AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29327

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29327.t1 MTR_7g113650 99.317 293 2 0 1 293 1 293 0.0 608
MS.gene29327.t1 MTR_1g082760 87.329 292 37 0 1 292 1 292 0.0 547
MS.gene29327.t1 MTR_4g131740 69.388 294 89 1 1 293 1 294 2.68e-151 425
MS.gene29327.t1 MTR_6g023590 33.206 262 150 8 39 288 12 260 1.34e-32 121
MS.gene29327.t1 MTR_6g023950 33.585 265 159 7 32 288 5 260 6.68e-32 119
MS.gene29327.t1 MTR_6g023610 32.955 264 152 8 39 290 12 262 4.89e-31 117
MS.gene29327.t1 MTR_6g023990 33.206 262 150 8 39 288 13 261 2.04e-30 115
MS.gene29327.t1 MTR_6g023600 34.601 263 145 9 39 288 12 260 3.34e-30 115
MS.gene29327.t1 MTR_3g085740 30.451 266 153 7 39 291 74 320 2.63e-29 114
MS.gene29327.t1 MTR_7g063270 33.984 256 153 8 40 288 16 262 1.96e-28 110
MS.gene29327.t1 MTR_6g023910 31.716 268 152 10 35 287 8 259 1.87e-27 107
MS.gene29327.t1 MTR_4g052320 31.179 263 159 7 39 292 7 256 6.61e-26 103
MS.gene29327.t1 MTR_4g132850 27.559 254 170 6 38 288 5 247 1.72e-25 102
MS.gene29327.t1 MTR_6g023600 33.840 263 141 10 39 288 12 254 3.89e-25 101
MS.gene29327.t1 MTR_4g052300 30.534 262 158 7 39 291 7 253 3.99e-25 101
MS.gene29327.t1 MTR_4g078630 30.566 265 156 7 39 288 18 269 1.45e-24 100
MS.gene29327.t1 MTR_7g063260 31.128 257 160 8 40 288 16 263 2.03e-24 99.8
MS.gene29327.t1 MTR_7g071680 28.477 302 171 10 16 288 7 292 3.40e-24 99.8
MS.gene29327.t1 MTR_3g020670 31.203 266 161 6 36 288 12 268 1.38e-23 97.8
MS.gene29327.t1 MTR_8g442750 30.882 272 155 10 34 288 9 264 1.59e-23 97.8
MS.gene29327.t1 MTR_4g052350 29.183 257 168 6 39 291 13 259 2.43e-23 96.7
MS.gene29327.t1 MTR_4g052340 29.845 258 167 6 39 292 13 260 3.44e-23 96.3
MS.gene29327.t1 MTR_7g094510 29.119 261 164 7 40 290 6 255 3.49e-22 93.2
MS.gene29327.t1 MTR_7g105590 31.122 196 121 5 39 230 7 192 5.55e-22 91.3
MS.gene29327.t1 MTR_1196s0010 31.746 252 150 8 43 288 277 512 7.36e-22 95.5
MS.gene29327.t1 MTR_4g064887 28.794 257 172 6 40 293 15 263 1.47e-21 92.0
MS.gene29327.t1 MTR_7g063320 29.008 262 165 7 40 291 15 265 2.16e-21 91.3
MS.gene29327.t1 MTR_7g110140 29.961 257 163 6 39 288 5 251 2.48e-20 88.6
MS.gene29327.t1 MTR_7g105580 29.070 258 150 9 37 288 5 235 3.48e-20 87.8
MS.gene29327.t1 MTR_7g094520 28.405 257 171 6 40 290 11 260 3.49e-20 88.2
MS.gene29327.t1 MTR_7g083870 29.658 263 161 7 39 288 34 285 5.56e-20 88.2
MS.gene29327.t1 MTR_4g058810 25.373 268 180 6 35 291 6 264 7.01e-20 87.4
MS.gene29327.t1 MTR_2g090165 28.195 266 165 8 39 292 5 256 1.28e-19 86.7
MS.gene29327.t1 MTR_4g058840 25.461 271 176 7 35 291 6 264 1.57e-19 86.7
MS.gene29327.t1 MTR_4g058820 25.461 271 176 7 35 291 6 264 1.57e-19 86.7
MS.gene29327.t1 MTR_3g068085 30.350 257 166 8 40 292 15 262 1.61e-19 86.3
MS.gene29327.t1 MTR_7g105460 33.166 199 121 4 39 234 12 201 4.95e-19 85.1
MS.gene29327.t1 MTR_7g110130 27.239 268 168 8 39 293 5 258 8.08e-19 84.3
MS.gene29327.t1 MTR_4g064883 27.985 268 173 8 34 292 5 261 8.50e-19 84.3
MS.gene29327.t1 MTR_7g107670 27.068 266 163 8 39 288 32 282 1.19e-18 84.3
