Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33160.t1 | XP_013465830.1 | 96.6 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 3.80E-124 | 454.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33160.t1 | O94675 | 24.8 | 218 | 122 | 7 | 50 | 232 | 59 | 269 | 2.6e-12 | 73.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33160.t1 | A0A072VE84 | 96.6 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 2.7e-124 | 454.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049756 | MS.gene33160 | 0.811932 | 5.47E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene33160 | 0.822646 | 2.12E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene33160 | 0.834743 | 2.51E-56 | -1.69E-46 |
| MS.gene050623 | MS.gene33160 | -0.819721 | 1.00E-52 | -1.69E-46 |
| MS.gene051245 | MS.gene33160 | 0.823772 | 1.16E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene33160 | 0.800248 | 1.58E-48 | -1.69E-46 |
| MS.gene051633 | MS.gene33160 | 0.826165 | 3.15E-54 | -1.69E-46 |
| MS.gene051700 | MS.gene33160 | 0.805757 | 1.14E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene33160 | 0.80659 | 7.64E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene33160 | 0.80996 | 1.46E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene33160 | 0.80766 | 4.54E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene33160 | 0.816994 | 4.15E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene33160 | 0.822921 | 1.83E-53 | -1.69E-46 |
| MS.gene052856 | MS.gene33160 | 0.803689 | 3.09E-49 | -1.69E-46 |
| MS.gene052858 | MS.gene33160 | 0.80952 | 1.82E-50 | -1.69E-46 |
| MS.gene052860 | MS.gene33160 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene055603 | MS.gene33160 | 0.806807 | 6.87E-50 | -1.69E-46 |
| MS.gene056552 | MS.gene33160 | 0.82816 | 1.05E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene33160 | 0.822235 | 2.64E-53 | -1.69E-46 |
| MS.gene057057 | MS.gene33160 | 0.836691 | 8.07E-57 | -1.69E-46 |
| MS.gene057094 | MS.gene33160 | 0.800326 | 1.52E-48 | -1.69E-46 |
| MS.gene057140 | MS.gene33160 | 0.839394 | 1.63E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene33160 | 0.814613 | 1.41E-51 | -1.69E-46 |
| MS.gene058182 | MS.gene33160 | 0.816124 | 6.50E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene33160 | 0.85304 | 3.11E-61 | -1.69E-46 |
| MS.gene058549 | MS.gene33160 | 0.80385 | 2.86E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene33160 | 0.839352 | 1.67E-57 | -1.69E-46 |
