AlfalfaGEDB | MS.gene38828

M. sativa cultivar XinJiangDaYe / MS.gene38828

KEGG: K21777
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38828.t1	XP_024627142.1	98.6	74	1	0	33	106	32	105	4.10E-31	144.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38828.t1	P25011	65.3	72	22	3	34	104	30	99	1.2e-15	84.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38828.t1	G7L5U5	98.6	74	1	0	33	106	32	105	3.0e-31	144.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049397	MS.gene38828	0.81132	7.43E-51	-1.69E-46
MS.gene049596	MS.gene38828	0.830246	3.27E-55	-1.69E-46
MS.gene04985	MS.gene38828	0.822007	2.98E-53	-1.69E-46
MS.gene049989	MS.gene38828	0.869447	3.08E-66	-1.69E-46
MS.gene050297	MS.gene38828	0.86685	2.11E-65	-1.69E-46
MS.gene050648	MS.gene38828	0.803588	3.25E-49	-1.69E-46
MS.gene05124	MS.gene38828	0.82183	3.28E-53	-1.69E-46
MS.gene051263	MS.gene38828	0.818183	2.24E-52	-1.69E-46
MS.gene051423	MS.gene38828	0.80216	6.40E-49	-1.69E-46
MS.gene051629	MS.gene38828	0.84683	1.70E-59	-1.69E-46
MS.gene051955	MS.gene38828	0.806244	9.04E-50	-1.69E-46
MS.gene052143	MS.gene38828	0.801314	9.55E-49	-1.69E-46
MS.gene052308	MS.gene38828	0.822368	2.46E-53	-1.69E-46
MS.gene052367	MS.gene38828	0.90269	7.49E-79	-1.69E-46
MS.gene053173	MS.gene38828	0.851452	8.79E-61	-1.69E-46
MS.gene053416	MS.gene38828	0.85963	3.62E-63	-1.69E-46
MS.gene053417	MS.gene38828	0.859813	3.19E-63	-1.69E-46
MS.gene05369	MS.gene38828	0.825517	4.49E-54	-1.69E-46
MS.gene054551	MS.gene38828	0.83245	9.39E-56	-1.69E-46
MS.gene054593	MS.gene38828	0.807782	4.27E-50	-1.69E-46
MS.gene054643	MS.gene38828	0.815457	9.16E-52	-1.69E-46
MS.gene054662	MS.gene38828	0.818014	2.44E-52	-1.69E-46
MS.gene054885	MS.gene38828	0.822767	1.99E-53	-1.69E-46
MS.gene055308	MS.gene38828	0.847463	1.14E-59	-1.69E-46
MS.gene055578	MS.gene38828	0.831999	1.21E-55	-1.69E-46
MS.gene055957	MS.gene38828	0.834608	2.72E-56	-1.69E-46
MS.gene056041	MS.gene38828	0.855327	6.80E-62	-1.69E-46
MS.gene05640	MS.gene38828	0.840935	6.44E-58	-1.69E-46
MS.gene05732	MS.gene38828	0.812744	3.63E-51	-1.69E-46
MS.gene057367	MS.gene38828	0.833425	5.37E-56	-1.69E-46
MS.gene057458	MS.gene38828	0.822386	2.44E-53	-1.69E-46
MS.gene057483	MS.gene38828	0.807354	5.27E-50	-1.69E-46
MS.gene058818	MS.gene38828	0.832933	7.12E-56	-1.69E-46
MS.gene058827	MS.gene38828	0.819385	1.19E-52	-1.69E-46
MS.gene058844	MS.gene38828	0.810315	1.23E-50	-1.69E-46
MS.gene058853	MS.gene38828	0.822084	2.86E-53	-1.69E-46
MS.gene059300	MS.gene38828	0.80936	1.97E-50	-1.69E-46
MS.gene059553	MS.gene38828	0.839302	1.72E-57	-1.69E-46
MS.gene060473	MS.gene38828	0.863228	2.89E-64	-1.69E-46
MS.gene060565	MS.gene38828	0.857159	1.97E-62	-1.69E-46
MS.gene06057	MS.gene38828	0.811703	6.13E-51	-1.69E-46
MS.gene06093	MS.gene38828	0.873476	1.43E-67	-1.69E-46
MS.gene061260	MS.gene38828	0.875733	2.44E-68	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38828.t1	MTR_7g089080	97.170	106	2	1	1	106	1	105	1.97e-66	216

