Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37312.t1 | XP_013454690.1 | 97.9 | 195 | 4 | 0 | 1 | 195 | 1 | 195 | 1.80E-103 | 385.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37312.t1 | Q93Z51 | 74.0 | 196 | 50 | 1 | 1 | 195 | 1 | 196 | 7.8e-79 | 294.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37312.t1 | B7FKR8 | 97.9 | 195 | 4 | 0 | 1 | 195 | 1 | 195 | 1.3e-103 | 385.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene37312 | 0.82001 | 8.59E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene37312 | 0.864682 | 1.02E-64 | -1.69E-46 |
| MS.gene049669 | MS.gene37312 | 0.831558 | 1.56E-55 | -1.69E-46 |
| MS.gene050226 | MS.gene37312 | 0.807934 | 3.97E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene37312 | 0.821035 | 5.00E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene37312 | 0.818095 | 2.34E-52 | -1.69E-46 |
| MS.gene050330 | MS.gene37312 | -0.803436 | 3.49E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene37312 | 0.801454 | 8.94E-49 | -1.69E-46 |
| MS.gene050680 | MS.gene37312 | 0.820774 | 5.74E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene37312 | 0.812169 | 4.85E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene37312 | 0.809407 | 1.92E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene37312 | 0.820214 | 7.72E-53 | -1.69E-46 |
| MS.gene050750 | MS.gene37312 | 0.824706 | 6.98E-54 | -1.69E-46 |
| MS.gene050820 | MS.gene37312 | 0.825951 | 3.54E-54 | -1.69E-46 |
| MS.gene050824 | MS.gene37312 | 0.809886 | 1.52E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene37312 | 0.816569 | 5.17E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene37312 | 0.844461 | 7.45E-59 | -1.69E-46 |
| MS.gene05119 | MS.gene37312 | -0.82807 | 1.10E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene37312 | 0.844565 | 6.99E-59 | -1.69E-46 |
| MS.gene052333 | MS.gene37312 | 0.803656 | 3.14E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene37312 | 0.818678 | 1.73E-52 | -1.69E-46 |
| MS.gene052389 | MS.gene37312 | 0.85153 | 8.36E-61 | -1.69E-46 |
| MS.gene052586 | MS.gene37312 | 0.804113 | 2.52E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene37312 | 0.828973 | 6.67E-55 | -1.69E-46 |
| MS.gene053221 | MS.gene37312 | 0.803784 | 2.95E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene37312 | -0.802149 | 6.43E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene37312 | 0.834639 | 2.67E-56 | -1.69E-46 |
| MS.gene054468 | MS.gene37312 | 0.827936 | 1.19E-54 | -1.69E-46 |
| MS.gene054472 | MS.gene37312 | 0.803232 | 3.85E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene37312 | 0.835425 | 1.69E-56 | -1.69E-46 |
| MS.gene05510 | MS.gene37312 | 0.810763 | 9.81E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene37312 | 0.815766 | 7.81E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene37312 | 0.831331 | 1.77E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene37312 | 0.804742 | 1.87E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene37312 | 0.808748 | 2.66E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene37312 | 0.83375 | 4.46E-56 | -1.69E-46 |
| MS.gene057026 | MS.gene37312 | 0.844249 | 8.50E-59 | -1.69E-46 |
| MS.gene057194 | MS.gene37312 | 0.815814 | 7.62E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene37312 | 0.813817 | 2.11E-51 | -1.69E-46 |
| MS.gene058139 | MS.gene37312 | 0.811831 | 5.75E-51 | -1.69E-46 |
| MS.gene058220 | MS.gene37312 | 0.83374 | 4.48E-56 | -1.69E-46 |
