Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36245.t1 | XP_003597842.2 | 96.2 | 238 | 9 | 0 | 1 | 238 | 1 | 238 | 7.80E-125 | 456.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36245.t1 | Q8VZT8 | 53.6 | 181 | 79 | 2 | 59 | 238 | 138 | 314 | 1.0e-48 | 194.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36245.t1 | G7IMH8 | 96.2 | 238 | 9 | 0 | 1 | 238 | 1 | 238 | 5.7e-125 | 456.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene36245 | 0.802574 | 5.26E-49 | -1.69E-46 |
| MS.gene049756 | MS.gene36245 | 0.816865 | 4.44E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene36245 | 0.86629 | 3.18E-65 | -1.69E-46 |
| MS.gene051063 | MS.gene36245 | 0.806873 | 6.66E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene36245 | 0.803692 | 3.09E-49 | -1.69E-46 |
| MS.gene051633 | MS.gene36245 | 0.84196 | 3.46E-58 | -1.69E-46 |
| MS.gene051746 | MS.gene36245 | 0.857215 | 1.90E-62 | -1.69E-46 |
| MS.gene051748 | MS.gene36245 | 0.850057 | 2.17E-60 | -1.69E-46 |
| MS.gene051903 | MS.gene36245 | 0.809735 | 1.63E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene36245 | 0.808593 | 2.87E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene36245 | 0.846542 | 2.03E-59 | -1.69E-46 |
| MS.gene052302 | MS.gene36245 | 0.847746 | 9.51E-60 | -1.69E-46 |
| MS.gene052376 | MS.gene36245 | 0.8404 | 8.89E-58 | -1.69E-46 |
| MS.gene052856 | MS.gene36245 | 0.818709 | 1.70E-52 | -1.69E-46 |
| MS.gene052858 | MS.gene36245 | 0.816104 | 6.57E-52 | -1.69E-46 |
| MS.gene052860 | MS.gene36245 | 0.813211 | 2.87E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene36245 | 0.825502 | 4.53E-54 | -1.69E-46 |
| MS.gene053216 | MS.gene36245 | 0.82445 | 8.02E-54 | -1.69E-46 |
| MS.gene053437 | MS.gene36245 | 0.803057 | 4.18E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene36245 | 0.82221 | 2.68E-53 | -1.69E-46 |
| MS.gene055174 | MS.gene36245 | 0.812469 | 4.17E-51 | -1.69E-46 |
| MS.gene055424 | MS.gene36245 | 0.804901 | 1.73E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene36245 | 0.827418 | 1.58E-54 | -1.69E-46 |
| MS.gene056069 | MS.gene36245 | -0.824982 | 6.01E-54 | -1.69E-46 |
| MS.gene056432 | MS.gene36245 | 0.801955 | 7.05E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene36245 | 0.828165 | 1.05E-54 | -1.69E-46 |
| MS.gene057057 | MS.gene36245 | 0.820722 | 5.90E-53 | -1.69E-46 |
| MS.gene057079 | MS.gene36245 | 0.833955 | 3.96E-56 | -1.69E-46 |
| MS.gene057140 | MS.gene36245 | 0.804679 | 1.92E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene36245 | 0.838403 | 2.94E-57 | -1.69E-46 |
| MS.gene057705 | MS.gene36245 | 0.803118 | 4.06E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene36245 | 0.842335 | 2.75E-58 | -1.69E-46 |
| MS.gene058054 | MS.gene36245 | 0.803262 | 3.79E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene36245 | 0.841867 | 3.66E-58 | -1.69E-46 |