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 32 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAAATGTTGTCACACTAAA+AGG	0.238632	7.1:+17388011	MS.gene38828:CDS
CGTAGACCACTTCTTGATAT+TGG	0.257214	7.1:+17387990	MS.gene38828:CDS
CTCCTTGTGACAGGGCGATT+TGG	0.266023	7.1:-17388047	None:intergenic
CTCTGGGTTGTTGTTGTTGT+TGG	0.304884	7.1:-17387593	None:intergenic
CAGAAGAAGAACGGTGCAGC+AGG	0.408866	7.1:+17387954	MS.gene38828:CDS
GCTCCTCCTGTTGTTGCTGA+TGG	0.409185	7.1:+17388274	MS.gene38828:CDS
AGCAGTTGCTGAAAACAATA+AGG	0.423523	7.1:+17388106	MS.gene38828:CDS
AACTGCTGCTGCTTGTGCAT+TGG	0.426689	7.1:-17388090	None:intergenic
TGTTATAGGTGATGCTGCCT+TGG	0.451586	7.1:+17387917	MS.gene38828:intron
CTGTTGTTTCCCTCCTCCCA+AGG	0.460174	7.1:-17387934	None:intergenic
TGTTGTTGTTGGTGAACAAT+GGG	0.462538	7.1:-17387582	None:intergenic
TTGTTGTTGTTGGTGAACAA+TGG	0.480167	7.1:-17387583	None:intergenic
GGTGATGCTGCCTTGGGAGG+AGG	0.482861	7.1:+17387924	MS.gene38828:intron
GAAGAAGAACGGTGCAGCAG+GGG	0.508581	7.1:+17387956	MS.gene38828:CDS
GCAACTCCATCAGCAACAAC+AGG	0.508824	7.1:-17388280	None:intergenic
ACAACAGGAGGAGCAGGTCC+AGG	0.526077	7.1:-17388265	None:intergenic
GTGATGCTGCCTTGGGAGGA+GGG	0.530719	7.1:+17387925	MS.gene38828:CDS
AAGAACGGTGCAGCAGGGGA+AGG	0.535783	7.1:+17387960	MS.gene38828:CDS
GTTATAGGTGATGCTGCCTT+GGG	0.538221	7.1:+17387918	MS.gene38828:intron
CAATATCAAGAAGTGGTCTA+CGG	0.545242	7.1:-17387989	None:intergenic
TCAGCAACAACAGGAGGAGC+AGG	0.545915	7.1:-17388271	None:intergenic
ACGGTGCAGCAGGGGAAGGA+AGG	0.557061	7.1:+17387964	MS.gene38828:CDS
GCTTGTGTCAATGTGGCACC+TGG	0.568366	7.1:+17388247	MS.gene38828:CDS
AGCCAAATCGCCCTGTCACA+AGG	0.571983	7.1:+17388045	MS.gene38828:CDS
ATAGGTGATGCTGCCTTGGG+AGG	0.594991	7.1:+17387921	MS.gene38828:intron
AGAAGAAGAACGGTGCAGCA+GGG	0.627002	7.1:+17387955	MS.gene38828:CDS
ACATTTCCAATATCAAGAAG+TGG	0.631314	7.1:-17387996	None:intergenic
GGGAAACAACAGAAGAAGAA+CGG	0.643525	7.1:+17387945	MS.gene38828:CDS
ACTCCATCAGCAACAACAGG+AGG	0.651848	7.1:-17388277	None:intergenic
GAAACAAGCTTGTGTCAATG+TGG	0.703443	7.1:+17388240	MS.gene38828:intron
GCAGCAGTGCTAGAAGAGTG+TGG	0.732690	7.1:+17388301	MS.gene38828:CDS
GCAGTGCTAGAAGAGTGTGG+TGG	0.771527	7.1:+17388304	MS.gene38828:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAAAAAGTTTCGATTTTTTA+GGG	+	chr7.1:17387802-17387821	MS.gene38828:intron	15.0%
!!!	TTAAAAAGTTTCGATTTTTT+AGG	+	chr7.1:17387801-17387820	MS.gene38828:intron	15.0%
!!!	ACTTTTTAAGATTTATCATC+TGG	-	chr7.1:17387790-17387809	None:intergenic	20.0%
!!!	CTTTTTAAGATTTATCATCT+GGG	-	chr7.1:17387789-17387808	None:intergenic	20.0%
!	ACTTTGAGTAAAATAGTTTC+TGG	+	chr7.1:17387695-17387714	MS.gene38828:intron	25.0%
!	CTTTATGGTTTATTTATCCT+GGG	+	chr7.1:17387646-17387665	MS.gene38828:intron	25.0%
!	CTTTGAGTAAAATAGTTTCT+GGG	+	chr7.1:17387696-17387715	MS.gene38828:intron	25.0%
!	TCTTTATGGTTTATTTATCC+TGG	+	chr7.1:17387645-17387664	MS.gene38828:intron	25.0%
!	TTTGCATCAAATCTAGTAAA+GGG	+	chr7.1:17387826-17387845	MS.gene38828:intron	25.0%
!!	TTCTTTTTGGATTTTGTGTT+TGG	+	chr7.1:17387854-17387873	MS.gene38828:intron	25.0%
!!	TTTTGCATCAAATCTAGTAA+AGG	+	chr7.1:17387825-17387844	MS.gene38828:intron	25.0%
!!!	CTTCAATCATTGATTCTTTA+TGG	+	chr7.1:17387631-17387650	MS.gene38828:intron	25.0%
!!!	TGATGATTATTTTCTGAGAT+TGG	+	chr7.1:17388190-17388209	MS.gene38828:intron	25.0%
	ACATTTCCAATATCAAGAAG+TGG	-	chr7.1:17387999-17388018	None:intergenic	30.0%
	ATTGAAAGATCTTGCAAATC+TGG	+	chr7.1:17387749-17387768	MS.gene38828:intron	30.0%
	CACAAACAAACATCAAAAAC+AGG	-	chr7.1:17387894-17387913	None:intergenic	30.0%
	GTTTGTTTGTGCAATGTTAT+AGG	+	chr7.1:17387903-17387922	MS.gene38828:intron	30.0%
	TTGAAAGATCTTGCAAATCT+GGG	+	chr7.1:17387750-17387769	MS.gene38828:intron	30.0%
