Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27968.t1 | XP_024628323.1 | 96.5 | 462 | 16 | 0 | 1 | 462 | 1 | 462 | 1.60E-249 | 871.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27968.t1 | Q84MA5 | 72.3 | 451 | 123 | 1 | 6 | 454 | 1 | 451 | 2.1e-189 | 663.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27968.t1 | A0A396GQL0 | 96.5 | 462 | 16 | 0 | 1 | 462 | 1 | 462 | 1.1e-249 | 871.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049259 | MS.gene27968 | 0.829405 | 5.24E-55 | -1.69E-46 |
| MS.gene04986 | MS.gene27968 | 0.801444 | 8.98E-49 | -1.69E-46 |
| MS.gene050173 | MS.gene27968 | 0.822336 | 2.50E-53 | -1.69E-46 |
| MS.gene050216 | MS.gene27968 | -0.825174 | 5.41E-54 | -1.69E-46 |
| MS.gene050381 | MS.gene27968 | 0.858201 | 9.69E-63 | -1.69E-46 |
| MS.gene050868 | MS.gene27968 | -0.804624 | 1.98E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene27968 | -0.806529 | 7.87E-50 | -1.69E-46 |
| MS.gene050883 | MS.gene27968 | 0.812213 | 4.75E-51 | -1.69E-46 |
| MS.gene051044 | MS.gene27968 | 0.833978 | 3.91E-56 | -1.69E-46 |
| MS.gene051127 | MS.gene27968 | 0.813037 | 3.13E-51 | -1.69E-46 |
| MS.gene051138 | MS.gene27968 | 0.805286 | 1.44E-49 | -1.69E-46 |
| MS.gene051863 | MS.gene27968 | 0.800958 | 1.13E-48 | -1.69E-46 |
| MS.gene052566 | MS.gene27968 | 0.805033 | 1.62E-49 | -1.69E-46 |
| MS.gene053069 | MS.gene27968 | 0.827922 | 1.20E-54 | -1.69E-46 |
| MS.gene053420 | MS.gene27968 | 0.822727 | 2.03E-53 | -1.69E-46 |
| MS.gene053488 | MS.gene27968 | 0.838963 | 2.10E-57 | -1.69E-46 |
| MS.gene053561 | MS.gene27968 | 0.869774 | 2.41E-66 | -1.69E-46 |
| MS.gene054054 | MS.gene27968 | 0.813529 | 2.44E-51 | -1.69E-46 |
| MS.gene054056 | MS.gene27968 | 0.863244 | 2.86E-64 | -1.69E-46 |
| MS.gene054708 | MS.gene27968 | 0.830481 | 2.87E-55 | -1.69E-46 |
| MS.gene055124 | MS.gene27968 | 0.855474 | 6.16E-62 | -1.69E-46 |
| MS.gene055154 | MS.gene27968 | 0.821022 | 5.03E-53 | -1.69E-46 |
| MS.gene055202 | MS.gene27968 | 0.806879 | 6.64E-50 | -1.69E-46 |
| MS.gene055942 | MS.gene27968 | 0.852065 | 5.89E-61 | -1.69E-46 |
| MS.gene056311 | MS.gene27968 | 0.809025 | 2.32E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene27968 | 0.82423 | 9.04E-54 | -1.69E-46 |
| MS.gene057549 | MS.gene27968 | 0.801035 | 1.09E-48 | -1.69E-46 |
| MS.gene058093 | MS.gene27968 | 0.838797 | 2.32E-57 | -1.69E-46 |
| MS.gene058099 | MS.gene27968 | 0.853339 | 2.55E-61 | -1.69E-46 |
| MS.gene058109 | MS.gene27968 | 0.827353 | 1.64E-54 | -1.69E-46 |
| MS.gene058171 | MS.gene27968 | 0.846631 | 1.92E-59 | -1.69E-46 |
| MS.gene058173 | MS.gene27968 | 0.834135 | 3.57E-56 | -1.69E-46 |
