Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38269.t1 | XP_003617862.1 | 97.3 | 773 | 21 | 0 | 1 | 773 | 1 | 773 | 0.00E+00 | 1289.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38269.t1 | Q8VZS6 | 26.8 | 772 | 339 | 28 | 13 | 773 | 11 | 567 | 4.8e-31 | 137.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38269.t1 | G7KEK0 | 97.3 | 773 | 21 | 0 | 1 | 773 | 1 | 773 | 0.0e+00 | 1289.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene38269 | -0.801686 | 8.01E-49 | -1.69E-46 |
| MS.gene049343 | MS.gene38269 | -0.817707 | 2.87E-52 | -1.69E-46 |
| MS.gene049958 | MS.gene38269 | -0.817201 | 3.73E-52 | -1.69E-46 |
| MS.gene050750 | MS.gene38269 | -0.809746 | 1.62E-50 | -1.69E-46 |
| MS.gene050905 | MS.gene38269 | 0.817257 | 3.62E-52 | -1.69E-46 |
| MS.gene051190 | MS.gene38269 | -0.822158 | 2.75E-53 | -1.69E-46 |
| MS.gene051594 | MS.gene38269 | -0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene051924 | MS.gene38269 | 0.817792 | 2.74E-52 | -1.69E-46 |
| MS.gene051926 | MS.gene38269 | 0.804183 | 2.44E-49 | -1.69E-46 |
| MS.gene052056 | MS.gene38269 | 0.802372 | 5.79E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene38269 | -0.819499 | 1.12E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene38269 | -0.803922 | 2.77E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene38269 | -0.807159 | 5.79E-50 | -1.69E-46 |
| MS.gene052965 | MS.gene38269 | 0.80961 | 1.74E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene38269 | 0.801794 | 7.61E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene38269 | -0.817031 | 4.07E-52 | -1.69E-46 |
| MS.gene053641 | MS.gene38269 | -0.805309 | 1.42E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene38269 | -0.84037 | 9.06E-58 | -1.69E-46 |
| MS.gene05415 | MS.gene38269 | -0.840957 | 6.36E-58 | -1.69E-46 |
| MS.gene054236 | MS.gene38269 | -0.821633 | 3.64E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene38269 | -0.809988 | 1.44E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene38269 | 0.890125 | 1.31E-73 | -1.69E-46 |
| MS.gene054467 | MS.gene38269 | -0.803235 | 3.84E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene38269 | -0.827363 | 1.63E-54 | -1.69E-46 |
| MS.gene054559 | MS.gene38269 | -0.813943 | 1.98E-51 | -1.69E-46 |
| MS.gene05468 | MS.gene38269 | -0.803632 | 3.18E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene38269 | -0.812113 | 4.99E-51 | -1.69E-46 |
| MS.gene055166 | MS.gene38269 | -0.803019 | 4.26E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene38269 | -0.805103 | 1.57E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene38269 | -0.829657 | 4.55E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene38269 | -0.811376 | 7.22E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene38269 | -0.829847 | 4.09E-55 | -1.69E-46 |
| MS.gene057414 | MS.gene38269 | -0.805419 | 1.35E-49 | -1.69E-46 |
| MS.gene058223 | MS.gene38269 | 0.812001 | 5.28E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene38269 | -0.807566 | 4.75E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene38269 | -0.802579 | 5.25E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene38269 | 0.819973 | 8.76E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene38269 | -0.812503 | 4.10E-51 | -1.69E-46 |
