Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38568.t1 | XP_013461687.1 | 98.5 | 133 | 2 | 0 | 1 | 133 | 1 | 133 | 2.50E-64 | 254.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38568.t1 | Q8VXX9 | 67.2 | 128 | 40 | 2 | 7 | 133 | 11 | 137 | 1.4e-42 | 173.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38568.t1 | A0A072V1K5 | 98.5 | 133 | 2 | 0 | 1 | 133 | 1 | 133 | 1.8e-64 | 254.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene38568 | 0.811701 | 6.14E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene38568 | 0.806987 | 6.30E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene38568 | 0.804922 | 1.71E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene38568 | 0.801089 | 1.06E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene38568 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene050752 | MS.gene38568 | 0.814947 | 1.19E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene38568 | 0.806211 | 9.18E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene38568 | 0.827575 | 1.45E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene38568 | 0.839346 | 1.67E-57 | -1.69E-46 |
| MS.gene053045 | MS.gene38568 | 0.809852 | 1.54E-50 | -1.69E-46 |
| MS.gene054222 | MS.gene38568 | 0.80002 | 1.75E-48 | -1.69E-46 |
| MS.gene054403 | MS.gene38568 | 0.817359 | 3.44E-52 | -1.69E-46 |
| MS.gene05469 | MS.gene38568 | 0.830913 | 2.25E-55 | -1.69E-46 |
| MS.gene055311 | MS.gene38568 | 0.806608 | 7.57E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene38568 | 0.815885 | 7.35E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene38568 | 0.813131 | 2.99E-51 | -1.69E-46 |
| MS.gene056390 | MS.gene38568 | 0.804583 | 2.02E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene38568 | 0.835334 | 1.78E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene38568 | 0.828383 | 9.27E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene38568 | 0.822205 | 2.68E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene38568 | 0.809225 | 2.10E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene38568 | 0.814822 | 1.27E-51 | -1.69E-46 |
| MS.gene058355 | MS.gene38568 | 0.800908 | 1.16E-48 | -1.69E-46 |
| MS.gene059227 | MS.gene38568 | 0.808206 | 3.47E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene38568 | -0.819988 | 8.70E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene38568 | 0.803439 | 3.48E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene38568 | 0.800852 | 1.19E-48 | -1.69E-46 |
| MS.gene060365 | MS.gene38568 | 0.804963 | 1.68E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene38568 | 0.804566 | 2.03E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene38568 | 0.814056 | 1.87E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38568.t1 | MTR_3g099773 | 98.496 | 133 | 2 | 0 | 1 | 133 | 1 | 133 | 8.25e-96 | 271 |