| MS.gene059249 | MS.gene33160 | 0.817436 | 3.30E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene33160 | 0.810469 | 1.14E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene33160 | 0.81954 | 1.10E-52 | -1.69E-46 |
| MS.gene06011 | MS.gene33160 | 0.807581 | 4.71E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene33160 | 0.826841 | 2.17E-54 | -1.69E-46 |
| MS.gene060586 | MS.gene33160 | 0.824739 | 6.86E-54 | -1.69E-46 |
| MS.gene060619 | MS.gene33160 | 0.80071 | 1.27E-48 | -1.69E-46 |
| MS.gene060907 | MS.gene33160 | 0.918941 | 8.36E-87 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33160.t1 | MTR_1g013120 | 96.567 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 2.88e-170 | 468 |
| MS.gene33160.t1 | MTR_4g006560 | 43.069 | 202 | 106 | 6 | 36 | 233 | 40 | 236 | 2.15e-54 | 174 |
| MS.gene33160.t1 | MTR_7g063520 | 30.380 | 237 | 146 | 8 | 11 | 233 | 23 | 254 | 1.43e-21 | 90.1 |
| MS.gene33160.t1 | MTR_5g080880 | 31.381 | 239 | 146 | 9 | 4 | 232 | 24 | 254 | 1.01e-20 | 89.4 |
| MS.gene33160.t1 | MTR_3g007690 | 63.889 | 72 | 13 | 2 | 1 | 71 | 1 | 60 | 7.01e-20 | 85.5 |
| MS.gene33160.t1 | MTR_5g080870 | 29.143 | 175 | 98 | 7 | 61 | 232 | 68 | 219 | 2.82e-13 | 68.6 |
| MS.gene33160.t1 | MTR_5g093000 | 32.110 | 109 | 68 | 2 | 130 | 232 | 105 | 213 | 2.25e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33160.t1 | AT4G31930 | 54.468 | 235 | 104 | 2 | 1 | 233 | 1 | 234 | 1.36e-90 | 266 |
| MS.gene33160.t1 | AT1G80720 | 42.857 | 231 | 116 | 4 | 10 | 233 | 20 | 241 | 6.33e-61 | 191 |
| MS.gene33160.t1 | AT1G15870 | 42.667 | 225 | 117 | 6 | 17 | 233 | 21 | 241 | 1.86e-59 | 187 |
| MS.gene33160.t1 | AT1G80720 | 45.550 | 191 | 102 | 1 | 43 | 233 | 1 | 189 | 1.92e-59 | 186 |
| MS.gene33160.t1 | AT5G05990 | 29.924 | 264 | 147 | 11 | 1 | 232 | 1 | 258 | 2.47e-21 | 89.7 |
| MS.gene33160.t1 | AT5G02050 | 28.708 | 209 | 128 | 6 | 42 | 233 | 63 | 267 | 3.33e-21 | 89.4 |
| MS.gene33160.t1 | AT3G55605 | 30.488 | 164 | 103 | 4 | 79 | 233 | 97 | 258 | 1.17e-16 | 77.0 |
| MS.gene33160.t1 | AT4G32605 | 36.975 | 119 | 67 | 3 | 120 | 233 | 104 | 219 | 2.31e-15 | 72.8 |
| MS.gene33160.t1 | AT2G39795 | 27.315 | 216 | 132 | 9 | 33 | 233 | 45 | 250 | 1.33e-14 | 71.2 |
| MS.gene33160.t1 | AT2G39790 | 28.125 | 160 | 92 | 7 | 81 | 232 | 95 | 239 | 1.54e-12 | 65.5 |
Find 51 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACCTTGGACCTGATTTC+AGG | 0.173345 | 1.3:-8704155 | MS.gene33160:intron |
| GTTACGATGAAGGGGAAATT+TGG | 0.184899 | 1.3:-8704408 | MS.gene33160:CDS |
| CAAAACTTCTCCTGAATCTT+AGG | 0.262004 | 1.3:+8703462 | None:intergenic |
| GTTGGATTCAAATGGAGATT+TGG | 0.300681 | 1.3:+8704781 | None:intergenic |
