AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37131


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37131.t1 MTR_6g016600 96.992 133 4 0 1 133 447 579 2.54e-86 265
MS.gene37131.t1 MTR_5g069780 52.459 122 54 2 1 120 447 566 8.94e-30 114
MS.gene37131.t1 MTR_7g010800 49.206 126 62 1 1 126 339 462 2.07e-29 113
MS.gene37131.t1 MTR_7g096060 41.860 129 75 0 1 129 374 502 4.58e-29 112
MS.gene37131.t1 MTR_3g115110 48.092 131 66 1 1 131 382 510 9.24e-29 111
MS.gene37131.t1 MTR_3g462930 49.180 122 58 2 1 120 438 557 3.07e-28 110
MS.gene37131.t1 MTR_2g101290 43.651 126 69 1 1 126 548 671 3.41e-28 110
MS.gene37131.t1 MTR_2g101290 43.651 126 69 1 1 126 548 671 4.62e-28 109
MS.gene37131.t1 MTR_6g059690 42.063 126 73 0 1 126 331 456 3.82e-27 107
MS.gene37131.t1 MTR_2g438140 45.038 131 69 2 1 131 419 546 1.91e-26 105
MS.gene37131.t1 MTR_2g438140 45.038 131 69 2 1 131 359 486 2.03e-26 105
MS.gene37131.t1 MTR_4g094662 45.038 131 69 2 1 131 362 489 2.74e-26 104
MS.gene37131.t1 MTR_0376s0020 40.164 122 73 0 1 122 134 255 6.27e-26 103
MS.gene37131.t1 MTR_7g078570 41.270 126 74 0 1 126 326 451 4.54e-25 100
MS.gene37131.t1 MTR_3g104470 43.846 130 68 2 1 130 354 478 3.45e-24 98.6
MS.gene37131.t1 MTR_1g028390 42.748 131 73 1 1 131 458 586 4.10e-24 98.2
MS.gene37131.t1 MTR_4g064350 40.476 126 75 0 1 126 454 579 7.51e-24 97.8
MS.gene37131.t1 MTR_5g075340 44.615 130 67 3 1 130 359 483 3.29e-23 95.9
MS.gene37131.t1 MTR_3g104480 43.077 130 69 2 1 130 352 476 4.33e-23 95.5
MS.gene37131.t1 MTR_1g044600 39.683 126 76 0 1 126 262 387 5.17e-23 95.1
MS.gene37131.t1 MTR_3g096000 39.552 134 78 2 1 131 430 563 2.95e-22 93.2
MS.gene37131.t1 MTR_7g089040 47.312 93 47 1 1 93 818 908 3.22e-21 90.1
MS.gene37131.t1 MTR_7g089040 43.434 99 55 1 1 99 515 612 1.50e-13 68.2
MS.gene37131.t1 MTR_1g063380 44.762 105 56 1 1 105 336 438 1.00e-20 88.6
MS.gene37131.t1 MTR_1g063380 37.719 114 61 2 1 114 612 715 2.26e-17 79.0
MS.gene37131.t1 MTR_3g117230 39.286 112 66 1 1 112 273 382 2.05e-20 87.0
MS.gene37131.t1 MTR_7g101870 43.810 105 57 1 1 105 337 439 2.40e-20 87.4
MS.gene37131.t1 MTR_7g101870 36.842 114 62 2 1 114 613 716 6.03e-17 77.8
MS.gene37131.t1 MTR_2g007010 51.087 92 43 1 5 96 376 465 3.82e-20 87.0
MS.gene37131.t1 MTR_2g007010 38.710 93 57 0 1 93 659 751 1.36e-12 65.1
MS.gene37131.t1 MTR_8g056860 41.748 103 58 1 10 112 616 716 4.45e-20 86.7
MS.gene37131.t1 MTR_1g083330 43.636 110 60 1 1 110 301 408 5.36e-20 86.3
MS.gene37131.t1 MTR_4g033235 43.636 110 60 1 1 110 302 409 5.88e-20 85.9
MS.gene37131.t1 MTR_3g112260 38.393 112 67 1 1 112 270 379 8.19e-20 85.5
MS.gene37131.t1 MTR_1g095660 39.286 112 66 1 1 112 258 367 9.28e-20 85.1
MS.gene37131.t1 MTR_8g023550 39.286 112 66 1 1 112 284 393 9.92e-20 85.1
MS.gene37131.t1 MTR_2g095320 42.857 105 58 1 1 105 280 382 1.31e-19 85.5
MS.gene37131.t1 MTR_5g075360 42.308 130 73 2 1 130 196 323 1.37e-19 85.1
MS.gene37131.t1 MTR_5g075360 42.308 130 73 2 1 130 372 499 1.45e-19 85.1
MS.gene37131.t1 MTR_5g075360 42.308 130 73 2 1 130 146 273 1.78e-19 84.7
MS.gene37131.t1 MTR_5g075360 42.308 130 73 2 1 130 322 449 2.06e-19 84.7
MS.gene37131.t1 MTR_8g099605 36.029 136 77 3 1 135 545 671 2.40e-19 84.7
MS.gene37131.t1 MTR_8g099605 36.029 136 77 3 1 135 304 430 2.72e-19 84.3