| MS.gene058175 | MS.gene27968 | 0.844727 | 6.32E-59 | -1.69E-46 |
| MS.gene058268 | MS.gene27968 | 0.800416 | 1.46E-48 | -1.69E-46 |
| MS.gene058493 | MS.gene27968 | 0.800117 | 1.67E-48 | -1.69E-46 |
| MS.gene058628 | MS.gene27968 | 0.807034 | 6.16E-50 | -1.69E-46 |
| MS.gene058629 | MS.gene27968 | 0.802474 | 5.52E-49 | -1.69E-46 |
| MS.gene058630 | MS.gene27968 | 0.800322 | 1.52E-48 | -1.69E-46 |
| MS.gene058840 | MS.gene27968 | 0.82639 | 2.79E-54 | -1.69E-46 |
| MS.gene059037 | MS.gene27968 | 0.811336 | 7.37E-51 | -1.69E-46 |
| MS.gene059045 | MS.gene27968 | 0.819219 | 1.30E-52 | -1.69E-46 |
| MS.gene059223 | MS.gene27968 | 0.804985 | 1.66E-49 | -1.69E-46 |
| MS.gene059690 | MS.gene27968 | 0.836096 | 1.14E-56 | -1.69E-46 |
| MS.gene059691 | MS.gene27968 | 0.821158 | 4.68E-53 | -1.69E-46 |
| MS.gene059694 | MS.gene27968 | 0.840882 | 6.65E-58 | -1.69E-46 |
| MS.gene059697 | MS.gene27968 | 0.840662 | 7.60E-58 | -1.69E-46 |
| MS.gene059865 | MS.gene27968 | -0.804176 | 2.45E-49 | -1.69E-46 |
| MS.gene059916 | MS.gene27968 | 0.801251 | 9.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08137 | MS.gene27968 | PPI |
| MS.gene007812 | MS.gene27968 | PPI |
| MS.gene007811 | MS.gene27968 | PPI |
| MS.gene042480 | MS.gene27968 | PPI |
| MS.gene41795 | MS.gene27968 | PPI |
| MS.gene08144 | MS.gene27968 | PPI |
| MS.gene41792 | MS.gene27968 | PPI |
| MS.gene27968 | MS.gene073450 | PPI |
| MS.gene38965 | MS.gene27968 | PPI |
| MS.gene38964 | MS.gene27968 | PPI |
| MS.gene58674 | MS.gene27968 | PPI |
| MS.gene032361 | MS.gene27968 | PPI |
| MS.gene00402 | MS.gene27968 | PPI |
| MS.gene042491 | MS.gene27968 | PPI |
| MS.gene041367 | MS.gene27968 | PPI |
| MS.gene47297 | MS.gene27968 | PPI |
| MS.gene08148 | MS.gene27968 | PPI |
| MS.gene49831 | MS.gene27968 | PPI |
| MS.gene32277 | MS.gene27968 | PPI |
| MS.gene41790 | MS.gene27968 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27968.t1 | MTR_8g089320 | 93.096 | 449 | 31 | 0 | 14 | 462 | 13 | 461 | 0.0 | 865 |
| MS.gene27968.t1 | MTR_8g089360 | 77.324 | 441 | 100 | 0 | 22 | 462 | 9 | 449 | 0.0 | 692 |
| MS.gene27968.t1 | MTR_8g089360 | 77.324 | 441 | 100 | 0 | 22 | 462 | 26 | 466 | 0.0 | 692 |
| MS.gene27968.t1 | MTR_1g030660 | 68.852 | 427 | 133 | 0 | 29 | 455 | 23 | 449 | 0.0 | 623 |
| MS.gene27968.t1 | MTR_8g089340 | 96.486 | 313 | 11 | 0 | 150 | 462 | 1 | 313 | 0.0 | 610 |
| MS.gene27968.t1 | MTR_2g035430 | 61.174 | 443 | 172 | 0 | 20 | 462 | 19 | 461 | 0.0 | 585 |
| MS.gene27968.t1 | MTR_8g461380 | 51.121 | 446 | 218 | 0 | 20 | 465 | 26 | 471 | 6.88e-160 | 466 |
