTCGAGACCGGTTGG+TGG | 0.579056 | 1.2:-2691411 | None:intergenic |
| GCAATGGAAAGTTCAGTGAA+TGG | 0.583506 | 1.2:+2690393 | MS.gene27342:CDS |
| GGGTCAATTTCTATGCCTCA+GGG | 0.589986 | 1.2:+2691686 | MS.gene27342:CDS |
| CATATCTGATCCATGCCAGA+TGG | 0.593266 | 1.2:-2691457 | None:intergenic |
| GGTGTTGTTAAGAAAGCTGT+TGG | 0.600631 | 1.2:+2690546 | MS.gene27342:CDS |
| TCGTCTTCCTCGAGACCGGT+TGG | 0.600634 | 1.2:-2691414 | None:intergenic |
| CAATTTCTATGCCTCAGGGG+TGG | 0.610942 | 1.2:+2691690 | MS.gene27342:CDS |
| TGAACCACCAACCGGTCTCG+AGG | 0.615263 | 1.2:+2691407 | MS.gene27342:CDS |
| GTATTGAAGTGAAGCTGCAG+AGG | 0.621922 | 1.2:+2691367 | MS.gene27342:CDS |
| GGACTGTGAATCAACAGAGA+AGG | 0.625537 | 1.2:-2691660 | None:intergenic |
| GATTTGTCAAAGCTGCAAAG+AGG | 0.634961 | 1.2:+2692547 | MS.gene27342:CDS |
| ATGGAAAGTTCAGTGAATGG+TGG | 0.641018 | 1.2:+2690396 | MS.gene27342:CDS |
| AGCTCGTAGATGTTGTTCAG+AGG | 0.657397 | 1.2:+2691997 | MS.gene27342:CDS |
| AATTGGAAATGTCTGCATTG+TGG | 0.659073 | 1.2:+2691840 | MS.gene27342:CDS |
| CTGTTGATTCACAGTCCAAG+GGG | 0.680824 | 1.2:+2691666 | MS.gene27342:CDS |
| ACAACAACTTTGGTATGACG+AGG | 0.693978 | 1.2:-2690480 | None:intergenic |
| ATATATACCGTCCACCCCTG+AGG | 0.713549 | 1.2:-2691701 | None:intergenic |
| GGTCAATTTCTATGCCTCAG+GGG | 0.731555 | 1.2:+2691687 | MS.gene27342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATACATTTTTAAGTAT+TGG | + | chr1.2:2690813-2690832 | MS.gene27342:intron | 10.0% |
| !!! | AGTTTTTTTCATATTTTATT+TGG | + | chr1.2:2691216-2691235 | MS.gene27342:intron | 10.0% |
| !!! | ATTATACATTTTTAAGTATT+GGG | + | chr1.2:2690814-2690833 | MS.gene27342:intron | 10.0% |
| !!! | CAAAATTAAATATTTTCAAA+TGG | + | chr1.2:2692340-2692359 | MS.gene27342:intron | 10.0% |
| !!! | TTGTTTTGAAAAAAAAAATT+GGG | + | chr1.2:2690840-2690859 | MS.gene27342:intron | 10.0% |
| !!! | TTTGAAAATATTTAATTTTG+AGG | - | chr1.2:2692340-2692359 | None:intergenic | 10.0% |
| !! | TACTTAAAAATGTATAATTC+AGG | - | chr1.2:2690812-2690831 | None:intergenic | 15.0% |
| !! | TAGGAAAATTTGAATAAAAT+TGG | - | chr1.2:2691077-2691096 | None:intergenic | 15.0% |
| !!! | ACTATTTTTATCATCAAAAT+TGG | + | chr1.2:2690612-2690631 | MS.gene27342:intron | 15.0% |
| !!! | AGATTTTTACTCTTTAAAAT+AGG | - | chr1.2:2691096-2691115 | None:intergenic | 15.0% |
| !!! | GTTGTTTTGAAAAAAAAAAT+TGG | + | chr1.2:2690839-2690858 | MS.gene27342:intron | 15.0% |
| !! | AATGGAGCTTAATTTATTTA+TGG | + | chr1.2:2690883-2690902 | MS.gene27342:intron | 20.0% |
| !! | TAAGCTTAAACATCAAAATT+GGG | + | chr1.2:2691936-2691955 | MS.gene27342:intron | 20.0% |
| !! | TTCAATTACTCAATTCATTT+GGG | + | chr1.2:2690781-2690800 | MS.gene27342:intron | 20.0% |