MS.gene29327.t1 MTR_7g063270 30.315 254 116 8 40 288 16 213 2.31e-18 82.0
MS.gene29327.t1 MTR_7g110160 29.057 265 146 9 39 292 5 238 6.60e-18 81.6
MS.gene29327.t1 MTR_7g063390 26.538 260 174 7 40 291 16 266 7.24e-18 81.6
MS.gene29327.t1 MTR_3g068070 30.418 263 158 9 40 292 15 262 7.98e-17 79.0
MS.gene29327.t1 MTR_6g035395 28.405 257 154 6 39 288 4 237 1.67e-16 77.8
MS.gene29327.t1 MTR_8g096620 26.800 250 170 6 34 282 40 277 5.04e-16 77.8
MS.gene29327.t1 MTR_1g068955 27.519 258 167 6 40 287 14 261 6.33e-16 76.6
MS.gene29327.t1 MTR_7g063330 27.519 258 167 7 40 288 15 261 6.63e-16 76.3
MS.gene29327.t1 MTR_3g068175 27.626 257 173 6 40 292 17 264 1.27e-15 75.5
MS.gene29327.t1 MTR_3g068065 27.799 259 170 9 40 292 17 264 2.08e-15 75.1
MS.gene29327.t1 MTR_1g051165 26.923 208 134 6 33 228 7 208 6.59e-15 73.6
MS.gene29327.t1 MTR_3g087850 30.570 193 112 7 44 230 30 206 1.66e-14 72.8
MS.gene29327.t1 MTR_8g096580 27.928 222 146 6 40 258 45 255 2.19e-14 72.8
MS.gene29327.t1 MTR_4g097510 30.189 212 124 6 43 247 5 199 3.24e-14 71.6
MS.gene29327.t1 MTR_7g063360 26.154 260 175 7 40 291 16 266 4.29e-14 71.2
MS.gene29327.t1 MTR_3g068175 27.203 261 173 7 40 292 17 268 1.57e-13 69.7
MS.gene29327.t1 MTR_3g087860 34.375 128 79 3 106 230 66 191 6.20e-13 68.2
MS.gene29327.t1 MTR_7g080410 27.404 208 131 7 35 232 32 229 1.85e-12 66.6
MS.gene29327.t1 MTR_7g080410 27.404 208 131 7 35 232 32 229 2.09e-12 67.0
MS.gene29327.t1 MTR_4g084800 29.412 136 86 3 39 173 12 138 2.53e-12 63.9
MS.gene29327.t1 MTR_4g064887 27.411 197 134 4 40 234 15 204 2.81e-12 65.5
MS.gene29327.t1 MTR_5g008850 23.529 255 178 6 33 278 38 284 4.35e-12 66.2
MS.gene29327.t1 MTR_1304s0010 30.108 186 126 3 104 288 23 205 2.58e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29327.t1 AT1G54870 78.445 283 61 0 11 293 55 337 6.66e-175 486
MS.gene29327.t1 AT1G54870 78.445 283 61 0 11 293 53 335 7.47e-175 486
MS.gene29327.t1 AT3G05260 71.678 286 80 1 8 293 5 289 3.26e-160 447
MS.gene29327.t1 AT4G05530 29.730 259 168 6 33 288 2 249 8.21e-26 103
MS.gene29327.t1 AT5G06060 32.296 257 161 6 40 292 9 256 3.70e-23 96.3
MS.gene29327.t1 AT3G51680 28.938 273 161 9 39 288 31 293 7.64e-23 96.3
MS.gene29327.t1 AT1G24360 27.306 271 180 6 28 291 59 319 1.95e-22 95.5
MS.gene29327.t1 AT3G26770 28.679 265 165 8 37 288 38 291 2.92e-22 94.7
MS.gene29327.t1 AT2G47140 29.771 262 157 6 39 288 5 251 1.86e-21 91.7
MS.gene29327.t1 AT2G29150 31.439 264 163 8 35 292 11 262 2.48e-21 91.3
MS.gene29327.t1 AT2G29350 31.660 259 159 7 40 292 15 261 3.18e-21 91.3
MS.gene29327.t1 AT1G63380 25.182 274 188 6 28 291 5 271 3.98e-21 90.9
MS.gene29327.t1 AT3G04000 28.244 262 175 7 40 291 14 272 5.44e-21 90.5
MS.gene29327.t1 AT1G63380 25.468 267 182 6 35 291 10 269 5.83e-21 90.5
MS.gene29327.t1 AT1G63380 25.468 267 182 6 35 291 14 273 6.47e-21 90.5
MS.gene29327.t1 AT3G29250 29.344 259 162 7 39 288 5 251 6.73e-21 90.1
MS.gene29327.t1 AT1G63380 25.468 267 182 6 35 291 17 276 6.78e-21 90.5
MS.gene29327.t1 AT3G29260 30.534 262 160 7 36 288 2 250 8.35e-21 89.7
