Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29791.t1 | XP_003602090.2 | 95.7 | 810 | 35 | 0 | 1 | 810 | 58 | 867 | 0.00E+00 | 1502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29791.t1 | Q84W56 | 72.2 | 828 | 205 | 6 | 1 | 809 | 90 | 911 | 0.0e+00 | 1164.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29791.t1 | G7J5I7 | 95.7 | 810 | 35 | 0 | 1 | 810 | 58 | 867 | 0.0e+00 | 1502.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene29791.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene29791 | 0.814899 | 1.22E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene29791 | 0.819558 | 1.09E-52 | -1.69E-46 |
| MS.gene050426 | MS.gene29791 | -0.83419 | 3.46E-56 | -1.69E-46 |
| MS.gene050642 | MS.gene29791 | 0.863705 | 2.06E-64 | -1.69E-46 |
| MS.gene050812 | MS.gene29791 | 0.817409 | 3.35E-52 | -1.69E-46 |
| MS.gene051171 | MS.gene29791 | 0.85218 | 5.47E-61 | -1.69E-46 |
| MS.gene051240 | MS.gene29791 | 0.832064 | 1.17E-55 | -1.69E-46 |
| MS.gene051242 | MS.gene29791 | 0.839417 | 1.60E-57 | -1.69E-46 |
| MS.gene051244 | MS.gene29791 | 0.815446 | 9.21E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene29791 | 0.800095 | 1.69E-48 | -1.69E-46 |
| MS.gene051983 | MS.gene29791 | 0.842109 | 3.16E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene29791 | -0.815221 | 1.03E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene29791 | 0.802144 | 6.45E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene29791 | 0.82258 | 2.20E-53 | -1.69E-46 |
| MS.gene052469 | MS.gene29791 | 0.83699 | 6.77E-57 | -1.69E-46 |
| MS.gene052600 | MS.gene29791 | 0.845319 | 4.37E-59 | -1.69E-46 |
| MS.gene053330 | MS.gene29791 | 0.86196 | 7.11E-64 | -1.69E-46 |
| MS.gene053557 | MS.gene29791 | 0.807288 | 5.44E-50 | -1.69E-46 |
| MS.gene053907 | MS.gene29791 | 0.813305 | 2.74E-51 | -1.69E-46 |
| MS.gene053928 | MS.gene29791 | 0.818463 | 1.93E-52 | -1.69E-46 |
| MS.gene053971 | MS.gene29791 | 0.825566 | 4.37E-54 | -1.69E-46 |
| MS.gene054349 | MS.gene29791 | 0.807238 | 5.57E-50 | -1.69E-46 |
| MS.gene054719 | MS.gene29791 | 0.84423 | 8.60E-59 | -1.69E-46 |
| MS.gene055539 | MS.gene29791 | 0.817602 | 3.03E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene29791 | 0.860071 | 2.67E-63 | -1.69E-46 |
| MS.gene05556 | MS.gene29791 | 0.809108 | 2.23E-50 | -1.69E-46 |
| MS.gene055971 | MS.gene29791 | 0.824473 | 7.92E-54 | -1.69E-46 |
| MS.gene056305 | MS.gene29791 | 0.830289 | 3.19E-55 | -1.69E-46 |
| MS.gene056633 | MS.gene29791 | 0.823938 | 1.06E-53 | -1.69E-46 |
| MS.gene056664 | MS.gene29791 | 0.833538 | 5.03E-56 | -1.69E-46 |
| MS.gene056723 | MS.gene29791 | 0.806247 | 9.02E-50 | -1.69E-46 |