| !!! | ATTCAGTAAATTCTTTTACT+AGG | - | chr1.2:2692316-2692335 | None:intergenic | 20.0% |
| !!! | GAAAAAAAAAATTGGGTTTT+TGG | + | chr1.2:2690847-2690866 | MS.gene27342:intron | 20.0% |
| !!! | TTCAGTAAATTCTTTTACTA+GGG | - | chr1.2:2692315-2692334 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTGTAATTTGAA+TGG | + | chr1.2:2690865-2690884 | MS.gene27342:intron | 20.0% |
| ! | CTTCAATTACTCAATTCATT+TGG | + | chr1.2:2690780-2690799 | MS.gene27342:intron | 25.0% |
| ! | GCTTAATTTATTTATGGATC+TGG | + | chr1.2:2690889-2690908 | MS.gene27342:intron | 25.0% |
| ! | GTAAGCTTAAACATCAAAAT+TGG | + | chr1.2:2691935-2691954 | MS.gene27342:intron | 25.0% |
| ! | TATTGAAAATATCGTGTAGA+AGG | + | chr1.2:2691805-2691824 | MS.gene27342:intron | 25.0% |
| ! | TTGAATTTGAAAATACCATC+TGG | + | chr1.2:2691442-2691461 | MS.gene27342:CDS | 25.0% |
| !! | AGATGGTATTTTCAAATTCA+AGG | - | chr1.2:2691443-2691462 | None:intergenic | 25.0% |
| !! | TCAGTAAATTCTTTTACTAG+GGG | - | chr1.2:2692314-2692333 | None:intergenic | 25.0% |
| !!! | GATTTGTTGTGTATTTTGTT+TGG | + | chr1.2:2690935-2690954 | MS.gene27342:intron | 25.0% |
| !!! | GTTATTTGACGTATCTTTTT+TGG | + | chr1.2:2691895-2691914 | MS.gene27342:intron | 25.0% |
| !!! | TGTTTGGTTTTGAATTTTGA+TGG | + | chr1.2:2690951-2690970 | MS.gene27342:intron | 25.0% |
| !!! | TGTTTTGTTTATGAAGCAAA+TGG | + | chr1.2:2692503-2692522 | MS.gene27342:intron | 25.0% |
| !!! | TTTTGAATTTTGATGGTCAA+TGG | + | chr1.2:2690958-2690977 | MS.gene27342:intron | 25.0% |
| ATATGGGTGAGTTTCAATTT+GGG | + | chr1.2:2691475-2691494 | MS.gene27342:intron | 30.0% | |
| ATTTCCAGTAACAACAACTT+TGG | - | chr1.2:2690493-2690512 | None:intergenic | 30.0% | |
| CAACCAAATAACATTGTTAC+AGG | - | chr1.2:2692095-2692114 | None:intergenic | 30.0% | |
| GGTACATTATTGTTTGCATT+AGG | + | chr1.2:2692034-2692053 | MS.gene27342:intron | 30.0% | |
| GTTCCTGTAACAATGTTATT+TGG | + | chr1.2:2692089-2692108 | MS.gene27342:intron | 30.0% | |
| TCATACAATTGTTGCATGTA+TGG | + | chr1.2:2691298-2691317 | MS.gene27342:intron | 30.0% | |
| TGGAAATAACCGTACTAAAT+CGG | + | chr1.2:2690506-2690525 | MS.gene27342:CDS | 30.0% | |
| TTGTTTCATGAAAAATGTGC+AGG | + | chr1.2:2691332-2691351 | MS.gene27342:intron | 30.0% | |
| ! | AGTAAATTCTTTTACTAGGG+GGG | - | chr1.2:2692312-2692331 | None:intergenic | 30.0% |
| ! | CAGTAAATTCTTTTACTAGG+GGG | - | chr1.2:2692313-2692332 | None:intergenic | 30.0% |
| !! | CAACATTTTCAAAGCTTTGT+TGG | + | chr1.2:2690426-2690445 | MS.gene27342:CDS | 30.0% |
| AACATCAAAATTGGGTATGC+AGG | + | chr1.2:2691944-2691963 | MS.gene27342:intron | 35.0% | |
| AATTGGAAATGTCTGCATTG+TGG | + | chr1.2:2691840-2691859 | MS.gene27342:CDS | 35.0% | |
