Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38368.t1 | XP_003603080.1 | 94.9 | 471 | 21 | 3 | 1 | 470 | 1 | 469 | 4.30E-252 | 880.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38368.t1 | G7J6Y7 | 94.9 | 471 | 21 | 3 | 1 | 470 | 1 | 469 | 3.1e-252 | 880.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene38368 | 0.808884 | 2.49E-50 | -1.69E-46 |
| MS.gene04919 | MS.gene38368 | 0.83095 | 2.20E-55 | -1.69E-46 |
| MS.gene04920 | MS.gene38368 | 0.830541 | 2.77E-55 | -1.69E-46 |
| MS.gene049283 | MS.gene38368 | 0.840821 | 6.90E-58 | -1.69E-46 |
| MS.gene049499 | MS.gene38368 | 0.802616 | 5.15E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene38368 | 0.810455 | 1.14E-50 | -1.69E-46 |
| MS.gene04998 | MS.gene38368 | 0.807789 | 4.26E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene38368 | 0.838628 | 2.57E-57 | -1.69E-46 |
| MS.gene050945 | MS.gene38368 | 0.803373 | 3.60E-49 | -1.69E-46 |
| MS.gene051043 | MS.gene38368 | 0.817342 | 3.47E-52 | -1.69E-46 |
| MS.gene051154 | MS.gene38368 | 0.803693 | 3.09E-49 | -1.69E-46 |
| MS.gene051226 | MS.gene38368 | 0.812783 | 3.56E-51 | -1.69E-46 |
| MS.gene051699 | MS.gene38368 | 0.804114 | 2.52E-49 | -1.69E-46 |
| MS.gene051959 | MS.gene38368 | 0.854686 | 1.04E-61 | -1.69E-46 |
| MS.gene051960 | MS.gene38368 | 0.857055 | 2.12E-62 | -1.69E-46 |
| MS.gene052016 | MS.gene38368 | 0.814798 | 1.28E-51 | -1.69E-46 |
| MS.gene052118 | MS.gene38368 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene052296 | MS.gene38368 | 0.80383 | 2.89E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene38368 | 0.812629 | 3.85E-51 | -1.69E-46 |
| MS.gene053575 | MS.gene38368 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene38368 | 0.819928 | 8.98E-53 | -1.69E-46 |
| MS.gene054178 | MS.gene38368 | 0.810476 | 1.13E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene38368 | 0.867798 | 1.05E-65 | -1.69E-46 |
| MS.gene054893 | MS.gene38368 | 0.86788 | 9.88E-66 | -1.69E-46 |
| MS.gene054957 | MS.gene38368 | 0.806858 | 6.71E-50 | -1.69E-46 |
| MS.gene055150 | MS.gene38368 | 0.829433 | 5.16E-55 | -1.69E-46 |
| MS.gene05624 | MS.gene38368 | 0.820502 | 6.63E-53 | -1.69E-46 |
| MS.gene056677 | MS.gene38368 | 0.803553 | 3.30E-49 | -1.69E-46 |
| MS.gene057001 | MS.gene38368 | 0.804959 | 1.68E-49 | -1.69E-46 |
| MS.gene057093 | MS.gene38368 | 0.835126 | 2.01E-56 | -1.69E-46 |
| MS.gene057174 | MS.gene38368 | 0.816261 | 6.06E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene38368 | 0.833408 | 5.42E-56 | -1.69E-46 |
| MS.gene058095 | MS.gene38368 | 0.829017 | 6.51E-55 | -1.69E-46 |
| MS.gene058429 | MS.gene38368 | 0.812682 | 3.75E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene38368 | 0.829217 | 5.83E-55 | -1.69E-46 |
| MS.gene05878 | MS.gene38368 | 0.843184 | 1.64E-58 | -1.69E-46 |
| MS.gene05952 | MS.gene38368 | 0.865343 | 6.33E-65 | -1.69E-46 |
| MS.gene05956 | MS.gene38368 | 0.81135 | 7.32E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene38368 | -0.801735 | 7.82E-49 | -1.69E-46 |
