Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47930.t1 | XP_024628323.1 | 96.8 | 462 | 15 | 0 | 1 | 462 | 1 | 462 | 1.20E-249 | 872.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47930.t1 | Q84MA5 | 72.5 | 451 | 122 | 1 | 6 | 454 | 1 | 451 | 1.6e-189 | 663.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47930.t1 | A0A396GQL0 | 96.8 | 462 | 15 | 0 | 1 | 462 | 1 | 462 | 8.8e-250 | 872.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049259 | MS.gene47930 | 0.847748 | 9.50E-60 | -1.69E-46 |
| MS.gene049611 | MS.gene47930 | 0.800368 | 1.49E-48 | -1.69E-46 |
| MS.gene049634 | MS.gene47930 | 0.82624 | 3.02E-54 | -1.69E-46 |
| MS.gene04986 | MS.gene47930 | 0.831902 | 1.28E-55 | -1.69E-46 |
| MS.gene05015 | MS.gene47930 | 0.802527 | 5.38E-49 | -1.69E-46 |
| MS.gene050173 | MS.gene47930 | 0.836237 | 1.05E-56 | -1.69E-46 |
| MS.gene050216 | MS.gene47930 | -0.828082 | 1.10E-54 | -1.69E-46 |
| MS.gene050381 | MS.gene47930 | 0.852717 | 3.84E-61 | -1.69E-46 |
| MS.gene050612 | MS.gene47930 | -0.810626 | 1.05E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene47930 | -0.818549 | 1.85E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene47930 | -0.820527 | 6.54E-53 | -1.69E-46 |
| MS.gene050883 | MS.gene47930 | 0.8266 | 2.48E-54 | -1.69E-46 |
| MS.gene051044 | MS.gene47930 | 0.827801 | 1.28E-54 | -1.69E-46 |
| MS.gene05104 | MS.gene47930 | 0.801343 | 9.42E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene47930 | 0.833301 | 5.77E-56 | -1.69E-46 |
| MS.gene051138 | MS.gene47930 | 0.81624 | 6.12E-52 | -1.69E-46 |
| MS.gene051863 | MS.gene47930 | 0.80841 | 3.14E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene47930 | 0.812114 | 4.99E-51 | -1.69E-46 |
| MS.gene052566 | MS.gene47930 | 0.834617 | 2.70E-56 | -1.69E-46 |
| MS.gene053069 | MS.gene47930 | 0.834793 | 2.44E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene47930 | 0.830893 | 2.27E-55 | -1.69E-46 |
| MS.gene053488 | MS.gene47930 | 0.844441 | 7.55E-59 | -1.69E-46 |
| MS.gene053561 | MS.gene47930 | 0.890573 | 8.72E-74 | -1.69E-46 |
| MS.gene054054 | MS.gene47930 | 0.844499 | 7.28E-59 | -1.69E-46 |
| MS.gene054056 | MS.gene47930 | 0.8471 | 1.43E-59 | -1.69E-46 |
| MS.gene054708 | MS.gene47930 | 0.832537 | 8.94E-56 | -1.69E-46 |
| MS.gene055124 | MS.gene47930 | 0.859735 | 3.37E-63 | -1.69E-46 |
| MS.gene055154 | MS.gene47930 | 0.835748 | 1.40E-56 | -1.69E-46 |
| MS.gene055202 | MS.gene47930 | 0.822288 | 2.57E-53 | -1.69E-46 |
| MS.gene055942 | MS.gene47930 | 0.868924 | 4.55E-66 | -1.69E-46 |
| MS.gene056311 | MS.gene47930 | 0.822453 | 2.35E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene47930 | -0.816538 | 5.25E-52 | -1.69E-46 |
| MS.gene057014 | MS.gene47930 | 0.832954 | 7.04E-56 | -1.69E-46 |
| MS.gene057549 | MS.gene47930 | 0.801959 | 7.04E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene47930 | 0.826204 | 3.08E-54 | -1.69E-46 |
| MS.gene058099 | MS.gene47930 | 0.843675 | 1.21E-58 | -1.69E-46 |