| MS.gene060373 | MS.gene38269 | -0.832135 | 1.12E-55 | -1.69E-46 |
| MS.gene060634 | MS.gene38269 | 0.838405 | 2.93E-57 | -1.69E-46 |
| MS.gene061040 | MS.gene38269 | 0.830878 | 2.29E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene38269 | 0.80827 | 3.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38269.t1 | MTR_5g096290 | 98.060 | 773 | 15 | 0 | 1 | 773 | 1 | 773 | 0.0 | 1526 |
| MS.gene38269.t1 | MTR_5g069290 | 35.379 | 896 | 418 | 28 | 9 | 773 | 3 | 868 | 1.57e-108 | 352 |
| MS.gene38269.t1 | MTR_8g019650 | 59.155 | 71 | 27 | 2 | 6 | 76 | 9 | 77 | 1.86e-17 | 87.8 |
| MS.gene38269.t1 | MTR_8g019650 | 31.356 | 236 | 122 | 14 | 565 | 773 | 784 | 1006 | 5.67e-11 | 66.6 |
| MS.gene38269.t1 | MTR_8g088190 | 41.758 | 91 | 47 | 3 | 1 | 89 | 1 | 87 | 3.19e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38269.t1 | AT3G07660 | 36.550 | 487 | 214 | 16 | 371 | 773 | 366 | 841 | 1.47e-60 | 220 |
| MS.gene38269.t1 | AT3G07660 | 40.650 | 123 | 73 | 0 | 9 | 131 | 3 | 125 | 8.34e-19 | 92.0 |
| MS.gene38269.t1 | AT3G13222 | 44.366 | 142 | 65 | 3 | 5 | 145 | 3 | 131 | 8.20e-29 | 122 |
| MS.gene38269.t1 | AT3G13222 | 28.502 | 414 | 192 | 17 | 371 | 773 | 247 | 567 | 7.12e-15 | 79.0 |
| MS.gene38269.t1 | AT1G55820 | 46.043 | 139 | 61 | 5 | 9 | 147 | 6 | 130 | 3.12e-26 | 114 |
| MS.gene38269.t1 | AT1G55820 | 29.771 | 524 | 281 | 20 | 279 | 773 | 110 | 575 | 6.97e-26 | 113 |
| MS.gene38269.t1 | AT3G13990 | 28.070 | 285 | 166 | 10 | 1 | 271 | 2 | 261 | 3.46e-14 | 77.0 |
| MS.gene38269.t1 | AT3G13990 | 28.070 | 285 | 166 | 10 | 1 | 271 | 2 | 261 | 3.58e-14 | 77.0 |
| MS.gene38269.t1 | AT4G18150 | 36.029 | 136 | 70 | 6 | 7 | 130 | 2 | 132 | 1.01e-12 | 72.4 |
Find 239 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCAAAAGCTTCTCTATTT+AGG | 0.177667 | 5.3:+77825218 | MS.gene38269:CDS |
| CCAGCCGCGGCTGCAGCTGC+TGG | 0.207112 | 5.3:+77832633 | MS.gene38269:CDS |
| GTGGTGGTGGTGGCGGGTCT+AGG | 0.212056 | 5.3:+77825072 | MS.gene38269:CDS |
| TGCATTGGAGACAGGTAAAT+TGG | 0.214964 | 5.3:-77832552 | None:intergenic |
| CTCCGTGAGCAGCCTGTGTC+TGG | 0.219809 | 5.3:-77833181 | None:intergenic |
| CACTGCAGTATCTTCATTTC+CGG | 0.236484 | 5.3:-77832793 | None:intergenic |
| AATTTCATGTCTACCATGTT+AGG | 0.248936 | 5.3:+77831267 | MS.gene38269:CDS |
| GCTGGGCCAAATCATGTTAA+AGG | 0.261520 | 5.3:+77828768 | MS.gene38269:CDS |
| AAGTCTGGTCACGGTTCTTC+TGG | 0.281009 | 5.3:+77828444 | MS.gene38269:CDS |
| GGCCGCGGTGGTGGTGGTGG+CGG | 0.286927 | 5.3:+77825065 | MS.gene38269:CDS |
| CACCGCCAACACCAGGAATC+TGG | 0.293289 | 5.3:-77828710 | None:intergenic |
| CGGGTTGCTTGTTGAATTCA+TGG | 0.297959 | 5.3:-77828847 | None:intergenic |
| TTTGACTTTGGTATTGCATT+CGG | 0.304863 | 5.3:-77828867 | None:intergenic |
| CAAGTGCCTGAGGCTTTAAA+AGG | 0.306095 | 5.3:+77829559 | MS.gene38269:CDS |
| TTGTTTCCTTTAACATGATT+TGG | 0.306784 | 5.3:-77828774 | None:intergenic |
| CTTCCTATTCGAAGGGAAAA+TGG | 0.306891 | 5.3:+77827819 | MS.gene38269:CDS |