MS.gene37131.t1 MTR_2g078630 44.792 96 52 1 1 96 202 296 1.48e-18 82.4
MS.gene37131.t1 MTR_2g078630 44.792 96 52 1 1 96 730 824 1.88e-18 82.0
MS.gene37131.t1 MTR_5g074850 39.286 112 66 1 1 112 636 745 1.39e-17 79.7
MS.gene37131.t1 MTR_7g099640 40.000 115 67 1 1 115 321 433 2.60e-17 78.6
MS.gene37131.t1 MTR_7g088830 37.931 116 68 2 1 114 791 904 2.70e-17 79.0
MS.gene37131.t1 MTR_7g088830 28.994 169 105 5 1 160 522 684 5.16e-12 63.5
MS.gene37131.t1 MTR_7g088980 46.316 95 49 1 1 95 270 362 3.05e-17 78.2
MS.gene37131.t1 MTR_7g088980 46.316 95 49 1 1 95 446 538 3.19e-17 78.6
MS.gene37131.t1 MTR_1g069105 40.000 115 67 1 1 115 322 434 3.20e-17 78.2
MS.gene37131.t1 MTR_7g088980 46.316 95 49 1 1 95 403 495 3.78e-17 78.2
MS.gene37131.t1 MTR_7g088980 46.316 95 49 1 1 95 352 444 3.81e-17 78.2
MS.gene37131.t1 MTR_7g088980 46.316 95 49 1 1 95 420 512 4.20e-17 78.2
MS.gene37131.t1 MTR_7g088980 46.316 95 49 1 1 95 377 469 4.26e-17 78.2
MS.gene37131.t1 MTR_3g023900 48.276 87 45 0 10 96 382 468 7.41e-17 77.4
MS.gene37131.t1 MTR_7g099640 44.211 95 51 1 1 95 321 413 5.03e-16 74.7
MS.gene37131.t1 MTR_4g094270 34.074 135 75 2 1 129 291 417 6.11e-16 74.7
MS.gene37131.t1 MTR_2g095210 35.965 114 63 2 1 114 540 643 5.93e-15 72.0
MS.gene37131.t1 MTR_3g023890 47.126 87 46 0 10 96 237 323 1.59e-14 70.9
MS.gene37131.t1 MTR_7g088850 44.211 95 51 1 1 95 416 508 4.59e-14 69.3
MS.gene37131.t1 MTR_4g067100 39.048 105 63 1 1 105 516 619 4.63e-12 63.5
MS.gene37131.t1 MTR_4g067100 39.048 105 63 1 1 105 516 619 4.95e-12 63.5
MS.gene37131.t1 MTR_3g092080 40.206 97 52 3 1 95 216 308 1.11e-11 62.4
MS.gene37131.t1 MTR_3g092080 40.206 97 52 3 1 95 216 308 1.18e-11 62.0
MS.gene37131.t1 MTR_3g062510 32.075 106 70 1 1 106 293 396 2.28e-11 61.6
MS.gene37131.t1 MTR_8g099065 40.206 97 52 3 1 95 666 758 8.79e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37131.t1 AT3G02450 76.692 133 31 0 1 133 461 593 1.26e-65 211
MS.gene37131.t1 AT5G58870 51.200 125 57 2 1 123 460 582 1.57e-31 119
MS.gene37131.t1 AT3G47060 50.400 125 58 2 1 123 456 578 8.54e-31 117
MS.gene37131.t1 AT5G15250 42.515 167 90 3 1 164 354 517 1.22e-29 114
MS.gene37131.t1 AT3G16290 41.667 132 75 1 1 132 540 669 4.37e-28 109
MS.gene37131.t1 AT5G53170 45.802 131 69 1 1 131 488 616 4.75e-28 109
MS.gene37131.t1 AT1G50250 47.328 131 67 1 1 131 392 520 7.72e-28 108
MS.gene37131.t1 AT5G42270 45.802 131 69 1 1 131 380 508 4.73e-27 106
MS.gene37131.t1 AT2G29080 41.085 129 76 0 1 129 452 580 5.27e-27 106
MS.gene37131.t1 AT1G07510 41.085 129 76 0 1 129 458 586 8.97e-27 105
MS.gene37131.t1 AT1G06430 45.038 131 69 2 1 131 350 477 3.44e-26 104
MS.gene37131.t1 AT1G06430 45.038 131 69 2 1 131 350 477 3.44e-26 104
MS.gene37131.t1 AT1G06430 45.038 131 69 2 1 131 350 477 3.44e-26 104
MS.gene37131.t1 AT2G30950 44.275 131 70 2 1 131 357 484 4.94e-26 103
MS.gene37131.t1 AT2G30950 44.275 131 70 2 1 131 357 484 4.94e-26 103
MS.gene37131.t1 AT2G30950 44.275 131 70 2 1 131 357 484 4.94e-26 103
MS.gene37131.t1 AT2G30950 44.275 131 70 2 1 131 361 488 5.05e-26 103
MS.gene37131.t1 AT2G26140 45.802 131 69 1 1 131 354 482 1.15e-25 102
MS.gene37131.t1 AT5G15250 40.940 149 63 2 1 126 354 500 5.16e-25 100
MS.gene37131.t1 AT5G64580 38.806 134 79 2 1 131 447 580 1.99e-22 93.6
MS.gene37131.t1 AT4G23940 35.135 148 88 2 1 142 568 713 5.67e-21 89.4
