Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28027.t1 | KEH20777.1 | 97.6 | 330 | 4 | 1 | 1 | 330 | 1 | 326 | 3.60E-176 | 627.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28027.t1 | Q8L936 | 49.6 | 343 | 148 | 8 | 8 | 328 | 9 | 348 | 4.1e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28027.t1 | A0A072TTL4 | 97.6 | 330 | 4 | 1 | 1 | 330 | 1 | 326 | 2.6e-176 | 627.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene28027 | 0.807119 | 5.91E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene28027 | 0.838102 | 3.51E-57 | -1.69E-46 |
| MS.gene049983 | MS.gene28027 | 0.806624 | 7.52E-50 | -1.69E-46 |
| MS.gene050105 | MS.gene28027 | 0.821274 | 4.40E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene28027 | 0.80341 | 3.53E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene28027 | 0.826218 | 3.06E-54 | -1.69E-46 |
| MS.gene050962 | MS.gene28027 | 0.823491 | 1.35E-53 | -1.69E-46 |
| MS.gene051368 | MS.gene28027 | 0.803079 | 4.14E-49 | -1.69E-46 |
| MS.gene051924 | MS.gene28027 | -0.809804 | 1.58E-50 | -1.69E-46 |
| MS.gene05216 | MS.gene28027 | 0.818456 | 1.94E-52 | -1.69E-46 |
| MS.gene052534 | MS.gene28027 | 0.807531 | 4.83E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene28027 | 0.836194 | 1.08E-56 | -1.69E-46 |
| MS.gene052675 | MS.gene28027 | 0.834842 | 2.37E-56 | -1.69E-46 |
| MS.gene052677 | MS.gene28027 | 0.834106 | 3.63E-56 | -1.69E-46 |
| MS.gene053931 | MS.gene28027 | 0.800123 | 1.67E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene28027 | 0.810909 | 9.12E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene28027 | 0.811852 | 5.69E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene28027 | 0.807351 | 5.27E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene28027 | 0.807007 | 6.24E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene28027 | 0.804332 | 2.27E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene28027 | 0.805638 | 1.21E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene28027 | 0.803483 | 3.41E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene28027 | 0.802372 | 5.79E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene28027 | 0.815568 | 8.65E-52 | -1.69E-46 |
| MS.gene056779 | MS.gene28027 | 0.822699 | 2.06E-53 | -1.69E-46 |
| MS.gene057155 | MS.gene28027 | 0.818459 | 1.94E-52 | -1.69E-46 |
| MS.gene057156 | MS.gene28027 | -0.81099 | 8.76E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene28027 | 0.863224 | 2.90E-64 | -1.69E-46 |
| MS.gene058223 | MS.gene28027 | -0.817066 | 4.00E-52 | -1.69E-46 |
| MS.gene059161 | MS.gene28027 | 0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene28027 | 0.823478 | 1.36E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene28027 | 0.829826 | 4.14E-55 | -1.69E-46 |
| MS.gene060852 | MS.gene28027 | 0.826702 | 2.35E-54 | -1.69E-46 |