| CAGCAGTCTCAAGCTGTCGC+TGG | 0.314498 | 5.3:+77833260 | MS.gene38269:CDS |
| GCATTCACTGAAGAAGATTC+AGG | 0.317221 | 5.3:-77829670 | None:intergenic |
| GTTCAAAGTGCTCAAAACTA+TGG | 0.320477 | 5.3:+77831240 | MS.gene38269:CDS |
| CCATCTATCTCCCAGATTCC+TGG | 0.331270 | 5.3:+77828699 | MS.gene38269:CDS |
| CTGTAGAGGTGGAGTTGGGC+TGG | 0.331789 | 5.3:-77832442 | None:intergenic |
| GGCTATTCCTCAAACTTTCC+TGG | 0.336120 | 5.3:+77827324 | MS.gene38269:CDS |
| TCGCTCCAGCCTTGAATTGC+GGG | 0.342458 | 5.3:-77832671 | None:intergenic |
| ATTTGAGGGTAGTGAGCTTC+AGG | 0.344869 | 5.3:+77831305 | MS.gene38269:CDS |
| CCTAGTCCGACCGTGAATAC+TGG | 0.345879 | 5.3:+77832762 | MS.gene38269:CDS |
| AAATTACAACCTTGAGGCTT+GGG | 0.350670 | 5.3:-77827916 | None:intergenic |
| CCAGCAGCTGCAGCCGCGGC+TGG | 0.355020 | 5.3:-77832633 | None:intergenic |
| TTAAAAGGTGGTCTGACATT+TGG | 0.355222 | 5.3:+77829574 | MS.gene38269:CDS |
| GGCTCATATTGGAATTCCTT+CGG | 0.356484 | 5.3:+77832707 | MS.gene38269:CDS |
| TGGAGCGAACACAGGAAATA+TGG | 0.359123 | 5.3:+77832686 | MS.gene38269:CDS |
| TGCTAGATGGTGGTGGTGGT+GGG | 0.362600 | 5.3:+77827790 | MS.gene38269:intron |
| ATCAAGATGATCTCCGTGTT+CGG | 0.367141 | 5.3:-77831082 | None:intergenic |
| TTGACTTTGGTATTGCATTC+GGG | 0.371451 | 5.3:-77828866 | None:intergenic |
| GCACTTTGAACAGTCAGAAT+TGG | 0.377482 | 5.3:-77831228 | None:intergenic |
| ATGCTGAAACTGTTAATTCA+AGG | 0.379384 | 5.3:+77829689 | MS.gene38269:CDS |
| AGCGGCGGCCGCGGTGGTGG+TGG | 0.379951 | 5.3:+77825059 | MS.gene38269:CDS |
| GCATTGGAGACAGGTAAATT+GGG | 0.381244 | 5.3:-77832551 | None:intergenic |
| ACAGGAAATATGGCTCATAT+TGG | 0.381667 | 5.3:+77832696 | MS.gene38269:CDS |
| TTGCTAGATGGTGGTGGTGG+TGG | 0.383397 | 5.3:+77827789 | MS.gene38269:intron |
| GCCGCGGTGGTGGTGGTGGC+GGG | 0.386945 | 5.3:+77825066 | MS.gene38269:CDS |
| GTTGTCCAGTTGTGTAGATC+TGG | 0.392117 | 5.3:-77832833 | None:intergenic |
| TCAGGCACTTGGAAATGGTT+TGG | 0.399267 | 5.3:-77829547 | None:intergenic |
| GAAACGGGCTGTGGAGAAAC+AGG | 0.403673 | 5.3:-77832474 | None:intergenic |
| AAGCCTCAGGCACTTGGAAA+TGG | 0.404582 | 5.3:-77829552 | None:intergenic |
| GTTCCCTCTCCCGCAATTCA+AGG | 0.408553 | 5.3:+77832662 | MS.gene38269:CDS |
| TTCCTCTTCAGATCCTGTGC+TGG | 0.408962 | 5.3:+77828674 | MS.gene38269:CDS |
| TCTGAAGGCATATCTATAAC+TGG | 0.409197 | 5.3:+77831147 | MS.gene38269:CDS |
| TCAAGATGATCTCCGTGTTC+GGG | 0.409737 | 5.3:-77831081 | None:intergenic |
| CTTTCAACTTCATTTGACTT+TGG | 0.410792 | 5.3:-77828879 | None:intergenic |
| CAAATGAAGTTGAAAGTAAC+CGG | 0.414132 | 5.3:+77828886 | MS.gene38269:CDS |
| AGGTGGTTGGCTAACGCAAC+TGG | 0.415387 | 5.3:-77828952 | None:intergenic |
| GGCGGCCGCGGTGGTGGTGG+TGG | 0.416006 | 5.3:+77825062 | MS.gene38269:CDS |
| GCTCATATTGGAATTCCTTC+GGG | 0.416308 | 5.3:+77832708 | MS.gene38269:CDS |
| GATCTACACAACTGGACAAC+TGG | 0.418532 | 5.3:+77832836 | MS.gene38269:CDS |
| GTTCGGGCAATGGCACGCTT+TGG | 0.419058 | 5.3:-77831065 | None:intergenic |
| CCAGTATTCACGGTCGGACT+AGG | 0.420427 | 5.3:-77832762 | None:intergenic |
| TGTAGAGGTGGAGTTGGGCT+GGG | 0.425157 | 5.3:-77832441 | None:intergenic |
| ATGAGCGGCGGCCGCGGTGG+TGG | 0.430580 | 5.3:+77825056 | MS.gene38269:CDS |