MS.gene37131.t1 AT5G43010 40.179 112 65 1 1 112 270 379 1.05e-20 87.8
MS.gene37131.t1 AT1G45000 40.179 112 65 1 1 112 270 379 1.16e-20 87.8
MS.gene37131.t1 AT3G56690 47.312 93 47 1 1 93 854 944 1.27e-20 88.6
MS.gene37131.t1 AT3G56690 44.792 96 52 1 1 96 512 606 5.28e-17 78.2
MS.gene37131.t1 AT3G09840 43.810 105 57 1 1 105 335 437 3.92e-20 87.0
MS.gene37131.t1 AT3G09840 36.842 114 62 2 1 114 612 715 1.48e-15 73.9
MS.gene37131.t1 AT5G03340 43.810 105 57 1 1 105 335 437 4.00e-20 87.0
MS.gene37131.t1 AT5G03340 37.374 99 60 1 1 99 611 707 9.63e-15 71.6
MS.gene37131.t1 AT3G05530 43.636 110 60 1 1 110 302 409 4.81e-20 86.3
MS.gene37131.t1 AT1G09100 43.636 110 60 1 1 110 301 408 8.01e-20 85.5
MS.gene37131.t1 AT1G53750 39.286 112 66 1 1 112 299 408 1.29e-19 85.1
MS.gene37131.t1 AT3G53230 41.905 105 59 1 1 105 336 438 2.14e-19 84.7
MS.gene37131.t1 AT3G53230 40.404 99 57 1 1 99 612 708 1.34e-16 77.0
MS.gene37131.t1 AT1G79560 37.500 112 68 1 1 112 627 736 3.10e-19 84.3
MS.gene37131.t1 AT1G79560 37.500 112 68 1 1 112 627 736 3.49e-19 84.3
MS.gene37131.t1 AT1G79560 37.500 112 68 1 1 112 627 736 3.64e-19 84.3
MS.gene37131.t1 AT4G29040 41.739 115 65 1 1 115 319 431 1.62e-18 82.0
MS.gene37131.t1 AT2G20140 41.739 115 65 1 1 115 319 431 4.70e-18 80.9
MS.gene37131.t1 AT1G53780 37.069 116 71 1 1 116 471 584 3.20e-17 78.6
MS.gene37131.t1 AT1G53780 37.069 116 71 1 1 116 471 584 3.20e-17 78.6
MS.gene37131.t1 AT1G53780 37.069 116 71 1 1 116 492 605 3.51e-17 78.6
MS.gene37131.t1 AT1G53780 37.069 116 71 1 1 116 470 583 3.66e-17 78.6
MS.gene37131.t1 AT2G03670 45.263 95 50 1 1 95 418 510 1.36e-16 76.6
MS.gene37131.t1 AT2G03670 31.765 170 92 5 6 166 161 315 1.17e-15 73.9
MS.gene37131.t1 AT3G15120 40.625 96 56 1 1 96 852 946 3.81e-16 75.5
MS.gene37131.t1 AT3G15120 40.625 96 56 1 1 96 862 956 3.81e-16 75.5
MS.gene37131.t1 AT2G03670 31.765 170 92 5 6 166 161 315 1.06e-15 73.9
MS.gene37131.t1 AT5G19990 33.333 135 76 2 1 129 235 361 5.52e-15 71.6
MS.gene37131.t1 AT5G20000 34.884 129 82 1 1 129 293 419 6.11e-15 71.6
MS.gene37131.t1 AT5G19990 33.333 135 76 2 1 129 293 419 6.29e-15 71.6
MS.gene37131.t1 AT5G19990 33.333 135 76 2 1 129 293 419 6.29e-15 71.6
MS.gene37131.t1 AT1G05910 39.640 111 66 1 1 111 514 623 1.63e-12 65.1
MS.gene37131.t1 AT3G01610 45.977 87 41 2 10 96 380 460 1.85e-12 64.7
MS.gene37131.t1 AT3G01610 34.545 110 68 3 1 108 656 763 1.43e-11 62.4
MS.gene37131.t1 AT3G01610 45.977 87 41 2 10 96 380 460 2.09e-12 64.7
MS.gene37131.t1 AT3G01610 34.545 110 68 3 1 108 656 763 1.56e-11 62.4
MS.gene37131.t1 AT5G58290 33.019 106 69 1 1 106 286 389 8.81e-12 62.8
MS.gene37131.t1 AT5G08470 39.048 105 59 2 1 105 963 1062 1.03e-11 62.8
MS.gene37131.t1 AT5G08470 39.048 105 59 2 1 105 972 1071 1.08e-11 62.8

Find 48 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTGAAAGAGCAAAATT+TGG 0.224551 6.2:+12037867 MS.gene37131:CDS
CGCTCTATCCACTGAGCTAC+AGG 0.375810 6.2:+12038575 MS.gene37131:CDS
GCATTTGAGAGGAGTTCCTT+TGG 0.379597 6.2:+12036731 MS.gene37131:CDS
TGTGGCAAGGGAAGATATAA+TGG 0.388759 6.2:+12037842 MS.gene37131:CDS
TTTCTCCTTCCTTCTTCGTC+AGG 0.391335 6.2:-12036696 None:intergenic
ATTGACGATGTTTGCAAGAT+CGG 0.426563 6.2:-12036814 None:intergenic
ACTGAGCTACAGGCGCTGTC+TGG 0.459515 6.2:+12038585 MS.gene37131:CDS
AGGGCTGGATCCAAGGCTTC+TGG 0.459623 6.2:-12036630 None:intergenic