| GAGAGAACATTACTGATTCT+AGG | 0.315397 | 1.3:+8704851 | None:intergenic |
| TTACGATGAAGGGGAAATTT+GGG | 0.341454 | 1.3:-8704407 | MS.gene33160:CDS |
| AGGATAGAATTGAACTTCTA+AGG | 0.343544 | 1.3:-8703371 | MS.gene33160:CDS |
| CTCAGCGTGGCCTGATAGTT+TGG | 0.345831 | 1.3:-8704226 | MS.gene33160:CDS |
| ATTGAAGCTACAATGTTTGA+TGG | 0.356300 | 1.3:-8704366 | MS.gene33160:CDS |
| GAATCTGAAGCCTAAGATTC+AGG | 0.365605 | 1.3:-8703472 | MS.gene33160:CDS |
| TTTGAACATGTTCCTGCATA+TGG | 0.377388 | 1.3:-8704342 | MS.gene33160:CDS |
| CGCAAAATGTTGGATTCAAA+TGG | 0.377903 | 1.3:+8704773 | None:intergenic |
| GCATATGGAGATGATAGTTC+AGG | 0.394315 | 1.3:-8704327 | MS.gene33160:CDS |
| TTCTGAACATCCAAACTATC+AGG | 0.406918 | 1.3:+8704216 | None:intergenic |
| CATAATTCAAACCTGAAATC+AGG | 0.448439 | 1.3:+8704144 | None:intergenic |
| TGAATACGCTCCTCCTCATC+AGG | 0.457720 | 1.3:-8704720 | MS.gene33160:intron |
| AATGTTCTCTCTCAAACCTC+AGG | 0.465355 | 1.3:-8704839 | MS.gene33160:CDS |
| ACGGAGAATTCGCAAAATGT+TGG | 0.477227 | 1.3:+8704763 | None:intergenic |
| TCTTCATCTCAGTTTGATTG+TGG | 0.483776 | 1.3:-8704292 | MS.gene33160:CDS |
| ATCGTAACCACTTGCTCACC+AGG | 0.494801 | 1.3:+8704423 | None:intergenic |
| TTGAAGCTACAATGTTTGAT+GGG | 0.509177 | 1.3:-8704365 | MS.gene33160:CDS |
| TGAGCAAGTGGTTACGATGA+AGG | 0.510024 | 1.3:-8704418 | MS.gene33160:CDS |
| CTTGATACTCGATTTCGTTA+CGG | 0.514717 | 1.3:+8704744 | None:intergenic |
| CTGAAATCAGGTCCAAGGTA+AGG | 0.518651 | 1.3:+8704156 | None:intergenic |
| GAGCAAGTGGTTACGATGAA+GGG | 0.521381 | 1.3:-8704417 | MS.gene33160:CDS |
| TGATTGTGGATATATCGAAA+GGG | 0.531126 | 1.3:-8704278 | MS.gene33160:CDS |
| GAACTATCATCTCCATATGC+AGG | 0.542924 | 1.3:+8704330 | None:intergenic |
| CATATGGAGATGATAGTTCA+GGG | 0.543217 | 1.3:-8704326 | MS.gene33160:CDS |
| AACGATTTGAATTCTGTCAC+AGG | 0.543255 | 1.3:+8704462 | None:intergenic |
| TTGATTGTGGATATATCGAA+AGG | 0.546720 | 1.3:-8704279 | MS.gene33160:CDS |
| AATTGAACTTCTAAGGTGGA+TGG | 0.561187 | 1.3:-8703364 | MS.gene33160:CDS |
| TTGCGAGTACTTGGACGCAA+GGG | 0.561929 | 1.3:-8703442 | MS.gene33160:CDS |
| GATTGTGGATATATCGAAAG+GGG | 0.572237 | 1.3:-8704277 | MS.gene33160:CDS |
| GATATATCGAAAGGGGAAGG+TGG | 0.596404 | 1.3:-8704270 | MS.gene33160:CDS |
| AGAATAGTGGGAACCTGATG+AGG | 0.597183 | 1.3:+8704707 | None:intergenic |
| CAAACCTGAAATCAGGTCCA+AGG | 0.599008 | 1.3:+8704151 | None:intergenic |
| TTTGCGAGTACTTGGACGCA+AGG | 0.601738 | 1.3:-8703443 | MS.gene33160:CDS |
| ATAGAATTGAACTTCTAAGG+TGG | 0.601785 | 1.3:-8703368 | MS.gene33160:CDS |