| MS.gene056899 | MS.gene29791 | -0.808374 | 3.20E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene29791 | 0.830505 | 2.83E-55 | -1.69E-46 |
| MS.gene057121 | MS.gene29791 | 0.806491 | 8.02E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene29791 | 0.816257 | 6.07E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene29791 | 0.823025 | 1.73E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene29791 | 0.808021 | 3.80E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene29791 | 0.873425 | 1.49E-67 | -1.69E-46 |
| MS.gene058276 | MS.gene29791 | 0.879708 | 9.99E-70 | -1.69E-46 |
| MS.gene058743 | MS.gene29791 | 0.855161 | 7.59E-62 | -1.69E-46 |
| MS.gene058746 | MS.gene29791 | 0.829424 | 5.19E-55 | -1.69E-46 |
| MS.gene058833 | MS.gene29791 | 0.816614 | 5.05E-52 | -1.69E-46 |
| MS.gene059247 | MS.gene29791 | 0.851121 | 1.09E-60 | -1.69E-46 |
| MS.gene05984 | MS.gene29791 | 0.815119 | 1.09E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene29791 | 0.811839 | 5.73E-51 | -1.69E-46 |
| MS.gene060083 | MS.gene29791 | 0.851449 | 8.81E-61 | -1.69E-46 |
| MS.gene060407 | MS.gene29791 | 0.867868 | 9.97E-66 | -1.69E-46 |
| MS.gene061159 | MS.gene29791 | 0.804371 | 2.23E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29791.t1 | MTR_3g089020 | 97.654 | 810 | 19 | 0 | 1 | 810 | 58 | 867 | 0.0 | 1628 |
| MS.gene29791.t1 | MTR_4g103770 | 86.720 | 625 | 79 | 2 | 1 | 625 | 62 | 682 | 0.0 | 1127 |
| MS.gene29791.t1 | MTR_7g014365 | 88.372 | 43 | 5 | 0 | 659 | 701 | 203 | 245 | 2.32e-15 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29791.t1 | AT5G63420 | 72.443 | 831 | 198 | 7 | 1 | 809 | 90 | 911 | 0.0 | 1194 |
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAAAGATGCAAGATTTA+AGG | 0.149877 | 3.4:+73437704 | None:intergenic |
| GCCTTAAATCTTGCATCTTT+TGG | 0.181875 | 3.4:-73437705 | MS.gene29791:CDS |
| TTGGCTGGAAACACCTTAAA+AGG | 0.186376 | 3.4:-73436227 | MS.gene29791:CDS |
| TATTTGTTGGCATGTCTTTA+AGG | 0.202740 | 3.4:-73438778 | MS.gene29791:CDS |
| CAGGGGAATCGGATGAATTT+TGG | 0.207468 | 3.4:-73435069 | MS.gene29791:CDS |
| CAAATCTTTGTGGACATCTT+TGG | 0.240355 | 3.4:-73434723 | MS.gene29791:CDS |
| ATCCATGGATGAACATAAAA+AGG | 0.267555 | 3.4:-73435913 | MS.gene29791:CDS |
| ATTGGTGGTTTGGGTGAAAT+TGG | 0.278425 | 3.4:-73441812 | MS.gene29791:CDS |
| GATTCACTGGTTGTCCTTCC+AGG | 0.285382 | 3.4:+73439036 | None:intergenic |
| CAAGTGATTCATGCTCCTTC+AGG | 0.286343 | 3.4:+73436779 | None:intergenic |
| TTTCTTATAAATGTTGTATC+AGG | 0.286634 | 3.4:+73441403 | None:intergenic |
| CCATTACGTGTTCTTCCTAT+TGG | 0.296621 | 3.4:-73441830 | MS.gene29791:CDS |
| GAAGGCGATTTATCTGATTC+AGG | 0.300145 | 3.4:-73435088 | MS.gene29791:CDS |
| AAAGCTGCTGCCGATTTAAC+TGG | 0.300725 | 3.4:-73438916 | MS.gene29791:CDS |