| MS.gene06023 | MS.gene38368 | 0.846158 | 2.59E-59 | -1.69E-46 |
| MS.gene060413 | MS.gene38368 | 0.841571 | 4.38E-58 | -1.69E-46 |
| MS.gene060426 | MS.gene38368 | 0.800725 | 1.26E-48 | -1.69E-46 |
| MS.gene060522 | MS.gene38368 | 0.841472 | 4.66E-58 | -1.69E-46 |
| MS.gene060933 | MS.gene38368 | 0.801905 | 7.22E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene38368 | 0.809365 | 1.96E-50 | -1.69E-46 |
| MS.gene060964 | MS.gene38368 | 0.835918 | 1.27E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38368.t1 | MTR_3g102120 | 94.904 | 471 | 21 | 3 | 1 | 470 | 1 | 469 | 0.0 | 888 |
| MS.gene38368.t1 | MTR_1g019040 | 59.660 | 471 | 154 | 11 | 3 | 470 | 7 | 444 | 3.85e-176 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38368.t1 | AT4G06536 | 51.149 | 174 | 57 | 3 | 306 | 464 | 3 | 163 | 2.37e-53 | 177 |
| MS.gene38368.t1 | AT4G06534 | 33.007 | 306 | 156 | 12 | 25 | 309 | 26 | 303 | 1.89e-36 | 139 |
Find 98 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTCGCAGTAATGTTTC+TGG | 0.124831 | 3.2:+84899420 | MS.gene38368:CDS |
| ATTATGGTATTGGTTAATTT+TGG | 0.149979 | 3.2:+84900989 | MS.gene38368:CDS |
| TTGATTCTCATTGGCTTAAT+AGG | 0.191314 | 3.2:+84901146 | MS.gene38368:CDS |
| GGTGATAAGATGAAGCTTAT+TGG | 0.237777 | 3.2:+84899885 | MS.gene38368:CDS |
| AATGGTTCTGTTTATCTTGA+TGG | 0.259478 | 3.2:+84900110 | MS.gene38368:CDS |
| GCTGCTGATGCTATTGAAAA+TGG | 0.279159 | 3.2:+84899489 | MS.gene38368:CDS |
| AGTTATTCAAAATAATTCTA+TGG | 0.287566 | 3.2:+84899719 | MS.gene38368:CDS |
| GTTGAAGAAATGAAGGTTAA+TGG | 0.290085 | 3.2:+84899969 | MS.gene38368:CDS |
| TGGCATGTGATTATGAATTC+TGG | 0.309761 | 3.2:-84899349 | None:intergenic |
| GCTGCACCTGCAGGTGATTA+TGG | 0.313015 | 3.2:+84899594 | MS.gene38368:CDS |
| CCGTTACCTGGTCCTGTTGT+AGG | 0.320947 | 3.2:+84899768 | MS.gene38368:CDS |
| AGCTGCTAATATAGACATTA+TGG | 0.325126 | 3.2:+84900973 | MS.gene38368:CDS |
| TTGTTTGAAATCGTAATAGA+TGG | 0.343448 | 3.2:+84901244 | MS.gene38368:CDS |
| CCCATTGTTGTGGCTTCCTT+TGG | 0.343611 | 3.2:-84901176 | None:intergenic |
| GTGATAAGATGAAGCTTATT+GGG | 0.345352 | 3.2:+84899886 | MS.gene38368:CDS |
| GAACAACAAATTTGTTCAGC+TGG | 0.355141 | 3.2:+84899448 | MS.gene38368:CDS |
| ATAGATTAAAATTAAGACTA+TGG | 0.358611 | 3.2:-84899265 | None:intergenic |
| ATAGGAACTGATAGGGTAAT+TGG | 0.362823 | 3.2:+84900839 | MS.gene38368:CDS |
| TCAAAGAAGGTTACACTGTT+AGG | 0.372240 | 3.2:+84899564 | MS.gene38368:CDS |
| GGTGTTCTTTGAGCATTTGC+TGG | 0.373884 | 3.2:-84901034 | None:intergenic |
| TAATATAGACATTATGGTAT+TGG | 0.375543 | 3.2:+84900979 | MS.gene38368:CDS |
| CTGGATTGAAAATCCATCTA+TGG | 0.380170 | 3.2:+84899467 | MS.gene38368:CDS |
| TACCTTGTTCTAATTGATGA+TGG | 0.384921 | 3.2:-84899377 | None:intergenic |
| CATCTGAAGCAGAGATTAGT+TGG | 0.398628 | 3.2:+84899625 | MS.gene38368:CDS |
| CAGAGTGGATAGGAACTGAT+AGG | 0.399932 | 3.2:+84900831 | MS.gene38368:CDS |
| GCTTATTGGGAAAGGGAATT+CGG | 0.400140 | 3.2:+84899899 | MS.gene38368:CDS |
| TGGGTAGGATTGATTCTCAT+TGG | 0.405419 | 3.2:+84901137 | MS.gene38368:CDS |