| MS.gene060932 | MS.gene28027 | 0.816599 | 5.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28027.t1 | MTR_8g089850 | 97.576 | 330 | 4 | 1 | 1 | 330 | 1 | 326 | 0.0 | 651 |
| MS.gene28027.t1 | MTR_3g086670 | 62.048 | 332 | 117 | 6 | 3 | 330 | 2 | 328 | 9.20e-136 | 389 |
| MS.gene28027.t1 | MTR_3g099670 | 38.699 | 292 | 168 | 5 | 9 | 292 | 10 | 298 | 1.08e-56 | 187 |
| MS.gene28027.t1 | MTR_3g106900 | 31.579 | 152 | 99 | 3 | 1 | 149 | 1 | 150 | 1.05e-15 | 78.2 |
| MS.gene28027.t1 | MTR_4g127440 | 25.490 | 255 | 173 | 7 | 31 | 274 | 34 | 282 | 1.22e-15 | 78.2 |
| MS.gene28027.t1 | MTR_4g115420 | 28.061 | 196 | 124 | 6 | 2 | 190 | 5 | 190 | 3.73e-13 | 70.5 |
| MS.gene28027.t1 | MTR_2g037980 | 27.811 | 169 | 110 | 4 | 31 | 190 | 34 | 199 | 4.41e-13 | 70.5 |
| MS.gene28027.t1 | MTR_8g008860 | 30.065 | 153 | 101 | 3 | 1 | 149 | 1 | 151 | 4.90e-13 | 70.1 |
| MS.gene28027.t1 | MTR_2g008170 | 29.221 | 154 | 101 | 4 | 1 | 149 | 1 | 151 | 2.91e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28027.t1 | AT4G40080 | 48.864 | 352 | 154 | 9 | 1 | 329 | 1 | 349 | 9.70e-98 | 293 |
| MS.gene28027.t1 | AT5G10410 | 34.799 | 273 | 150 | 10 | 7 | 262 | 6 | 267 | 4.58e-32 | 122 |
| MS.gene28027.t1 | AT5G65370 | 29.537 | 281 | 167 | 9 | 1 | 262 | 1 | 269 | 8.07e-24 | 99.4 |
| MS.gene28027.t1 | AT5G57200 | 24.111 | 253 | 177 | 6 | 31 | 274 | 34 | 280 | 8.87e-14 | 72.4 |
| MS.gene28027.t1 | AT4G32285 | 29.530 | 149 | 100 | 3 | 4 | 149 | 3 | 149 | 1.61e-13 | 71.6 |
| MS.gene28027.t1 | AT4G32285 | 29.530 | 149 | 100 | 3 | 4 | 149 | 3 | 149 | 1.61e-13 | 71.6 |
| MS.gene28027.t1 | AT2G25430 | 29.730 | 148 | 99 | 3 | 5 | 149 | 4 | 149 | 1.85e-13 | 71.6 |
| MS.gene28027.t1 | AT2G01600 | 25.197 | 254 | 174 | 7 | 31 | 274 | 34 | 281 | 3.64e-13 | 70.5 |
| MS.gene28027.t1 | AT4G25940 | 30.247 | 162 | 106 | 4 | 10 | 167 | 11 | 169 | 4.92e-13 | 70.1 |
| MS.gene28027.t1 | AT4G02650 | 29.655 | 145 | 95 | 3 | 10 | 149 | 10 | 152 | 1.03e-12 | 69.3 |
| MS.gene28027.t1 | AT1G03050 | 29.655 | 145 | 95 | 3 | 10 | 149 | 10 | 152 | 1.07e-11 | 66.2 |
| MS.gene28027.t1 | AT5G35200 | 28.947 | 152 | 102 | 4 | 10 | 157 | 15 | 164 | 2.50e-11 | 65.1 |
| MS.gene28027.t1 | AT5G35200 | 28.947 | 152 | 102 | 4 | 10 | 157 | 15 | 164 | 2.50e-11 | 65.1 |
| MS.gene28027.t1 | AT1G14910 | 30.233 | 129 | 85 | 4 | 31 | 157 | 34 | 159 | 3.83e-11 | 64.7 |
Find 102 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGAAGTGAATGAGTTTA+AGG | 0.146193 | 4.4:+11266508 | MS.gene28027:CDS |
| AGAGAGGGTGGTGATGATTT+TGG | 0.182988 | 4.4:+11266604 | MS.gene28027:CDS |
| TGTCTTTGATTATGTTTATT+AGG | 0.192374 | 4.4:-11265845 | None:intergenic |
| AGGTTAGGGTGTTTGGAATT+TGG | 0.217369 | 4.4:+11266533 | MS.gene28027:CDS |
| ATCTTGGGTTTCTTCTTTCT+TGG | 0.225064 | 4.4:+11266281 | MS.gene28027:CDS |
| CATGCGTGGTGGCGCGTAAA+AGG | 0.245276 | 4.4:-11265917 | None:intergenic |