CGACCGGGACGACACAGGGC+TGG 0.495070 6.2:-12036645 None:intergenic
TCTCGAGGAAAGTATATGTA+GGG 0.504433 6.2:+12036670 MS.gene37131:CDS
ACGACACAGGGCTGGATCCA+AGG 0.506054 6.2:-12036637 None:intergenic
AAACCTACGACCTTCTGCTT+AGG 0.510716 6.2:+12038545 MS.gene37131:CDS
GAGAGGAGTTCCTTTGGAGG+AGG 0.513124 6.2:+12036737 MS.gene37131:CDS
AAACCTACGACCTTCTGCTT+AGG 0.514295 6.2:+12038521 MS.gene37131:CDS
GAATCAATGATAAGCAACTA+AGG 0.515226 6.2:+12037889 MS.gene37131:CDS
GCGCTGTCTGGTGAAGCTAC+AGG 0.519670 6.2:+12038597 MS.gene37131:CDS
AGAAACGACCGGGACGACAC+AGG 0.521094 6.2:-12036650 None:intergenic
GAAACGACCGGGACGACACA+GGG 0.522419 6.2:-12036649 None:intergenic
GATCCAGCCCTGTGTCGTCC+CGG 0.528518 6.2:+12036642 MS.gene37131:CDS
TACTAACCGACCAGAAGCCT+TGG 0.544542 6.2:+12036620 MS.gene37131:CDS
TTAATTGCCACAGTTACTGA+TGG 0.552662 6.2:+12036780 MS.gene37131:CDS
TTTGAGAGGAGTTCCTTTGG+AGG 0.552837 6.2:+12036734 MS.gene37131:CDS
TTCTCGAGGAAAGTATATGT+AGG 0.558873 6.2:+12036669 MS.gene37131:CDS
TACTTTCCTCGAGAAACGAC+CGG 0.560952 6.2:-12036661 None:intergenic
ACTTTCCTCGAGAAACGACC+GGG 0.571156 6.2:-12036660 None:intergenic
ATATTAGCTGTGCATTTGAG+AGG 0.572900 6.2:+12036720 MS.gene37131:CDS
AGTAAAATAAGCAAGGAGCT+TGG 0.574154 6.2:+12037915 MS.gene37131:CDS
TTTCCTAAGCAGAAGGTCGT+AGG 0.587678 6.2:-12038548 None:intergenic
GTAGGGGAACCTGACGAAGA+AGG 0.589232 6.2:+12036687 MS.gene37131:CDS
TTTCCTAAGCAGAAGGTCGT+AGG 0.592181 6.2:-12038524 None:intergenic
AGGTAGTGAAACTGTGGCAA+GGG 0.592368 6.2:+12037830 MS.gene37131:intron
AAGGTCTAGTAAAATAAGCA+AGG 0.598431 6.2:+12037908 MS.gene37131:CDS
GTCGTCCCGGTCGTTTCTCG+AGG 0.603735 6.2:+12036655 MS.gene37131:CDS
GGGAACCTGACGAAGAAGGA+AGG 0.608258 6.2:+12036691 MS.gene37131:CDS
ATGTTAGCATCCTCCTCCAA+AGG 0.613955 6.2:-12036747 None:intergenic
CAGGTAGTGAAACTGTGGCA+AGG 0.614725 6.2:+12037829 MS.gene37131:intron
GCGTCTGTTTCCTAAGCAGA+AGG 0.615393 6.2:-12038555 None:intergenic
GCTTTGCTCGCTGCTCGAAG+AGG 0.615478 6.2:+12036843 MS.gene37131:CDS
ACAGTTACTGATGGTCTCGT+AGG 0.621604 6.2:+12036789 MS.gene37131:CDS
TTACATCAATGACTAATCAG+TGG 0.629555 6.2:-12038626 None:intergenic
CTCGAGGAAAGTATATGTAG+GGG 0.655243 6.2:+12036671 MS.gene37131:CDS
CTGGATCCAAGGCTTCTGGT+CGG 0.665200 6.2:-12036626 None:intergenic
AGACAGCGCCTGTAGCTCAG+TGG 0.665739 6.2:-12038583 None:intergenic
CTCTGCAGGTAGTGAAACTG+TGG 0.666734 6.2:+12037824 MS.gene37131:intron
TACGAGACCATCAGTAACTG+TGG 0.680129 6.2:-12036787 None:intergenic
ATTTGAATCAGAAATGAGAG+TGG 0.693418 6.2:+12036584 MS.gene37131:CDS
TAGTTGCTGACAGAAATGGA+TGG 0.707484 6.2:+12036561 None:intergenic
TCTTCGAGCAGCGAGCAAAG+CGG 0.723854 6.2:-12036841 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATCAATTTCTATAAAA+GGG - chr6.2:12037590-12037609 None:intergenic 10.0%
!!! AAAAAACTAATTCATTTTAT+AGG - chr6.2:12038210-12038229 None:intergenic 10.0%
!! AAAAATATCATTTAATGTGA+AGG - chr6.2:12037746-12037765 None:intergenic 15.0%
!! ATTCAATAATAATAACCTAA+TGG - chr6.2:12038011-12038030 None:intergenic 15.0%
!! CACTTAATTCTATATAAATT+AGG + chr6.2:12036986-12037005 MS.gene37131:intron 15.0%
!! GTATAATCAATTTCTATAAA+AGG - chr6.2:12037591-12037610 None:intergenic 15.0%
!! TTATTATTGAATTCATGAAT+TGG + chr6.2:12038019-12038038 MS.gene37131:intron 15.0%
!!! ATTCTATATAAATTAGGTTT+TGG + chr6.2:12036992-12037011 MS.gene37131:intron 15.0%