| AAGAAAACCTTCTTCTGCCT+TGG | 0.410505 | 3.2:-84900875 | None:intergenic |
| TTTCAAAATATGTTTCTTGT+GGG | 0.419914 | 3.2:-84899803 | None:intergenic |
| ATAGCATCAGCAGCCATAGA+TGG | 0.437052 | 3.2:-84899480 | None:intergenic |
| GAAAGGGAATTCGGAGGCAT+TGG | 0.443470 | 3.2:+84899908 | MS.gene38368:CDS |
| CCAAAGGAAGCCACAACAAT+GGG | 0.444127 | 3.2:+84901176 | MS.gene38368:CDS |
| AAAGTTCCTGGGAGTTATCC+TGG | 0.448473 | 3.2:+84900068 | MS.gene38368:CDS |
| GGGAGTTATCCTGGTAGCAT+TGG | 0.450226 | 3.2:+84900077 | MS.gene38368:CDS |
| ACTGATAGGGTAATTGGTTG+TGG | 0.452337 | 3.2:+84900845 | MS.gene38368:CDS |
| CCAGGAACTTTCAAAACAAC+AGG | 0.459646 | 3.2:-84900056 | None:intergenic |
| AAAACACAGTTTCCTACAAC+AGG | 0.466548 | 3.2:-84899780 | None:intergenic |
| ATTTCAAAATATGTTTCTTG+TGG | 0.471502 | 3.2:-84899804 | None:intergenic |
| CTGGTTCAACGGAATTTCTA+CGG | 0.472523 | 3.2:-84899311 | None:intergenic |
| TCGTTGGGTTTGACAATTGG+TGG | 0.478549 | 3.2:+84900032 | MS.gene38368:CDS |
| AAGGTTAATGGCAGAGAGAA+TGG | 0.486017 | 3.2:+84899981 | MS.gene38368:CDS |
| AGAACAGCTTTGCCGTTACC+TGG | 0.487570 | 3.2:+84899756 | MS.gene38368:CDS |
| GCTATCATCGTCGTAACCTA+TGG | 0.495429 | 3.2:-84901098 | None:intergenic |
| GAGTGCTAAATTCTTCTGTC+TGG | 0.500649 | 3.2:-84900934 | None:intergenic |
| GGATCATGTGCTGCACCTGC+AGG | 0.500904 | 3.2:+84899585 | MS.gene38368:CDS |
| GGTGATACAAGGCATGGATT+TGG | 0.501565 | 3.2:-84901055 | None:intergenic |
| AGATGAAGCTTATTGGGAAA+GGG | 0.502001 | 3.2:+84899892 | MS.gene38368:CDS |
| CAGAAAGTTAGATTAAATCC+TGG | 0.504257 | 3.2:+84899678 | MS.gene38368:CDS |
| ATTTGATCCAAGGCAGAAGA+AGG | 0.506798 | 3.2:+84900868 | MS.gene38368:CDS |
| TAGCAAAGAATTATTCTCCA+TGG | 0.508073 | 3.2:+84901117 | MS.gene38368:CDS |
| AAATATTGTTCCCATTGTTG+TGG | 0.510766 | 3.2:-84901186 | None:intergenic |
| AAATTCATCGCCACGCGAAG+AGG | 0.511644 | 3.2:-84899838 | None:intergenic |
| TCTATATTAGCAGCTAATGT+TGG | 0.513484 | 3.2:-84900965 | None:intergenic |
| GTAAGTTCTCCTGCTGCCAT+AGG | 0.513610 | 3.2:+84901082 | MS.gene38368:CDS |
| AAGATGAAGCTTATTGGGAA+AGG | 0.523093 | 3.2:+84899891 | MS.gene38368:CDS |
| GAATAGTGTTGAAGAAATGA+AGG | 0.524243 | 3.2:+84899962 | MS.gene38368:CDS |
| GAAAGCTATGATGTTGTACT+TGG | 0.528509 | 3.2:-84901280 | None:intergenic |
| ATCTGAAGCAGAGATTAGTT+GGG | 0.538447 | 3.2:+84899626 | MS.gene38368:CDS |
| ACCTTCTTTGATGATGATGA+TGG | 0.540282 | 3.2:-84899552 | None:intergenic |
| TCGTCGTAACCTATGGCAGC+AGG | 0.540303 | 3.2:-84901091 | None:intergenic |
| GCGTGGCGATGAATTTGAAT+CGG | 0.540540 | 3.2:+84899845 | MS.gene38368:CDS |
| GCCATCATCATCATCAAAGA+AGG | 0.543452 | 3.2:+84899551 | MS.gene38368:CDS |
| AAGAATTATTCTCCATGGGT+AGG | 0.547654 | 3.2:+84901122 | MS.gene38368:CDS |
| TCTCTTCCATAATCACCTGC+AGG | 0.552219 | 3.2:-84899600 | None:intergenic |
| GCAGCTAATGTTGGATACAA+TGG | 0.556127 | 3.2:-84900956 | None:intergenic |
| TTGGTTGTGGATTTGATCCA+AGG | 0.557657 | 3.2:+84900858 | MS.gene38368:CDS |
| TTAATGGCAGAGAGAATGGT+GGG | 0.559463 | 3.2:+84899985 | MS.gene38368:CDS |
| GAGTTAAAACCAATGCTACC+AGG | 0.563405 | 3.2:-84900086 | None:intergenic |