| MS.gene059128 | MS.gene37312 | 0.816796 | 4.60E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene37312 | 0.854292 | 1.36E-61 | -1.69E-46 |
| MS.gene06052 | MS.gene37312 | 0.802192 | 6.30E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene37312 | 0.809124 | 2.21E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene37312 | 0.805507 | 1.29E-49 | -1.69E-46 |
| MS.gene060781 | MS.gene37312 | 0.811898 | 5.56E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene37312 | 0.841593 | 4.32E-58 | -1.69E-46 |
| MS.gene060998 | MS.gene37312 | 0.822212 | 2.67E-53 | -1.69E-46 |
| MS.gene061040 | MS.gene37312 | -0.815492 | 8.99E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene37312 | -0.819187 | 1.32E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37312.t1 | MTR_4g011330 | 97.949 | 195 | 4 | 0 | 1 | 195 | 1 | 195 | 1.81e-142 | 395 |
| MS.gene37312.t1 | MTR_4g011330 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 2.40e-123 | 345 |
| MS.gene37312.t1 | MTR_4g011330 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 7.34e-123 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37312.t1 | AT3G16190 | 73.980 | 196 | 50 | 1 | 1 | 195 | 1 | 196 | 3.48e-105 | 300 |
Find 49 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCCATTCTTGTAATGTT+GGG | 0.229591 | 4.4:+88087087 | None:intergenic |
| AGCGTGGAATTCTCATTGTT+TGG | 0.310184 | 4.4:-88090067 | MS.gene37312:CDS |
| TCCACAGCCTTGATCACATT+TGG | 0.315072 | 4.4:+88090101 | None:intergenic |
| GAGAGTCCTGTACACGTAAA+AGG | 0.348297 | 4.4:-88090140 | MS.gene37312:CDS |
| CACCTTCATTCATTCCTTCA+AGG | 0.371638 | 4.4:-88088733 | MS.gene37312:CDS |
| GCGTGGAATTCTCATTGTTT+GGG | 0.376059 | 4.4:-88090066 | MS.gene37312:intron |
| CCACAGCCTTGATCACATTT+GGG | 0.384227 | 4.4:+88090102 | None:intergenic |
| ACAGTTTGCCGGATACAGTT+TGG | 0.389834 | 4.4:+88088403 | None:intergenic |
| TACATACCCAGATGAATATC+AGG | 0.398780 | 4.4:+88088313 | None:intergenic |
| CTTTGAGAATGACAGAGAAT+TGG | 0.404155 | 4.4:-88090302 | None:intergenic |
| AGCCACACCTGATATTCATC+TGG | 0.404890 | 4.4:-88088320 | MS.gene37312:CDS |
| GCATCAACAAGAACAGTAAC+AGG | 0.405100 | 4.4:+88088352 | None:intergenic |
| TCGCTCCATTCTTGTAATGT+TGG | 0.406786 | 4.4:+88087086 | None:intergenic |
| AATGAGAATTCCACGCTGTC+TGG | 0.407835 | 4.4:+88090073 | None:intergenic |
| TTCAAACTCCAAACTGTATC+CGG | 0.422725 | 4.4:-88088411 | MS.gene37312:CDS |
| CATTCATTCCTTCAAGGAGC+AGG | 0.424913 | 4.4:-88088727 | MS.gene37312:CDS |
| AGAGTTAACAGATCAAGCTT+TGG | 0.430465 | 4.4:+88087061 | None:intergenic |
| TATTGATTCCTGCTCCTTGA+AGG | 0.456787 | 4.4:+88088719 | None:intergenic |
| AAAGTTGGTCCGACCTCAAA+AGG | 0.464343 | 4.4:-88088847 | MS.gene37312:CDS |
| CAGCATCAAAGACAGTTTGC+CGG | 0.480576 | 4.4:+88088392 | None:intergenic |
| GATGGACTCGTTATTAAAGA+AGG | 0.480784 | 4.4:-88088802 | MS.gene37312:CDS |
| ATCAATAGCCTGGTGGTCAC+TGG | 0.490543 | 4.4:-88088703 | MS.gene37312:intron |
| GAAGGTGCAGAATTAGTTGA+TGG | 0.503655 | 4.4:-88088820 | MS.gene37312:CDS |
| CAACCCCAACATTACAAGAA+TGG | 0.519375 | 4.4:-88087091 | MS.gene37312:CDS |
| AGTACGCGAACATGATCCCT+TGG | 0.530096 | 4.4:-88088914 | MS.gene37312:CDS |
| ATGGACTCGTTATTAAAGAA+GGG | 0.531438 | 4.4:-88088801 | MS.gene37312:CDS |
| CTATATGCAGAAGGTAAAGT+TGG | 0.533163 | 4.4:-88088862 | MS.gene37312:CDS |
| GCTCCATTCTTGTAATGTTG+GGG | 0.538993 | 4.4:+88087088 | None:intergenic |
| CTCCTTGAAGGAATGAATGA+AGG | 0.561491 | 4.4:+88088731 | None:intergenic |
| CCCAAATGTGATCAAGGCTG+TGG | 0.567094 | 4.4:-88090102 | MS.gene37312:CDS |
| GTACGCGAACATGATCCCTT+GGG | 0.568429 | 4.4:-88088913 | MS.gene37312:CDS |