| MS.gene38568.t1 | MTR_5g065550 | 75.758 | 132 | 30 | 2 | 2 | 133 | 3 | 132 | 1.11e-70 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38568.t1 | AT4G14600 | 67.188 | 128 | 40 | 2 | 7 | 133 | 11 | 137 | 1.24e-61 | 186 |
| MS.gene38568.t1 | AT1G29060 | 64.662 | 133 | 45 | 2 | 2 | 133 | 3 | 134 | 6.78e-54 | 166 |
| MS.gene38568.t1 | AT1G29060 | 65.556 | 90 | 31 | 0 | 44 | 133 | 4 | 93 | 1.22e-36 | 120 |
Find 31 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGAAAGCCTCACTTTC+TGG | 0.084284 | 3.2:+82841241 | None:intergenic |
| GTTTCACTATTGTGTATCTT+TGG | 0.334276 | 3.2:-82841274 | MS.gene38568:CDS |
| AGGGGCAGCATCGCCGTAAA+AGG | 0.359512 | 3.2:+82843230 | None:intergenic |
| GGAGGACGCAGCAGGAGTTC+TGG | 0.386145 | 3.2:+82843100 | None:intergenic |
| TCAATGTCGAATTCGCTTAG+AGG | 0.394928 | 3.2:-82843258 | MS.gene38568:CDS |
| AAAGGACCACGTGAACAATA+TGG | 0.426700 | 3.2:+82841309 | None:intergenic |
| TTTGTTACCTTGATCGGAAA+GGG | 0.442979 | 3.2:+82843211 | None:intergenic |
| CTGCAGGTTGCTGAAGAGAT+AGG | 0.445511 | 3.2:-82842402 | MS.gene38568:intron |
| ACAGTGGCAAAGGCTCAAGC+TGG | 0.467813 | 3.2:-82841386 | MS.gene38568:CDS |
| AGGGTGTTTGTTACCTTGAT+CGG | 0.467925 | 3.2:+82843205 | None:intergenic |
| GATGAAATTACCGGTCTTCG+TGG | 0.475096 | 3.2:-82843035 | MS.gene38568:CDS |
| GATTTCGATGATGAAATTAC+CGG | 0.478157 | 3.2:-82843044 | MS.gene38568:CDS |
| ATAATCTAAGAAGATTGAAC+AGG | 0.480667 | 3.2:-82841355 | MS.gene38568:CDS |
| AACAGGAGTATCGTGCGAAA+TGG | 0.487568 | 3.2:-82841338 | MS.gene38568:CDS |
| TCGAACTTGACCACGAAGAC+CGG | 0.491165 | 3.2:+82843025 | None:intergenic |
| TCATCATCGAAATCACCAAC+AGG | 0.498984 | 3.2:+82843053 | None:intergenic |
| ATGCTGCCCCTTTCCGATCA+AGG | 0.499268 | 3.2:-82843218 | MS.gene38568:intron |
| AATACGCAATTGAATTTCAT+CGG | 0.502875 | 3.2:+82843079 | None:intergenic |
| ATTTCATCGGAGGACGCAGC+AGG | 0.517383 | 3.2:+82843092 | None:intergenic |
| TGAAACATATTAATGCGAAA+AGG | 0.525274 | 3.2:+82841291 | None:intergenic |
| GTTTGTTACCTTGATCGGAA+AGG | 0.528652 | 3.2:+82843210 | None:intergenic |
| CAGTGGCAAAGGCTCAAGCT+GGG | 0.533913 | 3.2:-82841385 | MS.gene38568:CDS |
| GCAGCAAATGACAGTGGCAA+AGG | 0.571535 | 3.2:-82841396 | MS.gene38568:intron |
| ATGTCGAATTCGCTTAGAGG+TGG | 0.594115 | 3.2:-82843255 | MS.gene38568:CDS |
| CAATTGCGTATTGATCCTGT+TGG | 0.644327 | 3.2:-82843068 | MS.gene38568:CDS |
| TCGAAGATGTCCAGAAAGTG+AGG | 0.651544 | 3.2:-82841251 | None:intergenic |
| AGTGGCAAAGGCTCAAGCTG+GGG | 0.653066 | 3.2:-82841384 | MS.gene38568:CDS |
| TTCAAACCATATTGTTCACG+TGG | 0.657520 | 3.2:-82841315 | MS.gene38568:CDS |