| MS.gene27968.t1 | MTR_1g111740 | 44.519 | 447 | 239 | 1 | 29 | 466 | 6 | 452 | 4.52e-129 | 387 |
| MS.gene27968.t1 | MTR_4g099270 | 45.320 | 406 | 218 | 2 | 52 | 453 | 1 | 406 | 1.82e-112 | 343 |
| MS.gene27968.t1 | MTR_4g099270 | 45.333 | 375 | 201 | 2 | 35 | 405 | 5 | 379 | 1.67e-108 | 328 |
| MS.gene27968.t1 | MTR_8g089342 | 96.403 | 139 | 5 | 0 | 1 | 139 | 1 | 139 | 3.70e-95 | 284 |
| MS.gene27968.t1 | MTR_4g099270 | 44.884 | 303 | 163 | 2 | 35 | 333 | 5 | 307 | 8.18e-85 | 264 |
| MS.gene27968.t1 | MTR_6g027630 | 35.867 | 421 | 260 | 5 | 35 | 447 | 6 | 424 | 7.10e-81 | 262 |
| MS.gene27968.t1 | MTR_6g027630 | 35.867 | 421 | 260 | 5 | 35 | 447 | 6 | 424 | 2.77e-80 | 262 |
| MS.gene27968.t1 | MTR_7g086510 | 37.340 | 391 | 238 | 2 | 64 | 447 | 29 | 419 | 5.86e-79 | 258 |
| MS.gene27968.t1 | MTR_6g027680 | 35.897 | 390 | 241 | 3 | 66 | 447 | 39 | 427 | 2.27e-77 | 253 |
| MS.gene27968.t1 | MTR_6g027650 | 36.528 | 386 | 236 | 4 | 70 | 447 | 33 | 417 | 5.01e-77 | 253 |
| MS.gene27968.t1 | MTR_6g027660 | 32.867 | 429 | 275 | 4 | 26 | 447 | 3 | 425 | 7.63e-76 | 250 |
| MS.gene27968.t1 | MTR_7g086610 | 36.554 | 383 | 234 | 3 | 73 | 447 | 32 | 413 | 1.37e-75 | 249 |
| MS.gene27968.t1 | MTR_4g099270 | 44.218 | 294 | 160 | 2 | 164 | 453 | 1 | 294 | 1.43e-75 | 244 |
| MS.gene27968.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 4.01e-61 | 209 |
| MS.gene27968.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 4.63e-61 | 207 |
| MS.gene27968.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 1.41e-60 | 208 |
| MS.gene27968.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 1.46e-60 | 209 |
| MS.gene27968.t1 | MTR_6g027630 | 35.000 | 340 | 212 | 4 | 116 | 447 | 1 | 339 | 6.35e-60 | 206 |
| MS.gene27968.t1 | MTR_6g034535 | 45.070 | 142 | 69 | 3 | 329 | 462 | 49 | 189 | 1.02e-29 | 119 |
| MS.gene27968.t1 | MTR_6g034535 | 41.667 | 96 | 31 | 1 | 99 | 194 | 19 | 89 | 1.38e-14 | 75.1 |
| MS.gene27968.t1 | MTR_6g027670 | 33.544 | 158 | 105 | 0 | 290 | 447 | 1 | 158 | 2.30e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27968.t1 | AT4G21120 | 71.965 | 453 | 125 | 1 | 8 | 458 | 3 | 455 | 0.0 | 695 |
| MS.gene27968.t1 | AT2G34960 | 58.315 | 451 | 187 | 1 | 12 | 462 | 3 | 452 | 0.0 | 548 |
| MS.gene27968.t1 | AT1G17120 | 54.628 | 443 | 201 | 0 | 14 | 456 | 22 | 464 | 1.17e-169 | 491 |
| MS.gene27968.t1 | AT4G21120 | 71.148 | 305 | 88 | 0 | 154 | 458 | 1 | 305 | 1.49e-160 | 462 |
| MS.gene27968.t1 | AT5G04770 | 42.825 | 446 | 245 | 2 | 31 | 466 | 15 | 460 | 2.65e-123 | 372 |
| MS.gene27968.t1 | AT3G10600 | 41.648 | 449 | 252 | 2 | 28 | 466 | 11 | 459 | 1.96e-120 | 365 |