| MS.gene058109 | MS.gene47930 | 0.821601 | 3.70E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene47930 | 0.853486 | 2.31E-61 | -1.69E-46 |
| MS.gene058173 | MS.gene47930 | 0.848285 | 6.76E-60 | -1.69E-46 |
| MS.gene058175 | MS.gene47930 | 0.852613 | 4.11E-61 | -1.69E-46 |
| MS.gene058493 | MS.gene47930 | 0.818057 | 2.39E-52 | -1.69E-46 |
| MS.gene058628 | MS.gene47930 | 0.826173 | 3.14E-54 | -1.69E-46 |
| MS.gene058629 | MS.gene47930 | 0.820773 | 5.74E-53 | -1.69E-46 |
| MS.gene058630 | MS.gene47930 | 0.813094 | 3.05E-51 | -1.69E-46 |
| MS.gene058840 | MS.gene47930 | 0.818955 | 1.50E-52 | -1.69E-46 |
| MS.gene05884 | MS.gene47930 | 0.829461 | 5.08E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene47930 | -0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene059037 | MS.gene47930 | 0.813456 | 2.54E-51 | -1.69E-46 |
| MS.gene059045 | MS.gene47930 | 0.815982 | 6.99E-52 | -1.69E-46 |
| MS.gene059223 | MS.gene47930 | 0.810946 | 8.95E-51 | -1.69E-46 |
| MS.gene059690 | MS.gene47930 | 0.841977 | 3.43E-58 | -1.69E-46 |
| MS.gene059691 | MS.gene47930 | 0.827978 | 1.16E-54 | -1.69E-46 |
| MS.gene059694 | MS.gene47930 | 0.844503 | 7.26E-59 | -1.69E-46 |
| MS.gene059697 | MS.gene47930 | 0.844185 | 8.84E-59 | -1.69E-46 |
| MS.gene059703 | MS.gene47930 | 0.804755 | 1.85E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene47930 | -0.817033 | 4.07E-52 | -1.69E-46 |
| MS.gene059916 | MS.gene47930 | 0.8059 | 1.07E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47930 | MS.gene47297 | PPI |
| MS.gene47930 | MS.gene32277 | PPI |
| MS.gene41790 | MS.gene47930 | PPI |
| MS.gene007811 | MS.gene47930 | PPI |
| MS.gene41795 | MS.gene47930 | PPI |
| MS.gene47930 | MS.gene073450 | PPI |
| MS.gene41792 | MS.gene47930 | PPI |
| MS.gene38965 | MS.gene47930 | PPI |
| MS.gene38964 | MS.gene47930 | PPI |
| MS.gene47930 | MS.gene007812 | PPI |
| MS.gene042480 | MS.gene47930 | PPI |
| MS.gene58674 | MS.gene47930 | PPI |
| MS.gene47930 | MS.gene08144 | PPI |
| MS.gene032361 | MS.gene47930 | PPI |
| MS.gene47930 | MS.gene041367 | PPI |
| MS.gene49831 | MS.gene47930 | PPI |
| MS.gene47930 | MS.gene08137 | PPI |
| MS.gene47930 | MS.gene00402 | PPI |
| MS.gene08148 | MS.gene47930 | PPI |
| MS.gene042491 | MS.gene47930 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47930.t1 | MTR_8g089320 | 93.318 | 449 | 30 | 0 | 14 | 462 | 13 | 461 | 0.0 | 865 |
| MS.gene47930.t1 | MTR_8g089360 | 77.551 | 441 | 99 | 0 | 22 | 462 | 9 | 449 | 0.0 | 693 |
| MS.gene47930.t1 | MTR_8g089360 | 77.551 | 441 | 99 | 0 | 22 | 462 | 26 | 466 | 0.0 | 692 |
| MS.gene47930.t1 | MTR_1g030660 | 69.087 | 427 | 132 | 0 | 29 | 455 | 23 | 449 | 0.0 | 624 |
| MS.gene47930.t1 | MTR_8g089340 | 96.805 | 313 | 10 | 0 | 150 | 462 | 1 | 313 | 0.0 | 610 |
| MS.gene47930.t1 | MTR_2g035430 | 61.174 | 443 | 172 | 0 | 20 | 462 | 19 | 461 | 0.0 | 585 |
| MS.gene47930.t1 | MTR_8g461380 | 51.121 | 446 | 218 | 0 | 20 | 465 | 26 | 471 | 7.84e-160 | 466 |
| MS.gene47930.t1 | MTR_1g111740 | 44.519 | 447 | 239 | 1 | 29 | 466 | 6 | 452 | 5.49e-129 | 387 |