| TTGTTACCTTGATCGGAAAG+GGG | 0.660352 | 3.2:+82843212 | None:intergenic |
| ACGCAATTGAATTTCATCGG+AGG | 0.692132 | 3.2:+82843082 | None:intergenic |
| TTTAATGCAGCAAATGACAG+TGG | 0.697287 | 3.2:-82841402 | MS.gene38568:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAACTTGAAATTATAA+TGG | - | chr3.2:82842424-82842443 | MS.gene38568:intron | 10.0% |
| !! | ATAAAACTTGAAATTATAAT+GGG | - | chr3.2:82842425-82842444 | MS.gene38568:intron | 10.0% |
| !!! | AAAATATTTCTTTTGTAAAA+TGG | + | chr3.2:82842515-82842534 | None:intergenic | 10.0% |
| !!! | TTTAAATTATCATGATTTTT+AGG | - | chr3.2:82841571-82841590 | MS.gene38568:intron | 10.0% |
| !! | TAGAGAAAAAAAAAAAAAGA+GGG | - | chr3.2:82841638-82841657 | MS.gene38568:intron | 15.0% |
| !!! | AACAAACATTTTTTTAATAC+TGG | + | chr3.2:82841825-82841844 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTTATAAGTCAA+AGG | + | chr3.2:82842486-82842505 | None:intergenic | 15.0% |
| !! | AAAAATCTTTGAACCTAATA+TGG | + | chr3.2:82842031-82842050 | None:intergenic | 20.0% |
| !! | CTAGAGAAAAAAAAAAAAAG+AGG | - | chr3.2:82841637-82841656 | MS.gene38568:intron | 20.0% |
| !! | TGGATTATAACATTAATCTA+TGG | - | chr3.2:82842859-82842878 | MS.gene38568:intron | 20.0% |
| !! | TTATCCAATAAATGATGTAT+CGG | + | chr3.2:82842197-82842216 | None:intergenic | 20.0% |
| !!! | AAAACAAAGTATTAAGAAGA+CGG | + | chr3.2:82843079-82843098 | None:intergenic | 20.0% |
| !!! | ACTTTTTTCATTAGTTTGAT+TGG | - | chr3.2:82841726-82841745 | MS.gene38568:intron | 20.0% |
| !!! | GATTTTCTGTTATTTAACTT+GGG | + | chr3.2:82841803-82841822 | None:intergenic | 20.0% |
| !!! | TTACTTTAGGATTATTATCT+TGG | - | chr3.2:82842839-82842858 | MS.gene38568:intron | 20.0% |
| ! | AATACGCAATTGAATTTCAT+CGG | + | chr3.2:82841432-82841451 | None:intergenic | 25.0% |
| ! | ATAATAATCCTAAAGTAACG+AGG | + | chr3.2:82842837-82842856 | None:intergenic | 25.0% |
| ! | ATAATCTAAGAAGATTGAAC+AGG | - | chr3.2:82843153-82843172 | MS.gene38568:intron | 25.0% |
| ! | ATTCATAAACAAGCAAATAC+AGG | + | chr3.2:82841695-82841714 | None:intergenic | 25.0% |
| ! | CTCAATCAGTAACTTAATTA+GGG | - | chr3.2:82842377-82842396 | MS.gene38568:CDS | 25.0% |
| ! | GAAGTGAAGTAATTTATGTT+TGG | + | chr3.2:82842718-82842737 | None:intergenic | 25.0% |
| ! | TAATAGTTTATGATCTCTAG+TGG | - | chr3.2:82842547-82842566 | MS.gene38568:intron | 25.0% |
| ! | TAGTTTGATGAAACCATATT+AGG | - | chr3.2:82842015-82842034 | MS.gene38568:intron | 25.0% |
| ! | TCTCAATCAGTAACTTAATT+AGG | - | chr3.2:82842376-82842395 | MS.gene38568:CDS | 25.0% |
| ! | TGAAACATATTAATGCGAAA+AGG | + | chr3.2:82843220-82843239 | None:intergenic | 25.0% |
| ! | TTTATAGTGTGTGCATAAAT+GGG | + | chr3.2:82841538-82841557 | None:intergenic | 25.0% |
| !! | AAACAAAGTATTAAGAAGAC+GGG | + | chr3.2:82843078-82843097 | None:intergenic | 25.0% |