MS.gene29327.t1 AT3G42960 29.323 266 159 5 39 288 7 259 1.51e-20 89.4
MS.gene29327.t1 AT3G29250 29.344 259 162 7 39 288 41 287 2.27e-20 89.4
MS.gene29327.t1 AT1G52340 28.996 269 160 9 39 288 17 273 2.78e-20 89.0
MS.gene29327.t1 AT2G47120 29.615 260 166 6 38 291 5 253 3.94e-20 87.8
MS.gene29327.t1 AT3G29250 29.457 258 161 7 40 288 44 289 4.40e-20 88.6
MS.gene29327.t1 AT2G47120 29.730 259 165 6 39 291 5 252 4.60e-20 87.8
MS.gene29327.t1 AT2G29260 30.078 256 168 6 40 292 68 315 4.73e-20 89.0
MS.gene29327.t1 AT1G07440 29.771 262 160 7 40 292 12 258 5.20e-20 87.8
MS.gene29327.t1 AT2G29290 30.116 259 164 7 40 292 7 254 5.61e-20 87.4
MS.gene29327.t1 AT2G47130 29.615 260 159 7 39 288 5 250 9.86e-20 86.7
MS.gene29327.t1 AT1G62610 25.092 271 186 6 28 288 2 265 1.91e-19 86.3
MS.gene29327.t1 AT1G62610 25.379 264 180 6 35 288 14 270 2.08e-19 86.3
MS.gene29327.t1 AT1G62610 25.379 264 180 6 35 288 8 264 2.26e-19 86.3
MS.gene29327.t1 AT1G62610 25.379 264 180 6 35 288 10 266 2.40e-19 86.3
MS.gene29327.t1 AT3G12800 28.044 271 165 9 34 288 5 261 3.05e-19 86.3
MS.gene29327.t1 AT3G03980 27.985 268 175 8 35 290 9 270 7.29e-19 84.7
MS.gene29327.t1 AT3G55290 28.500 200 134 4 34 228 12 207 1.04e-18 84.3
MS.gene29327.t1 AT3G55290 28.500 200 134 4 34 228 11 206 1.09e-18 84.3
MS.gene29327.t1 AT5G18210 28.736 261 166 8 38 287 6 257 1.46e-18 83.6
MS.gene29327.t1 AT3G26760 26.217 267 171 8 37 288 33 288 1.49e-18 84.3
MS.gene29327.t1 AT2G29360 29.924 264 168 7 35 292 11 263 1.67e-18 83.6
MS.gene29327.t1 AT5G10050 32.812 192 113 5 44 232 9 187 4.15e-18 82.8
MS.gene29327.t1 AT4G03140 26.894 264 166 7 39 288 77 327 4.31e-18 83.6
MS.gene29327.t1 AT4G13180 25.769 260 176 7 40 291 13 263 1.87e-17 80.5
MS.gene29327.t1 AT2G30670 30.418 263 158 9 40 292 7 254 2.94e-17 80.1
MS.gene29327.t1 AT2G29310 31.559 263 157 10 40 293 7 255 4.75e-17 79.3
MS.gene29327.t1 AT2G17845 26.923 260 175 9 39 288 46 300 6.07e-17 79.7
MS.gene29327.t1 AT5G50600 25.366 205 143 5 37 239 42 238 1.50e-16 79.3
MS.gene29327.t1 AT5G50700 25.366 205 143 5 37 239 42 238 1.50e-16 79.3
MS.gene29327.t1 AT3G55310 25.279 269 187 6 28 288 5 267 4.27e-16 77.0
MS.gene29327.t1 AT5G18210 28.049 246 158 7 38 272 6 243 5.70e-16 76.6
MS.gene29327.t1 AT2G29370 28.253 269 166 10 35 292 11 263 9.93e-16 75.9
MS.gene29327.t1 AT1G07450 28.571 259 169 7 39 292 7 254 1.51e-15 75.1
MS.gene29327.t1 AT2G29350 32.967 182 115 5 115 292 45 223 1.80e-15 74.3
MS.gene29327.t1 AT3G47350 23.507 268 174 7 26 274 30 285 2.08e-15 75.5
MS.gene29327.t1 AT3G47350 24.034 233 163 5 26 256 30 250 1.36e-14 73.2
MS.gene29327.t1 AT2G29320 30.268 261 162 9 40 292 13 261 1.50e-14 72.4
MS.gene29327.t1 AT2G29290 30.366 191 127 5 106 292 49 237 1.92e-14 72.0
MS.gene29327.t1 AT5G65205 28.947 190 119 5 44 230 10 186 5.47e-14 71.2
MS.gene29327.t1 AT5G50690 29.500 200 127 7 35 230 40 229 5.90e-14 71.2
MS.gene29327.t1 AT5G50590 29.500 200 127 7 35 230 40 229 5.90e-14 71.2
MS.gene29327.t1 AT5G50690 29.500 200 127 7 35 230 40 229 7.54e-14 70.1
MS.gene29327.t1 AT5G50590 29.500 200 127 7 35 230 40 229 7.54e-14 70.1