| TGCGAGTACTTGGACGCAAG+GGG | 0.604395 | 1.3:-8703441 | MS.gene33160:CDS |
| AGCAAGTGGTTACGATGAAG+GGG | 0.615389 | 1.3:-8704416 | MS.gene33160:CDS |
| TTTATTGTTGAAGAGAGACC+TGG | 0.619462 | 1.3:-8704441 | MS.gene33160:CDS |
| AGAGAGACCTGGTGAGCAAG+TGG | 0.623326 | 1.3:-8704430 | MS.gene33160:CDS |
| TACGATGAAGGGGAAATTTG+GGG | 0.627192 | 1.3:-8704406 | MS.gene33160:CDS |
| ATGTCGACTAGGCCTTACCT+TGG | 0.627849 | 1.3:-8704168 | MS.gene33160:CDS |
| GTGGATATATCGAAAGGGGA+AGG | 0.628718 | 1.3:-8704273 | MS.gene33160:CDS |
| ATAGTGGGAACCTGATGAGG+AGG | 0.642607 | 1.3:+8704710 | None:intergenic |
| AGCGAGGGAAGATGTCGACT+AGG | 0.671718 | 1.3:-8704179 | MS.gene33160:CDS |
| AGCTCTGTTACTGAAACCTG+AGG | 0.676912 | 1.3:+8704823 | None:intergenic |
| ACACGAGTATATGATGAACA+AGG | 0.706429 | 1.3:-8703391 | MS.gene33160:CDS |
| TAGAATTCGTCTGCTCAGCG+TGG | 0.712888 | 1.3:-8704239 | MS.gene33160:CDS |
| ATATGGAGATGATAGTTCAG+GGG | 0.730665 | 1.3:-8704325 | MS.gene33160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTAAATCAAAAAATTT+TGG | + | chr1.3:8704632-8704651 | None:intergenic | 10.0% |
| !!! | GAGTAAAAAAATAATTTTTT+TGG | - | chr1.3:8703692-8703711 | MS.gene33160:intron | 10.0% |
| !!! | AAAAATAATTTTTTTGGAAG+TGG | - | chr1.3:8703698-8703717 | MS.gene33160:intron | 15.0% |
| !!! | AAAATAATTTTTTTGGAAGT+GGG | - | chr1.3:8703699-8703718 | MS.gene33160:intron | 15.0% |
| !!! | TTTGATCAATTTTGTTATTA+GGG | - | chr1.3:8703582-8703601 | MS.gene33160:intron | 15.0% |
| !!! | TTTTGATCAATTTTGTTATT+AGG | - | chr1.3:8703581-8703600 | MS.gene33160:intron | 15.0% |
| !! | AACATTTCAACTTTATTCAT+TGG | - | chr1.3:8704606-8704625 | MS.gene33160:intron | 20.0% |
| !! | TGAATAAAGTTGAAATGTTT+AGG | + | chr1.3:8704605-8704624 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCATGTAGAATAG+TGG | + | chr1.3:8703555-8703574 | None:intergenic | 20.0% |
| !!! | TTTAAAACTTTGATAGCTTA+AGG | - | chr1.3:8704367-8704386 | MS.gene33160:CDS | 20.0% |
| !!! | TTTTCATCTGTTTAAATTGT+TGG | - | chr1.3:8704745-8704764 | MS.gene33160:CDS | 20.0% |
| !!! | TTTTTTTCATGTAGAATAGT+GGG | + | chr1.3:8703554-8703573 | None:intergenic | 20.0% |
| ! | AACAATCACATTGTGATATT+TGG | - | chr1.3:8704188-8704207 | MS.gene33160:CDS | 25.0% |
| ! | ATATCACAATGTGATTGTTA+TGG | + | chr1.3:8704187-8704206 | None:intergenic | 25.0% |
| !! | CAATTTTACTTACAAAAGCA+CGG | + | chr1.3:8704555-8704574 | None:intergenic | 25.0% |
| AGGATAGAATTGAACTTCTA+AGG | - | chr1.3:8704875-8704894 | MS.gene33160:CDS | 30.0% | |
| ATTGAAGCTACAATGTTTGA+TGG | - | chr1.3:8703880-8703899 | MS.gene33160:intron | 30.0% | |