!!! GAATTAGTTTTTTTTGATTT+TGG + chr6.2:12038217-12038236 MS.gene37131:intron 15.0%
!! AATTAAGTGTCACAAATATA+CGG - chr6.2:12036975-12036994 None:intergenic 20.0%
!! TTATCACTTCAATATTTGAA+AGG + chr6.2:12038269-12038288 MS.gene37131:intron 20.0%
!!! AAATATGCGAATTTCAATTT+TGG - chr6.2:12038381-12038400 None:intergenic 20.0%
!!! ACTTTATCTTTTGTTATAAG+AGG + chr6.2:12037394-12037413 MS.gene37131:intron 20.0%
!!! CTTTATCTTTTGTTATAAGA+GGG + chr6.2:12037395-12037414 MS.gene37131:intron 20.0%
!!! TTTATCTTTTGTTATAAGAG+GGG + chr6.2:12037396-12037415 MS.gene37131:intron 20.0%
! AATAAGTGTGAACAATGAAA+AGG - chr6.2:12038077-12038096 None:intergenic 25.0%
! ACAAATATCACTAAATGGAA+GGG - chr6.2:12038307-12038326 None:intergenic 25.0%
! ATTGTACAAGTAAATTTGAC+AGG - chr6.2:12038049-12038068 None:intergenic 25.0%
! CAATAATAATAACCTAATGG+TGG - chr6.2:12038008-12038027 None:intergenic 25.0%
!! AACAAAACTTTTTGCATACA+AGG - chr6.2:12038101-12038120 None:intergenic 25.0%
!! TAAAATCAAAGAGTGTATGA+AGG + chr6.2:12037075-12037094 MS.gene37131:intron 25.0%
!! TCTGAAGTAGTTATATCTAA+GGG + chr6.2:12037208-12037227 MS.gene37131:intron 25.0%
!!! AAAAGCATTTATGCTATAAG+TGG + chr6.2:12037626-12037645 MS.gene37131:intron 25.0%
AAGGTCTAGTAAAATAAGCA+AGG + chr6.2:12037908-12037927 MS.gene37131:CDS 30.0%
ATTCGCATATTTGTCAATAG+AGG + chr6.2:12038389-12038408 MS.gene37131:intron 30.0%
ATTTGAATCAGAAATGAGAG+TGG + chr6.2:12036584-12036603 MS.gene37131:CDS 30.0%
CATTCACCAATGATAATTCT+TGG + chr6.2:12036911-12036930 MS.gene37131:intron 30.0%
GAATCAATGATAAGCAACTA+AGG + chr6.2:12037889-12037908 MS.gene37131:CDS 30.0%
GACAAATATCACTAAATGGA+AGG - chr6.2:12038308-12038327 None:intergenic 30.0%
GCTATTGAAAGAGCAAAATT+TGG + chr6.2:12037867-12037886 MS.gene37131:CDS 30.0%
GGTTGACAAATATCACTAAA+TGG - chr6.2:12038312-12038331 None:intergenic 30.0%
GTCTAACCAAGAATTATCAT+TGG - chr6.2:12036920-12036939 None:intergenic 30.0%
TCATTTAATGTGAAGGTGAA+AGG - chr6.2:12037739-12037758 None:intergenic 30.0%
!! AGCTGATTTTATATGCTATC+TGG + chr6.2:12037120-12037139 MS.gene37131:intron 30.0%
!! CTCTGAAGTAGTTATATCTA+AGG + chr6.2:12037207-12037226 MS.gene37131:intron 30.0%
!! GCTGATTTTATATGCTATCT+GGG + chr6.2:12037121-12037140 MS.gene37131:intron 30.0%
AGGAAACAAGATGACATACA+AGG + chr6.2:12037981-12038000 MS.gene37131:intron 35.0%
AGTAAAATAAGCAAGGAGCT+TGG + chr6.2:12037915-12037934 MS.gene37131:CDS 35.0%
ATACTCGTTAGACACATAAG+TGG - chr6.2:12038333-12038352 None:intergenic 35.0%
ATATTAGCTGTGCATTTGAG+AGG + chr6.2:12036720-12036739 MS.gene37131:CDS 35.0%
ATTGACGATGTTTGCAAGAT+CGG - chr6.2:12036817-12036836 None:intergenic 35.0%
ATTTCTATAAAAGGGCAACC+CGG - chr6.2:12037582-12037601 None:intergenic 35.0%
TATGCTATCTGGGAAACTTA+TGG + chr6.2:12037131-12037150 MS.gene37131:intron 35.0%
TTAATTGCCACAGTTACTGA+TGG + chr6.2:12036780-12036799 MS.gene37131:CDS 35.0%
! ACGTGTTTGAGTTAACTATG+TGG + chr6.2:12037244-12037263 MS.gene37131:intron 35.0%
! TCTCGAGGAAAGTATATGTA+GGG + chr6.2:12036670-12036689 MS.gene37131:CDS 35.0%
! TTCTCGAGGAAAGTATATGT+AGG + chr6.2:12036669-12036688 MS.gene37131:CDS 35.0%
AACAGCCTCTTGTGTAAAAC+AGG + chr6.2:12037484-12037503 MS.gene37131:intron 40.0%
AATCCATATTTGCACTCTGC+AGG + chr6.2:12037810-12037829 MS.gene37131:intron 40.0%
ACAGCCTCTTGTGTAAAACA+GGG + chr6.2:12037485-12037504 MS.gene37131:intron 40.0%