| TTAACTCACCAGTGACCACC+AGG | 0.569667 | 4.4:+88088695 | None:intergenic |
| AGGAGCAGGAATCAATAGCC+TGG | 0.574998 | 4.4:-88088713 | MS.gene37312:CDS |
| ATTATAAAGTTGTGAAGACA+AGG | 0.576014 | 4.4:-88088777 | MS.gene37312:CDS |
| TCTTCTTGTAATCGACATGC+AGG | 0.585526 | 4.4:-88090268 | MS.gene37312:intron |
| TGTTGTCCCAAATGTGATCA+AGG | 0.588465 | 4.4:-88090108 | MS.gene37312:CDS |
| TGGACTCGTTATTAAAGAAG+GGG | 0.589654 | 4.4:-88088800 | MS.gene37312:CDS |
| GAGTTCAACATCTCTTCCCA+AGG | 0.590646 | 4.4:+88088897 | None:intergenic |
| GCCACACCTGATATTCATCT+GGG | 0.600597 | 4.4:-88088319 | MS.gene37312:intron |
| CCGACCTCAAAAGGAACTGA+AGG | 0.609631 | 4.4:-88088838 | MS.gene37312:CDS |
| CGTCGGCATCTATATGCAGA+AGG | 0.621989 | 4.4:-88088871 | MS.gene37312:CDS |
| GAGATGTTGAACTCTTTCGT+CGG | 0.629670 | 4.4:-88088888 | MS.gene37312:CDS |
| AGTCCTGTACACGTAAAAGG+AGG | 0.634745 | 4.4:-88090137 | MS.gene37312:CDS |
| AGTTCAACATCTCTTCCCAA+GGG | 0.646248 | 4.4:+88088898 | None:intergenic |
| GTCCTGTACACGTAAAAGGA+GGG | 0.653977 | 4.4:-88090136 | MS.gene37312:CDS |
| GTGGAAATTGCCAGACAGCG+TGG | 0.665745 | 4.4:-88090083 | MS.gene37312:CDS |
| ACCCAGATGAATATCAGGTG+TGG | 0.666328 | 4.4:+88088318 | None:intergenic |
| GACAGAGAATTGGAATCACA+CGG | 0.667479 | 4.4:-88090292 | MS.gene37312:CDS |
| AGCAGGAATCAATAGCCTGG+TGG | 0.750062 | 4.4:-88088710 | MS.gene37312:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTGTAGAAATTA+AGG | - | chr4.4:88087161-88087180 | MS.gene37312:intron | 10.0% |
| !! | AAAGTAGATAGATAGAAAAA+GGG | + | chr4.4:88088284-88088303 | None:intergenic | 20.0% |
| !! | AATACCATTAATGTTGAATT+TGG | + | chr4.4:88087958-88087977 | None:intergenic | 20.0% |
| !! | AATCTCAAAATTTCTAATAC+CGG | + | chr4.4:88089325-88089344 | None:intergenic | 20.0% |
| !! | ATTGAAGGTTATTATAAATC+CGG | - | chr4.4:88089460-88089479 | MS.gene37312:intron | 20.0% |
| !! | CATGGTATTATACTATTAAT+AGG | - | chr4.4:88088160-88088179 | MS.gene37312:intron | 20.0% |
| !! | GTTAAAGCTTATTATAAAGT+CGG | - | chr4.4:88089498-88089517 | MS.gene37312:intron | 20.0% |
| !! | TAAAGTAGATAGATAGAAAA+AGG | + | chr4.4:88088285-88088304 | None:intergenic | 20.0% |
| !! | TAGAAAATGATGTTATTCAT+TGG | + | chr4.4:88089684-88089703 | None:intergenic | 20.0% |
| !! | TATGTACACATCAATATTAA+TGG | - | chr4.4:88087567-88087586 | MS.gene37312:intron | 20.0% |
| !!! | AATAAGCTTTAACTTGATAA+TGG | + | chr4.4:88089491-88089510 | None:intergenic | 20.0% |
| !!! | ATTGATAATAGAATGTAAAG+TGG | - | chr4.4:88087878-88087897 | MS.gene37312:intron | 20.0% |
| !!! | CTTTAAATCCAATTATTTTG+TGG | - | chr4.4:88090104-88090123 | MS.gene37312:CDS | 20.0% |
| !!! | TCTACTTTATTTCATCTAAA+AGG | - | chr4.4:88088296-88088315 | MS.gene37312:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTGT+CGG | - | chr4.4:88087747-88087766 | MS.gene37312:intron | 20.0% |
| !!! | TTGATAATAGAATGTAAAGT+GGG | - | chr4.4:88087879-88087898 | MS.gene37312:intron | 20.0% |
| ! | AAATCCGAAAACAAAGAAAA+AGG | + | chr4.4:88087347-88087366 | None:intergenic | 25.0% |
| ! | AATATTGTTGTAAAGACCAA+AGG | - | chr4.4:88089995-88090014 | MS.gene37312:intron | 25.0% |
| ! | AATTGGATTTAAAGAATTGC+AGG | + | chr4.4:88090098-88090117 | None:intergenic | 25.0% |
| ! | AGTAATCATATGCAAACTAA+TGG | + | chr4.4:88089277-88089296 | None:intergenic | 25.0% |
| ! | ATCAAATTCTTGGACATATT+TGG | + | chr4.4:88089212-88089231 | None:intergenic | 25.0% |
| ! | ATGATGTTATTCATTGGAAA+TGG | + | chr4.4:88089678-88089697 | None:intergenic | 25.0% |