| MS.gene47930.t1 | MTR_4g099270 | 45.320 | 406 | 218 | 2 | 52 | 453 | 1 | 406 | 2.41e-112 | 343 |
| MS.gene47930.t1 | MTR_4g099270 | 45.333 | 375 | 201 | 2 | 35 | 405 | 5 | 379 | 1.86e-108 | 328 |
| MS.gene47930.t1 | MTR_8g089342 | 96.403 | 139 | 5 | 0 | 1 | 139 | 1 | 139 | 3.95e-95 | 284 |
| MS.gene47930.t1 | MTR_4g099270 | 44.884 | 303 | 163 | 2 | 35 | 333 | 5 | 307 | 1.07e-84 | 263 |
| MS.gene47930.t1 | MTR_6g027630 | 35.867 | 421 | 260 | 5 | 35 | 447 | 6 | 424 | 6.59e-81 | 262 |
| MS.gene47930.t1 | MTR_6g027630 | 35.867 | 421 | 260 | 5 | 35 | 447 | 6 | 424 | 3.25e-80 | 261 |
| MS.gene47930.t1 | MTR_7g086510 | 37.340 | 391 | 238 | 2 | 64 | 447 | 29 | 419 | 4.60e-79 | 259 |
| MS.gene47930.t1 | MTR_6g027680 | 35.897 | 390 | 241 | 3 | 66 | 447 | 39 | 427 | 2.83e-77 | 253 |
| MS.gene47930.t1 | MTR_6g027650 | 36.528 | 386 | 236 | 4 | 70 | 447 | 33 | 417 | 4.10e-77 | 253 |
| MS.gene47930.t1 | MTR_6g027660 | 32.867 | 429 | 275 | 4 | 26 | 447 | 3 | 425 | 5.34e-76 | 251 |
| MS.gene47930.t1 | MTR_7g086610 | 36.554 | 383 | 234 | 3 | 73 | 447 | 32 | 413 | 1.43e-75 | 249 |
| MS.gene47930.t1 | MTR_4g099270 | 44.218 | 294 | 160 | 2 | 164 | 453 | 1 | 294 | 1.95e-75 | 244 |
| MS.gene47930.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 2.93e-61 | 209 |
| MS.gene47930.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 3.42e-61 | 208 |
| MS.gene47930.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 1.10e-60 | 208 |
| MS.gene47930.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 1.28e-60 | 209 |
| MS.gene47930.t1 | MTR_6g027630 | 35.000 | 340 | 212 | 4 | 116 | 447 | 1 | 339 | 7.89e-60 | 206 |
| MS.gene47930.t1 | MTR_6g034535 | 45.070 | 142 | 69 | 3 | 329 | 462 | 49 | 189 | 1.03e-29 | 119 |
| MS.gene47930.t1 | MTR_6g034535 | 41.667 | 96 | 31 | 1 | 99 | 194 | 19 | 89 | 1.38e-14 | 75.1 |
| MS.gene47930.t1 | MTR_6g027670 | 33.544 | 158 | 105 | 0 | 290 | 447 | 1 | 158 | 2.34e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47930.t1 | AT4G21120 | 72.185 | 453 | 124 | 1 | 8 | 458 | 3 | 455 | 0.0 | 696 |
| MS.gene47930.t1 | AT2G34960 | 58.315 | 451 | 187 | 1 | 12 | 462 | 3 | 452 | 0.0 | 548 |
| MS.gene47930.t1 | AT1G17120 | 54.628 | 443 | 201 | 0 | 14 | 456 | 22 | 464 | 1.29e-169 | 491 |
| MS.gene47930.t1 | AT4G21120 | 71.475 | 305 | 87 | 0 | 154 | 458 | 1 | 305 | 1.08e-160 | 462 |
| MS.gene47930.t1 | AT5G04770 | 42.601 | 446 | 246 | 2 | 31 | 466 | 15 | 460 | 3.62e-123 | 372 |
| MS.gene47930.t1 | AT3G10600 | 41.871 | 449 | 251 | 2 | 28 | 466 | 11 | 459 | 1.04e-120 | 365 |
| MS.gene47930.t1 | AT5G04770 | 42.188 | 384 | 212 | 2 | 31 | 404 | 15 | 398 | 7.30e-109 | 329 |
| MS.gene47930.t1 | AT5G36940 | 37.240 | 384 | 234 | 3 | 71 | 447 | 27 | 410 | 1.53e-80 | 262 |
| MS.gene47930.t1 | AT3G03720 | 32.877 | 438 | 284 | 4 | 54 | 483 | 7 | 442 | 1.20e-77 | 254 |
| MS.gene47930.t1 | AT3G10600 | 40.256 | 313 | 177 | 2 | 164 | 466 | 1 | 313 | 3.96e-76 | 246 |
| MS.gene47930.t1 | AT1G58030 | 35.325 | 385 | 242 | 3 | 70 | 447 | 37 | 421 | 1.11e-75 | 250 |