| ATTTGGTTGAACACTGTATG+TGG | + | chr1.2:2692106-2692125 | MS.gene27342:intron | 35.0% | |
| CACAAACAAAATCAGCAATC+GGG | - | chr1.2:2691538-2691557 | None:intergenic | 35.0% | |
| CCAAGAATGCTTAGATCATT+AGG | + | chr1.2:2691611-2691630 | MS.gene27342:CDS | 35.0% | |
| CCTAATGATCTAAGCATTCT+TGG | - | chr1.2:2691614-2691633 | None:intergenic | 35.0% | |
| GATATGGGTGAGTTTCAATT+TGG | + | chr1.2:2691474-2691493 | MS.gene27342:intron | 35.0% | |
| GATGAGTTGCAAGTTATTAG+AGG | + | chr1.2:2692525-2692544 | MS.gene27342:CDS | 35.0% | |
| GCACAAACAAAATCAGCAAT+CGG | - | chr1.2:2691539-2691558 | None:intergenic | 35.0% | |
| TATGTGGTTCCAATCAGATT+TGG | + | chr1.2:2692122-2692141 | MS.gene27342:intron | 35.0% | |
| TTTGAAAATACCATCTGGCA+TGG | + | chr1.2:2691447-2691466 | MS.gene27342:CDS | 35.0% | |
| ! | CAACAAGAACCGATTTAGTA+CGG | - | chr1.2:2690518-2690537 | None:intergenic | 35.0% |
| ! | CATACCAAAGTTGTTGTTAC+TGG | + | chr1.2:2690486-2690505 | MS.gene27342:CDS | 35.0% |
| !! | GATCTTTGCAACTCACTTTT+TGG | + | chr1.2:2690993-2691012 | MS.gene27342:intron | 35.0% |
| !!! | TGCAACTCACTTTTTGGTTT+TGG | + | chr1.2:2690999-2691018 | MS.gene27342:intron | 35.0% |
| AATCAGATTTGGATTCCTCG+TGG | + | chr1.2:2692133-2692152 | MS.gene27342:intron | 40.0% | |
| AATGTGCAGGTTCTTACCAA+TGG | + | chr1.2:2691345-2691364 | MS.gene27342:intron | 40.0% | |
| ACAACAACTTTGGTATGACG+AGG | - | chr1.2:2690483-2690502 | None:intergenic | 40.0% | |
| ACGAGGAATCCAAATCTGAT+TGG | - | chr1.2:2692134-2692153 | None:intergenic | 40.0% | |
| ATATTGGCGACACTTCAATC+TGG | + | chr1.2:2691865-2691884 | MS.gene27342:CDS | 40.0% | |
| ATCAAAATTGGGTATGCAGG+TGG | + | chr1.2:2691947-2691966 | MS.gene27342:intron | 40.0% | |
| ATCTGGCATGGATCAGATAT+GGG | + | chr1.2:2691459-2691478 | MS.gene27342:CDS | 40.0% | |
| ATGGAAAGTTCAGTGAATGG+TGG | + | chr1.2:2690396-2690415 | MS.gene27342:CDS | 40.0% | |
| CACAAAAGTCCTACAGATCA+AGG | + | chr1.2:2691588-2691607 | MS.gene27342:CDS | 40.0% | |
| CAGCAATCGGGAAAATCAAA+AGG | - | chr1.2:2691526-2691545 | None:intergenic | 40.0% | |
| CAGCTTCACTTCAATACCAT+TGG | - | chr1.2:2691364-2691383 | None:intergenic | 40.0% | |
| CATTCACAAAGTCGACACAT+TGG | + | chr1.2:2692170-2692189 | MS.gene27342:intron | 40.0% | |
| GATCATTAGGATCATCTCAC+AGG | + | chr1.2:2691624-2691643 | MS.gene27342:CDS | 40.0% | |
| GATTTGTCAAAGCTGCAAAG+AGG | + | chr1.2:2692547-2692566 | MS.gene27342:CDS | 40.0% | |
| GCAATGGAAAGTTCAGTGAA+TGG | + | chr1.2:2690393-2690412 | MS.gene27342:CDS | 40.0% | |
| TGTCTGCATTGTGGAGATAT+TGG | + | chr1.2:2691849-2691868 | MS.gene27342:CDS | 40.0% | |
| ! | CGTACTAAATCGGTTCTTGT+TGG | + | chr1.2:2690516-2690535 | MS.gene27342:CDS | 40.0% |