| MS.gene058084 | MS.gene36245 | 0.823843 | 1.11E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene36245 | 0.823172 | 1.60E-53 | -1.69E-46 |
| MS.gene058798 | MS.gene36245 | 0.808955 | 2.40E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene36245 | 0.844039 | 9.67E-59 | -1.69E-46 |
| MS.gene06001 | MS.gene36245 | 0.840168 | 1.02E-57 | -1.69E-46 |
| MS.gene060165 | MS.gene36245 | 0.801909 | 7.21E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene36245 | 0.80692 | 6.51E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36245.t1 | MTR_2g103160 | 96.218 | 238 | 9 | 0 | 1 | 238 | 1 | 238 | 3.54e-173 | 476 |
| MS.gene36245.t1 | MTR_6g004800 | 87.395 | 238 | 29 | 1 | 1 | 238 | 1 | 237 | 1.07e-153 | 426 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36245.t1 | AT1G31817 | 54.237 | 177 | 76 | 2 | 63 | 238 | 142 | 314 | 3.73e-64 | 202 |
Find 52 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGATTGGTGGGAATTTC+AGG | 0.127018 | 2.1:-2545032 | MS.gene36245:CDS |
| TCCCTATCCCGCGTAAAATT+TGG | 0.128286 | 2.1:+2545084 | None:intergenic |
| TCTCAGCCTTATTCTCAATT+AGG | 0.186612 | 2.1:+2545049 | None:intergenic |
| TTGGCAGTCTGCAGCCATTA+TGG | 0.260348 | 2.1:+2544590 | None:intergenic |
| AATCAGGGCAAAAGCTTTCT+AGG | 0.277751 | 2.1:-2544810 | MS.gene36245:CDS |
| CTCAGCCTTATTCTCAATTA+GGG | 0.278381 | 2.1:+2545050 | None:intergenic |
| CCCTGATTTCATATCTTTCA+AGG | 0.313093 | 2.1:+2544825 | None:intergenic |
| GGACGAAGATCTAGAAGTTT+GGG | 0.313205 | 2.1:-2544757 | MS.gene36245:CDS |
| TAACTCCCTAATTGAGAATA+AGG | 0.315947 | 2.1:-2545055 | MS.gene36245:CDS |
| AACTAGATACGTCGTTTCTT+TGG | 0.319042 | 2.1:+2544571 | None:intergenic |
| TGGCAGTCTGCAGCCATTAT+GGG | 0.322578 | 2.1:+2544591 | None:intergenic |
| TGGACGAAGATCTAGAAGTT+TGG | 0.345854 | 2.1:-2544758 | MS.gene36245:CDS |
| GAAAATGAAAAGGGTGTTAT+GGG | 0.347824 | 2.1:-2544979 | MS.gene36245:CDS |
| TCCTTGAAAGATATGAAATC+AGG | 0.348721 | 2.1:-2544826 | MS.gene36245:CDS |
| AGAAAATGAAAAGGGTGTTA+TGG | 0.348875 | 2.1:-2544980 | MS.gene36245:CDS |
| GAAACTGCAGGATATGTTAG+AGG | 0.388568 | 2.1:-2545180 | MS.gene36245:intron |
| GTATCTTCAATGTATACAAT+TGG | 0.413544 | 2.1:+2544625 | None:intergenic |
| GTAAAACTTAGTGGCTCTGC+TGG | 0.418753 | 2.1:-2544850 | MS.gene36245:CDS |
| ACAACTCGTCGTCCCCATAA+TGG | 0.428444 | 2.1:-2544604 | MS.gene36245:CDS |
| AAAGGAAATGTAAAACTTAG+TGG | 0.428546 | 2.1:-2544859 | MS.gene36245:CDS |
| TGGTGGGAATTTCAGGAAGA+TGG | 0.430749 | 2.1:-2545025 | MS.gene36245:CDS |
| TCTTCCATTTGCCATGTCCA+TGG | 0.468427 | 2.1:-2547188 | MS.gene36245:CDS |
| GTTACAGTGACCGATTCTAA+AGG | 0.474490 | 2.1:-2544877 | MS.gene36245:CDS |
| AAGTGTAGAAGAAAATGAAA+AGG | 0.475421 | 2.1:-2544989 | MS.gene36245:CDS |
| GTGCAAGCTGGGGTTTGAAC+GGG | 0.482961 | 2.1:-2545149 | MS.gene36245:CDS |
| AGTGTAGAAGAAAATGAAAA+GGG | 0.484709 | 2.1:-2544988 | MS.gene36245:CDS |
| AGATCCATGGACATGGCAAA+TGG | 0.487188 | 2.1:+2547184 | None:intergenic |
| ATTGAGAATAAGGCTGAGAT+TGG | 0.495193 | 2.1:-2545045 | MS.gene36245:CDS |