CATTGATGGGAAGAAGTGAT+AGG + chr6.2:12037961-12037980 MS.gene37131:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr6.2:12037516-12037535 MS.gene37131:intron 40.0%
CTCTTGTGTAAAACAGGGTA+AGG + chr6.2:12037490-12037509 MS.gene37131:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr6.2:12037441-12037460 MS.gene37131:intron 40.0%
TCACTTCTTCCCATCAATGA+TGG - chr6.2:12037960-12037979 None:intergenic 40.0%
TGAAGGTGAAAGGTCAATGA+AGG - chr6.2:12037729-12037748 None:intergenic 40.0%
TGTGGCAAGGGAAGATATAA+TGG + chr6.2:12037842-12037861 MS.gene37131:CDS 40.0%
TGTTATAAGAGGGGTAACCT+TGG + chr6.2:12037405-12037424 MS.gene37131:intron 40.0%
! CTCGAGGAAAGTATATGTAG+GGG + chr6.2:12036671-12036690 MS.gene37131:CDS 40.0%
! CTTACCCTGTTTTACACAAG+AGG - chr6.2:12037492-12037511 None:intergenic 40.0%
AAACCTACGACCTTCTGCTT+AGG + chr6.2:12038521-12038540 MS.gene37131:CDS 45.0%
AAGCAGTTGTGAGGCTACTT+TGG + chr6.2:12037270-12037289 MS.gene37131:intron 45.0%
ACAGTTACTGATGGTCTCGT+AGG + chr6.2:12036789-12036808 MS.gene37131:CDS 45.0%
ACTAAAGCTCCCGCATATGT+AGG - chr6.2:12037556-12037575 None:intergenic 45.0%
AGGTAGTGAAACTGTGGCAA+GGG + chr6.2:12037830-12037849 MS.gene37131:intron 45.0%
ATGTTAGCATCCTCCTCCAA+AGG - chr6.2:12036750-12036769 None:intergenic 45.0%
CCATCAATGATGGCATCCAA+GGG - chr6.2:12037950-12037969 None:intergenic 45.0%
CCTTGGATGCCATCATTGAT+GGG + chr6.2:12037948-12037967 MS.gene37131:intron 45.0%
CTAAAGCTCCCGCATATGTA+GGG - chr6.2:12037555-12037574 None:intergenic 45.0%
CTACCTGCAGAGTGCAAATA+TGG - chr6.2:12037816-12037835 None:intergenic 45.0%
GAAAGGTCAATGAAGGCAGA+GGG - chr6.2:12037722-12037741 None:intergenic 45.0%
GACATACAAGGACCACCATT+AGG + chr6.2:12037993-12038012 MS.gene37131:intron 45.0%
GCATTTGAGAGGAGTTCCTT+TGG + chr6.2:12036731-12036750 MS.gene37131:CDS 45.0%
GCGTACAATACACCAAATGG+TGG + chr6.2:12037515-12037534 MS.gene37131:intron 45.0%
GCTGCGTACAATACACCAAA+TGG + chr6.2:12037512-12037531 MS.gene37131:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr6.2:12037447-12037466 MS.gene37131:intron 45.0%
TAAACATCTTCATACGCGCC+AGG + chr6.2:12038490-12038509 MS.gene37131:intron 45.0%
TACGAGACCATCAGTAACTG+TGG - chr6.2:12036790-12036809 None:intergenic 45.0%
TACTTTCCTCGAGAAACGAC+CGG - chr6.2:12036664-12036683 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr6.2:12037448-12037467 MS.gene37131:intron 45.0%
TGAAAGGTCAATGAAGGCAG+AGG - chr6.2:12037723-12037742 None:intergenic 45.0%
TTTCCTAAGCAGAAGGTCGT+AGG - chr6.2:12038527-12038546 None:intergenic 45.0%
TTTCTCCTTCCTTCTTCGTC+AGG - chr6.2:12036699-12036718 None:intergenic 45.0%
TTTGAGAGGAGTTCCTTTGG+AGG + chr6.2:12036734-12036753 MS.gene37131:CDS 45.0%
! CGTAGGTTTTCCTAAGCAGA+AGG - chr6.2:12038534-12038553 None:intergenic 45.0%
! TGGTCAGCTAAGAGTGTATG+TGG - chr6.2:12037669-12037688 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr6.2:12037481-12037500 None:intergenic 45.0%
ACTTTCCTCGAGAAACGACC+GGG - chr6.2:12036663-12036682 None:intergenic 50.0%
AGCTTGGTAAGCTGTTCCCT+TGG + chr6.2:12037931-12037950 MS.gene37131:intron 50.0%
ATCTTCATACGCGCCAGGTA+GGG + chr6.2:12038495-12038514 MS.gene37131:intron 50.0%
ATGTGGCACAAGCAGTTGTG+AGG + chr6.2:12037261-12037280 MS.gene37131:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr6.2:12037425-12037444 None:intergenic 50.0%