| ! | ATTATAAAGTTGTGAAGACA+AGG | - | chr4.4:88088590-88088609 | MS.gene37312:intron | 25.0% |
| ! | ATTCAAGCACTTATTTGTAA+GGG | - | chr4.4:88088106-88088125 | MS.gene37312:intron | 25.0% |
| ! | ATTGGATTTAAAGAATTGCA+GGG | + | chr4.4:88090097-88090116 | None:intergenic | 25.0% |
| ! | GTGTTAGACATGAAAAATAT+AGG | - | chr4.4:88090248-88090267 | MS.gene37312:intron | 25.0% |
| ! | TATTCAAGCACTTATTTGTA+AGG | - | chr4.4:88088105-88088124 | MS.gene37312:intron | 25.0% |
| ! | TATTGATGTGTACATATGTT+TGG | + | chr4.4:88087563-88087582 | None:intergenic | 25.0% |
| ! | TCAATACTATCTTAGAGTTT+AGG | + | chr4.4:88089445-88089464 | None:intergenic | 25.0% |
| !! | AAATTAAGGATTCTGTTTCT+GGG | - | chr4.4:88087175-88087194 | MS.gene37312:intron | 25.0% |
| !! | ACTAGTACATAGGTATTTTT+AGG | + | chr4.4:88088197-88088216 | None:intergenic | 25.0% |
| !! | ATTTTTCATGTCTAACACAT+TGG | + | chr4.4:88090246-88090265 | None:intergenic | 25.0% |
| !! | CAATATAGAACTTTGTTTGT+AGG | - | chr4.4:88088931-88088950 | MS.gene37312:intron | 25.0% |
| !! | GTTTTATGTTTATGTACGTA+TGG | - | chr4.4:88088730-88088749 | MS.gene37312:CDS | 25.0% |
| !! | TCTAATGATGACTGATATTT+TGG | - | chr4.4:88090211-88090230 | MS.gene37312:intron | 25.0% |
| !! | TGACTTGTATATTGGTTATA+CGG | - | chr4.4:88089846-88089865 | MS.gene37312:intron | 25.0% |
| !! | TTCACATGTTTGTGTATTTT+AGG | - | chr4.4:88088057-88088076 | MS.gene37312:intron | 25.0% |
| !! | TTGATTTTAGATTCCTATCA+GGG | - | chr4.4:88089710-88089729 | MS.gene37312:intron | 25.0% |
| !!! | AAACTCTAAGATAGTATTGA+AGG | - | chr4.4:88089445-88089464 | MS.gene37312:intron | 25.0% |
| !!! | AGTTCATTATTTTGTATGAG+AGG | - | chr4.4:88089920-88089939 | MS.gene37312:intron | 25.0% |
| !!! | GCTATTTTAATAAGTTATCG+TGG | + | chr4.4:88088847-88088866 | None:intergenic | 25.0% |
| !!! | TATTTGTAAGGGTTTTAGTT+AGG | - | chr4.4:88088117-88088136 | MS.gene37312:intron | 25.0% |
| !!! | TTTGATTTTAGATTCCTATC+AGG | - | chr4.4:88089709-88089728 | MS.gene37312:intron | 25.0% |
| ACCATGTAAATTCAGGATTA+AGG | + | chr4.4:88090044-88090063 | None:intergenic | 30.0% | |
| ACCTTAATCCTGAATTTACA+TGG | - | chr4.4:88090040-88090059 | MS.gene37312:intron | 30.0% | |
| ATGGACTCGTTATTAAAGAA+GGG | - | chr4.4:88088566-88088585 | MS.gene37312:intron | 30.0% | |
| CAAGAATTTAAGCAAGTTCA+TGG | - | chr4.4:88088142-88088161 | MS.gene37312:intron | 30.0% | |
| GAAATTAAGGATTCTGTTTC+TGG | - | chr4.4:88087174-88087193 | MS.gene37312:intron | 30.0% | |
| GATCTCTCTAATCAAATTCT+TGG | + | chr4.4:88089222-88089241 | None:intergenic | 30.0% | |
| GCATTTGATGGAACTTTATT+TGG | - | chr4.4:88089095-88089114 | MS.gene37312:intron | 30.0% | |
| TACATATGTTTGGAAGTCTT+GGG | + | chr4.4:88087553-88087572 | None:intergenic | 30.0% | |
| TACCTACAAAAGTAGCTTAT+AGG | + | chr4.4:88089892-88089911 | None:intergenic | 30.0% | |
| TATATAGACCATCCGTTATT+TGG | - | chr4.4:88089752-88089771 | MS.gene37312:intron | 30.0% | |
| TATATCTCTGATCTATGTGA+AGG | - | chr4.4:88089244-88089263 | MS.gene37312:intron | 30.0% | |
| TCAGGATTAAGGTTAAAACT+TGG | + | chr4.4:88090033-88090052 | None:intergenic | 30.0% | |
| TGCATATGATTACTAGAGTT+TGG | - | chr4.4:88089283-88089302 | MS.gene37312:intron | 30.0% | |
| TGTAAATATTCTGCTAGCAA+AGG | - | chr4.4:88088002-88088021 | MS.gene37312:intron | 30.0% | |
| TTCAACTAAACAACATACTC+AGG | + | chr4.4:88087371-88087390 | None:intergenic | 30.0% | |
| ! | ACTTGTATATTGGTTATACG+GGG | - | chr4.4:88089848-88089867 | MS.gene37312:intron | 30.0% |
| ! | ATACCGGTACAAATTTTAAG+AGG | + | chr4.4:88089309-88089328 | None:intergenic | 30.0% |