| ATACAACATTTATAAGAAAA+TGG | 0.305949 | 3.4:-73441399 | MS.gene29791:CDS |
| CCTTGGAAAAGAAAATTTAC+AGG | 0.307438 | 3.4:-73436546 | MS.gene29791:intron |
| GATGTAGATTTGATGCAAAC+TGG | 0.345615 | 3.4:+73438953 | None:intergenic |
| TGAAAGGAAGGATGGCTCTC+TGG | 0.354049 | 3.4:-73434802 | MS.gene29791:CDS |
| CTTCTAAATGTTGATATTCC+AGG | 0.354594 | 3.4:+73435936 | None:intergenic |
| AATAGAAGGGTTCTTTCTAA+TGG | 0.365515 | 3.4:-73436578 | MS.gene29791:CDS |
| TGTTCTTCCTATTGGTGGTT+TGG | 0.367711 | 3.4:-73441822 | MS.gene29791:CDS |
| ATCTTTGGCACTTAAATATG+AGG | 0.370175 | 3.4:-73434708 | MS.gene29791:intron |
| ATCATATCGGTGCGTTGCCT+TGG | 0.376836 | 3.4:-73441333 | MS.gene29791:CDS |
| TTATTATATCAGGTATTTGT+TGG | 0.378839 | 3.4:-73438791 | MS.gene29791:intron |
| ATCGCAATGGCAATTACTTC+GGG | 0.381041 | 3.4:+73436026 | None:intergenic |
| ATTTCCATTCAATTTGTTGC+CGG | 0.381999 | 3.4:+73433753 | None:intergenic |
| GTTCTTCCTATTGGTGGTTT+GGG | 0.382494 | 3.4:-73441821 | MS.gene29791:CDS |
| TTTCACACTTGAGAAATAGA+AGG | 0.384172 | 3.4:-73436592 | MS.gene29791:CDS |
| GCATTTATTACCAGAGTTGA+TGG | 0.385749 | 3.4:+73438710 | None:intergenic |
| ATGCACCAGGTTATTAAGAA+TGG | 0.386575 | 3.4:-73436629 | MS.gene29791:intron |
| TTGTTTGCAGTGTGGTGGAC+TGG | 0.387215 | 3.4:+73435886 | None:intergenic |
| GGCAAATCCCACGCTGGTCC+TGG | 0.387256 | 3.4:-73435954 | MS.gene29791:CDS |
| GAATGAATTGTATGCTTGTT+GGG | 0.394201 | 3.4:-73441790 | MS.gene29791:CDS |
| CAACTTTCTCCCAGTTAAAT+CGG | 0.401807 | 3.4:+73438906 | None:intergenic |
| CTAGTTCTTCGTTGTTCTGA+TGG | 0.406463 | 3.4:-73439877 | MS.gene29791:CDS |
| TAGATGGCATCATTGTGATT+AGG | 0.412496 | 3.4:-73436360 | MS.gene29791:intron |
| AATGAAAACTTACACACATC+TGG | 0.415170 | 3.4:-73437346 | MS.gene29791:CDS |
| AGAATGAGAATTGCATTAGA+TGG | 0.417290 | 3.4:-73436376 | MS.gene29791:CDS |
| ATTGGATCAACAATAGTTAT+GGG | 0.421279 | 3.4:-73437373 | MS.gene29791:CDS |
| GATTGGATCAACAATAGTTA+TGG | 0.427638 | 3.4:-73437374 | MS.gene29791:CDS |
| CTATTCTTCACACTGGGGAT+TGG | 0.430987 | 3.4:-73439852 | MS.gene29791:CDS |
| ATCACACGGGACTCATTACC+AGG | 0.431628 | 3.4:+73437421 | None:intergenic |
| GAATTACCACAAGATGTCTA+TGG | 0.437596 | 3.4:-73436196 | MS.gene29791:CDS |
| GAGAAAGAGACCACTACAAC+TGG | 0.440855 | 3.4:-73435115 | MS.gene29791:CDS |
| CATTTGAGATAGAACCAATC+AGG | 0.444198 | 3.4:-73439930 | MS.gene29791:CDS |
| CTGGACAATGCAAATCTTTG+TGG | 0.444645 | 3.4:-73434733 | MS.gene29791:CDS |
| ACATGCATATCGTGGAGAAT+TGG | 0.445598 | 3.4:-73437323 | MS.gene29791:intron |
| GAATCACTTGGAAAATCAAC+TGG | 0.447489 | 3.4:-73436766 | MS.gene29791:CDS |
| TCTAATGGTTTCATTTCCCT+TGG | 0.447711 | 3.4:-73436563 | MS.gene29791:CDS |