| ! | GTTAAGAAAGCTGTTGGTCT+TGG | + | chr1.2:2690552-2690571 | MS.gene27342:CDS | 40.0% |
| !! | GAAGGTTGACTTGAGCAAAT+TGG | + | chr1.2:2691823-2691842 | MS.gene27342:intron | 40.0% |
| !! | GGTGTTGTTAAGAAAGCTGT+TGG | + | chr1.2:2690546-2690565 | MS.gene27342:CDS | 40.0% |
| !! | TCTGTTGATTCACAGTCCAA+GGG | + | chr1.2:2691665-2691684 | MS.gene27342:CDS | 40.0% |
| AGCTCGTAGATGTTGTTCAG+AGG | + | chr1.2:2691997-2692016 | MS.gene27342:CDS | 45.0% | |
| AGGCATAGAAATTGACCCCT+TGG | - | chr1.2:2691684-2691703 | None:intergenic | 45.0% | |
| AGTGTGATTGAACCACCAAC+CGG | + | chr1.2:2691399-2691418 | MS.gene27342:CDS | 45.0% | |
| ATCAGCACATCAGTGATTGC+TGG | - | chr1.2:2692240-2692259 | None:intergenic | 45.0% | |
| CATATCTGATCCATGCCAGA+TGG | - | chr1.2:2691460-2691479 | None:intergenic | 45.0% | |
| CATCTGGCATGGATCAGATA+TGG | + | chr1.2:2691458-2691477 | MS.gene27342:CDS | 45.0% | |
| GCAAAATGCGAGCAAACCAA+AGG | - | chr1.2:2692200-2692219 | None:intergenic | 45.0% | |
| GGACTGTGAATCAACAGAGA+AGG | - | chr1.2:2691663-2691682 | None:intergenic | 45.0% | |
| GGGTCAATTTCTATGCCTCA+GGG | + | chr1.2:2691686-2691705 | MS.gene27342:CDS | 45.0% | |
| GGTCAATTTCTATGCCTCAG+GGG | + | chr1.2:2691687-2691706 | MS.gene27342:CDS | 45.0% | |
| GTATTGAAGTGAAGCTGCAG+AGG | + | chr1.2:2691367-2691386 | MS.gene27342:CDS | 45.0% | |
| TCAAAGCTGCAAAGAGGCTT+AGG | + | chr1.2:2692553-2692572 | MS.gene27342:CDS | 45.0% | |
| TCGACACATTGGTGAACCTT+TGG | + | chr1.2:2692181-2692200 | MS.gene27342:intron | 45.0% | |
| ! | GTGTGTAATTTGTGACCACG+AGG | - | chr1.2:2692151-2692170 | None:intergenic | 45.0% |
| ! | TCTTTTACTAGGGGGGAGAT+TGG | - | chr1.2:2692305-2692324 | None:intergenic | 45.0% |
| !! | AAGAAAGCTGTTGGTCTTGG+TGG | + | chr1.2:2690555-2690574 | MS.gene27342:CDS | 45.0% |
| !! | CATTCTTGGCCTTGATCTGT+AGG | - | chr1.2:2691600-2691619 | None:intergenic | 45.0% |
| !! | CTCTGTTGATTCACAGTCCA+AGG | + | chr1.2:2691664-2691683 | MS.gene27342:CDS | 45.0% |
| !! | CTGTTGATTCACAGTCCAAG+GGG | + | chr1.2:2691666-2691685 | MS.gene27342:CDS | 45.0% |
| !!! | CTTTTTTGGTTGCTGTTGCG+TGG | + | chr1.2:2691909-2691928 | MS.gene27342:intron | 45.0% |
| AAGCTGCAAAGAGGCTTAGG+AGG | + | chr1.2:2692556-2692575 | MS.gene27342:CDS | 50.0% | |
| ATATATACCGTCCACCCCTG+AGG | - | chr1.2:2691704-2691723 | None:intergenic | 50.0% | |
| CAATTTCTATGCCTCAGGGG+TGG | + | chr1.2:2691690-2691709 | MS.gene27342:CDS | 50.0% | |
| CTACGAGCTGCTCTTTCGAT+GGG | - | chr1.2:2691986-2692005 | None:intergenic | 50.0% | |
| CTGCATGAGATTGTGTCTGC+AGG | + | chr1.2:2692264-2692283 | MS.gene27342:intron | 50.0% | |
| GGGGTCAATTTCTATGCCTC+AGG | + | chr1.2:2691685-2691704 | MS.gene27342:CDS | 50.0% | |