MS.gene29327.t1 AT3G46170 25.126 199 140 4 35 228 21 215 1.09e-13 70.5
MS.gene29327.t1 AT2G29310 35.632 174 103 6 125 293 84 253 1.11e-13 70.1
MS.gene29327.t1 AT2G29340 28.016 257 172 6 40 292 7 254 1.19e-13 69.7
MS.gene29327.t1 AT3G03330 27.805 205 124 7 40 232 41 233 1.92e-12 67.0
MS.gene29327.t1 AT3G47360 24.885 217 147 7 43 256 48 251 2.00e-11 63.9
MS.gene29327.t1 AT4G10020 23.913 184 133 2 33 215 40 217 2.60e-11 63.9
MS.gene29327.t1 AT2G29320 33.523 176 103 7 125 292 74 243 3.93e-11 62.4
MS.gene29327.t1 AT5G50770 25.758 198 133 6 37 230 42 229 4.87e-11 63.2

Find 78 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAGGAAGCTGGTATTAA+TGG 0.282146 7.2:+3666070 None:intergenic
TTATTTGCTGGCTTGTAATC+AGG 0.287013 7.2:+3666849 None:intergenic
GGGTTGCACCTGGACCTATT+TGG 0.290135 7.2:-3666096 MS.gene29327:CDS
TTACCTGGTCATGAAGAAAT+AGG 0.312741 7.2:+3666366 None:intergenic
TGCAACTTGTTTGCATTAGA+AGG 0.324302 7.2:-3666673 MS.gene29327:CDS
TCCTTCCTTCATATGCTTCA+AGG 0.325854 7.2:+3666261 None:intergenic
TATACTTGAAGCTTATTTGC+TGG 0.330305 7.2:+3666837 None:intergenic
CACCGTTAGGGTGGAGGACT+TGG 0.340636 7.2:+3665927 None:intergenic
GGTATTAATGGAGTCCAAAT+AGG 0.375889 7.2:+3666082 None:intergenic
CAATGCTCCTCTTACATAAC+TGG 0.377326 7.2:-3665950 MS.gene29327:CDS
GGCTGTCCAGCCCTCTTCAT+TGG 0.397093 7.2:+3666013 None:intergenic
GATGAGATCATCAATGCTTA+TGG 0.400046 7.2:-3666496 MS.gene29327:CDS
GAATTGAGGAGTTGGATTCA+TGG 0.423233 7.2:+3666878 None:intergenic
AAGGAGGGAGCAACCTCAAC+AGG 0.426792 7.2:+3665992 None:intergenic
GTTGTGTGTCTTGCTTCTGA+GGG 0.431972 7.2:+3666916 None:intergenic
TTCATGGCATGTTCTTTGCC+AGG 0.442662 7.2:+3666894 None:intergenic
GAGGAAAAGACTGCTCAGTT+TGG 0.445973 7.2:-3666046 MS.gene29327:CDS
AGCAAAGGTATAAGAGTGAA+TGG 0.447089 7.2:-3666118 MS.gene29327:CDS
GGTTGTGTGTCTTGCTTCTG+AGG 0.447787 7.2:+3666915 None:intergenic
GATTGACTACACGTCTACTA+AGG 0.451933 7.2:-3666185 MS.gene29327:CDS
AAAACCAAGGTCAGCTGGTA+TGG 0.465538 7.2:+3666543 None:intergenic
ACTGGAGGTGACTCTGGAAT+AGG 0.468261 7.2:-3666706 MS.gene29327:CDS
GTGGTGACTGGAGGTGACTC+TGG 0.474334 7.2:-3666712 MS.gene29327:CDS
TATGTAAGAGGAGCATTGGT+TGG 0.483625 7.2:+3665955 None:intergenic
CTAAACACCCTCTCGAGTCT+TGG 0.486019 7.2:+3666403 None:intergenic
GGAAAGATAGCAGTGGTGAC+TGG 0.488593 7.2:-3666724 MS.gene29327:CDS
GCAAAGGTATAAGAGTGAAT+GGG 0.489864 7.2:-3666117 MS.gene29327:CDS
GTGTGTCTTGCTTCTGAGGG+GGG 0.498025 7.2:+3666919 None:intergenic
TATTTGCTGGCTTGTAATCA+GGG 0.505129 7.2:+3666850 None:intergenic
GGGCAAGTGAATTGAGGAGT+TGG 0.510225 7.2:+3666870 None:intergenic
AGAGTGAATGGGGTTGCACC+TGG 0.511342 7.2:-3666106 MS.gene29327:CDS
TCATCAAAACCAAGGTCAGC+TGG 0.512091 7.2:+3666538 None:intergenic
GACTTGGCCAGTTATGTAAG+AGG 0.522164 7.2:+3665943 None:intergenic
TTGTCTTTGAAAATGACTAC+TGG 0.530321 7.2:-3666954 None:intergenic
TCTCCTATTTCTTCATGACC+AGG 0.531066 7.2:-3666369 MS.gene29327:intron
AGGTCAGCTGGTATGGCCAT+TGG 0.532414 7.2:+3666550 None:intergenic
CAGAAGCAAGACACACAACC+TGG 0.534884 7.2:-3666912 MS.gene29327:CDS