CAGGTAGTGAAACTGTGGCA+AGG + chr6.2:12037829-12037848 MS.gene37131:intron 50.0%
CCCATCAATGATGGCATCCA+AGG - chr6.2:12037951-12037970 None:intergenic 50.0%
CCCTTGGATGCCATCATTGA+TGG + chr6.2:12037947-12037966 MS.gene37131:intron 50.0%
CTCTGCAGGTAGTGAAACTG+TGG + chr6.2:12037824-12037843 MS.gene37131:intron 50.0%
GCGTCTGTTTCCTAAGCAGA+AGG - chr6.2:12038558-12038577 None:intergenic 50.0%
TACTAACCGACCAGAAGCCT+TGG + chr6.2:12036620-12036639 MS.gene37131:CDS 50.0%
!! AAGCAGAAGGGGTGTCTGTA+GGG - chr6.2:12037699-12037718 None:intergenic 50.0%
AAGGCAGAGGGAAGCAGAAG+GGG - chr6.2:12037710-12037729 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr6.2:12037460-12037479 MS.gene37131:intron 55.0%
CATATGTAGGGTCCGGGAAG+GGG - chr6.2:12037543-12037562 None:intergenic 55.0%
CATCTTCATACGCGCCAGGT+AGG + chr6.2:12038494-12038513 MS.gene37131:intron 55.0%
CGCTCTATCCACTGAGCTAC+AGG + chr6.2:12038575-12038594 MS.gene37131:CDS 55.0%
CTGGATCCAAGGCTTCTGGT+CGG - chr6.2:12036629-12036648 None:intergenic 55.0%
CTTCCCGGACCCTACATATG+CGG + chr6.2:12037543-12037562 MS.gene37131:intron 55.0%
GAAGGCAGAGGGAAGCAGAA+GGG - chr6.2:12037711-12037730 None:intergenic 55.0%
GCATATGTAGGGTCCGGGAA+GGG - chr6.2:12037544-12037563 None:intergenic 55.0%
GGGAACCTGACGAAGAAGGA+AGG + chr6.2:12036691-12036710 MS.gene37131:CDS 55.0%
GGTGTCTGTAGGGAGGCTAA+TGG - chr6.2:12037689-12037708 None:intergenic 55.0%
GTAGGGGAACCTGACGAAGA+AGG + chr6.2:12036687-12036706 MS.gene37131:CDS 55.0%
TCGTAGGTTTGACCCCTACC+TGG - chr6.2:12038511-12038530 None:intergenic 55.0%
TCTTCATACGCGCCAGGTAG+GGG + chr6.2:12038496-12038515 MS.gene37131:intron 55.0%
TCTTCGAGCAGCGAGCAAAG+CGG - chr6.2:12036844-12036863 None:intergenic 55.0%
TGAAGGCAGAGGGAAGCAGA+AGG - chr6.2:12037712-12037731 None:intergenic 55.0%
TTCCCGGACCCTACATATGC+GGG + chr6.2:12037544-12037563 MS.gene37131:intron 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr6.2:12037560-12037579 MS.gene37131:intron 55.0%
! GAGAGGAGTTCCTTTGGAGG+AGG + chr6.2:12036737-12036756 MS.gene37131:CDS 55.0%
!! GAAGCAGAAGGGGTGTCTGT+AGG - chr6.2:12037700-12037719 None:intergenic 55.0%
ACGACACAGGGCTGGATCCA+AGG - chr6.2:12036640-12036659 None:intergenic 60.0%
AGAAACGACCGGGACGACAC+AGG - chr6.2:12036653-12036672 None:intergenic 60.0%
AGACAGCGCCTGTAGCTCAG+TGG - chr6.2:12038586-12038605 None:intergenic 60.0%
AGGGCTGGATCCAAGGCTTC+TGG - chr6.2:12036633-12036652 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr6.2:12037414-12037433 MS.gene37131:intron 60.0%
CGCATATGTAGGGTCCGGGA+AGG - chr6.2:12037545-12037564 None:intergenic 60.0%
CTCCCGCATATGTAGGGTCC+GGG - chr6.2:12037549-12037568 None:intergenic 60.0%
GAAACGACCGGGACGACACA+GGG - chr6.2:12036652-12036671 None:intergenic 60.0%
GCGCTGTCTGGTGAAGCTAC+AGG + chr6.2:12038597-12038616 MS.gene37131:CDS 60.0%
GCTCCCGCATATGTAGGGTC+CGG - chr6.2:12037550-12037569 None:intergenic 60.0%
GCTTTGCTCGCTGCTCGAAG+AGG + chr6.2:12036843-12036862 MS.gene37131:CDS 60.0%
! ACTGAGCTACAGGCGCTGTC+TGG + chr6.2:12038585-12038604 MS.gene37131:CDS 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr6.2:12037528-12037547 MS.gene37131:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr6.2:12037561-12037580 MS.gene37131:intron 60.0%
!! CAGAAGGGGTGTCTGTAGGG+AGG - chr6.2:12037696-12037715 None:intergenic 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr6.2:12037530-12037549 None:intergenic 65.0%