| CATTGTAGGGATTGAGCAGC+AGG | 0.430709 | 5.3:+77827238 | MS.gene38269:intron |
| GCTGCTCACGGAGCATTTCC+CGG | 0.434441 | 5.3:+77833191 | MS.gene38269:CDS |
| AATCAATCCAATGGGAAGTC+TGG | 0.436871 | 5.3:+77828429 | MS.gene38269:CDS |
| GTTGCAAACCAGACATATCT+TGG | 0.437494 | 5.3:-77833109 | None:intergenic |
| GAAAACCAGATCTACACAAC+TGG | 0.437940 | 5.3:+77832828 | MS.gene38269:CDS |
| GGCGGGCCTACAGTTTCAAC+AGG | 0.437990 | 5.3:-77833284 | None:intergenic |
| CAGCCGCGGCTGCAGCTGCT+GGG | 0.442511 | 5.3:+77832634 | MS.gene38269:CDS |
| CAACACTACCTATGAGAGAT+TGG | 0.442663 | 5.3:-77828467 | None:intergenic |
| CAGCTTGAGACTGCTGCAAA+AGG | 0.443273 | 5.3:-77833253 | None:intergenic |
| GAAATTACAACCTTGAGGCT+TGG | 0.445152 | 5.3:-77827917 | None:intergenic |
| AGTTGAGACCTCTGTGACAT+TGG | 0.448927 | 5.3:-77829476 | None:intergenic |
| GACTGCTGCAAAAGGGTAGA+AGG | 0.449419 | 5.3:-77833245 | None:intergenic |
| AGCTCTGTAGAGGTGGAGTT+GGG | 0.449566 | 5.3:-77832446 | None:intergenic |
| GTTAACAATACCTCCTGCTT+TGG | 0.450263 | 5.3:-77831192 | None:intergenic |
| TACCGCCTTCTCAGATCAAT+TGG | 0.451052 | 5.3:+77833327 | MS.gene38269:CDS |
| AAAATTGATGCATTGGAGAC+AGG | 0.452279 | 5.3:-77832560 | None:intergenic |
| CTGCCCTGGTTGATAGATAC+CGG | 0.454716 | 5.3:-77833210 | None:intergenic |
| TGGTGGTGGTGGCGGGTCTA+GGG | 0.455666 | 5.3:+77825073 | MS.gene38269:CDS |
| TCCGTGAGCAGCCTGTGTCT+GGG | 0.456000 | 5.3:-77833180 | None:intergenic |
| TAGAAGCTGAACTGCTTTGT+GGG | 0.456515 | 5.3:-77828497 | None:intergenic |
| GGATTGATTTGCAGCACTAC+GGG | 0.459068 | 5.3:-77828415 | None:intergenic |
| TTAGAAGCTGAACTGCTTTG+TGG | 0.462040 | 5.3:-77828498 | None:intergenic |
| GTTGCAAGGGCTCAGATAAC+CGG | 0.463340 | 5.3:-77828905 | None:intergenic |
| ATTGCAGACTGCAAGTTCTC+AGG | 0.466939 | 5.3:+77832410 | MS.gene38269:intron |
| CCAGCTAACTTCTTCCCATA+TGG | 0.466958 | 5.3:+77832516 | MS.gene38269:CDS |
| TAGATCAAAACAACGTGGAC+AGG | 0.467933 | 5.3:+77827275 | MS.gene38269:CDS |
| TTCCGTACATTGTTGGGGAT+CGG | 0.469554 | 5.3:-77825098 | None:intergenic |
| CTATATAACCTTGCCCCTCA+AGG | 0.469727 | 5.3:+77833140 | MS.gene38269:CDS |
| GGGAGTGACCGGATATCTGC+TGG | 0.471503 | 5.3:+77828750 | MS.gene38269:CDS |
| ATTTCATGTCTACCATGTTA+GGG | 0.475944 | 5.3:+77831268 | MS.gene38269:CDS |
| AGCAGTCTCAAGCTGTCGCT+GGG | 0.477878 | 5.3:+77833261 | MS.gene38269:CDS |
| CCATATGGGAAGAAGTTAGC+TGG | 0.481888 | 5.3:-77832516 | None:intergenic |
| TTCCCTCAACAGCCATCAGC+TGG | 0.482033 | 5.3:+77832597 | MS.gene38269:CDS |
| CCAGCCTTGAATTGCGGGAG+AGG | 0.483908 | 5.3:-77832666 | None:intergenic |
| CCAGGAATCTGGGAGATAGA+TGG | 0.484625 | 5.3:-77828699 | None:intergenic |
| TTCGCTCCAGCCTTGAATTG+CGG | 0.486110 | 5.3:-77832672 | None:intergenic |
| TGGTGGCCTAAAATAAGAAA+CGG | 0.489748 | 5.3:-77832490 | None:intergenic |
| TGGATTGATTTGCAGCACTA+CGG | 0.490684 | 5.3:-77828416 | None:intergenic |
| TCCCAGATTCCTGGTGTTGG+CGG | 0.494415 | 5.3:+77828708 | MS.gene38269:CDS |
| GATTTGGCCCAGCAGATATC+CGG | 0.495485 | 5.3:-77828758 | None:intergenic |
| GAGCTCTGTAGAGGTGGAGT+TGG | 0.496736 | 5.3:-77832447 | None:intergenic |
| GTCAGAATTGGATGGCCCTC+GGG | 0.498580 | 5.3:-77831216 | None:intergenic |