CATCAGTGAATGCATACAAA+GGG 0.536432 7.2:-3666219 MS.gene29327:CDS
CAGTTATGTAAGAGGAGCAT+TGG 0.539760 7.2:+3665951 None:intergenic
TTATAAGTATATCACCGTTA+GGG 0.544380 7.2:+3665915 None:intergenic
GCCTTGAAGCATATGAAGGA+AGG 0.554851 7.2:-3666262 MS.gene29327:CDS
AATGGAGTCCAAATAGGTCC+AGG 0.558031 7.2:+3666088 None:intergenic
TGTGTGTCTTGCTTCTGAGG+GGG 0.558926 7.2:+3666918 None:intergenic
TCACTTCAGCTTGTGAGCAA+AGG 0.563107 7.2:-3666133 MS.gene29327:CDS
GTATATCACCGTTAGGGTGG+AGG 0.563677 7.2:+3665921 None:intergenic
GACATGAAGACAAGGATGCA+AGG 0.568289 7.2:-3666621 MS.gene29327:CDS
GATGTGCCAATGAAGAGGGC+TGG 0.569113 7.2:-3666019 MS.gene29327:CDS
TAATCAGGGCAAGTGAATTG+AGG 0.569797 7.2:+3666864 None:intergenic
TCTTTGAAAATGACTACTGG+TGG 0.576504 7.2:-3666951 None:intergenic
TGCAGTTCTCATCAAAACCA+AGG 0.579453 7.2:+3666530 None:intergenic
ATGGCCATACCAGCTGACCT+TGG 0.579837 7.2:-3666547 MS.gene29327:CDS
GCATGCCTTGAAGCATATGA+AGG 0.582221 7.2:-3666266 MS.gene29327:CDS
TGCAAATGCTAAAGATCCAA+TGG 0.583968 7.2:-3666566 MS.gene29327:CDS
GTATGAGTGTGGTTCAGTTG+AGG 0.586482 7.2:-3666437 MS.gene29327:CDS
AATACCAGCTTCCTTCAATG+AGG 0.587076 7.2:-3666065 MS.gene29327:CDS
TAAGTATATCACCGTTAGGG+TGG 0.587839 7.2:+3665918 None:intergenic
CAAAGGTATAAGAGTGAATG+GGG 0.588385 7.2:-3666116 MS.gene29327:CDS
ATTGACTACACGTCTACTAA+GGG 0.600043 7.2:-3666184 MS.gene29327:CDS
GTCTACTAAGGGTGCCATTG+TGG 0.601115 7.2:-3666173 MS.gene29327:CDS
TTGTGTGTCTTGCTTCTGAG+GGG 0.601148 7.2:+3666917 None:intergenic
GGCCAAGTCCTCCACCCTAA+CGG 0.603755 7.2:-3665929 MS.gene29327:intron
TGATGAACCAAGACTCGAGA+GGG 0.616091 7.2:-3666410 MS.gene29327:CDS
ACATGAAGACAAGGATGCAA+GGG 0.623701 7.2:-3666620 MS.gene29327:CDS
ACATCAGTGAATGCATACAA+AGG 0.633175 7.2:-3666220 MS.gene29327:CDS
TGATGAGAACTGCAAAAGAG+TGG 0.636935 7.2:-3666521 MS.gene29327:CDS
GAAGCAAGAAACACAAAGGA+GGG 0.642980 7.2:+3665977 None:intergenic
TGCCCTTGTAAAAGCCACAA+TGG 0.645018 7.2:+3666159 None:intergenic
GAGGGCTGGACAGCCTGTTG+AGG 0.646836 7.2:-3666005 MS.gene29327:CDS
GGAAGCAAGAAACACAAAGG+AGG 0.652897 7.2:+3665976 None:intergenic
TAGTGATGTGCCAATGAAGA+GGG 0.666583 7.2:-3666023 MS.gene29327:CDS
AAGATAGCAGTGGTGACTGG+AGG 0.668759 7.2:-3666721 MS.gene29327:CDS
GTAGTGATGTGCCAATGAAG+AGG 0.682060 7.2:-3666024 MS.gene29327:CDS
TGTGAAGGGACATGAAGACA+AGG 0.694651 7.2:-3666629 MS.gene29327:CDS
GTTGGAAGCAAGAAACACAA+AGG 0.702058 7.2:+3665973 None:intergenic
TTGATGAACCAAGACTCGAG+AGG 0.710937 7.2:-3666411 MS.gene29327:CDS
CACCATCTATGCATTCACAA+CGG 0.721804 7.2:+3665811 None:intergenic
GCAGCTGAGCAGTATGAGTG+TGG 0.735028 7.2:-3666448 MS.gene29327:CDS
CACATATGTGAAAATCACAG+TGG 0.762212 7.2:+3666648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTAATTAAATTAGATAAAT+CGG - chr7.2:3666425-3666444 MS.gene29327:CDS 10.0%
!!! AATTTAATAATTTGTTTTTC+AGG - chr7.2:3666013-3666032 MS.gene29327:CDS 10.0%
!!! ATTTAATAATTTGTTTTTCA+GGG - chr7.2:3666014-3666033 MS.gene29327:CDS 10.0%
!! TTATCTAATTTAATTAAGAG+TGG + chr7.2:3666423-3666442 None:intergenic 15.0%
!!! CTTTTCATTTTTTATTTTTC+AGG - chr7.2:3666920-3666939 MS.gene29327:CDS 15.0%