| TAAGGAGAGGTTAGGGTGTT+TGG | 0.259878 | 4.4:+11266526 | MS.gene28027:CDS |
| GTTGAAGGAGTTTGATTCTT+TGG | 0.272817 | 4.4:+11266358 | MS.gene28027:CDS |
| TTGTTCATGTTCACTTGATC+TGG | 0.299217 | 4.4:-11266410 | None:intergenic |
| TTTATGTACTTCACGAATCT+TGG | 0.301033 | 4.4:+11266265 | MS.gene28027:CDS |
| GGTGGATGAGATAGTGAATT+TGG | 0.313395 | 4.4:+11266448 | MS.gene28027:CDS |
| AATGAGTTTAAGGAGAGGTT+AGG | 0.335488 | 4.4:+11266518 | MS.gene28027:CDS |
| GGTTGGAATGGAGGTGTATA+AGG | 0.337777 | 4.4:+11266673 | MS.gene28027:CDS |
| TGAATTTGGTTTGTGAAGAT+TGG | 0.373475 | 4.4:+11266462 | MS.gene28027:CDS |
| TTCGTGGGAACTTTCTTGTT+GGG | 0.385009 | 4.4:+11266211 | MS.gene28027:CDS |
| TTATGTACTTCACGAATCTT+GGG | 0.395648 | 4.4:+11266266 | MS.gene28027:CDS |
| GCGTAAAAGGGAGAGGGTGG+TGG | 0.403712 | 4.4:-11265904 | None:intergenic |
| GAGAGCAACGGCGGCGTTGT+TGG | 0.403727 | 4.4:-11266054 | None:intergenic |
| CTTCGTGGGAACTTTCTTGT+TGG | 0.404521 | 4.4:+11266210 | MS.gene28027:CDS |
| GGAAAAGGGTAGGGTGCATA+AGG | 0.410677 | 4.4:+11266694 | MS.gene28027:CDS |
| TTCTTTGGTGACACTGGTTG+AGG | 0.421524 | 4.4:+11266373 | MS.gene28027:CDS |
| TCAGTTCTCGTGATTCCCTT+TGG | 0.432756 | 4.4:+11266768 | MS.gene28027:CDS |
| ATTTGGAGAAGCTGTTGAAT+TGG | 0.433804 | 4.4:+11266550 | MS.gene28027:CDS |
| GAATTTGGTTTGTGAAGATT+GGG | 0.435014 | 4.4:+11266463 | MS.gene28027:CDS |
| TACAAACTGTGGTTTGTTGA+AGG | 0.449445 | 4.4:+11266343 | MS.gene28027:CDS |
| ACAGCAAGGGTTGTGGGATT+CGG | 0.450595 | 4.4:+11266631 | MS.gene28027:CDS |
| GGAGTCACAGCAAGGGTTGT+GGG | 0.451429 | 4.4:+11266625 | MS.gene28027:CDS |
| CCCTTTGGTTTCCCTCTGGA+AGG | 0.452637 | 4.4:+11266783 | MS.gene28027:CDS |
| TTATCTGTTTACCCTTCAAC+CGG | 0.456568 | 4.4:+11266137 | MS.gene28027:CDS |
| AATGGAGGTGTATAAGGAAA+AGG | 0.456653 | 4.4:+11266679 | MS.gene28027:CDS |
| GGTGAGAGAGGTGAAGGATA+AGG | 0.466786 | 4.4:+11266652 | MS.gene28027:CDS |
| TGCGCGTGAACCGTCGGTGG+AGG | 0.467786 | 4.4:-11265985 | None:intergenic |
| AAAGGGTAGGGTGCATAAGG+AGG | 0.471808 | 4.4:+11266697 | MS.gene28027:CDS |
| CAAGAAAGTTCCCACGAAGT+TGG | 0.471951 | 4.4:-11266206 | None:intergenic |
| GATTCCCTTTGGTTTCCCTC+TGG | 0.472352 | 4.4:+11266779 | MS.gene28027:CDS |
| AACTTTCTTGTTGGGTACGT+TGG | 0.475368 | 4.4:+11266219 | MS.gene28027:CDS |
| CTTGGAAAATCTTTGTGTGA+TGG | 0.477367 | 4.4:+11266299 | MS.gene28027:CDS |
| ATAAGGAGGGAAGAAAGTTA+AGG | 0.477466 | 4.4:+11266711 | MS.gene28027:CDS |
| ATGAGTTTAAGGAGAGGTTA+GGG | 0.479103 | 4.4:+11266519 | MS.gene28027:CDS |
| AGAGAGGTGAAGGATAAGGT+TGG | 0.486121 | 4.4:+11266656 | MS.gene28027:CDS |
| CTCCTTCTTAGAACTCCTCA+TGG | 0.486237 | 4.4:+11266016 | MS.gene28027:CDS |
| TGGAGTCACAGCAAGGGTTG+TGG | 0.486285 | 4.4:+11266624 | MS.gene28027:CDS |
| ATGCGTGGTGGCGCGTAAAA+GGG | 0.490324 | 4.4:-11265916 | None:intergenic |