| ! | ATTTCAAGTGTTGCATTTGA+TGG | - | chr4.4:88089083-88089102 | MS.gene37312:intron | 30.0% |
| ! | GACTTGTATATTGGTTATAC+GGG | - | chr4.4:88089847-88089866 | MS.gene37312:intron | 30.0% |
| ! | TAGTGGTATGACTTGTATAT+TGG | - | chr4.4:88089838-88089857 | MS.gene37312:intron | 30.0% |
| ! | TATCGGTCATTGATTAATCA+AGG | - | chr4.4:88087855-88087874 | MS.gene37312:intron | 30.0% |
| ! | TGATTTTAGATTCCTATCAG+GGG | - | chr4.4:88089711-88089730 | MS.gene37312:intron | 30.0% |
| !! | AATGATGACTGATATTTTGG+TGG | - | chr4.4:88090214-88090233 | MS.gene37312:intron | 30.0% |
| !! | AGCTTTAACTTGATAATGGA+TGG | + | chr4.4:88089487-88089506 | None:intergenic | 30.0% |
| !!! | ATCCTATAAGCTACTTTTGT+AGG | - | chr4.4:88089887-88089906 | MS.gene37312:intron | 30.0% |
| !!! | CCTTCCTTTTTCTTTGTTTT+CGG | - | chr4.4:88087340-88087359 | MS.gene37312:intron | 30.0% |
| ACATATGTTTGGAAGTCTTG+GGG | + | chr4.4:88087552-88087571 | None:intergenic | 35.0% | |
| AGTCATACCACTATCTAATG+TGG | + | chr4.4:88089831-88089850 | None:intergenic | 35.0% | |
| CACAAACATGTGAATGAATC+AGG | + | chr4.4:88088051-88088070 | None:intergenic | 35.0% | |
| CAGAAAAAAGACATTCCTCT+TGG | + | chr4.4:88089604-88089623 | None:intergenic | 35.0% | |
| CAGTGTAACCATGTAAATTC+AGG | + | chr4.4:88090051-88090070 | None:intergenic | 35.0% | |
| CCGAAAACAAAGAAAAAGGA+AGG | + | chr4.4:88087343-88087362 | None:intergenic | 35.0% | |
| CTATATGCAGAAGGTAAAGT+TGG | - | chr4.4:88088505-88088524 | MS.gene37312:intron | 35.0% | |
| CTGAATTTACATGGTTACAC+TGG | - | chr4.4:88090049-88090068 | MS.gene37312:intron | 35.0% | |
| GAACACAGCCACAAAATAAT+TGG | + | chr4.4:88090115-88090134 | None:intergenic | 35.0% | |
| GGAGCCAAATTCAACATTAA+TGG | - | chr4.4:88087951-88087970 | MS.gene37312:intron | 35.0% | |
| GTACATATGTTTGGAAGTCT+TGG | + | chr4.4:88087554-88087573 | None:intergenic | 35.0% | |
| GTCATACCACTATCTAATGT+GGG | + | chr4.4:88089830-88089849 | None:intergenic | 35.0% | |
| GTTTGTGTTTCATAGGTTTG+TGG | + | chr4.4:88087654-88087673 | None:intergenic | 35.0% | |
| TACATACCCAGATGAATATC+AGG | + | chr4.4:88089057-88089076 | None:intergenic | 35.0% | |
| TCTCAAATTATTGTCGGTGT+CGG | - | chr4.4:88087753-88087772 | MS.gene37312:intron | 35.0% | |
| TCTTGCAGTTAGAAACCTTA+TGG | - | chr4.4:88089572-88089591 | MS.gene37312:intron | 35.0% | |
| TGGACTCGTTATTAAAGAAG+GGG | - | chr4.4:88088567-88088586 | MS.gene37312:intron | 35.0% | |
| TGGCCTCTTAAAATTTGTAC+CGG | - | chr4.4:88089303-88089322 | MS.gene37312:intron | 35.0% | |
| TGTCTCTTTCAAATTGTCTC+AGG | - | chr4.4:88088429-88088448 | MS.gene37312:intron | 35.0% | |
| TTCAAACTCCAAACTGTATC+CGG | - | chr4.4:88088956-88088975 | MS.gene37312:intron | 35.0% | |
| TTGAAAGTCTCAACTCACAT+TGG | - | chr4.4:88089351-88089370 | MS.gene37312:intron | 35.0% | |
| TTGTGAATGCACTAGTACAT+AGG | + | chr4.4:88088207-88088226 | None:intergenic | 35.0% | |
| ! | ATATGTGGTGTCAAAGTTCT+TGG | - | chr4.4:88087487-88087506 | MS.gene37312:intron | 35.0% |
| ! | CTTGTATATTGGTTATACGG+GGG | - | chr4.4:88089849-88089868 | MS.gene37312:intron | 35.0% |
| ! | GATGGACTCGTTATTAAAGA+AGG | - | chr4.4:88088565-88088584 | MS.gene37312:intron | 35.0% |
| ! | TTGGCAAGAAATTTTGCCTT+TGG | + | chr4.4:88090014-88090033 | None:intergenic | 35.0% |
| !! | TAACTTGATAATGGATGGTC+CGG | + | chr4.4:88089482-88089501 | None:intergenic | 35.0% |
| !! | TGGTTTTGCATGGTTAAGTA+AGG | - | chr4.4:88089414-88089433 | MS.gene37312:intron | 35.0% |
| !!! | AGAGGAATGTCTTTTTTCTG+AGG | - | chr4.4:88089604-88089623 | MS.gene37312:intron | 35.0% |
| !!! | TCTTTTTAGCTGGTTTTGCA+TGG | - | chr4.4:88089404-88089423 | MS.gene37312:intron | 35.0% |