| AGAATAAGGCTGAGATTGGT+GGG | 0.498277 | 2.1:-2545041 | MS.gene36245:CDS |
| AGCAATATTAAGCTGGAGAG+AGG | 0.511053 | 2.1:-2544677 | MS.gene36245:CDS |
| AGAATCGGTCACTGTAACAA+AGG | 0.511601 | 2.1:+2544882 | None:intergenic |
| GAGAATAAGGCTGAGATTGG+TGG | 0.515002 | 2.1:-2545042 | MS.gene36245:CDS |
| TCTGTTGTCATGAAAGTGAA+TGG | 0.517166 | 2.1:-2544727 | MS.gene36245:CDS |
| CGCAAGAAGGTAGTGTGAGA+TGG | 0.528527 | 2.1:+2547134 | None:intergenic |
| GGTAGTGTGAGATGGAAGAG+TGG | 0.538205 | 2.1:+2547142 | None:intergenic |
| AGTGCAAGCTGGGGTTTGAA+CGG | 0.544456 | 2.1:-2545150 | MS.gene36245:CDS |
| TGCTGAAGCAACTGCAGAAG+TGG | 0.550397 | 2.1:-2544782 | MS.gene36245:CDS |
| AAATGAAAAGGGTGTTATGG+GGG | 0.550474 | 2.1:-2544977 | MS.gene36245:CDS |
| AAAGGCAAGCAATATTAAGC+TGG | 0.550856 | 2.1:-2544684 | MS.gene36245:CDS |
| GGCAGTCTGCAGCCATTATG+GGG | 0.556364 | 2.1:+2544592 | None:intergenic |
| CCTTGAAAGATATGAAATCA+GGG | 0.577321 | 2.1:-2544825 | MS.gene36245:CDS |
| CGAGAAGAGATCCATGGACA+TGG | 0.587730 | 2.1:+2547177 | None:intergenic |
| GAAGCAACTGCAGAAGTGGT+TGG | 0.594231 | 2.1:-2544778 | MS.gene36245:CDS |
| GCAATATTAAGCTGGAGAGA+GGG | 0.596295 | 2.1:-2544676 | MS.gene36245:CDS |
| AATGAAAAGGGTGTTATGGG+GGG | 0.597424 | 2.1:-2544976 | MS.gene36245:CDS |
| TAGAACATTACCGCGCAAGA+AGG | 0.598833 | 2.1:+2547121 | None:intergenic |
| AGGAAGATGGACTTTGTGAG+AGG | 0.603497 | 2.1:-2545012 | MS.gene36245:CDS |
| AAAATGAAAAGGGTGTTATG+GGG | 0.604711 | 2.1:-2544978 | MS.gene36245:CDS |
| CAAGCTGGGGTTTGAACGGG+AGG | 0.606597 | 2.1:-2545146 | MS.gene36245:CDS |
| ATGCAGCGAGAAGAGATCCA+TGG | 0.607270 | 2.1:+2547171 | None:intergenic |
| GACGAAGATCTAGAAGTTTG+GGG | 0.621557 | 2.1:-2544756 | MS.gene36245:CDS |
| TCTCACACTACCTTCTTGCG+CGG | 0.664409 | 2.1:-2547131 | MS.gene36245:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAAACAATTATTT+AGG | - | chr2.1:2545764-2545783 | MS.gene36245:intron | 10.0% |
| !! | ATAAATTAACATGTATATAA+CGG | + | chr2.1:2545418-2545437 | None:intergenic | 10.0% |
| !! | ACTATTAAGAAAGATTTATA+TGG | - | chr2.1:2545086-2545105 | MS.gene36245:CDS | 15.0% |
| !!! | AATTGTTTTAGATATTTGTT+TGG | - | chr2.1:2545675-2545694 | MS.gene36245:intron | 15.0% |
| !!! | ATCTTTCTTAATAGTTTTTT+AGG | + | chr2.1:2545081-2545100 | None:intergenic | 15.0% |
| !!! | ATTGTTTTAGATATTTGTTT+GGG | - | chr2.1:2545676-2545695 | MS.gene36245:intron | 15.0% |
| !! | AAATATGACCAACATATTTA+AGG | + | chr2.1:2546399-2546418 | None:intergenic | 20.0% |
| !! | AACATACACAAAATGATTTA+TGG | + | chr2.1:2546230-2546249 | None:intergenic | 20.0% |
| !! | AATGAATTCTAACTTGATTT+GGG | - | chr2.1:2546347-2546366 | MS.gene36245:intron | 20.0% |
| !! | ATATCATATAGGATCTTAAA+TGG | - | chr2.1:2545252-2545271 | MS.gene36245:intron | 20.0% |
| !! | ATATGTAACTCTTGTATATA+TGG | - | chr2.1:2545628-2545647 | MS.gene36245:intron | 20.0% |
| !! | TCATCAAATTTGATCTTAAA+TGG | - | chr2.1:2546142-2546161 | MS.gene36245:intron | 20.0% |