| TATCGCAATGGCAATTACTT+CGG | 0.447759 | 3.4:+73436025 | None:intergenic |
| ACCAGAGTTGATGGGTCAAA+TGG | 0.450689 | 3.4:+73438719 | None:intergenic |
| TCATATCGGTGCGTTGCCTT+GGG | 0.452996 | 3.4:-73441332 | MS.gene29791:intron |
| GGAATGAATTGTATGCTTGT+TGG | 0.453098 | 3.4:-73441791 | MS.gene29791:CDS |
| TTACGTGTTCTTCCTATTGG+TGG | 0.453954 | 3.4:-73441827 | MS.gene29791:CDS |
| GAGATAAACACAAAATTGTC+TGG | 0.454789 | 3.4:-73435975 | MS.gene29791:CDS |
| TTTATCTGATTCAGGGGAAT+CGG | 0.455159 | 3.4:-73435080 | MS.gene29791:CDS |
| AGTGATGGTGACAAAGCATT+TGG | 0.457642 | 3.4:-73436427 | MS.gene29791:CDS |
| ATCAGACATTTCTTCAGACT+TGG | 0.457953 | 3.4:+73434931 | None:intergenic |
| CTGATTGGTTCTATCTCAAA+TGG | 0.459887 | 3.4:+73439931 | None:intergenic |
| ATTTCACCCAAACCACCAAT+AGG | 0.461698 | 3.4:+73441815 | None:intergenic |
| ATTGACGAGACACCACTTGA+TGG | 0.463031 | 3.4:-73439742 | MS.gene29791:CDS |
| GTTACAATAAGCAGATCCTT+AGG | 0.463234 | 3.4:+73437855 | None:intergenic |
| TCAACTGATGATGCAATGAA+TGG | 0.463811 | 3.4:+73435043 | None:intergenic |
| GATCTGCTTATTGTAACAAC+TGG | 0.465028 | 3.4:-73437849 | MS.gene29791:CDS |
| TCAACAAATGTGCTCTCACC+TGG | 0.467892 | 3.4:-73439054 | MS.gene29791:CDS |
| GATGGGATCAGCAGAAGTCC+TGG | 0.469354 | 3.4:-73434752 | MS.gene29791:CDS |
| CCTTGGTAAGTTTGAAAGCA+TGG | 0.473674 | 3.4:+73437676 | None:intergenic |
| ATGAATCGCATATCAGAGAT+TGG | 0.474239 | 3.4:-73437391 | MS.gene29791:CDS |
| TCTAATCAGGAGATCAAGAA+TGG | 0.475221 | 3.4:-73433843 | MS.gene29791:intron |
| CGATTTAACTGGGAGAAAGT+TGG | 0.476469 | 3.4:-73438905 | MS.gene29791:intron |
| AATCAGCTTCTTGACTTCCT+CGG | 0.476513 | 3.4:+73434862 | None:intergenic |
| CTCAGAGCTTGTTGGCTGAT+GGG | 0.478275 | 3.4:-73434769 | MS.gene29791:CDS |
| CACAAAGATTTGCATTGTCC+AGG | 0.480128 | 3.4:+73434734 | None:intergenic |
| TCTCAGAGCTTGTTGGCTGA+TGG | 0.481622 | 3.4:-73434770 | MS.gene29791:CDS |
| ATAGAATGAGTCACCCTGAT+TGG | 0.482517 | 3.4:+73439916 | None:intergenic |
| TTGGAAAATCAACTGGCATT+CGG | 0.486197 | 3.4:-73436759 | MS.gene29791:CDS |
| TCATCAGGTCATCCCAGCAT+TGG | 0.486824 | 3.4:-73440360 | MS.gene29791:intron |
| ATACAAAACAATATCTTCCT+TGG | 0.488079 | 3.4:+73437659 | None:intergenic |
| TCAAGAAGCTGATTGATTTG+CGG | 0.490229 | 3.4:-73434853 | MS.gene29791:CDS |
| CAATTCTCATTCTTTCATCA+AGG | 0.490742 | 3.4:+73436386 | None:intergenic |
| GACAAAGCATTTGGTACATC+CGG | 0.492657 | 3.4:-73436418 | MS.gene29791:CDS |
| ACAAAGAACAAGTTTGTCGC+TGG | 0.495185 | 3.4:-73439955 | MS.gene29791:CDS |
| GATGTCTATGGCTGGACAAA+GGG | 0.497228 | 3.4:-73436184 | MS.gene29791:CDS |
| AAGGCGATTTATCTGATTCA+GGG | 0.497243 | 3.4:-73435087 | MS.gene29791:CDS |
| CAAAAGTCCACTGGCTCACA+TGG | 0.497633 | 3.4:-73436105 | MS.gene29791:CDS |