| TACTAGGGGGGAGATTGGAA+TGG | - | chr1.2:2692300-2692319 | None:intergenic | 50.0% | |
| TCTACGAGCTGCTCTTTCGA+TGG | - | chr1.2:2691987-2692006 | None:intergenic | 50.0% | |
| ! | AGCTGCTCTTTCGATGGGTT+TGG | - | chr1.2:2691981-2692000 | None:intergenic | 50.0% |
| ! | GGGGGAGATTGGAATGGATT+TGG | - | chr1.2:2692294-2692313 | None:intergenic | 50.0% |
| !! | AAGCTGTTGGTCTTGGTGGT+TGG | + | chr1.2:2690559-2690578 | MS.gene27342:CDS | 50.0% |
| !! | TCAGAGGCATTTCATGTCGC+AGG | + | chr1.2:2692013-2692032 | MS.gene27342:CDS | 50.0% |
| !! | TCGGTTCTTGTTGGTCTTCG+TGG | + | chr1.2:2690525-2690544 | MS.gene27342:CDS | 50.0% |
| !! | TTGGTCTTGGTGGTTGGCAT+TGG | + | chr1.2:2690565-2690584 | MS.gene27342:CDS | 50.0% |
| GTCATCGTCTTCCTCGAGAC+CGG | - | chr1.2:2691421-2691440 | None:intergenic | 55.0% | |
| TTCTATGCCTCAGGGGTGGA+CGG | + | chr1.2:2691694-2691713 | MS.gene27342:CDS | 55.0% | |
| !! | TCTTGGTGGTTGGCATTGGC+TGG | + | chr1.2:2690569-2690588 | MS.gene27342:CDS | 55.0% |
| TCGTCTTCCTCGAGACCGGT+TGG | - | chr1.2:2691417-2691436 | None:intergenic | 60.0% | |
| TCTTCCTCGAGACCGGTTGG+TGG | - | chr1.2:2691414-2691433 | None:intergenic | 60.0% | |
| TGAACCACCAACCGGTCTCG+AGG | + | chr1.2:2691407-2691426 | MS.gene27342:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 2690384 | 2692593 | 2690384 | ID=MS.gene27342 |
| chr1.2 | mRNA | 2690384 | 2692593 | 2690384 | ID=MS.gene27342.t1;Parent=MS.gene27342 |
| chr1.2 | exon | 2690384 | 2690590 | 2690384 | ID=MS.gene27342.t1.exon1;Parent=MS.gene27342.t1 |
| chr1.2 | CDS | 2690384 | 2690590 | 2690384 | ID=cds.MS.gene27342.t1;Parent=MS.gene27342.t1 |
| chr1.2 | exon | 2691354 | 2691480 | 2691354 | ID=MS.gene27342.t1.exon2;Parent=MS.gene27342.t1 |
| chr1.2 | CDS | 2691354 | 2691480 | 2691354 | ID=cds.MS.gene27342.t1;Parent=MS.gene27342.t1 |
| chr1.2 | exon | 2691576 | 2691715 | 2691576 | ID=MS.gene27342.t1.exon3;Parent=MS.gene27342.t1 |
| chr1.2 | CDS | 2691576 | 2691715 | 2691576 | ID=cds.MS.gene27342.t1;Parent=MS.gene27342.t1 |
| chr1.2 | exon | 2691824 | 2691886 | 2691824 | ID=MS.gene27342.t1.exon4;Parent=MS.gene27342.t1 |
| chr1.2 | CDS | 2691824 | 2691886 | 2691824 | ID=cds.MS.gene27342.t1;Parent=MS.gene27342.t1 |
| chr1.2 | exon | 2691966 | 2692034 | 2691966 | ID=MS.gene27342.t1.exon5;Parent=MS.gene27342.t1 |
| chr1.2 | CDS | 2691966 | 2692034 | 2691966 | ID=cds.MS.gene27342.t1;Parent=MS.gene27342.t1 |
| chr1.2 | exon | 2692519 | 2692593 | 2692519 | ID=MS.gene27342.t1.exon6;Parent=MS.gene27342.t1 |
| chr1.2 | CDS | 2692519 | 2692593 | 2692519 | ID=cds.MS.gene27342.t1;Parent=MS.gene27342.t1 |
| Gene Sequence |
| Protein sequence |