| CATAATTCAAACCTGAAATC+AGG | + | chr1.3:8704105-8704124 | None:intergenic | 30.0% | |
| CATTGTGATATTTGGTATAG+TGG | - | chr1.3:8704196-8704215 | MS.gene33160:CDS | 30.0% | |
| CCAAACAACAAATGTACAAT+AGG | + | chr1.3:8704142-8704161 | None:intergenic | 30.0% | |
| TGATTGTGGATATATCGAAA+GGG | - | chr1.3:8703968-8703987 | MS.gene33160:intron | 30.0% | |
| TTGAAGCTACAATGTTTGAT+GGG | - | chr1.3:8703881-8703900 | MS.gene33160:intron | 30.0% | |
| TTGATTGTGGATATATCGAA+AGG | - | chr1.3:8703967-8703986 | MS.gene33160:intron | 30.0% | |
| ! | AAAGTTTTCATGTTAAAGCG+AGG | - | chr1.3:8704051-8704070 | MS.gene33160:intron | 30.0% |
| ! | AAGTTTTCATGTTAAAGCGA+GGG | - | chr1.3:8704052-8704071 | MS.gene33160:intron | 30.0% |
| ! | ATAGAATTGAACTTCTAAGG+TGG | - | chr1.3:8704878-8704897 | MS.gene33160:CDS | 30.0% |
| ! | CATTGCAAAACTTTTATCGA+AGG | - | chr1.3:8704676-8704695 | MS.gene33160:intron | 30.0% |
| ! | TGAAATGTTTAGGATCTGTT+AGG | + | chr1.3:8704595-8704614 | None:intergenic | 30.0% |
| !! | ATTGTACATTTGTTGTTTGG+TGG | - | chr1.3:8704142-8704161 | MS.gene33160:intron | 30.0% |
| !! | CCTATTGTACATTTGTTGTT+TGG | - | chr1.3:8704139-8704158 | MS.gene33160:intron | 30.0% |
| !! | TTTTTGGAAGTGGGTAATTT+CGG | - | chr1.3:8703708-8703727 | MS.gene33160:intron | 30.0% |
| AACAAATGTACAATAGGCAC+AGG | + | chr1.3:8704136-8704155 | None:intergenic | 35.0% | |
| AACGATTTGAATTCTGTCAC+AGG | + | chr1.3:8703787-8703806 | None:intergenic | 35.0% | |
| AACTACGCAAAGACTGAATT+TGG | - | chr1.3:8704653-8704672 | MS.gene33160:intron | 35.0% | |
| ACACGAGTATATGATGAACA+AGG | - | chr1.3:8704855-8704874 | MS.gene33160:CDS | 35.0% | |
| ATATGGAGATGATAGTTCAG+GGG | - | chr1.3:8703921-8703940 | MS.gene33160:intron | 35.0% | |
| ATTTGATGCGTTAAGAGTTG+TGG | - | chr1.3:8704263-8704282 | MS.gene33160:CDS | 35.0% | |
| CAAAACTTCTCCTGAATCTT+AGG | + | chr1.3:8704787-8704806 | None:intergenic | 35.0% | |
| CAGTAACCAAAGTGAAAACA+AGG | + | chr1.3:8704459-8704478 | None:intergenic | 35.0% | |
| CATATGGAGATGATAGTTCA+GGG | - | chr1.3:8703920-8703939 | MS.gene33160:intron | 35.0% | |
| CGCAAAATGTTGGATTCAAA+TGG | + | chr1.3:8703476-8703495 | None:intergenic | 35.0% | |
| CTTGATACTCGATTTCGTTA+CGG | + | chr1.3:8703505-8703524 | None:intergenic | 35.0% | |
| GATTGTGGATATATCGAAAG+GGG | - | chr1.3:8703969-8703988 | MS.gene33160:intron | 35.0% | |
| GTTGGATTCAAATGGAGATT+TGG | + | chr1.3:8703468-8703487 | None:intergenic | 35.0% | |
| TCTTCATCTCAGTTTGATTG+TGG | - | chr1.3:8703954-8703973 | MS.gene33160:intron | 35.0% | |
| TTACGATGAAGGGGAAATTT+GGG | - | chr1.3:8703839-8703858 | MS.gene33160:intron | 35.0% | |