| CATTCTATTCCTGACTGTTG+TGG | 0.499925 | 3.4:-73439901 | MS.gene29791:CDS |
| ACCTCTTGTTTGCAGTGTGG+TGG | 0.502821 | 3.4:+73435881 | None:intergenic |
| TTAGAAGCAGCTTGGAAGGA+TGG | 0.505273 | 3.4:-73438749 | MS.gene29791:CDS |
| AGGCACATTTCAGCTTCAAA+AGG | 0.507331 | 3.4:-73438991 | MS.gene29791:CDS |
| GATTTAAAGTTGTGAAAGGA+AGG | 0.508605 | 3.4:-73434814 | MS.gene29791:CDS |
| GAAAGGAAGGATGGCTCTCT+GGG | 0.509095 | 3.4:-73434801 | MS.gene29791:CDS |
| ACATTTCAGCTTCAAAAGGA+AGG | 0.510397 | 3.4:-73438987 | MS.gene29791:CDS |
| CTGAAGGAGCATGAATCACT+TGG | 0.511676 | 3.4:-73436778 | MS.gene29791:CDS |
| CGTTATATCCTCATTGATGC+TGG | 0.516389 | 3.4:-73441758 | MS.gene29791:CDS |
| AACAAGTATTCTCCATGTAC+AGG | 0.517823 | 3.4:+73436802 | None:intergenic |
| TGGCTGGAAACACCTTAAAA+GGG | 0.519920 | 3.4:-73436226 | MS.gene29791:CDS |
| AGAGATATCTCAGAGCTTGT+TGG | 0.522256 | 3.4:-73434777 | MS.gene29791:CDS |
| TGCATCTTCCTTTACAATGG+AGG | 0.526281 | 3.4:-73440318 | MS.gene29791:intron |
| TATTGATGCTTATGCACCTA+AGG | 0.528326 | 3.4:-73437871 | MS.gene29791:CDS |
| GACAGATTTAAAGTTGTGAA+AGG | 0.528331 | 3.4:-73434818 | MS.gene29791:CDS |
| GCATCAAATCTACATCGGAT+TGG | 0.529989 | 3.4:-73438946 | MS.gene29791:CDS |
| TTCATCAAGGAAGAGTTCAC+CGG | 0.530019 | 3.4:+73436399 | None:intergenic |
| TCAATTTGTCAGGTTATCCC+TGG | 0.531224 | 3.4:-73437439 | MS.gene29791:intron |
| CAGCATCAATGAGGATATAA+CGG | 0.531872 | 3.4:+73441759 | None:intergenic |
| GGACATACTTAGAAGCAGCT+TGG | 0.532316 | 3.4:-73438757 | MS.gene29791:CDS |
| ATCAACATTTAGAAGATCCA+TGG | 0.532606 | 3.4:-73435928 | MS.gene29791:CDS |
| TTGACGAGACACCACTTGAT+GGG | 0.533040 | 3.4:-73439741 | MS.gene29791:CDS |
| TCCATTTGACCCATCAACTC+TGG | 0.534282 | 3.4:-73438720 | MS.gene29791:intron |
| AGAACTAGTCCACAACAGTC+AGG | 0.535143 | 3.4:+73439892 | None:intergenic |
| TACCACAAGATGTCTATGGC+TGG | 0.535188 | 3.4:-73436192 | MS.gene29791:CDS |
| TCTTCACACTGGGGATTGGA+AGG | 0.536502 | 3.4:-73439848 | MS.gene29791:intron |
| CATGGTCATGAAGATCATAT+CGG | 0.538341 | 3.4:-73441346 | MS.gene29791:CDS |
| GGTGTATTGGAATCCAATGC+TGG | 0.538955 | 3.4:+73440347 | None:intergenic |
| GCCGAATACCTCCATTGTAA+AGG | 0.539763 | 3.4:+73440310 | None:intergenic |
| TAAAGTTGTGAAAGGAAGGA+TGG | 0.540086 | 3.4:-73434810 | MS.gene29791:CDS |
| ATCTGCCACAACAGATTCAC+TGG | 0.540628 | 3.4:+73439023 | None:intergenic |
| TTGTGGCAGATTCATTATTG+AGG | 0.541904 | 3.4:-73439011 | MS.gene29791:CDS |
| AGATTCTGTTCAACGTAGGA+TGG | 0.542555 | 3.4:-73441882 | MS.gene29791:CDS |
| ATTAAGAATGGAGAGATGCT+TGG | 0.543149 | 3.4:-73436617 | MS.gene29791:CDS |
| ATACTTAGAAGCAGCTTGGA+AGG | 0.544162 | 3.4:-73438753 | MS.gene29791:CDS |
| TTAGAGGAACTCTCTAAAGA+AGG | 0.550937 | 3.4:-73439697 | MS.gene29791:CDS |