| AAGGGTAGGGTGCATAAGGA+GGG | 0.491561 | 4.4:+11266698 | MS.gene28027:CDS |
| TCTTTGGTGACACTGGTTGA+GGG | 0.496012 | 4.4:+11266374 | MS.gene28027:CDS |
| GGTTTGTTGTTTGAAGAGGT+TGG | 0.498420 | 4.4:+11266571 | MS.gene28027:CDS |
| TAGTTTCTACCACCGGTTGA+AGG | 0.501899 | 4.4:-11266149 | None:intergenic |
| ATGGAGGTGTATAAGGAAAA+GGG | 0.504494 | 4.4:+11266680 | MS.gene28027:CDS |
| CTTTGGTGACACTGGTTGAG+GGG | 0.505079 | 4.4:+11266375 | MS.gene28027:CDS |
| GGTGAAGGATAAGGTTGGAA+TGG | 0.506608 | 4.4:+11266661 | MS.gene28027:CDS |
| CGTGGAGATATGTTTGTGGG+TGG | 0.510992 | 4.4:-11265955 | None:intergenic |
| TTTGTGGGTGGGAGGAGTGA+AGG | 0.525799 | 4.4:-11265943 | None:intergenic |
| AATTGGTTTGTTGTTTGAAG+AGG | 0.527047 | 4.4:+11266567 | MS.gene28027:CDS |
| GAGTTCTAAGAAGGAGGAAG+CGG | 0.537195 | 4.4:-11266009 | None:intergenic |
| GTTAAGATAGTTTCTACCAC+CGG | 0.540411 | 4.4:-11266156 | None:intergenic |
| GTTTGATTCTTTGGTGACAC+TGG | 0.541118 | 4.4:+11266367 | MS.gene28027:CDS |
| ACGCTCCTCTCCTCCACCGA+CGG | 0.543777 | 4.4:+11265975 | MS.gene28027:CDS |
| GAAGGATAAGGTTGGAATGG+AGG | 0.543884 | 4.4:+11266664 | MS.gene28027:CDS |
| CGTAAAAGGGAGAGGGTGGT+GGG | 0.545717 | 4.4:-11265903 | None:intergenic |
| TGGTGGCGCGTAAAAGGGAG+AGG | 0.552428 | 4.4:-11265911 | None:intergenic |
| GTCCATGAGGAGTTCTAAGA+AGG | 0.553775 | 4.4:-11266018 | None:intergenic |
| GGATTCGGTGAGAGAGGTGA+AGG | 0.555628 | 4.4:+11266646 | MS.gene28027:CDS |
| GGTTGGAGGAGTGTAAAGAG+AGG | 0.557650 | 4.4:+11266588 | MS.gene28027:CDS |
| CTTGAAGTATGAAGCTTCCA+TGG | 0.558623 | 4.4:-11266109 | None:intergenic |
| GTGGAGATATGTTTGTGGGT+GGG | 0.558835 | 4.4:-11265954 | None:intergenic |
| GGAGCGTGGAGATATGTTTG+TGG | 0.559172 | 4.4:-11265959 | None:intergenic |
| AGTTTCTACCACCGGTTGAA+GGG | 0.559859 | 4.4:-11266148 | None:intergenic |
| GTTGTGGGATTCGGTGAGAG+AGG | 0.560768 | 4.4:+11266640 | MS.gene28027:CDS |
| GGAGGAGTGTAAAGAGAGGG+TGG | 0.560791 | 4.4:+11266592 | MS.gene28027:CDS |
| AGCGGTTGCGCGTGAACCGT+CGG | 0.562609 | 4.4:-11265991 | None:intergenic |
| TAAGGTTTAGTGAGTCTGAT+CGG | 0.565323 | 4.4:+11266729 | MS.gene28027:CDS |
| GTTGGAGGAGTGTAAAGAGA+GGG | 0.565591 | 4.4:+11266589 | MS.gene28027:CDS |
| GAGCGTGGAGATATGTTTGT+GGG | 0.568041 | 4.4:-11265958 | None:intergenic |
| ATAATACAAATCCAACTTCG+TGG | 0.571622 | 4.4:+11266195 | MS.gene28027:CDS |
| TTGTTGTTTGAAGAGGTTGG+AGG | 0.572648 | 4.4:+11266574 | MS.gene28027:CDS |
| CCTTCCAGAGGGAAACCAAA+GGG | 0.573156 | 4.4:-11266783 | None:intergenic |
| GAGATATGTTTGTGGGTGGG+AGG | 0.573647 | 4.4:-11265951 | None:intergenic |
| TAATACAAATCCAACTTCGT+GGG | 0.573656 | 4.4:+11266196 | MS.gene28027:CDS |
| CAAGAACAAGAACAAGTTGG+TGG | 0.583931 | 4.4:+11266430 | MS.gene28027:CDS |
| GAACAAGAACAAGAACAAGT+TGG | 0.588041 | 4.4:+11266427 | MS.gene28027:CDS |
| GGCGCGTAAAAGGGAGAGGG+TGG | 0.589270 | 4.4:-11265907 | None:intergenic |