| GTGAATACTGGAAGCTCTGC+CGG | 0.500908 | 5.3:+77832774 | MS.gene38269:CDS |
| GAAAGAATGAGCGGCGGCCG+CGG | 0.501038 | 5.3:+77825050 | None:intergenic |
| CATGTTTGATTCTTTAAGAA+CGG | 0.501860 | 5.3:-77825180 | None:intergenic |
| GGACCCGGACTTATCATTCT+CGG | 0.502645 | 5.3:-77828826 | None:intergenic |
| TTGGTCAGTTCTTGTAATTG+AGG | 0.502651 | 5.3:-77828598 | None:intergenic |
| AGTTCTTGTAATTGAGGCAA+AGG | 0.505006 | 5.3:-77828592 | None:intergenic |
| ATCTCCCAGATTCCTGGTGT+TGG | 0.505270 | 5.3:+77828705 | MS.gene38269:CDS |
| CTCTTGCTAGATGGTGGTGG+TGG | 0.506078 | 5.3:+77827786 | MS.gene38269:intron |
| GGTGCTGTCAGTAGGGAAGT+AGG | 0.506343 | 5.3:+77828729 | MS.gene38269:CDS |
| AAAACAACGTGGACAGGGGA+GGG | 0.506744 | 5.3:+77827281 | MS.gene38269:CDS |
| GAGATAGATGGTGCCAGCAC+AGG | 0.507181 | 5.3:-77828687 | None:intergenic |
| TCAACATCAAATTTCTGTAC+CGG | 0.510047 | 5.3:+77828644 | MS.gene38269:CDS |
| AAGGTGAGATGTTGCCCTTG+AGG | 0.511656 | 5.3:-77833155 | None:intergenic |
| TCTTCTGGCCAATCTCTCAT+AGG | 0.512504 | 5.3:+77828459 | MS.gene38269:CDS |
| AGGTGAGATGTTGCCCTTGA+GGG | 0.513539 | 5.3:-77833154 | None:intergenic |
| GCTGATAAGATCCTGGAGGC+GGG | 0.514023 | 5.3:-77833301 | None:intergenic |
| CCTCTCCCGCAATTCAAGGC+TGG | 0.516531 | 5.3:+77832666 | MS.gene38269:CDS |
| CCGTGAGCAGCCTGTGTCTG+GGG | 0.517112 | 5.3:-77833179 | None:intergenic |
| GATCCCAGCAGCTGCAGCCG+CGG | 0.517466 | 5.3:-77832637 | None:intergenic |
| AAAGATTGAGCAGCCAAAGC+AGG | 0.517956 | 5.3:+77831179 | MS.gene38269:CDS |
| AAACAACGTGGACAGGGGAG+GGG | 0.518758 | 5.3:+77827282 | MS.gene38269:CDS |
| TTCCGATCCCCAACAATGTA+CGG | 0.520407 | 5.3:+77825096 | MS.gene38269:CDS |
| ATTGAGGCAAAGGTTTGAGT+AGG | 0.520561 | 5.3:-77828582 | None:intergenic |
| GCATCCGAGAATGATAAGTC+CGG | 0.521679 | 5.3:+77828822 | MS.gene38269:CDS |
| GGTGGCCTAAAATAAGAAAC+GGG | 0.522599 | 5.3:-77832489 | None:intergenic |
| ACTCAGCAAGTTCAATTTGA+GGG | 0.523341 | 5.3:+77831291 | MS.gene38269:CDS |
| ACCGCCAACACCAGGAATCT+GGG | 0.523803 | 5.3:-77828709 | None:intergenic |
| ATTGAGCAGCAGGGTTTCTG+AGG | 0.524138 | 5.3:+77827248 | MS.gene38269:CDS |
| GGAAACAAACTTGAAGAAGC+TGG | 0.524687 | 5.3:+77828789 | MS.gene38269:CDS |
| GGGAAGAAGTTAGCTGGGTA+TGG | 0.526076 | 5.3:-77832510 | None:intergenic |
| TGCTGATAAGATCCTGGAGG+CGG | 0.526275 | 5.3:-77833302 | None:intergenic |
| TGATCTCCGTGTTCGGGCAA+TGG | 0.526759 | 5.3:-77831075 | None:intergenic |
| AAACTTTACCTTGAGGTGGT+TGG | 0.528234 | 5.3:-77828965 | None:intergenic |
| GTGTTGGCGGTGCTGTCAGT+AGG | 0.529908 | 5.3:+77828721 | MS.gene38269:CDS |
| AGAATGAGCGGCGGCCGCGG+TGG | 0.530461 | 5.3:+77825053 | None:intergenic |
| GCACCAGGCCAAGATATGTC+TGG | 0.533967 | 5.3:+77833101 | MS.gene38269:CDS |
| GGACTAGGAGCATATCCAAC+AGG | 0.533992 | 5.3:-77832747 | None:intergenic |
| GATCTCTCTGATGTCGTGGA+TGG | 0.534492 | 5.3:-77825123 | None:intergenic |
| CCCCAGACACAGGCTGCTCA+CGG | 0.537435 | 5.3:+77833179 | MS.gene38269:CDS |
| GAAACTGTAGGCCCGCCTCC+AGG | 0.540189 | 5.3:+77833290 | MS.gene38269:CDS |
| CTAAAATAAGAAACGGGCTG+TGG | 0.541113 | 5.3:-77832483 | None:intergenic |