| AACTTACAAGTGGTGATACA+AGG | 0.564357 | 3.2:-84901066 | None:intergenic |
| TCGGTAAGAAAGAGTGTGGA+AGG | 0.566648 | 3.2:+84899864 | MS.gene38368:CDS |
| AGACTCTTCATCAAAATCCA+TGG | 0.570947 | 3.2:-84901212 | None:intergenic |
| TCTGAGAAGGCAGAGTGGAT+AGG | 0.571845 | 3.2:+84900821 | MS.gene38368:CDS |
| TCTAATTGATGATGGACACT+TGG | 0.579397 | 3.2:-84899369 | None:intergenic |
| CAGTTTCCTACAACAGGACC+AGG | 0.580501 | 3.2:-84899774 | None:intergenic |
| TGGGAACAATATTTCAACCA+TGG | 0.581189 | 3.2:+84901195 | MS.gene38368:CDS |
| AGCAAAGAATTATTCTCCAT+GGG | 0.584762 | 3.2:+84901118 | MS.gene38368:CDS |
| TGAATCGGTAAGAAAGAGTG+TGG | 0.595163 | 3.2:+84899860 | MS.gene38368:CDS |
| ATGAGAATCAATCCTACCCA+TGG | 0.595354 | 3.2:-84901134 | None:intergenic |
| GCATTGGTTCATGTTACAAG+TGG | 0.596254 | 3.2:+84899924 | MS.gene38368:CDS |
| ACTTGTATTCGAATCTGAGA+AGG | 0.604378 | 3.2:+84900808 | MS.gene38368:CDS |
| ACCAAAGGAAGCCACAACAA+TGG | 0.609473 | 3.2:+84901175 | MS.gene38368:CDS |
| ACGATATTGTCCTCTTCGCG+TGG | 0.610683 | 3.2:+84899828 | MS.gene38368:CDS |
| AGAGTGGATAGGAACTGATA+GGG | 0.611827 | 3.2:+84900832 | MS.gene38368:CDS |
| CTGATGCTATTGAAAATGGA+TGG | 0.614301 | 3.2:+84899493 | MS.gene38368:CDS |
| CATTGGTTCATGTTACAAGT+GGG | 0.614555 | 3.2:+84899925 | MS.gene38368:CDS |
| CTTAATAGGACTACAACCAA+AGG | 0.619022 | 3.2:+84901160 | MS.gene38368:CDS |
| GCAGTTATAGCATCCACCGT+TGG | 0.622512 | 3.2:+84899231 | MS.gene38368:CDS |
| CCTACAACAGGACCAGGTAA+CGG | 0.635042 | 3.2:-84899768 | None:intergenic |
| GTTAATGGCAGAGAGAATGG+TGG | 0.637402 | 3.2:+84899984 | MS.gene38368:CDS |
| ATGCTACCAGGATAACTCCC+AGG | 0.638101 | 3.2:-84900074 | None:intergenic |
| ACAAGTGGTGATACAAGGCA+TGG | 0.642676 | 3.2:-84901061 | None:intergenic |
| ATTAGTTGGGAAGTTTCACG+TGG | 0.655561 | 3.2:+84899639 | MS.gene38368:CDS |
| TATGGTTGAAACGCATCCAA+CGG | 0.657083 | 3.2:-84899247 | None:intergenic |
| GGTTGAAACGCATCCAACGG+TGG | 0.657592 | 3.2:-84899244 | None:intergenic |
| GTCCATCATCAATTAGAACA+AGG | 0.661327 | 3.2:+84899375 | MS.gene38368:CDS |
| TATTGGGAAAGGGAATTCGG+AGG | 0.666017 | 3.2:+84899902 | MS.gene38368:CDS |
| TCGAATCTGAGAAGGCAGAG+TGG | 0.699575 | 3.2:+84900816 | MS.gene38368:CDS |
| GCAGCAGGAGAACTTACAAG+TGG | 0.699695 | 3.2:-84901076 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATTCAAAATAATTCTA+TGG | + | chr3.2:84899719-84899738 | MS.gene38368:CDS | 15.0% |
| !! | ATAGATTAAAATTAAGACTA+TGG | - | chr3.2:84899268-84899287 | None:intergenic | 15.0% |
| !!! | CTTATTTTCAAAAATTCTTT+AGG | + | chr3.2:84900344-84900363 | MS.gene38368:intron | 15.0% |
| !! | AAAAATATTGAAATGACCTT+AGG | - | chr3.2:84900428-84900447 | None:intergenic | 20.0% |
| !! | AGAACTTATAAGTATAGTAT+AGG | + | chr3.2:84900271-84900290 | MS.gene38368:intron | 20.0% |
| !! | ATTTCAAAATATGTTTCTTG+TGG | - | chr3.2:84899807-84899826 | None:intergenic | 20.0% |
| !! | TAATATAGACATTATGGTAT+TGG | + | chr3.2:84900979-84900998 | MS.gene38368:CDS | 20.0% |
| !! | TTTCAAAATATGTTTCTTGT+GGG | - | chr3.2:84899806-84899825 | None:intergenic | 20.0% |