| GGTGTATAAGGAAAAGGGTA+GGG | 0.591904 | 4.4:+11266685 | MS.gene28027:CDS |
| AGGTGTATAAGGAAAAGGGT+AGG | 0.594328 | 4.4:+11266684 | MS.gene28027:CDS |
| GTTCATCATATCATCAGCCA+TGG | 0.595539 | 4.4:+11266092 | MS.gene28027:CDS |
| GTCGGTGGAGGAGAGGAGCG+TGG | 0.605829 | 4.4:-11265973 | None:intergenic |
| CATGAGGAGTTCTAAGAAGG+AGG | 0.607142 | 4.4:-11266015 | None:intergenic |
| GTGAACCGTCGGTGGAGGAG+AGG | 0.607639 | 4.4:-11265980 | None:intergenic |
| TTTGGTTTGTGAAGATTGGG+TGG | 0.619906 | 4.4:+11266466 | MS.gene28027:CDS |
| AAGTGAATGAGTTTAAGGAG+AGG | 0.627174 | 4.4:+11266513 | MS.gene28027:CDS |
| CTTTACAATAACCTTCCAGA+GGG | 0.627666 | 4.4:-11266794 | None:intergenic |
| GTTTCTTGTCTTACAAACTG+TGG | 0.632756 | 4.4:+11266332 | MS.gene28027:CDS |
| TATTATGTCGAAAATTCGAG+AGG | 0.648120 | 4.4:-11266178 | None:intergenic |
| GAGAGACTTGAGAGCAACGG+CGG | 0.649205 | 4.4:-11266063 | None:intergenic |
| TCTGTTTACCCTTCAACCGG+TGG | 0.651507 | 4.4:+11266140 | MS.gene28027:CDS |
| ACCTTCCAGAGGGAAACCAA+AGG | 0.651596 | 4.4:-11266784 | None:intergenic |
| GGTGGCGCGTAAAAGGGAGA+GGG | 0.653956 | 4.4:-11265910 | None:intergenic |
| GGTTGCGCGTGAACCGTCGG+TGG | 0.664259 | 4.4:-11265988 | None:intergenic |
| AGTGAAGGAGTCATGCGTGG+TGG | 0.667894 | 4.4:-11265928 | None:intergenic |
| TTGGGTGGTGATAGAAACTG+TGG | 0.673066 | 4.4:+11266481 | MS.gene28027:CDS |
| GATGAGAGACTTGAGAGCAA+CGG | 0.674885 | 4.4:-11266066 | None:intergenic |
| ACTTTACAATAACCTTCCAG+AGG | 0.687480 | 4.4:-11266795 | None:intergenic |
| AGGAGTGAAGGAGTCATGCG+TGG | 0.688189 | 4.4:-11265931 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTCTTTGATTATGTTTATT+AGG | - | chr4.4:11265848-11265867 | None:intergenic | 20.0% |
| AGTTGAAGTGAATGAGTTTA+AGG | + | chr4.4:11266508-11266527 | MS.gene28027:CDS | 30.0% | |
| ATAATACAAATCCAACTTCG+TGG | + | chr4.4:11266195-11266214 | MS.gene28027:CDS | 30.0% | |
| TAATACAAATCCAACTTCGT+GGG | + | chr4.4:11266196-11266215 | MS.gene28027:CDS | 30.0% | |
| TATTATGTCGAAAATTCGAG+AGG | - | chr4.4:11266181-11266200 | None:intergenic | 30.0% | |
| TTATGTACTTCACGAATCTT+GGG | + | chr4.4:11266266-11266285 | MS.gene28027:CDS | 30.0% | |
| TTTATGTACTTCACGAATCT+TGG | + | chr4.4:11266265-11266284 | MS.gene28027:CDS | 30.0% | |
| !! | AATTGGTTTGTTGTTTGAAG+AGG | + | chr4.4:11266567-11266586 | MS.gene28027:CDS | 30.0% |
| !! | GAATTTGGTTTGTGAAGATT+GGG | + | chr4.4:11266463-11266482 | MS.gene28027:CDS | 30.0% |
| !! | TGAATTTGGTTTGTGAAGAT+TGG | + | chr4.4:11266462-11266481 | MS.gene28027:CDS | 30.0% |
| AAGTGAATGAGTTTAAGGAG+AGG | + | chr4.4:11266513-11266532 | MS.gene28027:CDS | 35.0% | |
| AATGAGTTTAAGGAGAGGTT+AGG | + | chr4.4:11266518-11266537 | MS.gene28027:CDS | 35.0% | |
| ATAAGGAGGGAAGAAAGTTA+AGG | + | chr4.4:11266711-11266730 | MS.gene28027:CDS | 35.0% | |
| ATCTTGGGTTTCTTCTTTCT+TGG | + | chr4.4:11266281-11266300 | MS.gene28027:CDS | 35.0% | |