| MS.gene27968.t1 | AT5G04770 | 42.448 | 384 | 211 | 2 | 31 | 404 | 15 | 398 | 4.84e-109 | 330 |
| MS.gene27968.t1 | AT5G36940 | 37.240 | 384 | 234 | 3 | 71 | 447 | 27 | 410 | 2.41e-80 | 261 |
| MS.gene27968.t1 | AT3G03720 | 32.877 | 438 | 284 | 4 | 54 | 483 | 7 | 442 | 1.46e-77 | 254 |
| MS.gene27968.t1 | AT3G10600 | 39.936 | 313 | 178 | 2 | 164 | 466 | 1 | 313 | 8.43e-76 | 245 |
| MS.gene27968.t1 | AT1G58030 | 35.325 | 385 | 242 | 3 | 70 | 447 | 37 | 421 | 1.37e-75 | 249 |
| MS.gene27968.t1 | AT5G04770 | 41.214 | 313 | 174 | 2 | 164 | 466 | 1 | 313 | 2.22e-73 | 238 |
| MS.gene27968.t1 | AT1G05940 | 30.964 | 394 | 254 | 4 | 65 | 446 | 40 | 427 | 4.94e-60 | 205 |
| MS.gene27968.t1 | AT1G05940 | 30.964 | 394 | 254 | 4 | 65 | 446 | 40 | 427 | 2.12e-59 | 204 |
| MS.gene27968.t1 | AT1G05940 | 30.964 | 394 | 254 | 4 | 65 | 446 | 40 | 427 | 5.39e-59 | 204 |
| MS.gene27968.t1 | AT1G05940 | 29.412 | 306 | 200 | 2 | 152 | 446 | 9 | 309 | 4.46e-37 | 142 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGACTTCACTCCTTTC+GGG | 0.224601 | 4.4:+11917337 | MS.gene27968:CDS |
| TTCAATGACTTCACTCCTTT+CGG | 0.234746 | 4.4:+11917336 | MS.gene27968:CDS |
| CGCAGAGCTGGTGGAGATTA+AGG | 0.270062 | 4.4:+11911522 | MS.gene27968:CDS |
| GTTGCAGAGGGTGGCAAAAT+AGG | 0.283118 | 4.4:-11917097 | None:intergenic |
| CTTTGATGCAGTTTCAACTA+TGG | 0.326491 | 4.4:+11917410 | MS.gene27968:CDS |
| CATCTTGACCCTATTGCTAT+TGG | 0.330251 | 4.4:+11917174 | MS.gene27968:CDS |
| TGCTTACTTGAGAGTAGAAA+TGG | 0.338114 | 4.4:+11916990 | MS.gene27968:CDS |
| GACATTCCTATTGGTCTAGT+TGG | 0.348285 | 4.4:+11917459 | MS.gene27968:CDS |
| CACAATATGAACCCTGACTA+TGG | 0.355787 | 4.4:+11917150 | MS.gene27968:CDS |
| GCTAAGTACATCGTTTCATT+AGG | 0.362872 | 4.4:+11917609 | MS.gene27968:CDS |
| ACTAGAGCTCCAATAGCAAT+AGG | 0.367625 | 4.4:-11917183 | None:intergenic |
| ATATTCAAGGAGGATGTTTC+CGG | 0.371568 | 4.4:-11917037 | None:intergenic |
| TCCGGAATATTTGTGCTTAC+CGG | 0.375172 | 4.4:+11911622 | MS.gene27968:CDS |
| GCTGTGGAAATTCCGGTTGC+TGG | 0.377288 | 4.4:+11911742 | MS.gene27968:CDS |
| TAGTGCTGTTGGAATGGATT+GGG | 0.389974 | 4.4:+11917587 | MS.gene27968:CDS |
| CACCAGCTCTGCGTGGTCAC+TGG | 0.392261 | 4.4:-11911512 | None:intergenic |
| TCCGGTAAGCACAAATATTC+CGG | 0.393998 | 4.4:-11911623 | None:intergenic |
| GCTCTTGTTGATGAAAGAAC+TGG | 0.394168 | 4.4:+11917732 | MS.gene27968:CDS |
| GGGTCAAGATGGCCATAGTC+AGG | 0.395099 | 4.4:-11917162 | None:intergenic |
| TGGTGGGACTTGATGTGGTT+TGG | 0.401009 | 4.4:+11911580 | MS.gene27968:CDS |
| TCAAGTGGGGTAACTACAAA+AGG | 0.402045 | 4.4:+11917906 | MS.gene27968:CDS |
| GAGGTGGTTGACGGCGGCGG+AGG | 0.404581 | 4.4:+11911358 | MS.gene27968:CDS |