	AGAAAACACAAACAAACCTC+TGG	-	chr7.1:17387613-17387632	None:intergenic	35.0%
	AGAACAAAAACATTGAACCC+AGG	-	chr7.1:17387666-17387685	None:intergenic	35.0%
	AGCAGTTGCTGAAAACAATA+AGG	+	chr7.1:17388106-17388125	MS.gene38828:CDS	35.0%
	CAATATCAAGAAGTGGTCTA+CGG	-	chr7.1:17387992-17388011	None:intergenic	35.0%
	GAAAACACAAACAAACCTCT+GGG	-	chr7.1:17387612-17387631	None:intergenic	35.0%
	GGAAATGTTGTCACACTAAA+AGG	+	chr7.1:17388011-17388030	MS.gene38828:CDS	35.0%
!	GAGTAAAATAGTTTCTGGGT+TGG	+	chr7.1:17387700-17387719	MS.gene38828:intron	35.0%
!	TGTTGTTGTTGGTGAACAAT+GGG	-	chr7.1:17387585-17387604	None:intergenic	35.0%
!	TTGTTGTTGTTGGTGAACAA+TGG	-	chr7.1:17387586-17387605	None:intergenic	35.0%
!!!	GTAAAGGGTCTTGTTCTTTT+TGG	+	chr7.1:17387841-17387860	MS.gene38828:intron	35.0%
	CACAAAAACTCCTTGTGACA+GGG	-	chr7.1:17388058-17388077	None:intergenic	40.0%
	CGTAGACCACTTCTTGATAT+TGG	+	chr7.1:17387990-17388009	MS.gene38828:CDS	40.0%
	GAAACAAGCTTGTGTCAATG+TGG	+	chr7.1:17388240-17388259	MS.gene38828:intron	40.0%
	GGGAAACAACAGAAGAAGAA+CGG	+	chr7.1:17387945-17387964	MS.gene38828:CDS	40.0%
	CAACAACAACAACAACCCAG+AGG	+	chr7.1:17387594-17387613	MS.gene38828:CDS	45.0%
	GCACAAAAACTCCTTGTGAC+AGG	-	chr7.1:17388059-17388078	None:intergenic	45.0%
	GTTATAGGTGATGCTGCCTT+GGG	+	chr7.1:17387918-17387937	MS.gene38828:intron	45.0%
	TGTTATAGGTGATGCTGCCT+TGG	+	chr7.1:17387917-17387936	MS.gene38828:intron	45.0%
!	CTCTGGGTTGTTGTTGTTGT+TGG	-	chr7.1:17387596-17387615	None:intergenic	45.0%
	ACTCCATCAGCAACAACAGG+AGG	-	chr7.1:17388280-17388299	None:intergenic	50.0%
	AGAAGAAGAACGGTGCAGCA+GGG	+	chr7.1:17387955-17387974	MS.gene38828:CDS	50.0%
	GCAACTCCATCAGCAACAAC+AGG	-	chr7.1:17388283-17388302	None:intergenic	50.0%
!	AACTGCTGCTGCTTGTGCAT+TGG	-	chr7.1:17388093-17388112	None:intergenic	50.0%
	AGCCAAATCGCCCTGTCACA+AGG	+	chr7.1:17388045-17388064	MS.gene38828:CDS	55.0%
	ATAGGTGATGCTGCCTTGGG+AGG	+	chr7.1:17387921-17387940	MS.gene38828:intron	55.0%
	CAGAAGAAGAACGGTGCAGC+AGG	+	chr7.1:17387954-17387973	MS.gene38828:CDS	55.0%
	CTCCTTGTGACAGGGCGATT+TGG	-	chr7.1:17388050-17388069	None:intergenic	55.0%
	GAAGAAGAACGGTGCAGCAG+GGG	+	chr7.1:17387956-17387975	MS.gene38828:CDS	55.0%
	GCAGCAGTGCTAGAAGAGTG+TGG	+	chr7.1:17388301-17388320	MS.gene38828:CDS	55.0%
	GCTCCTCCTGTTGTTGCTGA+TGG	+	chr7.1:17388274-17388293	MS.gene38828:CDS	55.0%
	GCTTGTGTCAATGTGGCACC+TGG	+	chr7.1:17388247-17388266	MS.gene38828:CDS	55.0%
	TCAGCAACAACAGGAGGAGC+AGG	-	chr7.1:17388274-17388293	None:intergenic	55.0%
!	GCAGTGCTAGAAGAGTGTGG+TGG	+	chr7.1:17388304-17388323	MS.gene38828:CDS	55.0%
!!	CTGTTGTTTCCCTCCTCCCA+AGG	-	chr7.1:17387937-17387956	None:intergenic	55.0%
	AAGAACGGTGCAGCAGGGGA+AGG	+	chr7.1:17387960-17387979	MS.gene38828:CDS	60.0%
	ACAACAGGAGGAGCAGGTCC+AGG	-	chr7.1:17388268-17388287	None:intergenic	60.0%
	GTGATGCTGCCTTGGGAGGA+GGG	+	chr7.1:17387925-17387944	MS.gene38828:CDS	60.0%
	ACGGTGCAGCAGGGGAAGGA+AGG	+	chr7.1:17387964-17387983	MS.gene38828:CDS	65.0%
	GGTGATGCTGCCTTGGGAGG+AGG	+	chr7.1:17387924-17387943	MS.gene38828:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	17387570	17388333	17387570	ID=MS.gene38828
chr7.1	mRNA	17387570	17388333	17387570	ID=MS.gene38828.t1;Parent=MS.gene38828
chr7.1	exon	17387570	17387615	17387570	ID=MS.gene38828.t1.exon1;Parent=MS.gene38828.t1
chr7.1	CDS	17387570	17387615	17387570	ID=cds.MS.gene38828.t1;Parent=MS.gene38828.t1
chr7.1	exon	17387925	17388127	17387925	ID=MS.gene38828.t1.exon2;Parent=MS.gene38828.t1
chr7.1	CDS	17387925	17388127	17387925	ID=cds.MS.gene38828.t1;Parent=MS.gene38828.t1
chr7.1	exon	17388241	17388333	17388241	ID=MS.gene38828.t1.exon3;Parent=MS.gene38828.t1
chr7.1	CDS	17388241	17388333	17388241	ID=cds.MS.gene38828.t1;Parent=MS.gene38828.t1