| !! | TTTTATAGTGTGTGCATAAA+TGG | + | chr3.2:82841539-82841558 | None:intergenic | 25.0% |
| !!! | GGATTTTCTGTTATTTAACT+TGG | + | chr3.2:82841804-82841823 | None:intergenic | 25.0% |
| !!! | TTTTTCATTAGTTTGATTGG+TGG | - | chr3.2:82841729-82841748 | MS.gene38568:intron | 25.0% |
| AAATTCATTCAAATGCAGTG+AGG | - | chr3.2:82841376-82841395 | MS.gene38568:CDS | 30.0% | |
| AATTCATTCAAATGCAGTGA+GGG | - | chr3.2:82841377-82841396 | MS.gene38568:CDS | 30.0% | |
| AGAGAATCAAAAACGAAAAC+GGG | + | chr3.2:82842063-82842082 | None:intergenic | 30.0% | |
| CAGAGAATCAAAAACGAAAA+CGG | + | chr3.2:82842064-82842083 | None:intergenic | 30.0% | |
| CTGTATTCTACTCATACATT+GGG | - | chr3.2:82842218-82842237 | MS.gene38568:intron | 30.0% | |
| GATTTCGATGATGAAATTAC+CGG | - | chr3.2:82841464-82841483 | MS.gene38568:intron | 30.0% | |
| GCTTTATGATATCAGGAAAA+TGG | - | chr3.2:82842280-82842299 | MS.gene38568:intron | 30.0% | |
| GTTACATGCTTTATGATATC+AGG | - | chr3.2:82842273-82842292 | MS.gene38568:intron | 30.0% | |
| GTTTCACTATTGTGTATCTT+TGG | - | chr3.2:82843234-82843253 | MS.gene38568:CDS | 30.0% | |
| TACTAAGACTCTATTACACT+CGG | + | chr3.2:82841943-82841962 | None:intergenic | 30.0% | |
| TTATAGTGTGTGCATAAATG+GGG | + | chr3.2:82841537-82841556 | None:intergenic | 30.0% | |
| ! | AATACAGAGGAAACATGTTT+TGG | - | chr3.2:82842969-82842988 | MS.gene38568:intron | 30.0% |
| ! | ATTGGTTCTTCCTTAACTTT+AGG | - | chr3.2:82842614-82842633 | MS.gene38568:intron | 30.0% |
| ! | CAAGACTCAAAAAGATTTTC+TGG | - | chr3.2:82842138-82842157 | MS.gene38568:intron | 30.0% |
| ! | GAAAAGAGTACATGCATATA+TGG | - | chr3.2:82842251-82842270 | MS.gene38568:intron | 30.0% |
| ! | GTCACTTTCTTATGATGTTT+AGG | - | chr3.2:82842399-82842418 | MS.gene38568:CDS | 30.0% |
| !! | TGGATTCAAGTTTTACATAG+AGG | + | chr3.2:82842574-82842593 | None:intergenic | 30.0% |
| AAGAAATTGAGAGAGAGGAA+GGG | + | chr3.2:82841325-82841344 | None:intergenic | 35.0% | |
| AATCAAAAACGAAAACGGGA+AGG | + | chr3.2:82842059-82842078 | None:intergenic | 35.0% | |
| AATCGAAGAAATTGAGAGAG+AGG | + | chr3.2:82841330-82841349 | None:intergenic | 35.0% | |
| ACCTAACCATCCTAAAGTTA+AGG | + | chr3.2:82842627-82842646 | None:intergenic | 35.0% | |
| CCAATGTATGAGTAGAATAC+AGG | + | chr3.2:82842220-82842239 | None:intergenic | 35.0% | |
| CCTGTATTCTACTCATACAT+TGG | - | chr3.2:82842217-82842236 | MS.gene38568:intron | 35.0% | |
| GCTTCAGAAAATGAATACAG+AGG | - | chr3.2:82842956-82842975 | MS.gene38568:intron | 35.0% | |
| GTTAAGGAAGAACCAATAGA+TGG | + | chr3.2:82842611-82842630 | None:intergenic | 35.0% | |
| TCAGCCGATACATCATTTAT+TGG | - | chr3.2:82842190-82842209 | MS.gene38568:intron | 35.0% | |
| TGTTGTCATTGATCTGTCAT+TGG | - | chr3.2:82843015-82843034 | MS.gene38568:CDS | 35.0% | |