| !!! | ATTATGGTATTGGTTAATTT+TGG | + | chr3.2:84900989-84901008 | MS.gene38368:CDS | 20.0% |
| !!! | TAAGGTCATTTCAATATTTT+TGG | + | chr3.2:84900427-84900446 | MS.gene38368:intron | 20.0% |
| ! | ATGTCATAACTAATAACATG+AGG | - | chr3.2:84900304-84900323 | None:intergenic | 25.0% |
| ! | CTTGAAAAACAATAAACTCA+AGG | - | chr3.2:84900154-84900173 | None:intergenic | 25.0% |
| !! | TGATTAGATTTTCTTAATCC+AGG | - | chr3.2:84899699-84899718 | None:intergenic | 25.0% |
| !! | TTGTTTGAAATCGTAATAGA+TGG | + | chr3.2:84901244-84901263 | MS.gene38368:CDS | 25.0% |
| !!! | TAATTTTAATCTATCGTCGT+TGG | + | chr3.2:84899274-84899293 | MS.gene38368:CDS | 25.0% |
| AAATATTGTTCCCATTGTTG+TGG | - | chr3.2:84901189-84901208 | None:intergenic | 30.0% | |
| AGATATCTAAGTGTGATACT+TGG | + | chr3.2:84900772-84900791 | MS.gene38368:intron | 30.0% | |
| AGCAAAGAATTATTCTCCAT+GGG | + | chr3.2:84901118-84901137 | MS.gene38368:CDS | 30.0% | |
| AGCTGCTAATATAGACATTA+TGG | + | chr3.2:84900973-84900992 | MS.gene38368:CDS | 30.0% | |
| CAGAAAGTTAGATTAAATCC+TGG | + | chr3.2:84899678-84899697 | MS.gene38368:CDS | 30.0% | |
| GTGATAAGATGAAGCTTATT+GGG | + | chr3.2:84899886-84899905 | MS.gene38368:CDS | 30.0% | |
| GTTGAAGAAATGAAGGTTAA+TGG | + | chr3.2:84899969-84899988 | MS.gene38368:CDS | 30.0% | |
| TACCTTGTTCTAATTGATGA+TGG | - | chr3.2:84899380-84899399 | None:intergenic | 30.0% | |
| TAGCAAAGAATTATTCTCCA+TGG | + | chr3.2:84901117-84901136 | MS.gene38368:CDS | 30.0% | |
| TCTATATTAGCAGCTAATGT+TGG | - | chr3.2:84900968-84900987 | None:intergenic | 30.0% | |
| TTTACCTACAAAGTACAACA+TGG | + | chr3.2:84900724-84900743 | MS.gene38368:intron | 30.0% | |
| ! | AATGGTTCTGTTTATCTTGA+TGG | + | chr3.2:84900110-84900129 | MS.gene38368:CDS | 30.0% |
| ! | GAATAGTGTTGAAGAAATGA+AGG | + | chr3.2:84899962-84899981 | MS.gene38368:CDS | 30.0% |
| ! | GATGATATTTTGTCTTGAAG+TGG | - | chr3.2:84900528-84900547 | None:intergenic | 30.0% |
| ! | GATTCTGTTATGTTTTCGTT+GGG | + | chr3.2:84900017-84900036 | MS.gene38368:CDS | 30.0% |
| ! | TGATTCTGTTATGTTTTCGT+TGG | + | chr3.2:84900016-84900035 | MS.gene38368:CDS | 30.0% |
| !! | GTTTAGATTTTGTAGTCTTG+TGG | + | chr3.2:84900449-84900468 | MS.gene38368:intron | 30.0% |
| !! | TTGATTCTCATTGGCTTAAT+AGG | + | chr3.2:84901146-84901165 | MS.gene38368:CDS | 30.0% |
| !!! | AGCATTGGTTTTAACTCAAA+TGG | + | chr3.2:84900092-84900111 | MS.gene38368:CDS | 30.0% |
| AAAACACAGTTTCCTACAAC+AGG | - | chr3.2:84899783-84899802 | None:intergenic | 35.0% | |
| AACTTACAAGTGGTGATACA+AGG | - | chr3.2:84901069-84901088 | None:intergenic | 35.0% | |
| AAGAATTATTCTCCATGGGT+AGG | + | chr3.2:84901122-84901141 | MS.gene38368:CDS | 35.0% | |
| AAGATGAAGCTTATTGGGAA+AGG | + | chr3.2:84899891-84899910 | MS.gene38368:CDS | 35.0% | |
| ACTTGTATTCGAATCTGAGA+AGG | + | chr3.2:84900808-84900827 | MS.gene38368:CDS | 35.0% | |
| AGACTCTTCATCAAAATCCA+TGG | - | chr3.2:84901215-84901234 | None:intergenic | 35.0% | |
| AGATGAAGCTTATTGGGAAA+GGG | + | chr3.2:84899892-84899911 | MS.gene38368:CDS | 35.0% | |