| GCATGGAATGGTCAGTTCTT+CGG | 0.404608 | 4.4:+11917362 | MS.gene27968:CDS |
| AGAGTTTGCTGTGGAAATTC+CGG | 0.413761 | 4.4:+11911735 | MS.gene27968:CDS |
| ATTATCTTCATAGTAATTGC+TGG | 0.415527 | 4.4:+11917288 | MS.gene27968:CDS |
| TTTGGTATCGGCGCTGTTGT+CGG | 0.416973 | 4.4:+11911598 | MS.gene27968:CDS |
| GGCTAAGGAGCATGCAGGTC+CGG | 0.426445 | 4.4:+11911651 | MS.gene27968:CDS |
| ATTGATCCAACTAGACCAAT+AGG | 0.431013 | 4.4:-11917465 | None:intergenic |
| TTCACTCCTTTCGGGTTGCA+TGG | 0.432881 | 4.4:+11917345 | MS.gene27968:CDS |
| TTAGTGCTGTTGGAATGGAT+TGG | 0.443178 | 4.4:+11917586 | MS.gene27968:CDS |
| ATCGGCGCTGTTGTCGGCTC+CGG | 0.443812 | 4.4:+11911604 | MS.gene27968:CDS |
| GACTTGATGTGGTTTGGTAT+CGG | 0.444489 | 4.4:+11911586 | MS.gene27968:CDS |
| CTCCATCGTTGTTATAAAGT+TGG | 0.446505 | 4.4:-11927246 | None:intergenic |
| GGAGGAGTCGTTTAAGAGTT+GGG | 0.454594 | 4.4:+11911426 | MS.gene27968:CDS |
| GGAAACACCTCTCCGGTTGA+AGG | 0.459143 | 4.4:+11911471 | MS.gene27968:CDS |
| ACTACTATACGAAAATCATC+AGG | 0.459755 | 4.4:-11917126 | None:intergenic |
| GTGTTGTCGTTTGTCATCTC+CGG | 0.461483 | 4.4:+11911679 | MS.gene27968:CDS |
| TCCTTTCGGGTTGCATGGAA+TGG | 0.461688 | 4.4:+11917350 | MS.gene27968:CDS |
| CGGAGGAGTCGTTTAAGAGT+TGG | 0.463490 | 4.4:+11911425 | MS.gene27968:CDS |
| GCAACTGAGAAAGGAGCATC+AGG | 0.468881 | 4.4:-11917561 | None:intergenic |
| GGAGAGGTGGTTGACGGCGG+CGG | 0.471520 | 4.4:+11911355 | MS.gene27968:CDS |
| ATTGAGATCGTAGCATTCAT+AGG | 0.474323 | 4.4:-11917759 | None:intergenic |
| CCTGGTAGAGACATTCCTAT+TGG | 0.474972 | 4.4:+11917450 | MS.gene27968:CDS |
| CAACTCTTAAACGACTCCTC+CGG | 0.477205 | 4.4:-11911424 | None:intergenic |
| GCACTAAAAGCAACTGAGAA+AGG | 0.478246 | 4.4:-11917570 | None:intergenic |
| GCGGTTGGAGAGGTGGTTGA+CGG | 0.480185 | 4.4:+11911349 | MS.gene27968:CDS |
| TCAACAAACGATCCTTCAAC+CGG | 0.481067 | 4.4:-11911483 | None:intergenic |
| CGTTCAACAAACACGTGAAA+AGG | 0.481781 | 4.4:+11927206 | MS.gene27968:CDS |
| GTTGAAGATGGAAGAGCCTT+TGG | 0.481809 | 4.4:-11917235 | None:intergenic |
| AGATGAAGAAGACACTGAAT+TGG | 0.481831 | 4.4:+11911560 | MS.gene27968:CDS |
| TAAGAGAAAGTACCAGCAAC+CGG | 0.485484 | 4.4:-11911754 | None:intergenic |
| GATGTTTCCGGCAGCTATGA+AGG | 0.485872 | 4.4:-11917025 | None:intergenic |
| ATCCTCCTTGAATATGTCAT+AGG | 0.488387 | 4.4:+11917045 | MS.gene27968:CDS |
| AACTCTTAAACGACTCCTCC+GGG | 0.489247 | 4.4:-11911423 | None:intergenic |
| ACGCCGCGGTAGCTCGATCA+TGG | 0.494424 | 4.4:+11917070 | MS.gene27968:CDS |
| AAACTACGGAAAATCTATCA+TGG | 0.496080 | 4.4:+11911450 | MS.gene27968:CDS |
| CCAATAGGAATGTCTCTACC+AGG | 0.501633 | 4.4:-11917450 | None:intergenic |