!!! TTCATTTTTTATTTTTCAGG+AGG - chr7.2:3666923-3666942 MS.gene29327:CDS 20.0%
! ATATTTGTTCACACATTCTA+TGG - chr7.2:3666882-3666901 MS.gene29327:CDS 25.0%
! CACACTTGATATGTTAAAAA+TGG - chr7.2:3666163-3666182 MS.gene29327:CDS 25.0%
! TGACTAACTATTTGTGTAAT+AGG - chr7.2:3666471-3666490 MS.gene29327:CDS 25.0%
! TTATAAGTATATCACCGTTA+GGG + chr7.2:3666847-3666866 None:intergenic 25.0%
! TTTATAAGTATATCACCGTT+AGG + chr7.2:3666848-3666867 None:intergenic 25.0%
!!! GATGTTATTTCATGAATTTG+GGG - chr7.2:3666447-3666466 MS.gene29327:CDS 25.0%
!!! GGATGTTATTTCATGAATTT+GGG - chr7.2:3666446-3666465 MS.gene29327:CDS 25.0%
ATTAAGAGTGGTTTATTACC+TGG + chr7.2:3666411-3666430 None:intergenic 30.0%
TATACTTGAAGCTTATTTGC+TGG + chr7.2:3665925-3665944 None:intergenic 30.0%
! GTGATTTTCACATATGTGAA+GGG - chr7.2:3666116-3666135 MS.gene29327:CDS 30.0%
! TGTGATTTTCACATATGTGA+AGG - chr7.2:3666115-3666134 MS.gene29327:CDS 30.0%
!! CGGATGTTATTTCATGAATT+TGG - chr7.2:3666445-3666464 MS.gene29327:CDS 30.0%
ACATCAGTGAATGCATACAA+AGG - chr7.2:3666539-3666558 MS.gene29327:CDS 35.0%
ATTGACTACACGTCTACTAA+GGG - chr7.2:3666575-3666594 MS.gene29327:CDS 35.0%
CACATATGTGAAAATCACAG+TGG + chr7.2:3666114-3666133 None:intergenic 35.0%
CATCAGTGAATGCATACAAA+GGG - chr7.2:3666540-3666559 MS.gene29327:CDS 35.0%
GATGAGATCATCAATGCTTA+TGG - chr7.2:3666263-3666282 MS.gene29327:CDS 35.0%
GGTATTAATGGAGTCCAAAT+AGG + chr7.2:3666680-3666699 None:intergenic 35.0%
TGCAAATGCTAAAGATCCAA+TGG - chr7.2:3666193-3666212 MS.gene29327:CDS 35.0%
TTACCTGGTCATGAAGAAAT+AGG + chr7.2:3666396-3666415 None:intergenic 35.0%
TTGAAGGAAGCTGGTATTAA+TGG + chr7.2:3666692-3666711 None:intergenic 35.0%
! AGCAAAGGTATAAGAGTGAA+TGG - chr7.2:3666641-3666660 MS.gene29327:CDS 35.0%
! CAAAGGTATAAGAGTGAATG+GGG - chr7.2:3666643-3666662 MS.gene29327:CDS 35.0%
! GCAAAGGTATAAGAGTGAAT+GGG - chr7.2:3666642-3666661 MS.gene29327:CDS 35.0%
! TGCAACTTGTTTGCATTAGA+AGG - chr7.2:3666086-3666105 MS.gene29327:CDS 35.0%
!! TATTTGCTGGCTTGTAATCA+GGG + chr7.2:3665912-3665931 None:intergenic 35.0%
!! TTATTTGCTGGCTTGTAATC+AGG + chr7.2:3665913-3665932 None:intergenic 35.0%
AATACCAGCTTCCTTCAATG+AGG - chr7.2:3666694-3666713 MS.gene29327:CDS 40.0%
ACATGAAGACAAGGATGCAA+GGG - chr7.2:3666139-3666158 MS.gene29327:CDS 40.0%
CAATGCTCCTCTTACATAAC+TGG - chr7.2:3666809-3666828 MS.gene29327:intron 40.0%
GAAGCAAGAAACACAAAGGA+GGG + chr7.2:3666785-3666804 None:intergenic 40.0%
GAATTGAGGAGTTGGATTCA+TGG + chr7.2:3665884-3665903 None:intergenic 40.0%
GATTGACTACACGTCTACTA+AGG - chr7.2:3666574-3666593 MS.gene29327:CDS 40.0%
GTTGGAAGCAAGAAACACAA+AGG + chr7.2:3666789-3666808 None:intergenic 40.0%
TAAGTATATCACCGTTAGGG+TGG + chr7.2:3666844-3666863 None:intergenic 40.0%
TAATCAGGGCAAGTGAATTG+AGG + chr7.2:3665898-3665917 None:intergenic 40.0%
TAGTGATGTGCCAATGAAGA+GGG - chr7.2:3666736-3666755 MS.gene29327:intron 40.0%
TCCTTCCTTCATATGCTTCA+AGG + chr7.2:3666501-3666520 None:intergenic 40.0%
TGATGAGAACTGCAAAAGAG+TGG - chr7.2:3666238-3666257 MS.gene29327:CDS 40.0%
TGCAGTTCTCATCAAAACCA+AGG + chr7.2:3666232-3666251 None:intergenic 40.0%