| ATAGGAACTGATAGGGTAAT+TGG | + | chr3.2:84900839-84900858 | MS.gene38368:CDS | 35.0% | |
| CAAACCATGTTGTACTTTGT+AGG | - | chr3.2:84900731-84900750 | None:intergenic | 35.0% | |
| CTGATGCTATTGAAAATGGA+TGG | + | chr3.2:84899493-84899512 | MS.gene38368:CDS | 35.0% | |
| CTGGATTGAAAATCCATCTA+TGG | + | chr3.2:84899467-84899486 | MS.gene38368:CDS | 35.0% | |
| CTTAATAGGACTACAACCAA+AGG | + | chr3.2:84901160-84901179 | MS.gene38368:CDS | 35.0% | |
| GGTGATAAGATGAAGCTTAT+TGG | + | chr3.2:84899885-84899904 | MS.gene38368:CDS | 35.0% | |
| GTCCATCATCAATTAGAACA+AGG | + | chr3.2:84899375-84899394 | MS.gene38368:CDS | 35.0% | |
| TAAGTGTGATACTTGGTTAC+AGG | + | chr3.2:84900779-84900798 | MS.gene38368:intron | 35.0% | |
| TCAAAGAAGGTTACACTGTT+AGG | + | chr3.2:84899564-84899583 | MS.gene38368:CDS | 35.0% | |
| TGGCATGTGATTATGAATTC+TGG | - | chr3.2:84899352-84899371 | None:intergenic | 35.0% | |
| TGGGAACAATATTTCAACCA+TGG | + | chr3.2:84901195-84901214 | MS.gene38368:CDS | 35.0% | |
| TTGTGAATCTGTCAGTTTCA+CGG | - | chr3.2:84900484-84900503 | None:intergenic | 35.0% | |
| ! | ATCTGAAGCAGAGATTAGTT+GGG | + | chr3.2:84899626-84899645 | MS.gene38368:CDS | 35.0% |
| ! | CTGTTTATCTTGATGGTAAG+TGG | + | chr3.2:84900117-84900136 | MS.gene38368:intron | 35.0% |
| ! | GAACAACAAATTTGTTCAGC+TGG | + | chr3.2:84899448-84899467 | MS.gene38368:CDS | 35.0% |
| ! | TTTTCGTTGGGTTTGACAAT+TGG | + | chr3.2:84900029-84900048 | MS.gene38368:CDS | 35.0% |
| !! | ACCTTCTTTGATGATGATGA+TGG | - | chr3.2:84899555-84899574 | None:intergenic | 35.0% |
| !! | CATTGGTTCATGTTACAAGT+GGG | + | chr3.2:84899925-84899944 | MS.gene38368:CDS | 35.0% |
| !! | TCTAATTGATGATGGACACT+TGG | - | chr3.2:84899372-84899391 | None:intergenic | 35.0% |
| !!! | AGAATTTTCTGCTGGTTCAA+CGG | - | chr3.2:84899325-84899344 | None:intergenic | 35.0% |
| !!! | CTGTTGTTTTGAAAGTTCCT+GGG | + | chr3.2:84900057-84900076 | MS.gene38368:CDS | 35.0% |
| !!! | GATTTTGTAGTCTTGTGGAT+AGG | + | chr3.2:84900454-84900473 | MS.gene38368:intron | 35.0% |
| AAGAAAACCTTCTTCTGCCT+TGG | - | chr3.2:84900878-84900897 | None:intergenic | 40.0% | |
| AAGGTTAATGGCAGAGAGAA+TGG | + | chr3.2:84899981-84900000 | MS.gene38368:CDS | 40.0% | |
| ACTGATAGGGTAATTGGTTG+TGG | + | chr3.2:84900845-84900864 | MS.gene38368:CDS | 40.0% | |
| AGAGTGGATAGGAACTGATA+GGG | + | chr3.2:84900832-84900851 | MS.gene38368:CDS | 40.0% | |
| ATGAGAATCAATCCTACCCA+TGG | - | chr3.2:84901137-84901156 | None:intergenic | 40.0% | |
| ATGAGTATGACATGACCATG+TGG | - | chr3.2:84900612-84900631 | None:intergenic | 40.0% | |
| ATTAGTTGGGAAGTTTCACG+TGG | + | chr3.2:84899639-84899658 | MS.gene38368:CDS | 40.0% | |
| ATTTGATCCAAGGCAGAAGA+AGG | + | chr3.2:84900868-84900887 | MS.gene38368:CDS | 40.0% | |
| CCAGGAACTTTCAAAACAAC+AGG | - | chr3.2:84900059-84900078 | None:intergenic | 40.0% | |
| CTGGTTCAACGGAATTTCTA+CGG | - | chr3.2:84899314-84899333 | None:intergenic | 40.0% | |
| CTGTTTCGCAGTAATGTTTC+TGG | + | chr3.2:84899420-84899439 | MS.gene38368:CDS | 40.0% | |
| GAGTGCTAAATTCTTCTGTC+TGG | - | chr3.2:84900937-84900956 | None:intergenic | 40.0% | |