| TTCTGAACATCCAAACTATC+AGG | + | chr1.3:8704033-8704052 | None:intergenic | 35.0% | |
| TTTATTGTTGAAGAGAGACC+TGG | - | chr1.3:8703805-8703824 | MS.gene33160:intron | 35.0% | |
| TTTGAACATGTTCCTGCATA+TGG | - | chr1.3:8703904-8703923 | MS.gene33160:intron | 35.0% | |
| ! | CTGTTTAAATTGTTGGTTGC+AGG | - | chr1.3:8704752-8704771 | MS.gene33160:CDS | 35.0% |
| ! | TGATAGCTTAAGGATTTGCT+TGG | - | chr1.3:8704377-8704396 | MS.gene33160:CDS | 35.0% |
| !! | AATTGAACTTCTAAGGTGGA+TGG | - | chr1.3:8704882-8704901 | MS.gene33160:CDS | 35.0% |
| !! | GAGAGAACATTACTGATTCT+AGG | + | chr1.3:8703398-8703417 | None:intergenic | 35.0% |
| !! | GTAATTTCGGGTTAGTGATT+TGG | - | chr1.3:8703721-8703740 | MS.gene33160:intron | 35.0% |
| !! | TTGTTGTTTGGTGGAAATGA+AGG | - | chr1.3:8704151-8704170 | MS.gene33160:intron | 35.0% |
| !! | TTTTGGAAGTGGGTAATTTC+GGG | - | chr1.3:8703709-8703728 | MS.gene33160:intron | 35.0% |
| AATGTTCTCTCTCAAACCTC+AGG | - | chr1.3:8703407-8703426 | MS.gene33160:CDS | 40.0% | |
| ACGGAGAATTCGCAAAATGT+TGG | + | chr1.3:8703486-8703505 | None:intergenic | 40.0% | |
| CACAATTGCAGCTACATCAA+TGG | + | chr1.3:8704296-8704315 | None:intergenic | 40.0% | |
| CATTGATGTAGCTGCAATTG+TGG | - | chr1.3:8704294-8704313 | MS.gene33160:CDS | 40.0% | |
| GAACTATCATCTCCATATGC+AGG | + | chr1.3:8703919-8703938 | None:intergenic | 40.0% | |
| GCATATGGAGATGATAGTTC+AGG | - | chr1.3:8703919-8703938 | MS.gene33160:intron | 40.0% | |
| GTTACGATGAAGGGGAAATT+TGG | - | chr1.3:8703838-8703857 | MS.gene33160:intron | 40.0% | |
| TACGATGAAGGGGAAATTTG+GGG | - | chr1.3:8703840-8703859 | MS.gene33160:intron | 40.0% | |
| TGAATGCCTTCAAAACGACT+AGG | + | chr1.3:8704702-8704721 | None:intergenic | 40.0% | |
| ! | GAATCTGAAGCCTAAGATTC+AGG | - | chr1.3:8704774-8704793 | MS.gene33160:CDS | 40.0% |
| ! | GGATAGTCTCAAGTCTTTTG+TGG | - | chr1.3:8704903-8704922 | MS.gene33160:CDS | 40.0% |
| !!! | ACGACACCTTGTTTTCACTT+TGG | - | chr1.3:8704450-8704469 | MS.gene33160:CDS | 40.0% |
| !!! | TCGTTTTGAAGGCATTCAGT+TGG | - | chr1.3:8704704-8704723 | MS.gene33160:intron | 40.0% |
| AGCAAGTGGTTACGATGAAG+GGG | - | chr1.3:8703830-8703849 | MS.gene33160:intron | 45.0% | |
| AGCTCTGTTACTGAAACCTG+AGG | + | chr1.3:8703426-8703445 | None:intergenic | 45.0% | |
| CAAACCTGAAATCAGGTCCA+AGG | + | chr1.3:8704098-8704117 | None:intergenic | 45.0% | |
| CGACTTTGCAGTCATAGTCA+AGG | - | chr1.3:8704338-8704357 | MS.gene33160:CDS | 45.0% | |
| CTGAAATCAGGTCCAAGGTA+AGG | + | chr1.3:8704093-8704112 | None:intergenic | 45.0% | |