| ATGAGTTTAAGGAGAGGTTA+GGG | + | chr4.4:11266519-11266538 | MS.gene28027:CDS | 35.0% | |
| ATTTGGAGAAGCTGTTGAAT+TGG | + | chr4.4:11266550-11266569 | MS.gene28027:CDS | 35.0% | |
| CTTGGAAAATCTTTGTGTGA+TGG | + | chr4.4:11266299-11266318 | MS.gene28027:CDS | 35.0% | |
| GAACAAGAACAAGAACAAGT+TGG | + | chr4.4:11266427-11266446 | MS.gene28027:CDS | 35.0% | |
| GTTAAGATAGTTTCTACCAC+CGG | - | chr4.4:11266159-11266178 | None:intergenic | 35.0% | |
| GTTGAAGGAGTTTGATTCTT+TGG | + | chr4.4:11266358-11266377 | MS.gene28027:CDS | 35.0% | |
| GTTTCTTGTCTTACAAACTG+TGG | + | chr4.4:11266332-11266351 | MS.gene28027:CDS | 35.0% | |
| TAAGGTTTAGTGAGTCTGAT+CGG | + | chr4.4:11266729-11266748 | MS.gene28027:CDS | 35.0% | |
| TTATCTGTTTACCCTTCAAC+CGG | + | chr4.4:11266137-11266156 | MS.gene28027:CDS | 35.0% | |
| TTGTTCATGTTCACTTGATC+TGG | - | chr4.4:11266413-11266432 | None:intergenic | 35.0% | |
| ! | AATGGAGGTGTATAAGGAAA+AGG | + | chr4.4:11266679-11266698 | MS.gene28027:CDS | 35.0% |
| ! | ATGGAGGTGTATAAGGAAAA+GGG | + | chr4.4:11266680-11266699 | MS.gene28027:CDS | 35.0% |
| !! | TACAAACTGTGGTTTGTTGA+AGG | + | chr4.4:11266343-11266362 | MS.gene28027:CDS | 35.0% |
| AACTTTCTTGTTGGGTACGT+TGG | + | chr4.4:11266219-11266238 | MS.gene28027:CDS | 40.0% | |
| AGGTGTATAAGGAAAAGGGT+AGG | + | chr4.4:11266684-11266703 | MS.gene28027:CDS | 40.0% | |
| CTTGAAGTATGAAGCTTCCA+TGG | - | chr4.4:11266112-11266131 | None:intergenic | 40.0% | |
| GGTGGATGAGATAGTGAATT+TGG | + | chr4.4:11266448-11266467 | MS.gene28027:CDS | 40.0% | |
| GGTGTATAAGGAAAAGGGTA+GGG | + | chr4.4:11266685-11266704 | MS.gene28027:CDS | 40.0% | |
| GTTCATCATATCATCAGCCA+TGG | + | chr4.4:11266092-11266111 | MS.gene28027:CDS | 40.0% | |
| TTCGTGGGAACTTTCTTGTT+GGG | + | chr4.4:11266211-11266230 | MS.gene28027:CDS | 40.0% | |
| ! | AGGTTAGGGTGTTTGGAATT+TGG | + | chr4.4:11266533-11266552 | MS.gene28027:CDS | 40.0% |
| ! | CAAGAACAAGAACAAGTTGG+TGG | + | chr4.4:11266430-11266449 | MS.gene28027:CDS | 40.0% |
| ! | GTTTGATTCTTTGGTGACAC+TGG | + | chr4.4:11266367-11266386 | MS.gene28027:CDS | 40.0% |
| !! | GGTTTGTTGTTTGAAGAGGT+TGG | + | chr4.4:11266571-11266590 | MS.gene28027:CDS | 40.0% |
| !! | TTGTTGTTTGAAGAGGTTGG+AGG | + | chr4.4:11266574-11266593 | MS.gene28027:CDS | 40.0% |
| !! | TTTGGTTTGTGAAGATTGGG+TGG | + | chr4.4:11266466-11266485 | MS.gene28027:CDS | 40.0% |
| !!! | ATGATTTTGGAGTCACAGCA+AGG | + | chr4.4:11266617-11266636 | MS.gene28027:CDS | 40.0% |
| !!! | CGTTGTTGGTGTTTTGAAGA+CGG | - | chr4.4:11266043-11266062 | None:intergenic | 40.0% |
| !!! | TGATTTTGGAGTCACAGCAA+GGG | + | chr4.4:11266618-11266637 | MS.gene28027:CDS | 40.0% |
| AGAGAGGTGAAGGATAAGGT+TGG | + | chr4.4:11266656-11266675 | MS.gene28027:CDS | 45.0% | |
| CAAGAAAGTTCCCACGAAGT+TGG | - | chr4.4:11266209-11266228 | None:intergenic | 45.0% | |