| TTCAAACCATATTGTTCACG+TGG | - | chr3.2:82843193-82843212 | MS.gene38568:intron | 35.0% | |
| TTTAATGCAGCAAATGACAG+TGG | - | chr3.2:82843106-82843125 | MS.gene38568:CDS | 35.0% | |
| TTTGTTACCTTGATCGGAAA+GGG | + | chr3.2:82841300-82841319 | None:intergenic | 35.0% | |
| ! | GTTCTTCCTTAACTTTAGGA+TGG | - | chr3.2:82842618-82842637 | MS.gene38568:intron | 35.0% |
| ! | TAGAAGGCCAAAACTTCTTT+TGG | + | chr3.2:82842805-82842824 | None:intergenic | 35.0% |
| ! | TATGCATGTACTCTTTTCTC+AGG | + | chr3.2:82842249-82842268 | None:intergenic | 35.0% |
| !! | TCCTTAACTTTAGGATGGTT+AGG | - | chr3.2:82842623-82842642 | MS.gene38568:intron | 35.0% |
| !! | TGAAGTTCTGAACCATCTAT+TGG | - | chr3.2:82842596-82842615 | MS.gene38568:intron | 35.0% |
| !! | TTGATTGGTGGATCGTTTTT+AGG | - | chr3.2:82841741-82841760 | MS.gene38568:intron | 35.0% |
| !!! | AAAAGATTTTCTGGAACAGC+TGG | - | chr3.2:82842147-82842166 | MS.gene38568:intron | 35.0% |
| AAAGGACCACGTGAACAATA+TGG | + | chr3.2:82843202-82843221 | None:intergenic | 40.0% | |
| AAGACTCTATTACACTCGGT+TGG | + | chr3.2:82841939-82841958 | None:intergenic | 40.0% | |
| ACGCAATTGAATTTCATCGG+AGG | + | chr3.2:82841429-82841448 | None:intergenic | 40.0% | |
| AGATGGTTCAGAACTTCATC+TGG | + | chr3.2:82842594-82842613 | None:intergenic | 40.0% | |
| GAAGAAATTGAGAGAGAGGA+AGG | + | chr3.2:82841326-82841345 | None:intergenic | 40.0% | |
| TCATCATCGAAATCACCAAC+AGG | + | chr3.2:82841458-82841477 | None:intergenic | 40.0% | |
| TGAGATATGTGTGTTGCAGA+AGG | - | chr3.2:82841595-82841614 | MS.gene38568:intron | 40.0% | |
| TTGAGAAACATATCCTGCCA+TGG | + | chr3.2:82842362-82842381 | None:intergenic | 40.0% | |
| TTGTTACCTTGATCGGAAAG+GGG | + | chr3.2:82841299-82841318 | None:intergenic | 40.0% | |
| TTTCATAACTGATGCTGCCA+CGG | - | chr3.2:82841904-82841923 | MS.gene38568:intron | 40.0% | |
| ! | AGGGTGTTTGTTACCTTGAT+CGG | + | chr3.2:82841306-82841325 | None:intergenic | 40.0% |
| ! | CAATTGCGTATTGATCCTGT+TGG | - | chr3.2:82841440-82841459 | MS.gene38568:intron | 40.0% |
| ! | CACTCGTCCAAAAGAAGTTT+TGG | - | chr3.2:82842795-82842814 | MS.gene38568:intron | 40.0% |
| ! | CTTAGAGGTGGATCCTTTTA+CGG | - | chr3.2:82841265-82841284 | MS.gene38568:CDS | 40.0% |
| ! | GTTTGTTACCTTGATCGGAA+AGG | + | chr3.2:82841301-82841320 | None:intergenic | 40.0% |
| !! | GAACTCTGAAACACTAACCA+TGG | - | chr3.2:82842342-82842361 | MS.gene38568:intron | 40.0% |
| ACTTTGTGCATATCTGCTGC+AGG | - | chr3.2:82842090-82842109 | MS.gene38568:intron | 45.0% | |
| ATGTCGAATTCGCTTAGAGG+TGG | - | chr3.2:82841253-82841272 | MS.gene38568:CDS | 45.0% | |
| GATGAAATTACCGGTCTTCG+TGG | - | chr3.2:82841473-82841492 | MS.gene38568:intron | 45.0% | |