| CAAAGAACAAGTTTGTCGCT+GGG | 0.552337 | 3.4:-73439954 | MS.gene29791:CDS |
| CATTTCAGCTTCAAAAGGAA+GGG | 0.552543 | 3.4:-73438986 | MS.gene29791:CDS |
| GCCATTGCGATAGAAAATCC+TGG | 0.555157 | 3.4:-73436014 | MS.gene29791:CDS |
| CTAATCAGGAGATCAAGAAT+GGG | 0.558723 | 3.4:-73433842 | MS.gene29791:intron |
| CTGTCCCGTCAAAAGTCCAC+TGG | 0.559295 | 3.4:-73436114 | MS.gene29791:CDS |
| CATTTATTACCAGAGTTGAT+GGG | 0.561091 | 3.4:+73438711 | None:intergenic |
| GTCGGAGATGTTGAGGAAGA+TGG | 0.562067 | 3.4:-73436072 | MS.gene29791:CDS |
| TCACAACTTTAAATCTGTCA+CGG | 0.562346 | 3.4:+73434822 | None:intergenic |
| AGATGTTGAGGAAGATGGTG+AGG | 0.567241 | 3.4:-73436067 | MS.gene29791:CDS |
| TTGGCAATATCTTGAGGACA+TGG | 0.567651 | 3.4:-73433802 | MS.gene29791:CDS |
| GAACTGTGTCGGAGATGTTG+AGG | 0.569522 | 3.4:-73436079 | MS.gene29791:CDS |
| ATGGAACTATTCTTCACACT+GGG | 0.571280 | 3.4:-73439858 | MS.gene29791:CDS |
| GTCCAGCCATAGACATCTTG+TGG | 0.573025 | 3.4:+73436190 | None:intergenic |
| ACCACTACAACTGGAGCTGA+AGG | 0.573383 | 3.4:-73435106 | MS.gene29791:CDS |
| CTCTAAAGAAGGAGTAACAT+TGG | 0.574233 | 3.4:-73439686 | MS.gene29791:intron |
| TTCACACTTGAGAAATAGAA+GGG | 0.575027 | 3.4:-73436591 | MS.gene29791:CDS |
| AGATGTCTATGGCTGGACAA+AGG | 0.582028 | 3.4:-73436185 | MS.gene29791:CDS |
| CAATGGTTATGTTTCACGAA+AGG | 0.585188 | 3.4:-73435002 | MS.gene29791:CDS |
| GCCTTCAGCTCCAGTTGTAG+TGG | 0.589034 | 3.4:+73435105 | None:intergenic |
| GTTCTTTCCATGTGAGCCAG+TGG | 0.589970 | 3.4:+73436098 | None:intergenic |
| AAGCTGCTGCCGATTTAACT+GGG | 0.591068 | 3.4:-73438915 | MS.gene29791:CDS |
| TGGTAATGAGTCCCGTGTGA+TGG | 0.593761 | 3.4:-73437419 | MS.gene29791:CDS |
| CCAATAGGAAGAACACGTAA+TGG | 0.600542 | 3.4:+73441830 | None:intergenic |
| AGCAGCTTGGAAGGATGGAA+AGG | 0.602363 | 3.4:-73438744 | MS.gene29791:CDS |
| TCACATGGAAAGAACTGTGT+CGG | 0.607611 | 3.4:-73436090 | MS.gene29791:CDS |
| CCATGCTTTCAAACTTACCA+AGG | 0.609185 | 3.4:-73437676 | MS.gene29791:CDS |
| GACAACCAGTGAATCTGTTG+TGG | 0.610763 | 3.4:-73439028 | MS.gene29791:CDS |
| TCCACCACACTGCAAACAAG+AGG | 0.611195 | 3.4:-73435882 | MS.gene29791:intron |
| GTCTGAAGAAATGTCTGATG+CGG | 0.611515 | 3.4:-73434927 | MS.gene29791:CDS |
| CAAATGTGCTCTCACCTGGA+AGG | 0.615112 | 3.4:-73439050 | MS.gene29791:CDS |
| GATGGAACTATTCTTCACAC+TGG | 0.616053 | 3.4:-73439859 | MS.gene29791:CDS |
| AATATCTTGAGGACATGGAA+AGG | 0.619122 | 3.4:-73433797 | MS.gene29791:CDS |
| GATGATGGCATTGACACGGA+AGG | 0.627007 | 3.4:-73435148 | MS.gene29791:CDS |
| TGGAGAATACTTGTTCCTGA+AGG | 0.627983 | 3.4:-73436794 | MS.gene29791:CDS |
| TGCAGATGATGGCATTGACA+CGG | 0.630101 | 3.4:-73435152 | MS.gene29791:intron |