| GAATTCCAATTGATCTGAGA+AGG | 0.541172 | 5.3:-77833332 | None:intergenic |
| AGTCAGAATTGGATGGCCCT+CGG | 0.541571 | 5.3:-77831217 | None:intergenic |
| AAAGGTTTGAGTAGGAGAAG+TGG | 0.542499 | 5.3:-77828574 | None:intergenic |
| GACTCAGCAAGTTCAATTTG+AGG | 0.543960 | 5.3:+77831290 | MS.gene38269:CDS |
| GTGCTGCAAATCAATCCAAT+GGG | 0.544641 | 5.3:+77828421 | MS.gene38269:CDS |
| AAATGTACCAGGAAAGTTTG+AGG | 0.546172 | 5.3:-77827331 | None:intergenic |
| TCATATATCACTCCACCTGT+TGG | 0.546789 | 5.3:+77832732 | MS.gene38269:CDS |
| TTGCCAGCTGATGGCTGTTG+AGG | 0.547973 | 5.3:-77832600 | None:intergenic |
| GATGTTGCCCTTGAGGGGCA+AGG | 0.549942 | 5.3:-77833148 | None:intergenic |
| GAGTTCTCTCTGCAATGTGA+TGG | 0.550044 | 5.3:-77827845 | None:intergenic |
| CAAAACAACGTGGACAGGGG+AGG | 0.551743 | 5.3:+77827280 | MS.gene38269:CDS |
| GCTGGGCCTGTTGAAACTGT+AGG | 0.551856 | 5.3:+77833278 | MS.gene38269:CDS |
| CGGTGATCTCTCTGATGTCG+TGG | 0.555061 | 5.3:-77825127 | None:intergenic |
| AGCTTGAGACTGCTGCAAAA+GGG | 0.555438 | 5.3:-77833252 | None:intergenic |
| GGCAGAGCTTCCAGTATTCA+CGG | 0.556493 | 5.3:-77832772 | None:intergenic |
| GCTTGTTGAATTCATGGACC+CGG | 0.556640 | 5.3:-77828841 | None:intergenic |
| GAGGAACTTACAACAAAGGA+AGG | 0.557950 | 5.3:-77831348 | None:intergenic |
| AGTGCTGCAAATCAATCCAA+TGG | 0.560942 | 5.3:+77828420 | MS.gene38269:CDS |
| GTAGGGAAGTAGGGAGTGAC+CGG | 0.561882 | 5.3:+77828739 | MS.gene38269:CDS |
| CAACATCAAATTTCTGTACC+GGG | 0.562172 | 5.3:+77828645 | MS.gene38269:CDS |
| CTGTAAATCTGGCTGAGTAG+AGG | 0.562674 | 5.3:-77827874 | None:intergenic |
| GGAGGAACCTTCCTATTCGA+AGG | 0.562842 | 5.3:+77827811 | MS.gene38269:CDS |
| GTGCTGTCAGTAGGGAAGTA+GGG | 0.563373 | 5.3:+77828730 | MS.gene38269:CDS |
| TTCAAGGCTGGAGCGAACAC+AGG | 0.563651 | 5.3:+77832678 | MS.gene38269:CDS |
| GGTAGCTGCTGATAAGATCC+TGG | 0.567965 | 5.3:-77833308 | None:intergenic |
| CTCAACTCAGTTGACTGCAC+AGG | 0.568411 | 5.3:-77829508 | None:intergenic |
| CGTTCTTAAAGAATCAAACA+TGG | 0.570146 | 5.3:+77825181 | MS.gene38269:CDS |
| ACTGAAGAAGATTCAGGAGT+GGG | 0.570709 | 5.3:-77829664 | None:intergenic |
| GGTATAGAGCTCTGTAGAGG+TGG | 0.570730 | 5.3:-77832453 | None:intergenic |
| CGTGAGCAGCCTGTGTCTGG+GGG | 0.572469 | 5.3:-77833178 | None:intergenic |
| CAGCCTTGAATTGCGGGAGA+GGG | 0.573024 | 5.3:-77832665 | None:intergenic |
| AAACCAGACATATCTTGGCC+TGG | 0.574997 | 5.3:-77833104 | None:intergenic |
| TGCCAGCTGATGGCTGTTGA+GGG | 0.575376 | 5.3:-77832599 | None:intergenic |
| GGACAGGGGAGGGGAGCAAG+AGG | 0.576708 | 5.3:+77827291 | MS.gene38269:CDS |
| TATATAACCTTGCCCCTCAA+GGG | 0.576839 | 5.3:+77833141 | MS.gene38269:CDS |
| CTGACAGCACCGCCAACACC+AGG | 0.577823 | 5.3:-77828717 | None:intergenic |
| ATGCAGCACCCCAAGCCTCA+AGG | 0.578939 | 5.3:+77827907 | MS.gene38269:CDS |
| AGCGTGCCATTGCCCGAACA+CGG | 0.582012 | 5.3:+77831069 | MS.gene38269:CDS |
| CATCCGAGAATGATAAGTCC+GGG | 0.582263 | 5.3:+77828823 | MS.gene38269:CDS |
| AGATCAAAACAACGTGGACA+GGG | 0.589207 | 5.3:+77827276 | MS.gene38269:CDS |
| GGAGGTATTGTTAACTCCCG+AGG | 0.592527 | 5.3:+77831200 | MS.gene38269:CDS |
| GGTGAAGTTACTGTCTGCCC+TGG | 0.598871 | 5.3:-77833224 | None:intergenic |