| GAGTTAAAACCAATGCTACC+AGG | - | chr3.2:84900089-84900108 | None:intergenic | 40.0% | |
| GCAGCTAATGTTGGATACAA+TGG | - | chr3.2:84900959-84900978 | None:intergenic | 40.0% | |
| GCCATCATCATCATCAAAGA+AGG | + | chr3.2:84899551-84899570 | MS.gene38368:CDS | 40.0% | |
| GCTGCTGATGCTATTGAAAA+TGG | + | chr3.2:84899489-84899508 | MS.gene38368:CDS | 40.0% | |
| GCTTATACAATCAGAGCCTA+AGG | + | chr3.2:84900409-84900428 | MS.gene38368:intron | 40.0% | |
| GCTTATTGGGAAAGGGAATT+CGG | + | chr3.2:84899899-84899918 | MS.gene38368:CDS | 40.0% | |
| GGCTGTGAAACATTTCATGT+GGG | - | chr3.2:84900579-84900598 | None:intergenic | 40.0% | |
| GTAAACTTGTGCGATCGTTT+GGG | + | chr3.2:84900248-84900267 | MS.gene38368:intron | 40.0% | |
| GTCTTGAAGTGGAAGCAAAA+AGG | - | chr3.2:84900517-84900536 | None:intergenic | 40.0% | |
| TATGGTTGAAACGCATCCAA+CGG | - | chr3.2:84899250-84899269 | None:intergenic | 40.0% | |
| TGAATCGGTAAGAAAGAGTG+TGG | + | chr3.2:84899860-84899879 | MS.gene38368:CDS | 40.0% | |
| TGTGAATCTGTCAGTTTCAC+GGG | - | chr3.2:84900483-84900502 | None:intergenic | 40.0% | |
| TTAATGGCAGAGAGAATGGT+GGG | + | chr3.2:84899985-84900004 | MS.gene38368:CDS | 40.0% | |
| TTGGTTGTGGATTTGATCCA+AGG | + | chr3.2:84900858-84900877 | MS.gene38368:CDS | 40.0% | |
| ! | CATCTGAAGCAGAGATTAGT+TGG | + | chr3.2:84899625-84899644 | MS.gene38368:CDS | 40.0% |
| ! | TGGGTAGGATTGATTCTCAT+TGG | + | chr3.2:84901137-84901156 | MS.gene38368:CDS | 40.0% |
| !! | ATGACCATGTGGTTCTAGTA+TGG | - | chr3.2:84900601-84900620 | None:intergenic | 40.0% |
| !! | GCATTGGTTCATGTTACAAG+TGG | + | chr3.2:84899924-84899943 | MS.gene38368:CDS | 40.0% |
| !! | GGATTTTGATGAAGAGTCTG+AGG | + | chr3.2:84901216-84901235 | MS.gene38368:CDS | 40.0% |
| !! | TGACCATGTGGTTCTAGTAT+GGG | - | chr3.2:84900600-84900619 | None:intergenic | 40.0% |
| !!! | CCTGTTGTTTTGAAAGTTCC+TGG | + | chr3.2:84900056-84900075 | MS.gene38368:CDS | 40.0% |
| !!! | CTGGTTCTAGAATTTTCTGC+TGG | - | chr3.2:84899333-84899352 | None:intergenic | 40.0% |
| AAAGTTCCTGGGAGTTATCC+TGG | + | chr3.2:84900068-84900087 | MS.gene38368:CDS | 45.0% | |
| ACAAGTGGTGATACAAGGCA+TGG | - | chr3.2:84901064-84901083 | None:intergenic | 45.0% | |
| ACCAAAGGAAGCCACAACAA+TGG | + | chr3.2:84901175-84901194 | MS.gene38368:CDS | 45.0% | |
| ATAGCATCAGCAGCCATAGA+TGG | - | chr3.2:84899483-84899502 | None:intergenic | 45.0% | |
| CAGAGTGGATAGGAACTGAT+AGG | + | chr3.2:84900831-84900850 | MS.gene38368:CDS | 45.0% | |
| CCAAAGGAAGCCACAACAAT+GGG | + | chr3.2:84901176-84901195 | MS.gene38368:CDS | 45.0% | |
| CGTAAACTTGTGCGATCGTT+TGG | + | chr3.2:84900247-84900266 | MS.gene38368:intron | 45.0% | |
| GCGTGGCGATGAATTTGAAT+CGG | + | chr3.2:84899845-84899864 | MS.gene38368:CDS | 45.0% | |
| GCTATCATCGTCGTAACCTA+TGG | - | chr3.2:84901101-84901120 | None:intergenic | 45.0% | |
| GGGCTGTGAAACATTTCATG+TGG | - | chr3.2:84900580-84900599 | None:intergenic | 45.0% | |
| GGTGATACAAGGCATGGATT+TGG | - | chr3.2:84901058-84901077 | None:intergenic | 45.0% | |