! AGCAGTCTTTTCCTCATTGA+AGG + chr7.2:3666708-3666727 None:intergenic 40.0%
! CAGTTATGTAAGAGGAGCAT+TGG + chr7.2:3666811-3666830 None:intergenic 40.0%
! TCTCCTATTTCTTCATGACC+AGG - chr7.2:3666390-3666409 MS.gene29327:CDS 40.0%
! TGCCATTGTGGCTTTTACAA+GGG - chr7.2:3666598-3666617 MS.gene29327:CDS 40.0%
! TTTTCCTCATTGAAGGAAGC+TGG + chr7.2:3666701-3666720 None:intergenic 40.0%
!! TATGTAAGAGGAGCATTGGT+TGG + chr7.2:3666807-3666826 None:intergenic 40.0%
!! TTTTCAGGGAAAGATAGCAG+TGG - chr7.2:3666028-3666047 MS.gene29327:CDS 40.0%
AAAACCAAGGTCAGCTGGTA+TGG + chr7.2:3666219-3666238 None:intergenic 45.0%
AATGGAGTCCAAATAGGTCC+AGG + chr7.2:3666674-3666693 None:intergenic 45.0%
GACATGAAGACAAGGATGCA+AGG - chr7.2:3666138-3666157 MS.gene29327:CDS 45.0%
GACTTGGCCAGTTATGTAAG+AGG + chr7.2:3666819-3666838 None:intergenic 45.0%
GAGGAAAAGACTGCTCAGTT+TGG - chr7.2:3666713-3666732 MS.gene29327:CDS 45.0%
GCATGCCTTGAAGCATATGA+AGG - chr7.2:3666493-3666512 MS.gene29327:CDS 45.0%
GCCTTGAAGCATATGAAGGA+AGG - chr7.2:3666497-3666516 MS.gene29327:CDS 45.0%
GGAAGCAAGAAACACAAAGG+AGG + chr7.2:3666786-3666805 None:intergenic 45.0%
GTAGTGATGTGCCAATGAAG+AGG - chr7.2:3666735-3666754 MS.gene29327:intron 45.0%
GTATGAGTGTGGTTCAGTTG+AGG - chr7.2:3666322-3666341 MS.gene29327:intron 45.0%
GTTGTGTGTCTTGCTTCTGA+GGG + chr7.2:3665846-3665865 None:intergenic 45.0%
TCACTTCAGCTTGTGAGCAA+AGG - chr7.2:3666626-3666645 MS.gene29327:CDS 45.0%
TCATCAAAACCAAGGTCAGC+TGG + chr7.2:3666224-3666243 None:intergenic 45.0%
TGATGAACCAAGACTCGAGA+GGG - chr7.2:3666349-3666368 MS.gene29327:intron 45.0%
TGCCCTTGTAAAAGCCACAA+TGG + chr7.2:3666603-3666622 None:intergenic 45.0%
TGTGAAGGGACATGAAGACA+AGG - chr7.2:3666130-3666149 MS.gene29327:CDS 45.0%
TTCATGGCATGTTCTTTGCC+AGG + chr7.2:3665868-3665887 None:intergenic 45.0%
TTGATGAACCAAGACTCGAG+AGG - chr7.2:3666348-3666367 MS.gene29327:intron 45.0%
TTGTGTGTCTTGCTTCTGAG+GGG + chr7.2:3665845-3665864 None:intergenic 45.0%
!! GTGCCATTGTGGCTTTTACA+AGG - chr7.2:3666597-3666616 MS.gene29327:CDS 45.0%
AAGATAGCAGTGGTGACTGG+AGG - chr7.2:3666038-3666057 MS.gene29327:CDS 50.0%
CAGAAGCAAGACACACAACC+TGG - chr7.2:3665847-3665866 MS.gene29327:intron 50.0%
CTAAACACCCTCTCGAGTCT+TGG + chr7.2:3666359-3666378 None:intergenic 50.0%
GGAAAGATAGCAGTGGTGAC+TGG - chr7.2:3666035-3666054 MS.gene29327:CDS 50.0%
GGGCAAGTGAATTGAGGAGT+TGG + chr7.2:3665892-3665911 None:intergenic 50.0%
GGTTGTGTGTCTTGCTTCTG+AGG + chr7.2:3665847-3665866 None:intergenic 50.0%
GTATATCACCGTTAGGGTGG+AGG + chr7.2:3666841-3666860 None:intergenic 50.0%
! TGTGTGTCTTGCTTCTGAGG+GGG + chr7.2:3665844-3665863 None:intergenic 50.0%
!! ACTGGAGGTGACTCTGGAAT+AGG - chr7.2:3666053-3666072 MS.gene29327:CDS 50.0%
!! GTCTACTAAGGGTGCCATTG+TGG - chr7.2:3666586-3666605 MS.gene29327:CDS 50.0%
AAGGAGGGAGCAACCTCAAC+AGG + chr7.2:3666770-3666789 None:intergenic 55.0%
AGAGTGAATGGGGTTGCACC+TGG - chr7.2:3666653-3666672 MS.gene29327:CDS 55.0%
AGGTCAGCTGGTATGGCCAT+TGG + chr7.2:3666212-3666231 None:intergenic 55.0%
ATGGCCATACCAGCTGACCT+TGG - chr7.2:3666212-3666231 MS.gene29327:CDS 55.0%