| !!! | ATTCTATGCTTTTATACTTT+TGG | - | chr2.1:2544801-2544820 | MS.gene36245:CDS | 20.0% |
| !!! | ATTTTTAGCCTTAAATATGT+TGG | - | chr2.1:2546388-2546407 | MS.gene36245:intron | 20.0% |
| !!! | TAAATCATTTTGTGTATGTT+TGG | - | chr2.1:2546230-2546249 | MS.gene36245:intron | 20.0% |
| !!! | TCCTATATTTTTTACATTAG+CGG | + | chr2.1:2545387-2545406 | None:intergenic | 20.0% |
| !!! | TTATCTCAACAATTTTATGA+GGG | - | chr2.1:2545901-2545920 | MS.gene36245:intron | 20.0% |
| !!! | TTTTACATTTCCTTTAGAAT+CGG | + | chr2.1:2546915-2546934 | None:intergenic | 20.0% |
| !!! | TTTTGAAGAACATATCATAT+AGG | - | chr2.1:2545241-2545260 | MS.gene36245:intron | 20.0% |
| ! | AAAGGAAATGTAAAACTTAG+TGG | - | chr2.1:2546920-2546939 | MS.gene36245:intron | 25.0% |
| ! | AAGTGTAGAAGAAAATGAAA+AGG | - | chr2.1:2546790-2546809 | MS.gene36245:intron | 25.0% |
| ! | ACCGCTAATGTAAAAAATAT+AGG | - | chr2.1:2545383-2545402 | MS.gene36245:intron | 25.0% |
| ! | AGTGTAGAAGAAAATGAAAA+GGG | - | chr2.1:2546791-2546810 | MS.gene36245:intron | 25.0% |
| ! | CTAATCCAATGTAATTACAT+GGG | - | chr2.1:2545148-2545167 | MS.gene36245:CDS | 25.0% |
| ! | GAATGAATTCTAACTTGATT+TGG | - | chr2.1:2546346-2546365 | MS.gene36245:intron | 25.0% |
| ! | GTATCTTCAATGTATACAAT+TGG | + | chr2.1:2547157-2547176 | None:intergenic | 25.0% |
| ! | TCAAGAAAATAGAGAAAGTT+TGG | - | chr2.1:2545281-2545300 | MS.gene36245:intron | 25.0% |
| ! | TGAGAAATGTTGATCAATTA+GGG | + | chr2.1:2545604-2545623 | None:intergenic | 25.0% |
| ! | TTGAGAAATGTTGATCAATT+AGG | + | chr2.1:2545605-2545624 | None:intergenic | 25.0% |
| !! | AAAACAATTATTTAGGACAC+CGG | - | chr2.1:2545771-2545790 | MS.gene36245:intron | 25.0% |
| !! | ATGAATTCTAACTTGATTTG+GGG | - | chr2.1:2546348-2546367 | MS.gene36245:intron | 25.0% |
| !! | CATATTTAAGGCTAAAAATC+AGG | + | chr2.1:2546387-2546406 | None:intergenic | 25.0% |
| !! | GTTATCTCAACAATTTTATG+AGG | - | chr2.1:2545900-2545919 | MS.gene36245:intron | 25.0% |
| !! | TATCTCAACAATTTTATGAG+GGG | - | chr2.1:2545902-2545921 | MS.gene36245:intron | 25.0% |
| !! | TTTCCTTTTTGTTGAAAGAT+TGG | - | chr2.1:2545981-2546000 | MS.gene36245:intron | 25.0% |
| !!! | ACTTGTTTTTCTTTACTCAA+CGG | - | chr2.1:2544725-2544744 | MS.gene36245:CDS | 25.0% |
| !!! | TCATTTTTAGCTTTTATGAC+AGG | + | chr2.1:2545556-2545575 | None:intergenic | 25.0% |
| !!! | TGAATGGATTTACTCATTTT+CGG | - | chr2.1:2547068-2547087 | MS.gene36245:intron | 25.0% |
| AAAATTGTTGAGATAACCTG+AGG | + | chr2.1:2545897-2545916 | None:intergenic | 30.0% | |
| AATGTCATCTCAACAATCTT+AGG | - | chr2.1:2546560-2546579 | MS.gene36245:intron | 30.0% | |
| ATCGTGTCTATTTGATTATG+CGG | + | chr2.1:2546514-2546533 | None:intergenic | 30.0% | |
| ATTCAAATACACAAACCAAC+CGG | + | chr2.1:2544767-2544786 | None:intergenic | 30.0% | |
| CAAGTTAGAATTCATTCAAG+AGG | + | chr2.1:2546343-2546362 | None:intergenic | 30.0% | |
| CAATGTAATTACATGGGATA+AGG | - | chr2.1:2545154-2545173 | MS.gene36245:CDS | 30.0% | |