| AAAACCAGCTAAAAAGAGCG+AGG | + | chr4.4:88089401-88089420 | None:intergenic | 40.0% | |
| AACACCTCTACTCAATTCAG+AGG | - | chr4.4:88087930-88087949 | MS.gene37312:intron | 40.0% | |
| ACGCAAAACCTTATGGCATT+GGG | + | chr4.4:88087465-88087484 | None:intergenic | 40.0% | |
| AGCGTGGAATTCTCATTGTT+TGG | - | chr4.4:88087300-88087319 | MS.gene37312:intron | 40.0% | |
| AGTTCAACATCTCTTCCCAA+GGG | + | chr4.4:88088472-88088491 | None:intergenic | 40.0% | |
| ATGATGACACGTCTAATTCG+AGG | + | chr4.4:88087680-88087699 | None:intergenic | 40.0% | |
| ATTGATGCTACAACCACATC+AGG | - | chr4.4:88088343-88088362 | MS.gene37312:CDS | 40.0% | |
| CAACCCCAACATTACAAGAA+TGG | - | chr4.4:88090276-88090295 | MS.gene37312:CDS | 40.0% | |
| CACCTTCATTCATTCCTTCA+AGG | - | chr4.4:88088634-88088653 | MS.gene37312:intron | 40.0% | |
| CATATCCACGCAAAACCTTA+TGG | + | chr4.4:88087472-88087491 | None:intergenic | 40.0% | |
| CCACAAACACTTCAGATTGA+AGG | - | chr4.4:88087800-88087819 | MS.gene37312:intron | 40.0% | |
| CCTATATTCCCAATGCCATA+AGG | - | chr4.4:88087454-88087473 | MS.gene37312:intron | 40.0% | |
| CGCTCCATTCTTGTAATGTT+GGG | + | chr4.4:88090283-88090302 | None:intergenic | 40.0% | |
| CTCCTTGAAGGAATGAATGA+AGG | + | chr4.4:88088639-88088658 | None:intergenic | 40.0% | |
| GACAGAGAATTGGAATCACA+CGG | - | chr4.4:88087075-88087094 | MS.gene37312:CDS | 40.0% | |
| GAGATGTTGAACTCTTTCGT+CGG | - | chr4.4:88088479-88088498 | MS.gene37312:intron | 40.0% | |
| GCATCAACAAGAACAGTAAC+AGG | + | chr4.4:88089018-88089037 | None:intergenic | 40.0% | |
| GCGTGGAATTCTCATTGTTT+GGG | - | chr4.4:88087301-88087320 | MS.gene37312:intron | 40.0% | |
| GCTCCATTCTTGTAATGTTG+GGG | + | chr4.4:88090282-88090301 | None:intergenic | 40.0% | |
| GGTTGTAGCATCAATTGATG+TGG | + | chr4.4:88088338-88088357 | None:intergenic | 40.0% | |
| TATATGTGTCAGTGTCGTGT+CGG | + | chr4.4:88087711-88087730 | None:intergenic | 40.0% | |
| TCGCTCCATTCTTGTAATGT+TGG | + | chr4.4:88090284-88090303 | None:intergenic | 40.0% | |
| TCTTCTTGTAATCGACATGC+AGG | - | chr4.4:88087099-88087118 | MS.gene37312:CDS | 40.0% | |
| TGTTGTCCCAAATGTGATCA+AGG | - | chr4.4:88087259-88087278 | MS.gene37312:intron | 40.0% | |
| ! | CCTTATGGCATTGGGAATAT+AGG | + | chr4.4:88087457-88087476 | None:intergenic | 40.0% |
| ! | CCTTCAATCTGAAGTGTTTG+TGG | + | chr4.4:88087803-88087822 | None:intergenic | 40.0% |
| ! | GAAGGTGCAGAATTAGTTGA+TGG | - | chr4.4:88088547-88088566 | MS.gene37312:intron | 40.0% |
| ! | TAAGGTTTTGCGTGGATATG+TGG | - | chr4.4:88087472-88087491 | MS.gene37312:intron | 40.0% |
| !! | CTAAAGTGACTTGTTCGCTT+TGG | + | chr4.4:88087604-88087623 | None:intergenic | 40.0% |
| !! | GAGGAGTGTTTGTGTTTCAT+AGG | + | chr4.4:88087661-88087680 | None:intergenic | 40.0% |
| !! | GATTAGTCTCACATCGACTA+CGG | - | chr4.4:88087399-88087418 | MS.gene37312:intron | 40.0% |
| !! | TATTGATTCCTGCTCCTTGA+AGG | + | chr4.4:88088651-88088670 | None:intergenic | 40.0% |
| AAGGCATGTCTGACACATGT+CGG | - | chr4.4:88087819-88087838 | MS.gene37312:intron | 45.0% | |
| AATGAGAATTCCACGCTGTC+TGG | + | chr4.4:88087297-88087316 | None:intergenic | 45.0% | |
| ACAGTTTGCCGGATACAGTT+TGG | + | chr4.4:88088967-88088986 | None:intergenic | 45.0% | |
| ACCACATCAGGACATGATTG+TGG | - | chr4.4:88088355-88088374 | MS.gene37312:CDS | 45.0% | |
| ACCCAGATGAATATCAGGTG+TGG | + | chr4.4:88089052-88089071 | None:intergenic | 45.0% | |
| ACTACGGATGAGTTCGATGT+TGG | - | chr4.4:88087415-88087434 | MS.gene37312:intron | 45.0% | |