| AAAGAGACACTAGCTTCTGA+AGG | 0.599821 | 5.3:+77831132 | MS.gene38269:CDS |
| AAGAAGTTAGCTGGGTATGG+TGG | 0.600041 | 5.3:-77832507 | None:intergenic |
| TTTCCCGGTATCTATCAACC+AGG | 0.601306 | 5.3:+77833206 | MS.gene38269:CDS |
| AACGGAGAAGATTTCGTCGT+CGG | 0.601528 | 5.3:-77825162 | None:intergenic |
| AAACCATTTCCAAGTGCCTG+AGG | 0.602183 | 5.3:+77829549 | MS.gene38269:CDS |
| AATTACAACCTTGAGGCTTG+GGG | 0.602227 | 5.3:-77827915 | None:intergenic |
| TGCCCTGGTTGATAGATACC+GGG | 0.602438 | 5.3:-77833209 | None:intergenic |
| AGATACATGTTGCCAGCTGA+TGG | 0.604442 | 5.3:-77832609 | None:intergenic |
| TGCGTTAGCCAACCACCTCA+AGG | 0.605206 | 5.3:+77828957 | MS.gene38269:CDS |
| TCCAATGGGAAGTCTGGTCA+CGG | 0.605345 | 5.3:+77828435 | MS.gene38269:CDS |
| CATATGGGAAGAAGTTAGCT+GGG | 0.606074 | 5.3:-77832515 | None:intergenic |
| TTTGAACAGTCAGAATTGGA+TGG | 0.606885 | 5.3:-77831224 | None:intergenic |
| CATCTCTTGCTAGATGGTGG+TGG | 0.607034 | 5.3:+77827783 | MS.gene38269:intron |
| GATTGAGCAGCCAAAGCAGG+AGG | 0.610604 | 5.3:+77831182 | MS.gene38269:CDS |
| ACCGTGACCAGACTTCCCAT+TGG | 0.611137 | 5.3:-77828436 | None:intergenic |
| CTGTGCAGTCAACTGAGTTG+AGG | 0.612178 | 5.3:+77829509 | MS.gene38269:CDS |
| GAAGACGATGAGAGTTGCAA+GGG | 0.616553 | 5.3:-77828918 | None:intergenic |
| TGAAGACGATGAGAGTTGCA+AGG | 0.618276 | 5.3:-77828919 | None:intergenic |
| GGTGAGATGTTGCCCTTGAG+GGG | 0.619566 | 5.3:-77833153 | None:intergenic |
| CATTGGAGACAGGTAAATTG+GGG | 0.621229 | 5.3:-77832550 | None:intergenic |
| GTGCCTGAGGCTTTAAAAGG+TGG | 0.624955 | 5.3:+77829562 | MS.gene38269:CDS |
| GATGGAGGAACTTACAACAA+AGG | 0.635043 | 5.3:-77831352 | None:intergenic |
| TGTTGGCGGTGCTGTCAGTA+GGG | 0.639667 | 5.3:+77828722 | MS.gene38269:CDS |
| GGAGTGACCGGATATCTGCT+GGG | 0.642640 | 5.3:+77828751 | MS.gene38269:CDS |
| CACTGAAGAAGATTCAGGAG+TGG | 0.642648 | 5.3:-77829665 | None:intergenic |
| GAGCTTCCAGTATTCACGGT+CGG | 0.642719 | 5.3:-77832768 | None:intergenic |
| ACAGGTATAGAGCTCTGTAG+AGG | 0.643476 | 5.3:-77832456 | None:intergenic |
| GCTGCAAGAACAACAGCTTG+AGG | 0.648149 | 5.3:-77828549 | None:intergenic |
| CACGACATCAGAGAGATCAC+CGG | 0.648780 | 5.3:+77825128 | MS.gene38269:CDS |
| ACAACAAAGGAAGGGAAGTG+TGG | 0.650206 | 5.3:-77831339 | None:intergenic |
| CTAGGAGCATATCCAACAGG+TGG | 0.652618 | 5.3:-77832744 | None:intergenic |
| GAGGAACCTTCCTATTCGAA+GGG | 0.652976 | 5.3:+77827812 | MS.gene38269:CDS |
| AACTTGCTGAGTCCCTAACA+TGG | 0.655137 | 5.3:-77831280 | None:intergenic |
| TGCCAGCACAGGATCTGAAG+AGG | 0.656250 | 5.3:-77828676 | None:intergenic |
| GCTGTGTGGATACATGCACC+AGG | 0.661823 | 5.3:+77833086 | MS.gene38269:CDS |
| TCTGAAGAGGAACAAACACC+CGG | 0.663195 | 5.3:-77828663 | None:intergenic |
| ATTGTAGGGATTGAGCAGCA+GGG | 0.668215 | 5.3:+77827239 | MS.gene38269:intron |
| TTCCAATTGATCTGAGAAGG+CGG | 0.672381 | 5.3:-77833329 | None:intergenic |
| ACCCGCCACCACCACCACCG+CGG | 0.677659 | 5.3:-77825067 | None:intergenic |
| TTGGAGACAGGTAAATTGGG+GGG | 0.679905 | 5.3:-77832548 | None:intergenic |
| TCTCTCTCTGAAAGAATGAG+CGG | 0.679913 | 5.3:+77825041 | None:intergenic |
| GAGGTATTGTTAACTCCCGA+GGG | 0.680947 | 5.3:+77831201 | MS.gene38269:CDS |