Gene Sequence

>MS.gene38828

ATGGCTTCAAGACCCATTGTTCACCAACAACAACAACAACCCAGAGGTTTGTTTGTGTTTTCTTCAATCATTGATTCTTTATGGTTTATTTATCCTGGGTTCAATGTTTTTGTTCTAAGATTGAAACTTTGAGTAAAATAGTTTCTGGGTTGGTTTCTTTTTCATCTATCTCTTCACTGATTGAAAGATCTTGCAAATCTGGGTTTTTGAAAGAAGCCCAGATGATAAATCTTAAAAAGTTTCGATTTTTTAGGGTTTTGCATCAAATCTAGTAAAGGGTCTTGTTCTTTTTGGATTTTGTGTTTGGATCGAAATCTAGAACCTGTTTTTGATGTTTGTTTGTGCAATGTTATAGGTGATGCTGCCTTGGGAGGAGGGAAACAACAGAAGAAGAACGGTGCAGCAGGGGAAGGAAGGAACCGTAGACCACTTCTTGATATTGGAAATGTTGTCACACTAAAAGGTGTCGAAGTTAAGCCAAATCGCCCTGTCACAAGGAGTTTTTGTGCACAATTACTTGCCAATGCACAAGCAGCAGCAGTTGCTGAAAACAATAAGGTTAGTGATGATTATTTGATTAATCTTTCTTTTCTTTCATTATTTAATTTAATGTTTCATTGTGATGATTATTTTCTGAGATTGGTTTTTTTGTGTTTGATTTGAAATTGAAGAAACAAGCTTGTGTCAATGTGGCACCTGGACCTGCTCCTCCTGTTGTTGCTGATGGAGTTGCAGCAGTGCTAGAAGAGTGTGGTGGCCCCTAA

Protein sequence

>MS.gene38828.t1

MASRPIVHQQQQQPRGDAALGGGKQQKKNGAAGEGRNRRPLLDIGNVVTLKGVEVKPNRPVTRSFCAQLLANAQAAAVAENNKKQACVNVAPGPAPPVVADGVAAVLEECGGP