| CTTACCTTGGACCTGATTTC+AGG | - | chr1.3:8704091-8704110 | MS.gene33160:intron | 45.0% | |
| GAGCAAGTGGTTACGATGAA+GGG | - | chr1.3:8703829-8703848 | MS.gene33160:intron | 45.0% | |
| GATATATCGAAAGGGGAAGG+TGG | - | chr1.3:8703976-8703995 | MS.gene33160:intron | 45.0% | |
| GTGGATATATCGAAAGGGGA+AGG | - | chr1.3:8703973-8703992 | MS.gene33160:intron | 45.0% | |
| TGAGCAAGTGGTTACGATGA+AGG | - | chr1.3:8703828-8703847 | MS.gene33160:intron | 45.0% | |
| ! | AGAATAGTGGGAACCTGATG+AGG | + | chr1.3:8703542-8703561 | None:intergenic | 45.0% |
| ! | GGAGAAGTTTTGCGAGTACT+TGG | - | chr1.3:8704795-8704814 | MS.gene33160:CDS | 45.0% |
| ATCGTAACCACTTGCTCACC+AGG | + | chr1.3:8703826-8703845 | None:intergenic | 50.0% | |
| TAGAATTCGTCTGCTCAGCG+TGG | - | chr1.3:8704007-8704026 | MS.gene33160:intron | 50.0% | |
| TGAATACGCTCCTCCTCATC+AGG | - | chr1.3:8703526-8703545 | MS.gene33160:intron | 50.0% | |
| TTGCGAGTACTTGGACGCAA+GGG | - | chr1.3:8704804-8704823 | MS.gene33160:CDS | 50.0% | |
| TTTGCGAGTACTTGGACGCA+AGG | - | chr1.3:8704803-8704822 | MS.gene33160:CDS | 50.0% | |
| ! | ATAGTGGGAACCTGATGAGG+AGG | + | chr1.3:8703539-8703558 | None:intergenic | 50.0% |
| ! | ATGTCGACTAGGCCTTACCT+TGG | - | chr1.3:8704078-8704097 | MS.gene33160:intron | 50.0% |
| !! | CGAAGGCCTAGTCGTTTTGA+AGG | - | chr1.3:8704693-8704712 | MS.gene33160:intron | 50.0% |
| AGAGAGACCTGGTGAGCAAG+TGG | - | chr1.3:8703816-8703835 | MS.gene33160:intron | 55.0% | |
| CTCAGCGTGGCCTGATAGTT+TGG | - | chr1.3:8704020-8704039 | MS.gene33160:intron | 55.0% | |
| GTAGCTGCAATTGTGGTCGC+AGG | - | chr1.3:8704301-8704320 | MS.gene33160:CDS | 55.0% | |
| TGCGAGTACTTGGACGCAAG+GGG | - | chr1.3:8704805-8704824 | MS.gene33160:CDS | 55.0% | |
| ! | AGCGAGGGAAGATGTCGACT+AGG | - | chr1.3:8704067-8704086 | MS.gene33160:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 8703335 | 8704933 | 8703335 | ID=MS.gene33160 |
| chr1.3 | mRNA | 8703335 | 8704933 | 8703335 | ID=MS.gene33160.t1;Parent=MS.gene33160 |
| chr1.3 | exon | 8704721 | 8704933 | 8704721 | ID=MS.gene33160.t1.exon1;Parent=MS.gene33160.t1 |
| chr1.3 | CDS | 8704721 | 8704933 | 8704721 | ID=cds.MS.gene33160.t1;Parent=MS.gene33160.t1 |
| chr1.3 | exon | 8704156 | 8704484 | 8704156 | ID=MS.gene33160.t1.exon2;Parent=MS.gene33160.t1 |
| chr1.3 | CDS | 8704156 | 8704484 | 8704156 | ID=cds.MS.gene33160.t1;Parent=MS.gene33160.t1 |
| chr1.3 | exon | 8703335 | 8703494 | 8703335 | ID=MS.gene33160.t1.exon3;Parent=MS.gene33160.t1 |
| chr1.3 | CDS | 8703335 | 8703494 | 8703335 | ID=cds.MS.gene33160.t1;Parent=MS.gene33160.t1 |
| Gene Sequence |
| Protein sequence |