| GATTGATTTGCAGCACTACG+GGG | 0.681379 | 5.3:-77828414 | None:intergenic |
| TCAATTACAAGAACTGACCA+AGG | 0.681707 | 5.3:+77828600 | MS.gene38269:CDS |
| GATCAAAACAACGTGGACAG+GGG | 0.696924 | 5.3:+77827277 | MS.gene38269:CDS |
| AGGAACTTACAACAAAGGAA+GGG | 0.699468 | 5.3:-77831347 | None:intergenic |
| CTCTCTGAAAGAATGAGCGG+CGG | 0.701991 | 5.3:+77825044 | None:intergenic |
| CAACATGTATCTACCAGCCG+CGG | 0.706772 | 5.3:+77832620 | MS.gene38269:CDS |
| TTCCCGGTATCTATCAACCA+GGG | 0.707077 | 5.3:+77833207 | MS.gene38269:CDS |
| AGAGTGAAGGCTCTGCTGTG+TGG | 0.711840 | 5.3:+77833072 | MS.gene38269:intron |
| AGCTGCTGATAAGATCCTGG+AGG | 0.720533 | 5.3:-77833305 | None:intergenic |
| ATTGGAGACAGGTAAATTGG+GGG | 0.735261 | 5.3:-77832549 | None:intergenic |
| TAAAACAGCCAATGTCACAG+AGG | 0.735538 | 5.3:+77829468 | MS.gene38269:CDS |
| GCTGTTGAGGGAAACCATTG+TGG | 0.747524 | 5.3:-77832587 | None:intergenic |
| GGAGTGATATATGATCCCGA+AGG | 0.756582 | 5.3:-77832723 | None:intergenic |
| GAGTCTAGATCAAAACAACG+TGG | 0.798909 | 5.3:+77827270 | MS.gene38269:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 77825056 | 77833364 | 77825056 | ID=MS.gene38269 |
| chr5.3 | mRNA | 77825056 | 77833364 | 77825056 | ID=MS.gene38269.t1;Parent=MS.gene38269 |
| chr5.3 | exon | 77825056 | 77825239 | 77825056 | ID=MS.gene38269.t1.exon1;Parent=MS.gene38269.t1 |
| chr5.3 | CDS | 77825056 | 77825239 | 77825056 | ID=cds.MS.gene38269.t1;Parent=MS.gene38269.t1 |
| chr5.3 | exon | 77826612 | 77826655 | 77826612 | ID=MS.gene38269.t1.exon2;Parent=MS.gene38269.t1 |
| chr5.3 | CDS | 77826612 | 77826655 | 77826612 | ID=cds.MS.gene38269.t1;Parent=MS.gene38269.t1 |
| chr5.3 | exon | 77827246 | 77827345 | 77827246 | ID=MS.gene38269.t1.exon3;Parent=MS.gene38269.t1 |
| chr5.3 | CDS | 77827246 | 77827345 | 77827246 | ID=cds.MS.gene38269.t1;Parent=MS.gene38269.t1 |
| chr5.3 | exon | 77827796 | 77827928 | 77827796 | ID=MS.gene38269.t1.exon4;Parent=MS.gene38269.t1 |
| chr5.3 | CDS | 77827796 | 77827928 | 77827796 | ID=cds.MS.gene38269.t1;Parent=MS.gene38269.t1 |
| chr5.3 | exon | 77828398 | 77828978 | 77828398 | ID=MS.gene38269.t1.exon5;Parent=MS.gene38269.t1 |
| chr5.3 | CDS | 77828398 | 77828978 | 77828398 | ID=cds.MS.gene38269.t1;Parent=MS.gene38269.t1 |
| chr5.3 | exon | 77829461 | 77829710 | 77829461 | ID=MS.gene38269.t1.exon6;Parent=MS.gene38269.t1 |
| chr5.3 | CDS | 77829461 | 77829710 | 77829461 | ID=cds.MS.gene38269.t1;Parent=MS.gene38269.t1 |
| chr5.3 | exon | 77831062 | 77831359 | 77831062 | ID=MS.gene38269.t1.exon7;Parent=MS.gene38269.t1 |
| chr5.3 | CDS | 77831062 | 77831359 | 77831062 | ID=cds.MS.gene38269.t1;Parent=MS.gene38269.t1 |
| chr5.3 | exon | 77832417 | 77832857 | 77832417 | ID=MS.gene38269.t1.exon8;Parent=MS.gene38269.t1 |
| chr5.3 | CDS | 77832417 | 77832857 | 77832417 | ID=cds.MS.gene38269.t1;Parent=MS.gene38269.t1 |
| chr5.3 | exon | 77833074 | 77833364 | 77833074 | ID=MS.gene38269.t1.exon9;Parent=MS.gene38269.t1 |
| chr5.3 | CDS | 77833074 | 77833364 | 77833074 | ID=cds.MS.gene38269.t1;Parent=MS.gene38269.t1 |
| Gene Sequence |
| Protein sequence |