| CTCCTTCTTAGAACTCCTCA+TGG | + | chr4.4:11266016-11266035 | MS.gene28027:CDS | 45.0% | |
| CTTCGTGGGAACTTTCTTGT+TGG | + | chr4.4:11266210-11266229 | MS.gene28027:CDS | 45.0% | |
| GAAGGATAAGGTTGGAATGG+AGG | + | chr4.4:11266664-11266683 | MS.gene28027:CDS | 45.0% | |
| GAGCGTGGAGATATGTTTGT+GGG | - | chr4.4:11265961-11265980 | None:intergenic | 45.0% | |
| GATGAGAGACTTGAGAGCAA+CGG | - | chr4.4:11266069-11266088 | None:intergenic | 45.0% | |
| GGTGAAGGATAAGGTTGGAA+TGG | + | chr4.4:11266661-11266680 | MS.gene28027:CDS | 45.0% | |
| GTGGAGATATGTTTGTGGGT+GGG | - | chr4.4:11265957-11265976 | None:intergenic | 45.0% | |
| TCAGTTCTCGTGATTCCCTT+TGG | + | chr4.4:11266768-11266787 | MS.gene28027:CDS | 45.0% | |
| TTGGGTGGTGATAGAAACTG+TGG | + | chr4.4:11266481-11266500 | MS.gene28027:CDS | 45.0% | |
| ! | AGTTTCTACCACCGGTTGAA+GGG | - | chr4.4:11266151-11266170 | None:intergenic | 45.0% |
| ! | GGTTGGAATGGAGGTGTATA+AGG | + | chr4.4:11266673-11266692 | MS.gene28027:CDS | 45.0% |
| ! | GTTGGAGGAGTGTAAAGAGA+GGG | + | chr4.4:11266589-11266608 | MS.gene28027:CDS | 45.0% |
| ! | TAAGGAGAGGTTAGGGTGTT+TGG | + | chr4.4:11266526-11266545 | MS.gene28027:CDS | 45.0% |
| ! | TAGTTTCTACCACCGGTTGA+AGG | - | chr4.4:11266152-11266171 | None:intergenic | 45.0% |
| ! | TCTTTGGTGACACTGGTTGA+GGG | + | chr4.4:11266374-11266393 | MS.gene28027:CDS | 45.0% |
| ! | TTCTTTGGTGACACTGGTTG+AGG | + | chr4.4:11266373-11266392 | MS.gene28027:CDS | 45.0% |
| !! | AGAGAGGGTGGTGATGATTT+TGG | + | chr4.4:11266604-11266623 | MS.gene28027:CDS | 45.0% |
| !! | CATGAGGAGTTCTAAGAAGG+AGG | - | chr4.4:11266018-11266037 | None:intergenic | 45.0% |
| !! | GAGTTCTAAGAAGGAGGAAG+CGG | - | chr4.4:11266012-11266031 | None:intergenic | 45.0% |
| !! | GTCCATGAGGAGTTCTAAGA+AGG | - | chr4.4:11266021-11266040 | None:intergenic | 45.0% |
| !!! | TGTTTTGAAGACGGTCCATG+AGG | - | chr4.4:11266034-11266053 | None:intergenic | 45.0% |
| AAAGGGTAGGGTGCATAAGG+AGG | + | chr4.4:11266697-11266716 | MS.gene28027:CDS | 50.0% | |
| AAGGGTAGGGTGCATAAGGA+GGG | + | chr4.4:11266698-11266717 | MS.gene28027:CDS | 50.0% | |
| ACAGCAAGGGTTGTGGGATT+CGG | + | chr4.4:11266631-11266650 | MS.gene28027:CDS | 50.0% | |
| ACCTTCCAGAGGGAAACCAA+AGG | - | chr4.4:11266787-11266806 | None:intergenic | 50.0% | |
| CCTTCCAGAGGGAAACCAAA+GGG | - | chr4.4:11266786-11266805 | None:intergenic | 50.0% | |
| CGTGGAGATATGTTTGTGGG+TGG | - | chr4.4:11265958-11265977 | None:intergenic | 50.0% | |
| GAGATATGTTTGTGGGTGGG+AGG | - | chr4.4:11265954-11265973 | None:intergenic | 50.0% | |
| GGAAAAGGGTAGGGTGCATA+AGG | + | chr4.4:11266694-11266713 | MS.gene28027:CDS | 50.0% | |
| GGAGCGTGGAGATATGTTTG+TGG | - | chr4.4:11265962-11265981 | None:intergenic | 50.0% | |
| GGTGAGAGAGGTGAAGGATA+AGG | + | chr4.4:11266652-11266671 | MS.gene28027:CDS | 50.0% | |
| TCTGTTTACCCTTCAACCGG+TGG | + | chr4.4:11266140-11266159 | MS.gene28027:CDS | 50.0% | |