| TAGTGTGTGCATAAATGGGG+AGG | + | chr3.2:82841534-82841553 | None:intergenic | 45.0% | |
| ! | CAGTTGGTCCTCGTTACTTT+AGG | - | chr3.2:82842826-82842845 | MS.gene38568:intron | 45.0% |
| ! | TCTGAAACACTAACCATGGC+AGG | - | chr3.2:82842346-82842365 | MS.gene38568:intron | 45.0% |
| !! | AACAGGAGTATCGTGCGAAA+TGG | - | chr3.2:82843170-82843189 | MS.gene38568:intron | 45.0% |
| !! | AGTTTTGGCCTTCTAGCAGT+TGG | - | chr3.2:82842810-82842829 | MS.gene38568:intron | 45.0% |
| !!! | CAGAGGAAACATGTTTTGGC+TGG | - | chr3.2:82842973-82842992 | MS.gene38568:intron | 45.0% |
| !! | TAATATAAATATATAAACAA+TGG | + | chr3.2:82842925-82842944 | None:intergenic | 5.0% |
| AACGAGGACCAACTGCTAGA+AGG | + | chr3.2:82842821-82842840 | None:intergenic | 50.0% | |
| CTGCAGGTTGCTGAAGAGAT+AGG | - | chr3.2:82842106-82842125 | MS.gene38568:intron | 50.0% | |
| GCAGCAAATGACAGTGGCAA+AGG | - | chr3.2:82843112-82843131 | MS.gene38568:CDS | 50.0% | |
| TCGAACTTGACCACGAAGAC+CGG | + | chr3.2:82841486-82841505 | None:intergenic | 50.0% | |
| ACAGTGGCAAAGGCTCAAGC+TGG | - | chr3.2:82843122-82843141 | MS.gene38568:intron | 55.0% | |
| AGTGGCAAAGGCTCAAGCTG+GGG | - | chr3.2:82843124-82843143 | MS.gene38568:intron | 55.0% | |
| ATGCTGCCCCTTTCCGATCA+AGG | - | chr3.2:82841290-82841309 | MS.gene38568:CDS | 55.0% | |
| ATTTCATCGGAGGACGCAGC+AGG | + | chr3.2:82841419-82841438 | None:intergenic | 55.0% | |
| CAGTGGCAAAGGCTCAAGCT+GGG | - | chr3.2:82843123-82843142 | MS.gene38568:intron | 55.0% | |
| AGGGGCAGCATCGCCGTAAA+AGG | + | chr3.2:82841281-82841300 | None:intergenic | 60.0% | |
| TCGGTTGGAAGCAGCATCCG+TGG | + | chr3.2:82841924-82841943 | None:intergenic | 60.0% | |
| GGAGGACGCAGCAGGAGTTC+TGG | + | chr3.2:82841411-82841430 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82841253 | 82843277 | 82841253 | ID=MS.gene38568 |
| chr3.2 | mRNA | 82841253 | 82843277 | 82841253 | ID=MS.gene38568.t1;Parent=MS.gene38568 |
| chr3.2 | exon | 82843219 | 82843277 | 82843219 | ID=MS.gene38568.t1.exon1;Parent=MS.gene38568.t1 |
| chr3.2 | CDS | 82843219 | 82843277 | 82843219 | ID=cds.MS.gene38568.t1;Parent=MS.gene38568.t1 |
| chr3.2 | exon | 82843013 | 82843136 | 82843013 | ID=MS.gene38568.t1.exon2;Parent=MS.gene38568.t1 |
| chr3.2 | CDS | 82843013 | 82843136 | 82843013 | ID=cds.MS.gene38568.t1;Parent=MS.gene38568.t1 |
| chr3.2 | exon | 82842362 | 82842418 | 82842362 | ID=MS.gene38568.t1.exon3;Parent=MS.gene38568.t1 |
| chr3.2 | CDS | 82842362 | 82842418 | 82842362 | ID=cds.MS.gene38568.t1;Parent=MS.gene38568.t1 |
| chr3.2 | exon | 82841253 | 82841414 | 82841253 | ID=MS.gene38568.t1.exon4;Parent=MS.gene38568.t1 |
| chr3.2 | CDS | 82841253 | 82841414 | 82841253 | ID=cds.MS.gene38568.t1;Parent=MS.gene38568.t1 |
| Gene Sequence |
| Protein sequence |