| GGTGTTCTTTGAGCATTTGC+TGG | - | chr3.2:84901037-84901056 | None:intergenic | 45.0% | |
| GTGAATCTGTCAGTTTCACG+GGG | - | chr3.2:84900482-84900501 | None:intergenic | 45.0% | |
| GTTAATGGCAGAGAGAATGG+TGG | + | chr3.2:84899984-84900003 | MS.gene38368:CDS | 45.0% | |
| TATTGGGAAAGGGAATTCGG+AGG | + | chr3.2:84899902-84899921 | MS.gene38368:CDS | 45.0% | |
| TCGTTGGGTTTGACAATTGG+TGG | + | chr3.2:84900032-84900051 | MS.gene38368:CDS | 45.0% | |
| TCTCTTCCATAATCACCTGC+AGG | - | chr3.2:84899603-84899622 | None:intergenic | 45.0% | |
| ! | TCGGTAAGAAAGAGTGTGGA+AGG | + | chr3.2:84899864-84899883 | MS.gene38368:CDS | 45.0% |
| AAATTCATCGCCACGCGAAG+AGG | - | chr3.2:84899841-84899860 | None:intergenic | 50.0% | |
| ACGATATTGTCCTCTTCGCG+TGG | + | chr3.2:84899828-84899847 | MS.gene38368:CDS | 50.0% | |
| AGAACAGCTTTGCCGTTACC+TGG | + | chr3.2:84899756-84899775 | MS.gene38368:CDS | 50.0% | |
| ATGCTACCAGGATAACTCCC+AGG | - | chr3.2:84900077-84900096 | None:intergenic | 50.0% | |
| CAGCCCATACTAGAACCACA+TGG | + | chr3.2:84900594-84900613 | MS.gene38368:intron | 50.0% | |
| CAGTTTCCTACAACAGGACC+AGG | - | chr3.2:84899777-84899796 | None:intergenic | 50.0% | |
| CCCATTGTTGTGGCTTCCTT+TGG | - | chr3.2:84901179-84901198 | None:intergenic | 50.0% | |
| CCTACAACAGGACCAGGTAA+CGG | - | chr3.2:84899771-84899790 | None:intergenic | 50.0% | |
| GCAGCAGGAGAACTTACAAG+TGG | - | chr3.2:84901079-84901098 | None:intergenic | 50.0% | |
| GCAGTTATAGCATCCACCGT+TGG | + | chr3.2:84899231-84899250 | MS.gene38368:CDS | 50.0% | |
| GGGAGTTATCCTGGTAGCAT+TGG | + | chr3.2:84900077-84900096 | MS.gene38368:CDS | 50.0% | |
| GTAAGTTCTCCTGCTGCCAT+AGG | + | chr3.2:84901082-84901101 | MS.gene38368:CDS | 50.0% | |
| TCGAATCTGAGAAGGCAGAG+TGG | + | chr3.2:84900816-84900835 | MS.gene38368:CDS | 50.0% | |
| TCTGAGAAGGCAGAGTGGAT+AGG | + | chr3.2:84900821-84900840 | MS.gene38368:CDS | 50.0% | |
| ! | GAAAGGGAATTCGGAGGCAT+TGG | + | chr3.2:84899908-84899927 | MS.gene38368:CDS | 50.0% |
| CCGTTACCTGGTCCTGTTGT+AGG | + | chr3.2:84899768-84899787 | MS.gene38368:CDS | 55.0% | |
| GCTGCACCTGCAGGTGATTA+TGG | + | chr3.2:84899594-84899613 | MS.gene38368:CDS | 55.0% | |
| GGTTGAAACGCATCCAACGG+TGG | - | chr3.2:84899247-84899266 | None:intergenic | 55.0% | |
| TCGTCGTAACCTATGGCAGC+AGG | - | chr3.2:84901094-84901113 | None:intergenic | 55.0% | |
| GGATCATGTGCTGCACCTGC+AGG | + | chr3.2:84899585-84899604 | MS.gene38368:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 84899216 | 84901297 | 84899216 | ID=MS.gene38368 |
| chr3.2 | mRNA | 84899216 | 84901297 | 84899216 | ID=MS.gene38368.t1;Parent=MS.gene38368 |
| chr3.2 | exon | 84899216 | 84900131 | 84899216 | ID=MS.gene38368.t1.exon1;Parent=MS.gene38368.t1 |
| chr3.2 | CDS | 84899216 | 84900131 | 84899216 | ID=cds.MS.gene38368.t1;Parent=MS.gene38368.t1 |
| chr3.2 | exon | 84900801 | 84901297 | 84900801 | ID=MS.gene38368.t1.exon2;Parent=MS.gene38368.t1 |
| chr3.2 | CDS | 84900801 | 84901297 | 84900801 | ID=cds.MS.gene38368.t1;Parent=MS.gene38368.t1 |
| Gene Sequence |
| Protein sequence |