| ! | CTTTGGTGACACTGGTTGAG+GGG | + | chr4.4:11266375-11266394 | MS.gene28027:CDS | 50.0% |
| ! | GATTCCCTTTGGTTTCCCTC+TGG | + | chr4.4:11266779-11266798 | MS.gene28027:CDS | 50.0% |
| ! | GGTTGGAGGAGTGTAAAGAG+AGG | + | chr4.4:11266588-11266607 | MS.gene28027:CDS | 50.0% |
| AGGAGTGAAGGAGTCATGCG+TGG | - | chr4.4:11265934-11265953 | None:intergenic | 55.0% | |
| AGTGAAGGAGTCATGCGTGG+TGG | - | chr4.4:11265931-11265950 | None:intergenic | 55.0% | |
| CGTAAAAGGGAGAGGGTGGT+GGG | - | chr4.4:11265906-11265925 | None:intergenic | 55.0% | |
| GAGAGACTTGAGAGCAACGG+CGG | - | chr4.4:11266066-11266085 | None:intergenic | 55.0% | |
| GGAGTCACAGCAAGGGTTGT+GGG | + | chr4.4:11266625-11266644 | MS.gene28027:CDS | 55.0% | |
| TGGAGTCACAGCAAGGGTTG+TGG | + | chr4.4:11266624-11266643 | MS.gene28027:CDS | 55.0% | |
| TTTGTGGGTGGGAGGAGTGA+AGG | - | chr4.4:11265946-11265965 | None:intergenic | 55.0% | |
| ! | ATGCGTGGTGGCGCGTAAAA+GGG | - | chr4.4:11265919-11265938 | None:intergenic | 55.0% |
| ! | CCCTTTGGTTTCCCTCTGGA+AGG | + | chr4.4:11266783-11266802 | MS.gene28027:CDS | 55.0% |
| ! | GGAGGAGTGTAAAGAGAGGG+TGG | + | chr4.4:11266592-11266611 | MS.gene28027:CDS | 55.0% |
| !! | GGATTCGGTGAGAGAGGTGA+AGG | + | chr4.4:11266646-11266665 | MS.gene28027:CDS | 55.0% |
| !! | GTTGTGGGATTCGGTGAGAG+AGG | + | chr4.4:11266640-11266659 | MS.gene28027:CDS | 55.0% |
| GCGTAAAAGGGAGAGGGTGG+TGG | - | chr4.4:11265907-11265926 | None:intergenic | 60.0% | |
| GGTGGCGCGTAAAAGGGAGA+GGG | - | chr4.4:11265913-11265932 | None:intergenic | 60.0% | |
| ! | CATGCGTGGTGGCGCGTAAA+AGG | - | chr4.4:11265920-11265939 | None:intergenic | 60.0% |
| ! | TGGTGGCGCGTAAAAGGGAG+AGG | - | chr4.4:11265914-11265933 | None:intergenic | 60.0% |
| ACGCTCCTCTCCTCCACCGA+CGG | + | chr4.4:11265975-11265994 | MS.gene28027:CDS | 65.0% | |
| AGCGGTTGCGCGTGAACCGT+CGG | - | chr4.4:11265994-11266013 | None:intergenic | 65.0% | |
| GAGAGCAACGGCGGCGTTGT+TGG | - | chr4.4:11266057-11266076 | None:intergenic | 65.0% | |
| GGCGCGTAAAAGGGAGAGGG+TGG | - | chr4.4:11265910-11265929 | None:intergenic | 65.0% | |
| GTGAACCGTCGGTGGAGGAG+AGG | - | chr4.4:11265983-11266002 | None:intergenic | 65.0% | |
| GGTTGCGCGTGAACCGTCGG+TGG | - | chr4.4:11265991-11266010 | None:intergenic | 70.0% | |
| GTCGGTGGAGGAGAGGAGCG+TGG | - | chr4.4:11265976-11265995 | None:intergenic | 70.0% | |
| TGCGCGTGAACCGTCGGTGG+AGG | - | chr4.4:11265988-11266007 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 11265822 | 11266814 | 11265822 | ID=MS.gene28027 |
| chr4.4 | mRNA | 11265822 | 11266814 | 11265822 | ID=MS.gene28027.t1;Parent=MS.gene28027 |
| chr4.4 | exon | 11265822 | 11266814 | 11265822 | ID=MS.gene28027.t1.exon1;Parent=MS.gene28027.t1 |
| chr4.4 | CDS | 11265822 | 11266814 | 11265822 | ID=cds.MS.gene28027.t1;Parent=MS.gene28027.t1 |
| Gene Sequence |
| Protein sequence |