| CCTTGAAAGATATGAAATCA+GGG | - | chr2.1:2546954-2546973 | MS.gene36245:intron | 30.0% | |
| CTTATCCCATGTAATTACAT+TGG | + | chr2.1:2545156-2545175 | None:intergenic | 30.0% | |
| GACAGGAGATGAATAAATAA+AGG | + | chr2.1:2545539-2545558 | None:intergenic | 30.0% | |
| GAGAAATGTTGATCAATTAG+GGG | + | chr2.1:2545603-2545622 | None:intergenic | 30.0% | |
| GCTAATCCAATGTAATTACA+TGG | - | chr2.1:2545147-2545166 | MS.gene36245:CDS | 30.0% | |
| TAACATGTATATAACGGTGT+TGG | + | chr2.1:2545412-2545431 | None:intergenic | 30.0% | |
| TAACTCCCTAATTGAGAATA+AGG | - | chr2.1:2546724-2546743 | MS.gene36245:intron | 30.0% | |
| TCAATTTAACCCTAAAGTGA+AGG | + | chr2.1:2544699-2544718 | None:intergenic | 30.0% | |
| TCAGTTATCTATCACTAACT+GGG | + | chr2.1:2545313-2545332 | None:intergenic | 30.0% | |
| TCCTTGAAAGATATGAAATC+AGG | - | chr2.1:2546953-2546972 | MS.gene36245:intron | 30.0% | |
| TGGTTTATAGTAGCACATTA+TGG | - | chr2.1:2545106-2545125 | MS.gene36245:CDS | 30.0% | |
| TTCAGTTATCTATCACTAAC+TGG | + | chr2.1:2545314-2545333 | None:intergenic | 30.0% | |
| ! | TAGTGATAATGATAGATAGC+AGG | - | chr2.1:2546194-2546213 | MS.gene36245:intron | 30.0% |
| !! | AAAATGAAAAGGGTGTTATG+GGG | - | chr2.1:2546801-2546820 | MS.gene36245:intron | 30.0% |
| !! | AGAAAATGAAAAGGGTGTTA+TGG | - | chr2.1:2546799-2546818 | MS.gene36245:intron | 30.0% |
| !! | ATTACATTGGATTAGCTACA+TGG | + | chr2.1:2545143-2545162 | None:intergenic | 30.0% |
| !! | GAAAATGAAAAGGGTGTTAT+GGG | - | chr2.1:2546800-2546819 | MS.gene36245:intron | 30.0% |
| AAAGGCAAGCAATATTAAGC+TGG | - | chr2.1:2547095-2547114 | MS.gene36245:intron | 35.0% | |
| ACCTCACTCTCATATCATAT+AGG | - | chr2.1:2545202-2545221 | MS.gene36245:intron | 35.0% | |
| ATTGAGAATAAGGCTGAGAT+TGG | - | chr2.1:2546734-2546753 | MS.gene36245:intron | 35.0% | |
| CCCTGATTTCATATCTTTCA+AGG | + | chr2.1:2546957-2546976 | None:intergenic | 35.0% | |
| GAAATAAGCACGAACAAATC+AGG | + | chr2.1:2546050-2546069 | None:intergenic | 35.0% | |
| GACTTGTAGATGTTGTAGTA+AGG | - | chr2.1:2545017-2545036 | MS.gene36245:CDS | 35.0% | |
| GCACCAATCTTTCAACAAAA+AGG | + | chr2.1:2545987-2546006 | None:intergenic | 35.0% | |
| GCAGTTTCAAGAGTTTGAAA+AGG | + | chr2.1:2546587-2546606 | None:intergenic | 35.0% | |
| TAATTACATGGGATAAGGCT+TGG | - | chr2.1:2545159-2545178 | MS.gene36245:CDS | 35.0% | |
| TCCTATATGATATGAGAGTG+AGG | + | chr2.1:2545206-2545225 | None:intergenic | 35.0% | |
| TCTGTTGTCATGAAAGTGAA+TGG | - | chr2.1:2547052-2547071 | MS.gene36245:intron | 35.0% | |
| TTTCAAACTCTTGAAACTGC+AGG | - | chr2.1:2546587-2546606 | MS.gene36245:intron | 35.0% | |
| ! | AGATAGAATGATTTTCCGGT+TGG | - | chr2.1:2544749-2544768 | MS.gene36245:CDS | 35.0% |
| ! | ATGGATTTACTCATTTTCGG+AGG | - | chr2.1:2547071-2547090 | MS.gene36245:intron | 35.0% |
| ! | CGGTAGATAGAATGATTTTC+CGG | - | chr2.1:2544745-2544764 | MS.gene36245:CDS | 35.0% |
| ! | TTACTCATTTTCGGAGGAAA+AGG | - | chr2.1:2547077-2547096 | MS.gene36245:intron | 35.0% |