| GTTACCTCTTGTTTGCAGTG+TGG | 0.633512 | 3.4:+73435878 | None:intergenic |
| ATGTAGATTTGATGCAAACT+GGG | 0.634137 | 3.4:+73438954 | None:intergenic |
| GATTCATCATTTCCATCACA+CGG | 0.639799 | 3.4:+73437407 | None:intergenic |
| ATTTGAGATAGAACCAATCA+GGG | 0.643383 | 3.4:-73439929 | MS.gene29791:CDS |
| ATTCATCATTTCCATCACAC+GGG | 0.645095 | 3.4:+73437408 | None:intergenic |
| TTGATATTCCAGGACCAGCG+TGG | 0.651033 | 3.4:+73435946 | None:intergenic |
| AGGCGATTTATCTGATTCAG+GGG | 0.651319 | 3.4:-73435086 | MS.gene29791:CDS |
| ATTGTCTAGTGATGAAACAC+CGG | 0.652259 | 3.4:-73433772 | MS.gene29791:CDS |
| TGATATTCCAGGACCAGCGT+GGG | 0.657450 | 3.4:+73435947 | None:intergenic |
| GTGTATTGGAATCCAATGCT+GGG | 0.657667 | 3.4:+73440348 | None:intergenic |
| AAATCAATCAAAGCAAACAA+TGG | 0.658404 | 3.4:-73435019 | MS.gene29791:CDS |
| TTGGATCAACAATAGTTATG+GGG | 0.659409 | 3.4:-73437372 | MS.gene29791:CDS |
| ACATCTGGACATGCATATCG+TGG | 0.659861 | 3.4:-73437331 | MS.gene29791:CDS |
| ACATGATACCAGCATCAATG+AGG | 0.660800 | 3.4:+73441750 | None:intergenic |
| AGTTTGCATCAAATCTACAT+CGG | 0.660918 | 3.4:-73438951 | MS.gene29791:CDS |
| TGGAAGATTCTGTTCAACGT+AGG | 0.664297 | 3.4:-73441886 | MS.gene29791:CDS |
| TTGTCTGGCAAATCCCACGC+TGG | 0.665079 | 3.4:-73435960 | MS.gene29791:CDS |
| AAGATGGTGAGGAAGTACAG+TGG | 0.672062 | 3.4:-73436056 | MS.gene29791:CDS |
| GAAGCACTTGTTATAACACA+TGG | 0.674931 | 3.4:-73441364 | MS.gene29791:CDS |
| TGAGGAAGTACAGTGGTAAG+CGG | 0.677242 | 3.4:-73436049 | MS.gene29791:CDS |
| ATGCAGTTGAAATATAGTGA+TGG | 0.680617 | 3.4:-73436442 | MS.gene29791:intron |
| GCAAGATTTAAGGCAGCACG+TGG | 0.681321 | 3.4:+73437714 | None:intergenic |
| TGTACAGGAAGAAAATGTTG+CGG | 0.705564 | 3.4:+73436817 | None:intergenic |
| CAACTTTAAATCTGTCACGG+AGG | 0.723247 | 3.4:+73434825 | None:intergenic |
| ATAGGAAGAACACGTAATGG+CGG | 0.726743 | 3.4:+73441833 | None:intergenic |
| TCACACGGGACTCATTACCA+GGG | 0.727328 | 3.4:+73437422 | None:intergenic |
| TGGAACTATTCTTCACACTG+GGG | 0.745314 | 3.4:-73439857 | MS.gene29791:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 73433761 | 73441909 | 73433761 | ID=MS.gene29791 |
| chr3.4 | mRNA | 73433761 | 73441909 | 73433761 | ID=MS.gene29791.t1;Parent=MS.gene29791 |
| chr3.4 | exon | 73441743 | 73441909 | 73441743 | ID=MS.gene29791.t1.exon1;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73441743 | 73441909 | 73441743 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73441333 | 73441456 | 73441333 | ID=MS.gene29791.t1.exon2;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73441333 | 73441456 | 73441333 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73440319 | 73440375 | 73440319 | ID=MS.gene29791.t1.exon3;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73440319 | 73440375 | 73440319 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73439849 | 73440040 | 73439849 | ID=MS.gene29791.t1.exon4;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73439849 | 73440040 | 73439849 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73439687 | 73439764 | 73439687 | ID=MS.gene29791.t1.exon5;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73439687 | 73439764 | 73439687 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73438906 | 73439088 | 73438906 | ID=MS.gene29791.t1.exon6;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73438906 | 73439088 | 73438906 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73438721 | 73438801 | 73438721 | ID=MS.gene29791.t1.exon7;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73438721 | 73438801 | 73438721 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73437842 | 73437907 | 73437842 | ID=MS.gene29791.t1.exon8;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73437842 | 73437907 | 73437842 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73437650 | 73437742 | 73437650 | ID=MS.gene29791.t1.exon9;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73437650 | 73437742 | 73437650 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73437324 | 73437449 | 73437324 | ID=MS.gene29791.t1.exon10;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73437324 | 73437449 | 73437324 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73436750 | 73436863 | 73436750 | ID=MS.gene29791.t1.exon11;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73436750 | 73436863 | 73436750 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73436547 | 73436642 | 73436547 | ID=MS.gene29791.t1.exon12;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73436547 | 73436642 | 73436547 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73436361 | 73436458 | 73436361 | ID=MS.gene29791.t1.exon13;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73436361 | 73436458 | 73436361 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73435883 | 73436283 | 73435883 | ID=MS.gene29791.t1.exon14;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73435883 | 73436283 | 73435883 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73434709 | 73435169 | 73434709 | ID=MS.gene29791.t1.exon15;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73434709 | 73435169 | 73434709 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| chr3.4 | exon | 73433761 | 73433856 | 73433761 | ID=MS.gene29791.t1.exon16;Parent=MS.gene29791.t1 |
| chr3.4 | CDS | 73433761 | 73433856 | 73433761 | ID=cds.MS.gene29791.t1;Parent=MS.gene29791.t1 |
| Gene Sequence |
| Protein sequence |