| ACTGCAAGATGCCTCGATAA+TGG | + | chr4.4:88089529-88089548 | None:intergenic | 45.0% | |
| AGCAAAATCTACCTGCCTTG+AGG | + | chr4.4:88090153-88090172 | None:intergenic | 45.0% | |
| AGCCACACCTGATATTCATC+TGG | - | chr4.4:88089047-88089066 | MS.gene37312:intron | 45.0% | |
| AGTCCTGTACACGTAAAAGG+AGG | - | chr4.4:88087230-88087249 | MS.gene37312:intron | 45.0% | |
| CACGCAAAACCTTATGGCAT+TGG | + | chr4.4:88087466-88087485 | None:intergenic | 45.0% | |
| CAGCATCAAAGACAGTTTGC+CGG | + | chr4.4:88088978-88088997 | None:intergenic | 45.0% | |
| CATCTTGCAGTAAGCAAGAG+GGG | - | chr4.4:88089538-88089557 | MS.gene37312:intron | 45.0% | |
| CATTCATTCCTTCAAGGAGC+AGG | - | chr4.4:88088640-88088659 | MS.gene37312:intron | 45.0% | |
| CCACAGCCTTGATCACATTT+GGG | + | chr4.4:88087268-88087287 | None:intergenic | 45.0% | |
| CTTGAGGGAAGCTAGAGTAT+CGG | + | chr4.4:88090137-88090156 | None:intergenic | 45.0% | |
| GAGAGTCCCACATTAGATAG+TGG | - | chr4.4:88089821-88089840 | MS.gene37312:intron | 45.0% | |
| GAGAGTCCTGTACACGTAAA+AGG | - | chr4.4:88087227-88087246 | MS.gene37312:intron | 45.0% | |
| GAGTTCAACATCTCTTCCCA+AGG | + | chr4.4:88088473-88088492 | None:intergenic | 45.0% | |
| GCAAAATCTACCTGCCTTGA+GGG | + | chr4.4:88090152-88090171 | None:intergenic | 45.0% | |
| GCATCTTGCAGTAAGCAAGA+GGG | - | chr4.4:88089537-88089556 | MS.gene37312:intron | 45.0% | |
| GCCACACCTGATATTCATCT+GGG | - | chr4.4:88089048-88089067 | MS.gene37312:intron | 45.0% | |
| GTCCTGTACACGTAAAAGGA+GGG | - | chr4.4:88087231-88087250 | MS.gene37312:intron | 45.0% | |
| GTGTTTGTGGCTATGAAGCA+CGG | + | chr4.4:88087790-88087809 | None:intergenic | 45.0% | |
| TCCACAATCATGTCCTGATG+TGG | + | chr4.4:88088359-88088378 | None:intergenic | 45.0% | |
| TCCACAGCCTTGATCACATT+TGG | + | chr4.4:88087269-88087288 | None:intergenic | 45.0% | |
| ! | AAAGTTGGTCCGACCTCAAA+AGG | - | chr4.4:88088520-88088539 | MS.gene37312:intron | 45.0% |
| ! | ACACTCATGAGACTCTGAGA+AGG | - | chr4.4:88088785-88088804 | MS.gene37312:CDS | 45.0% |
| ! | ACCTTATGGTTTGCACCAAG+AGG | - | chr4.4:88089586-88089605 | MS.gene37312:intron | 45.0% |
| ! | CAAGTGTGTTGACATGCATG+AGG | - | chr4.4:88089962-88089981 | MS.gene37312:intron | 45.0% |
| ! | CAATGCCATAAGGTTTTGCG+TGG | - | chr4.4:88087464-88087483 | MS.gene37312:intron | 45.0% |
| ! | GTATATTGGTTATACGGGGG+AGG | - | chr4.4:88089852-88089871 | MS.gene37312:intron | 45.0% |
| ! | GTGCTCTAGATGTCTAGTCT+AGG | - | chr4.4:88089786-88089805 | MS.gene37312:intron | 45.0% |
| ! | TCCTCTTGGTGCAAACCATA+AGG | + | chr4.4:88089590-88089609 | None:intergenic | 45.0% |
| ! | TGCACCTTCAGTTCCTTTTG+AGG | + | chr4.4:88088536-88088555 | None:intergenic | 45.0% |
| ! | TGTGGTGTCAAAGTTCTTGG+CGG | - | chr4.4:88087490-88087509 | MS.gene37312:intron | 45.0% |
| ! | TTCCCTCCTTTTACGTGTAC+AGG | + | chr4.4:88087236-88087255 | None:intergenic | 45.0% |
| !! | CAAGATGCCTCGATAATGGA+TGG | + | chr4.4:88089525-88089544 | None:intergenic | 45.0% |
| !! | TGATCCTCGCTCTTTTTAGC+TGG | - | chr4.4:88089394-88089413 | MS.gene37312:intron | 45.0% |
| !!! | CCTTCAGTTCCTTTTGAGGT+CGG | + | chr4.4:88088532-88088551 | None:intergenic | 45.0% |
| AGCAGGAATCAATAGCCTGG+TGG | - | chr4.4:88088657-88088676 | MS.gene37312:intron | 50.0% | |
| AGGAGCAGGAATCAATAGCC+TGG | - | chr4.4:88088654-88088673 | MS.gene37312:intron | 50.0% | |
| AGTACGCGAACATGATCCCT+TGG | - | chr4.4:88088453-88088472 | MS.gene37312:intron | 50.0% | |
| AGTCGGACCATCCATTATCG+AGG | - | chr4.4:88089515-88089534 | MS.gene37312:intron | 50.0% | |
| ATCAATAGCCTGGTGGTCAC+TGG | - | chr4.4:88088664-88088683 | MS.gene37312:intron | 50.0% | |