| !! | AAATGAAAAGGGTGTTATGG+GGG | - | chr2.1:2546802-2546821 | MS.gene36245:intron | 35.0% |
| !! | CTCAGCCTTATTCTCAATTA+GGG | + | chr2.1:2546732-2546751 | None:intergenic | 35.0% |
| !! | TCTCAGCCTTATTCTCAATT+AGG | + | chr2.1:2546733-2546752 | None:intergenic | 35.0% |
| !!! | AGGGGTGTTTTTGATTCTAA+GGG | - | chr2.1:2545920-2545939 | MS.gene36245:intron | 35.0% |
| !!! | ATTCTAAGGGGTCAGTTTTT+TGG | - | chr2.1:2545933-2545952 | MS.gene36245:intron | 35.0% |
| !!! | TTCTAAGGGGTCAGTTTTTT+GGG | - | chr2.1:2545934-2545953 | MS.gene36245:intron | 35.0% |
| AACCAAATCAGGAATGGGAT+TGG | - | chr2.1:2546109-2546128 | MS.gene36245:intron | 40.0% | |
| AACCAATCCCATTCCTGATT+TGG | + | chr2.1:2546114-2546133 | None:intergenic | 40.0% | |
| AACTTGATGCCTATGAAGCA+CGG | + | chr2.1:2545864-2545883 | None:intergenic | 40.0% | |
| AATCAGGGCAAAAGCTTTCT+AGG | - | chr2.1:2546969-2546988 | MS.gene36245:intron | 40.0% | |
| ACAGACAACCAAATCAGGAA+TGG | - | chr2.1:2546103-2546122 | MS.gene36245:intron | 40.0% | |
| AGAATAAGGCTGAGATTGGT+GGG | - | chr2.1:2546738-2546757 | MS.gene36245:intron | 40.0% | |
| AGAATCGGTCACTGTAACAA+AGG | + | chr2.1:2546900-2546919 | None:intergenic | 40.0% | |
| AGCAATATTAAGCTGGAGAG+AGG | - | chr2.1:2547102-2547121 | MS.gene36245:intron | 40.0% | |
| AGCACCTATAGTAGGAAAGA+CGG | - | chr2.1:2544955-2544974 | MS.gene36245:CDS | 40.0% | |
| ATTGTTGAGATAACCTGAGG+TGG | + | chr2.1:2545894-2545913 | None:intergenic | 40.0% | |
| CAGACAACCAAATCAGGAAT+GGG | - | chr2.1:2546104-2546123 | MS.gene36245:intron | 40.0% | |
| CTTTCGATGCCTTCACTTTA+GGG | - | chr2.1:2544687-2544706 | MS.gene36245:CDS | 40.0% | |
| GAAACTGCAGGATATGTTAG+AGG | - | chr2.1:2546599-2546618 | MS.gene36245:intron | 40.0% | |
| GACGAAGATCTAGAAGTTTG+GGG | - | chr2.1:2547023-2547042 | MS.gene36245:intron | 40.0% | |
| GCAATATTAAGCTGGAGAGA+GGG | - | chr2.1:2547103-2547122 | MS.gene36245:intron | 40.0% | |
| GGACGAAGATCTAGAAGTTT+GGG | - | chr2.1:2547022-2547041 | MS.gene36245:intron | 40.0% | |
| GTGTCTATTTGATTATGCGG+TGG | + | chr2.1:2546511-2546530 | None:intergenic | 40.0% | |
| GTTGAAGTAGCACCTATAGT+AGG | - | chr2.1:2544947-2544966 | MS.gene36245:CDS | 40.0% | |
| TAGGAAAGACGGTGGAAAAT+AGG | - | chr2.1:2544966-2544985 | MS.gene36245:CDS | 40.0% | |
| TATGAGTGTTACACAGGTGT+CGG | - | chr2.1:2545716-2545735 | MS.gene36245:intron | 40.0% | |
| TCTTTCGATGCCTTCACTTT+AGG | - | chr2.1:2544686-2544705 | MS.gene36245:CDS | 40.0% | |
| TGGACGAAGATCTAGAAGTT+TGG | - | chr2.1:2547021-2547040 | MS.gene36245:intron | 40.0% | |
| TGTGTGTCTACGAGTAGAAT+TGG | - | chr2.1:2546312-2546331 | MS.gene36245:intron | 40.0% | |
| TTGAAAGATTGGTGCAGTAG+TGG | - | chr2.1:2545992-2546011 | MS.gene36245:intron | 40.0% | |
| ! | GTTACAGTGACCGATTCTAA+AGG | - | chr2.1:2546902-2546921 | MS.gene36245:intron | 40.0% |
| ! | TCCAAATTTTACGCGGGATA+GGG | - | chr2.1:2546694-2546713 | MS.gene36245:intron | 40.0% |