| TAAGGAGATATTATTCAAGT+GGG | 0.502977 | 4.4:+11917892 | MS.gene27968:CDS |
| CTAGAGCTCCAATAGCAATA+GGG | 0.517338 | 4.4:-11917182 | None:intergenic |
| ATCCAGTGACCACGCAGAGC+TGG | 0.517712 | 4.4:+11911510 | MS.gene27968:CDS |
| GCTTACTTGAGAGTAGAAAT+GGG | 0.528942 | 4.4:+11916991 | MS.gene27968:CDS |
| TTTGTTGCCTTCATAGCTGC+CGG | 0.530560 | 4.4:+11917018 | MS.gene27968:CDS |
| CTTGCAGTTTACAGCACCAA+AGG | 0.534562 | 4.4:+11917219 | MS.gene27968:CDS |
| ATAAAGTAGAAATCGACAAA+AGG | 0.538029 | 4.4:-11917836 | None:intergenic |
| CTATCATGGAAACACCTCTC+CGG | 0.545103 | 4.4:+11911464 | MS.gene27968:CDS |
| TGTGGCTATGTAGTTGAAGA+TGG | 0.545536 | 4.4:-11917247 | None:intergenic |
| CGTTGCCTATGACATATTCA+AGG | 0.547193 | 4.4:-11917050 | None:intergenic |
| CAGGAACATGGCGGTTGGAG+AGG | 0.548690 | 4.4:+11911339 | None:intergenic |
| ACAAACGACAACACAACTGC+CGG | 0.550560 | 4.4:-11911670 | None:intergenic |
| TGATAACAAAGCAGATATAC+CGG | 0.555679 | 4.4:-11911698 | None:intergenic |
| CAGTGACCACGCAGAGCTGG+TGG | 0.558685 | 4.4:+11911513 | MS.gene27968:CDS |
| GTAAACTGCAAGGGCTGTGA+TGG | 0.563586 | 4.4:-11917208 | None:intergenic |
| CATAGTCAGGGTTCATATTG+TGG | 0.563878 | 4.4:-11917149 | None:intergenic |
| TGAAGAAGACACTGAATTGG+TGG | 0.564541 | 4.4:+11911563 | MS.gene27968:CDS |
| CTTTGGTGCTGTAAACTGCA+AGG | 0.567605 | 4.4:-11917218 | None:intergenic |
| GAAAACAGGAACATGGCGGT+TGG | 0.569132 | 4.4:+11911334 | None:intergenic |
| CAAGTGGGGTAACTACAAAA+GGG | 0.569446 | 4.4:+11917907 | MS.gene27968:CDS |
| ATTTGTGCTTACCGGACTTG+AGG | 0.572133 | 4.4:+11911630 | MS.gene27968:CDS |
| CAATAGCAATAGGGTCAAGA+TGG | 0.574940 | 4.4:-11917173 | None:intergenic |
| GCTTACCGGACTTGAGGCTA+AGG | 0.575661 | 4.4:+11911636 | MS.gene27968:CDS |
| TTTAAGAGTTGGGAAAACTA+CGG | 0.577286 | 4.4:+11911436 | MS.gene27968:CDS |
| GTAAGGAGATATTATTCAAG+TGG | 0.577397 | 4.4:+11917891 | MS.gene27968:CDS |
| GAACATGGCGGTTGGAGAGG+TGG | 0.581100 | 4.4:+11911342 | None:intergenic |
| TGAATTGGTGGGACTTGATG+TGG | 0.581666 | 4.4:+11911575 | MS.gene27968:CDS |
| GACCAACTTTATAACAACGA+TGG | 0.582240 | 4.4:+11927244 | MS.gene27968:CDS |
| GTTAGCTAGAATACTAAGAT+CGG | 0.584642 | 4.4:-11917814 | None:intergenic |
| GTTTCATTAGGTGCTTTGAA+AGG | 0.590596 | 4.4:+11917621 | MS.gene27968:CDS |
| GCAGAGGGTGGCAAAATAGG+AGG | 0.598124 | 4.4:-11917094 | None:intergenic |
| GTACTCACATGATGCCACCT+TGG | 0.601374 | 4.4:+11917706 | MS.gene27968:CDS |
| ATGCTCCTTAGCCTCAAGTC+CGG | 0.602400 | 4.4:-11911641 | None:intergenic |
| CTTGAGGCTAAGGAGCATGC+AGG | 0.604195 | 4.4:+11911646 | MS.gene27968:CDS |
| GGCGGAGGAGTACGTAGAAG+AGG | 0.614194 | 4.4:+11911373 | MS.gene27968:CDS |