GATCCAGCCCTGTGTCGTCC+CGG + chr6.2:12036642-12036661 MS.gene37131:CDS 65.0%
GTCGTCCCGGTCGTTTCTCG+AGG + chr6.2:12036655-12036674 MS.gene37131:CDS 65.0%
CGACCGGGACGACACAGGGC+TGG - chr6.2:12036648-12036667 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 12036576 12038636 12036576 ID=MS.gene37131
chr6.2 mRNA 12036576 12038636 12036576 ID=MS.gene37131.t1;Parent=MS.gene37131
chr6.2 exon 12036576 12036864 12036576 ID=MS.gene37131.t1.exon1;Parent=MS.gene37131.t1
chr6.2 CDS 12036576 12036864 12036576 ID=cds.MS.gene37131.t1;Parent=MS.gene37131.t1
chr6.2 exon 12037832 12037936 12037832 ID=MS.gene37131.t1.exon2;Parent=MS.gene37131.t1
chr6.2 CDS 12037832 12037936 12037832 ID=cds.MS.gene37131.t1;Parent=MS.gene37131.t1
chr6.2 exon 12038512 12038636 12038512 ID=MS.gene37131.t1.exon3;Parent=MS.gene37131.t1
chr6.2 CDS 12038512 12038636 12038512 ID=cds.MS.gene37131.t1;Parent=MS.gene37131.t1
Gene Sequence

>MS.gene37131

ATGGATGGATTTGAATCAGAAATGAGAGTGGTTGTCATTGCAGCTACTAACCGACCAGAAGCCTTGGATCCAGCCCTGTGTCGTCCCGGTCGTTTCTCGAGGAAAGTATATGTAGGGGAACCTGACGAAGAAGGAAGGAGAAAGATATTAGCTGTGCATTTGAGAGGAGTTCCTTTGGAGGAGGATGCTAACATCATATGTCATTTAATTGCCACAGTTACTGATGGTCTCGTAGGTGCCGATCTTGCAAACATCGTCAATGAATCCGCTTTGCTCGCTGCTCGAAGAGGTATAAGAATAACTTAACAATTTTTATAGTTACTATAGCATTTTTGCATTCACCAATGATAATTCTTGGTTAGACTGTATATGTAACATGTACTGAATATCATTTGACCGTATATTTGTGACACTTAATTCTATATAAATTAGGTTTTGGAGCGTTTGAATAAACATAATTATATGCTTACATGATAAGCATTTACATATAAGTTGTTTCTAAAATCAAAGAGTGTATGAAGGTAAACGCTATATAAGCTCTCTGAGCTGATTTTATATGCTATCTGGGAAACTTATGGAAGTAAGTTGAAAACAACTTTATGAATATGTAGTAAGCTTACTTTTATAAGCTCTCTGAAGTAGTTATATCTAAGGGTCTGTTTGAATTGACGTGTTTGAGTTAACTATGTGGCACAAGCAGTTGTGAGGCTACTTTGGAGCGTGCTTATGAAAAACAACTTATAAGTTATGACATGTCTGTAAGCTCTTCAGAATAACATAAAAACAACTTATAGCTTACATGAAAGCAATTAGACTGTACTTTATCTTTTGTTATAAGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGAAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAACAGGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTACATATGCGGGAGCTTTAGTGCACCGGGTTGCCCTTTTATAGAAATTGATTATACATAAAGCACTTATATAAAAGCATTTATGCTATAAGTGGTAAATTAAATCGTTCTTCCACATACACTCTTAGCTGACCATTAGCCTCCCTACAGACACCCCTTCTGCTTCCCTCTGCCTTCATTGACCTTTCACCTTCACATTAAATGATATTTTTATACATTTAAGTCATTTTTAATTGCACAAACAATATTTCATATGAATCCATATTTGCACTCTGCAGGTAGTGAAACTGTGGCAAGGGAAGATATAATGGAAGCTATTGAAAGAGCAAAATTTGGAATCAATGATAAGCAACTAAGGTCTAGTAAAATAAGCAAGGAGCTTGGTAAGCTGTTCCCTTGGATGCCATCATTGATGGGAAGAAGTGATAGGAAACAAGATGACATACAAGGACCACCATTAGGTTATTATTATTGAATTCATGAATTGGTTTTCCTGTCAAATTTACTTGTACAATTTTTTCCTTTTCATTGTTCACACTTATTTCCTTGTATGCAAAAAGTTTTGTTCACGTTCTATATAATGTGCTCAAGAAAATATTGTCACAGAAAATGAGAAGTCGTTGTATTAATTTACATGTTAAATATGTTATGTACCTATAAAATGAATTAGTTTTTTTTGATTTTGGTCTGTGTAAAATATATATTTTTTCTATTTTTATCACTTCAATATTTGAAAGGATTGTTTTTAGTCCCTTCCATTTAGTGATATTTGTCAACCACTTATGTGTCTAACGAGTATTTGTAAACTTTTTCTTTTACATACACCAAAATTGAAATTCGCATATTTGTCAATAGAGGAATTTACATAGTTATTGCAAAAATCAAAAGTAGTTCACAACAAATTTAACGTTTTCAGTAACAAAATGTACTATAGTTTAAACATCTTCATACGCGCCAGGTAGGGGTCAAACCTACGACCTTCTGCTTAGGAAAACCTACGACCTTCTGCTTAGGAAACAGACGCTCTATCCACTGAGCTACAGGCGCTGTCTGGTGAAGCTACAGGCTCTATCCACTGATTAG

Protein sequence

>MS.gene37131.t1

MDGFESEMRVVVIAATNRPEALDPALCRPGRFSRKVYVGEPDEEGRRKILAVHLRGVPLEEDANIICHLIATVTDGLVGADLANIVNESALLAARRGSETVAREDIMEAIERAKFGINDKQLRSSKISKELGRGQTYDLLLRKTYDLLLRKQTLYPLSYRRCLVKLQALSTD