| !! | AATGAAAAGGGTGTTATGGG+GGG | - | chr2.1:2546803-2546822 | MS.gene36245:intron | 40.0% |
| !! | AGGATTTTCTAGTGCAAGCT+GGG | - | chr2.1:2546619-2546638 | MS.gene36245:intron | 40.0% |
| !! | CAAGTTTTAGTATCCACCTC+AGG | - | chr2.1:2545878-2545897 | MS.gene36245:intron | 40.0% |
| !! | GATGAAGTATCGTCAGACAA+AGG | - | chr2.1:2545051-2545070 | MS.gene36245:CDS | 40.0% |
| !! | GGGGTGTTTTTGATTCTAAG+GGG | - | chr2.1:2545921-2545940 | MS.gene36245:intron | 40.0% |
| !!! | GAGGGGTGTTTTTGATTCTA+AGG | - | chr2.1:2545919-2545938 | MS.gene36245:intron | 40.0% |
| ACCTATAGTAGGAAAGACGG+TGG | - | chr2.1:2544958-2544977 | MS.gene36245:CDS | 45.0% | |
| AGATCCATGGACATGGCAAA+TGG | + | chr2.1:2544598-2544617 | None:intergenic | 45.0% | |
| AGCTCACAGACAACCAAATC+AGG | - | chr2.1:2546098-2546117 | MS.gene36245:intron | 45.0% | |
| ATGAAGCATGGACTCTGACA+CGG | - | chr2.1:2545350-2545369 | MS.gene36245:intron | 45.0% | |
| CTGAGATTGGTGGGAATTTC+AGG | - | chr2.1:2546747-2546766 | MS.gene36245:intron | 45.0% | |
| CTGCATCAAGCTATGAAGCA+TGG | - | chr2.1:2545338-2545357 | MS.gene36245:intron | 45.0% | |
| GAGAATAAGGCTGAGATTGG+TGG | - | chr2.1:2546737-2546756 | MS.gene36245:intron | 45.0% | |
| TACTTCGACACTCCTACGAT+CGG | + | chr2.1:2545745-2545764 | None:intergenic | 45.0% | |
| TAGAACATTACCGCGCAAGA+AGG | + | chr2.1:2544661-2544680 | None:intergenic | 45.0% | |
| TCCACCGTCTTTCCTACTAT+AGG | + | chr2.1:2544962-2544981 | None:intergenic | 45.0% | |
| TCCCTATCCCGCGTAAAATT+TGG | + | chr2.1:2546698-2546717 | None:intergenic | 45.0% | |
| TCTTCCATTTGCCATGTCCA+TGG | - | chr2.1:2544591-2544610 | MS.gene36245:CDS | 45.0% | |
| TGGTGGGAATTTCAGGAAGA+TGG | - | chr2.1:2546754-2546773 | MS.gene36245:intron | 45.0% | |
| ! | AAGATTGGTGCAGTAGTGGA+TGG | - | chr2.1:2545996-2546015 | MS.gene36245:intron | 45.0% |
| ! | AGGAAGATGGACTTTGTGAG+AGG | - | chr2.1:2546767-2546786 | MS.gene36245:intron | 45.0% |
| ! | CGGTGGAAAATAGGCTTTTG+TGG | - | chr2.1:2544975-2544994 | MS.gene36245:CDS | 45.0% |
| ! | GAGGGATTTTCTGATTCTCG+AGG | - | chr2.1:2547121-2547140 | MS.gene36245:intron | 45.0% |
| ! | GTAAAACTTAGTGGCTCTGC+TGG | - | chr2.1:2546929-2546948 | MS.gene36245:intron | 45.0% |
| ! | GTCCAAATTTTACGCGGGAT+AGG | - | chr2.1:2546693-2546712 | MS.gene36245:intron | 45.0% |
| ! | GTGCTCGTCCAAATTTTACG+CGG | - | chr2.1:2546687-2546706 | MS.gene36245:intron | 45.0% |
| ! | TGCTCGTCCAAATTTTACGC+GGG | - | chr2.1:2546688-2546707 | MS.gene36245:intron | 45.0% |
| !! | AGATTGGTGCAGTAGTGGAT+GGG | - | chr2.1:2545997-2546016 | MS.gene36245:intron | 45.0% |
| !! | GAGGATTTTCTAGTGCAAGC+TGG | - | chr2.1:2546618-2546637 | MS.gene36245:intron | 45.0% |
| !! | GGATTTTCTAGTGCAAGCTG+GGG | - | chr2.1:2546620-2546639 | MS.gene36245:intron | 45.0% |
| !! | TTTGTTTGGGTTGTCCGACA+CGG | - | chr2.1:2545689-2545708 | MS.gene36245:intron | 45.0% |
| AACACTCATACGAGCCGTGT+CGG | + | chr2.1:2545706-2545725 | None:intergenic | 50.0% | |