| CATCCGTTATTTGGCCACGT+GGG | - | chr4.4:88089761-88089780 | MS.gene37312:intron | 50.0% | |
| CCCAAATGTGATCAAGGCTG+TGG | - | chr4.4:88087265-88087284 | MS.gene37312:intron | 50.0% | |
| CCGACCTCAAAAGGAACTGA+AGG | - | chr4.4:88088529-88088548 | MS.gene37312:intron | 50.0% | |
| CGTCGGCATCTATATGCAGA+AGG | - | chr4.4:88088496-88088515 | MS.gene37312:intron | 50.0% | |
| GACTCTGATACACCCCTGAT+AGG | + | chr4.4:88089726-88089745 | None:intergenic | 50.0% | |
| GAGTGTAGGGAGCAACAACA+AGG | + | chr4.4:88087530-88087549 | None:intergenic | 50.0% | |
| GGCATCTTGCAGTAAGCAAG+AGG | - | chr4.4:88089536-88089555 | MS.gene37312:intron | 50.0% | |
| GGCTCCTCTGAATTGAGTAG+AGG | + | chr4.4:88087937-88087956 | None:intergenic | 50.0% | |
| GTACGCGAACATGATCCCTT+GGG | - | chr4.4:88088454-88088473 | MS.gene37312:intron | 50.0% | |
| TCTGAGGAGCTCTTGCTCTA+GGG | - | chr4.4:88089620-88089639 | MS.gene37312:intron | 50.0% | |
| TTAACTCACCAGTGACCACC+AGG | + | chr4.4:88088675-88088694 | None:intergenic | 50.0% | |
| ! | CGATACTCTAGCTTCCCTCA+AGG | - | chr4.4:88090135-88090154 | MS.gene37312:CDS | 50.0% |
| ! | TCGGTGTCTCGTGGCTATAT+CGG | - | chr4.4:88087838-88087857 | MS.gene37312:intron | 50.0% |
| ! | TGGAAGTCTTGGGGAGTGTA+GGG | + | chr4.4:88087543-88087562 | None:intergenic | 50.0% |
| ! | TTCTGAGGAGCTCTTGCTCT+AGG | - | chr4.4:88089619-88089638 | MS.gene37312:intron | 50.0% |
| ! | TTGGAAGTCTTGGGGAGTGT+AGG | + | chr4.4:88087544-88087563 | None:intergenic | 50.0% |
| CCATCCGTTATTTGGCCACG+TGG | - | chr4.4:88089760-88089779 | MS.gene37312:intron | 55.0% | |
| CGACCCACGTGGCCAAATAA+CGG | + | chr4.4:88089767-88089786 | None:intergenic | 55.0% | |
| CTTGCAGTAAGCAAGAGGGG+AGG | - | chr4.4:88089541-88089560 | MS.gene37312:intron | 55.0% | |
| GTGGAAATTGCCAGACAGCG+TGG | - | chr4.4:88087284-88087303 | MS.gene37312:intron | 55.0% | |
| GTGGCTATGAAGCACGGACA+CGG | + | chr4.4:88087784-88087803 | None:intergenic | 55.0% | |
| ! | ACTCTAGCTTCCCTCAAGGC+AGG | - | chr4.4:88090139-88090158 | MS.gene37312:CDS | 55.0% |
| ! | CCACGTGGCCAAATAACGGA+TGG | + | chr4.4:88089763-88089782 | None:intergenic | 55.0% |
| ! | TGACACATGTCGGTGTCTCG+TGG | - | chr4.4:88087829-88087848 | MS.gene37312:intron | 55.0% |
| ! | CATCTAGAGCACGACCCACG+TGG | + | chr4.4:88089778-88089797 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 88087073 | 88090316 | 88087073 | ID=MS.gene37312 |
| chr4.4 | mRNA | 88087073 | 88090316 | 88087073 | ID=MS.gene37312.t1;Parent=MS.gene37312 |
| chr4.4 | exon | 88090269 | 88090316 | 88090269 | ID=MS.gene37312.t1.exon1;Parent=MS.gene37312.t1 |
| chr4.4 | CDS | 88090269 | 88090316 | 88090269 | ID=cds.MS.gene37312.t1;Parent=MS.gene37312.t1 |
| chr4.4 | exon | 88090067 | 88090180 | 88090067 | ID=MS.gene37312.t1.exon2;Parent=MS.gene37312.t1 |
| chr4.4 | CDS | 88090067 | 88090180 | 88090067 | ID=cds.MS.gene37312.t1;Parent=MS.gene37312.t1 |
| chr4.4 | exon | 88088704 | 88088938 | 88088704 | ID=MS.gene37312.t1.exon3;Parent=MS.gene37312.t1 |
| chr4.4 | CDS | 88088704 | 88088938 | 88088704 | ID=cds.MS.gene37312.t1;Parent=MS.gene37312.t1 |
| chr4.4 | exon | 88088320 | 88088436 | 88088320 | ID=MS.gene37312.t1.exon4;Parent=MS.gene37312.t1 |
| chr4.4 | CDS | 88088320 | 88088436 | 88088320 | ID=cds.MS.gene37312.t1;Parent=MS.gene37312.t1 |
| chr4.4 | exon | 88087073 | 88087146 | 88087073 | ID=MS.gene37312.t1.exon5;Parent=MS.gene37312.t1 |
| chr4.4 | CDS | 88087073 | 88087146 | 88087073 | ID=cds.MS.gene37312.t1;Parent=MS.gene37312.t1 |
| Gene Sequence |
| Protein sequence |