GATGTGCCAATGAAGAGGGC+TGG - chr7.2:3666740-3666759 MS.gene29327:intron 55.0%
GCAGCTGAGCAGTATGAGTG+TGG - chr7.2:3666311-3666330 MS.gene29327:intron 55.0%
GGGTTGCACCTGGACCTATT+TGG - chr7.2:3666663-3666682 MS.gene29327:CDS 55.0%
! GTGTGTCTTGCTTCTGAGGG+GGG + chr7.2:3665843-3665862 None:intergenic 55.0%
CACCGTTAGGGTGGAGGACT+TGG + chr7.2:3666835-3666854 None:intergenic 60.0%
GGCCAAGTCCTCCACCCTAA+CGG - chr7.2:3666830-3666849 MS.gene29327:intron 60.0%
GGCTGTCCAGCCCTCTTCAT+TGG + chr7.2:3666749-3666768 None:intergenic 60.0%
GTGGTGACTGGAGGTGACTC+TGG - chr7.2:3666047-3666066 MS.gene29327:CDS 60.0%
GAGGGCTGGACAGCCTGTTG+AGG - chr7.2:3666754-3666773 MS.gene29327:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 3665817 3666964 3665817 ID=MS.gene29327
chr7.2 mRNA 3665817 3666964 3665817 ID=MS.gene29327.t1;Parent=MS.gene29327
chr7.2 exon 3666842 3666964 3666842 ID=MS.gene29327.t1.exon1;Parent=MS.gene29327.t1
chr7.2 CDS 3666842 3666964 3666842 ID=cds.MS.gene29327.t1;Parent=MS.gene29327.t1
chr7.2 exon 3666370 3666746 3666370 ID=MS.gene29327.t1.exon2;Parent=MS.gene29327.t1
chr7.2 CDS 3666370 3666746 3666370 ID=cds.MS.gene29327.t1;Parent=MS.gene29327.t1
chr7.2 exon 3665930 3666288 3665930 ID=MS.gene29327.t1.exon3;Parent=MS.gene29327.t1
chr7.2 CDS 3665930 3666288 3665930 ID=cds.MS.gene29327.t1;Parent=MS.gene29327.t1
chr7.2 exon 3665817 3665839 3665817 ID=MS.gene29327.t1.exon4;Parent=MS.gene29327.t1
chr7.2 CDS 3665817 3665839 3665817 ID=cds.MS.gene29327.t1;Parent=MS.gene29327.t1
Gene Sequence

>MS.gene29327

ATGACTACTGGTGGACAAAAAATCCCCCCTCAGAAGCAAGACACACAACCTGGCAAAGAACATGCCATGAATCCAACTCCTCAATTCACTTGCCCTGATTACAAGCCAGCAAATAAGCTTCAAGTATATGTTTCTACATTAATAAATTTATACAATAATTCGCTTATTTAATCATTTTAATGACAAATAATCAATCAATTTAATAATTTGTTTTTCAGGGAAAGATAGCAGTGGTGACTGGAGGTGACTCTGGAATAGGACGTGCAGTATGCAACTTGTTTGCATTAGAAGGTGCCACTGTGATTTTCACATATGTGAAGGGACATGAAGACAAGGATGCAAGGGACACACTTGATATGTTAAAAATGGCTAAGACTGCAAATGCTAAAGATCCAATGGCCATACCAGCTGACCTTGGTTTTGATGAGAACTGCAAAAGAGTGGTTGATGAGATCATCAATGCTTATGGCAGAATTGATATTCTCGTCAACAATGCAGCTGAGCAGTATGAGTGTGGTTCAGTTGAGGAGATTGATGAACCAAGACTCGAGAGGGTGTTTAGAACTAACATCTTCTCCTATTTCTTCATGACCAGGTAATAAACCACTCTTAATTAAATTAGATAAATCGGATGTTATTTCATGAATTTGGGGTTGACTAACTATTTGTGTAATAGGCATGCCTTGAAGCATATGAAGGAAGGAAGCAGCATTATTAACACAACATCAGTGAATGCATACAAAGGGAACTCGACATTGATTGACTACACGTCTACTAAGGGTGCCATTGTGGCTTTTACAAGGGCACTTTCACTTCAGCTTGTGAGCAAAGGTATAAGAGTGAATGGGGTTGCACCTGGACCTATTTGGACTCCATTAATACCAGCTTCCTTCAATGAGGAAAAGACTGCTCAGTTTGGTAGTGATGTGCCAATGAAGAGGGCTGGACAGCCTGTTGAGGTTGCTCCCTCCTTTGTGTTTCTTGCTTCCAACCAATGCTCCTCTTACATAACTGGCCAAGTCCTCCACCCTAACGGTGATATACTTATAAATGCTTCTATGTTATATATTTGTTCACACATTCTATGGTCTTTCTAACACATTCTTTTCATTTTTTATTTTTCAGGAGGAACCGTTGTGAATGCATAG
Protein sequence

>MS.gene29327.t1

MTTGGQKIPPQKQDTQPGKEHAMNPTPQFTCPDYKPANKLQGKIAVVTGGDSGIGRAVCNLFALEGATVIFTYVKGHEDKDARDTLDMLKMAKTANAKDPMAIPADLGFDENCKRVVDEIINAYGRIDILVNNAAEQYECGSVEEIDEPRLERVFRTNIFSYFFMTRHALKHMKEGSSIINTTSVNAYKGNSTLIDYTSTKGAIVAFTRALSLQLVSKGIRVNGVAPGPIWTPLIPASFNEEKTAQFGSDVPMKRAGQPVEVAPSFVFLASNQCSSYITGQVLHPNGGTVVNA