| ACAACTCGTCGTCCCCATAA+TGG | - | chr2.1:2547175-2547194 | MS.gene36245:CDS | 50.0% | |
| AGTGCAAGCTGGGGTTTGAA+CGG | - | chr2.1:2546629-2546648 | MS.gene36245:intron | 50.0% | |
| ATGCAGCGAGAAGAGATCCA+TGG | + | chr2.1:2544611-2544630 | None:intergenic | 50.0% | |
| CGAGAAGAGATCCATGGACA+TGG | + | chr2.1:2544605-2544624 | None:intergenic | 50.0% | |
| CGCAAGAAGGTAGTGTGAGA+TGG | + | chr2.1:2544648-2544667 | None:intergenic | 50.0% | |
| GAAGCAACTGCAGAAGTGGT+TGG | - | chr2.1:2547001-2547020 | MS.gene36245:intron | 50.0% | |
| GGCTCGTATGAGTGTTACAC+AGG | - | chr2.1:2545710-2545729 | MS.gene36245:intron | 50.0% | |
| GGTAGTGTGAGATGGAAGAG+TGG | + | chr2.1:2544640-2544659 | None:intergenic | 50.0% | |
| TAGACGTGTCCGTGCTTCAT+AGG | - | chr2.1:2545852-2545871 | MS.gene36245:intron | 50.0% | |
| TATGAAGCACGGACACGTCT+AGG | + | chr2.1:2545853-2545872 | None:intergenic | 50.0% | |
| TCTCACACTACCTTCTTGCG+CGG | - | chr2.1:2544648-2544667 | MS.gene36245:CDS | 50.0% | |
| TGCTGAAGCAACTGCAGAAG+TGG | - | chr2.1:2546997-2547016 | MS.gene36245:intron | 50.0% | |
| TGGCAGTCTGCAGCCATTAT+GGG | + | chr2.1:2547191-2547210 | None:intergenic | 50.0% | |
| TTGGCAGTCTGCAGCCATTA+TGG | + | chr2.1:2547192-2547211 | None:intergenic | 50.0% | |
| ! | ACTTGTCGTACGGGTGTCAT+AGG | - | chr2.1:2545800-2545819 | MS.gene36245:intron | 50.0% |
| ! | TACGGGTGTCATAGGAGTGT+CGG | - | chr2.1:2545808-2545827 | MS.gene36245:intron | 50.0% |
| CGGTTCGACACTTGTCGTAC+GGG | - | chr2.1:2545791-2545810 | MS.gene36245:intron | 55.0% | |
| GGCAGTCTGCAGCCATTATG+GGG | + | chr2.1:2547190-2547209 | None:intergenic | 55.0% | |
| GTGCAAGCTGGGGTTTGAAC+GGG | - | chr2.1:2546630-2546649 | MS.gene36245:intron | 55.0% | |
| ! | CCGGTTCGACACTTGTCGTA+CGG | - | chr2.1:2545790-2545809 | MS.gene36245:intron | 55.0% |
| !! | CCGTACGACAAGTGTCGAAC+CGG | + | chr2.1:2545793-2545812 | None:intergenic | 55.0% |
| !! | GGTGCAGTAGTGGATGGGAT+TGG | - | chr2.1:2546002-2546021 | MS.gene36245:intron | 55.0% |
| CAAGCTGGGGTTTGAACGGG+AGG | - | chr2.1:2546633-2546652 | MS.gene36245:intron | 60.0% | |
| ! | GCACGGACACGTCTAGGACT+AGG | + | chr2.1:2545847-2545866 | None:intergenic | 60.0% |
| ! | GTCTAGGACTAGGCGTGTCG+CGG | + | chr2.1:2545837-2545856 | None:intergenic | 60.0% |
| !! | AGGTGTCGGACACCGATCGT+AGG | - | chr2.1:2545730-2545749 | MS.gene36245:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 2544573 | 2547228 | 2544573 | ID=MS.gene36245 |
| chr2.1 | mRNA | 2544573 | 2547228 | 2544573 | ID=MS.gene36245.t1;Parent=MS.gene36245 |
| chr2.1 | exon | 2547132 | 2547228 | 2547132 | ID=MS.gene36245.t1.exon1;Parent=MS.gene36245.t1 |
| chr2.1 | CDS | 2547132 | 2547228 | 2547132 | ID=cds.MS.gene36245.t1;Parent=MS.gene36245.t1 |
| chr2.1 | exon | 2544573 | 2545192 | 2544573 | ID=MS.gene36245.t1.exon2;Parent=MS.gene36245.t1 |
| chr2.1 | CDS | 2544573 | 2545192 | 2544573 | ID=cds.MS.gene36245.t1;Parent=MS.gene36245.t1 |
| Gene Sequence |
| Protein sequence |