| GTGGAGATTAAGGCTAGGAG+TGG | 0.614966 | 4.4:+11911532 | MS.gene27968:CDS |
| ACCATTCCATGCAACCCGAA+AGG | 0.616795 | 4.4:-11917351 | None:intergenic |
| TTTGGTGCTGTAAACTGCAA+GGG | 0.618827 | 4.4:-11917217 | None:intergenic |
| GGTCAAGATGGCCATAGTCA+GGG | 0.621031 | 4.4:-11917161 | None:intergenic |
| TTGTTATACAGAGTTTGCTG+TGG | 0.622991 | 4.4:+11911726 | MS.gene27968:CDS |
| GAAGAAGACACTGAATTGGT+GGG | 0.623639 | 4.4:+11911564 | MS.gene27968:CDS |
| GTTGGAGAGGTGGTTGACGG+CGG | 0.625310 | 4.4:+11911352 | MS.gene27968:CDS |
| AGCTGGTGGAGATTAAGGCT+AGG | 0.626254 | 4.4:+11911527 | MS.gene27968:CDS |
| AATATAAGCAAAGAAAAGAA+CGG | 0.627891 | 4.4:-11917385 | None:intergenic |
| TGCTTTGAAAGGAATGACAA+CGG | 0.638848 | 4.4:+11917632 | MS.gene27968:CDS |
| CATAGCCACAATGTTCCACA+TGG | 0.652539 | 4.4:+11917260 | MS.gene27968:CDS |
| TGGAGATTAAGGCTAGGAGT+GGG | 0.659365 | 4.4:+11911533 | MS.gene27968:CDS |
| CTACTATACGAAAATCATCA+GGG | 0.667731 | 4.4:-11917125 | None:intergenic |
| AAGGAGATATTATTCAAGTG+GGG | 0.676082 | 4.4:+11917893 | MS.gene27968:CDS |
| GGTCCATGATCGAGCTACCG+CGG | 0.680216 | 4.4:-11917073 | None:intergenic |
| GACAGCCATGTGGAACATTG+TGG | 0.684798 | 4.4:-11917265 | None:intergenic |
| CAATAGGAATGTCTCTACCA+GGG | 0.688021 | 4.4:-11917449 | None:intergenic |
| TAATCTCCACCAGCTCTGCG+TGG | 0.688075 | 4.4:-11911519 | None:intergenic |
| AAACGATCCTTCAACCGGAG+AGG | 0.694839 | 4.4:-11911478 | None:intergenic |
| TGAAGATAATGACAGCCATG+TGG | 0.711409 | 4.4:-11917275 | None:intergenic |
| TGCCTATGACATATTCAAGG+AGG | 0.723417 | 4.4:-11917047 | None:intergenic |
| TCAACAAGAGCAAACCAAGG+TGG | 0.728106 | 4.4:-11917720 | None:intergenic |
| TCATCAACAAGAGCAAACCA+AGG | 0.735762 | 4.4:-11917723 | None:intergenic |
| ATATGTCATAGGCAACGCCG+CGG | 0.783643 | 4.4:+11917056 | MS.gene27968:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 11911346 | 11927273 | 11911346 | ID=MS.gene27968 |
| chr4.4 | mRNA | 11911346 | 11927273 | 11911346 | ID=MS.gene27968.t1;Parent=MS.gene27968 |
| chr4.4 | exon | 11911346 | 11911763 | 11911346 | ID=MS.gene27968.t1.exon1;Parent=MS.gene27968.t1 |
| chr4.4 | CDS | 11911346 | 11911763 | 11911346 | ID=cds.MS.gene27968.t1;Parent=MS.gene27968.t1 |
| chr4.4 | exon | 11916980 | 11917935 | 11916980 | ID=MS.gene27968.t1.exon2;Parent=MS.gene27968.t1 |
| chr4.4 | CDS | 11916980 | 11917935 | 11916980 | ID=cds.MS.gene27968.t1;Parent=MS.gene27968.t1 |
| chr4.4 | exon | 11927190 | 11927273 | 11927190 | ID=MS.gene27968.t1.exon3;Parent=MS.gene27968.t1 |
| chr4.4 | CDS | 11927190 | 11927273 | 11927190 | ID=cds.MS.gene27968.t1;Parent=MS.gene27968.t1 |
| Gene Sequence |
| Protein sequence |