| MS.gene47930.t1 | AT5G04770 | 40.895 | 313 | 175 | 2 | 164 | 466 | 1 | 313 | 3.19e-73 | 238 |
| MS.gene47930.t1 | AT1G05940 | 30.964 | 394 | 254 | 4 | 65 | 446 | 40 | 427 | 6.03e-60 | 205 |
| MS.gene47930.t1 | AT1G05940 | 31.620 | 389 | 258 | 4 | 65 | 446 | 40 | 427 | 2.43e-59 | 204 |
| MS.gene47930.t1 | AT1G05940 | 30.964 | 394 | 254 | 4 | 65 | 446 | 40 | 427 | 6.97e-59 | 204 |
| MS.gene47930.t1 | AT1G05940 | 29.412 | 306 | 200 | 2 | 152 | 446 | 9 | 309 | 4.50e-37 | 142 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGACTTCACTCCTTTC+GGG | 0.224601 | 4.1:+11436653 | MS.gene47930:CDS |
| TTCAATGACTTCACTCCTTT+CGG | 0.234746 | 4.1:+11436652 | MS.gene47930:CDS |
| GTTGCAGAGGGTGGCAAAAT+AGG | 0.283118 | 4.1:-11436413 | None:intergenic |
| TGCAGAGCTGGTGGAGATTA+AGG | 0.299520 | 4.1:+11430448 | MS.gene47930:CDS |
| CTTTGATGCAGTTTCAACTA+TGG | 0.326491 | 4.1:+11436726 | MS.gene47930:CDS |
| CATCTTGACCCTATTGCTAT+TGG | 0.330251 | 4.1:+11436490 | MS.gene47930:CDS |
| TGCTTACTTGAGAGTAGAAA+TGG | 0.338114 | 4.1:+11436306 | MS.gene47930:CDS |
| GACATTCCTATTGGTCTAGT+TGG | 0.348285 | 4.1:+11436775 | MS.gene47930:CDS |
| CACAATATGAACCCTGACTA+TGG | 0.355787 | 4.1:+11436466 | MS.gene47930:CDS |
| GCTAAGTACATCGTTTCATT+AGG | 0.362872 | 4.1:+11436925 | MS.gene47930:CDS |
| ACTAGAGCTCCAATAGCAAT+AGG | 0.367625 | 4.1:-11436499 | None:intergenic |
| ATATTCAAGGAGGATGTTTC+CGG | 0.371568 | 4.1:-11436353 | None:intergenic |
| TCCGGAATATTTGTGCTTAC+CGG | 0.375172 | 4.1:+11430548 | MS.gene47930:CDS |
| GCTGTGGAAATTCCGGTTGC+TGG | 0.377288 | 4.1:+11430668 | MS.gene47930:CDS |
| TAGTGCTGTTGGAATGGATT+GGG | 0.389974 | 4.1:+11436903 | MS.gene47930:CDS |
| TCCGGTAAGCACAAATATTC+CGG | 0.393998 | 4.1:-11430549 | None:intergenic |
| GCTCTTGTTGATGAAAGAAC+TGG | 0.394168 | 4.1:+11437048 | MS.gene47930:CDS |
| GGGTCAAGATGGCCATAGTC+AGG | 0.395099 | 4.1:-11436478 | None:intergenic |
| TGGTGGGACTTGATGTGGTT+TGG | 0.401009 | 4.1:+11430506 | MS.gene47930:CDS |
| TCAAGTGGGGTAACTACAAA+AGG | 0.402045 | 4.1:+11437222 | MS.gene47930:CDS |
| GAGGTGGTTGACGGCGGCGG+AGG | 0.404581 | 4.1:+11430284 | MS.gene47930:CDS |
| GCATGGAATGGTCAGTTCTT+CGG | 0.404608 | 4.1:+11436678 | MS.gene47930:CDS |
| AGAGTTTGCTGTGGAAATTC+CGG | 0.413761 | 4.1:+11430661 | MS.gene47930:CDS |
| ATTATCTTCATAGTAATTGC+TGG | 0.415527 | 4.1:+11436604 | MS.gene47930:CDS |
| TTTGGTATCGGCGCTGTTGT+CGG | 0.416973 | 4.1:+11430524 | MS.gene47930:CDS |
| GGCTAAGGAGCATGCAGGTC+CGG | 0.426445 | 4.1:+11430577 | MS.gene47930:CDS |
| ATTGATCCAACTAGACCAAT+AGG | 0.431013 | 4.1:-11436781 | None:intergenic |
| TTCACTCCTTTCGGGTTGCA+TGG | 0.432881 | 4.1:+11436661 | MS.gene47930:CDS |
| ACTATTATACGAAAATCATC+AGG | 0.434415 | 4.1:-11436442 | None:intergenic |
| TTAGTGCTGTTGGAATGGAT+TGG | 0.443178 | 4.1:+11436902 | MS.gene47930:CDS |
| ATCGGCGCTGTTGTCGGCTC+CGG | 0.443812 | 4.1:+11430530 | MS.gene47930:CDS |
| GACTTGATGTGGTTTGGTAT+CGG | 0.444489 | 4.1:+11430512 | MS.gene47930:CDS |
| CTCCATCGTTGTTATAAAGT+TGG | 0.446505 | 4.1:-11443895 | None:intergenic |
| TGAAGGATCGTTTGTTGAAA+CGG | 0.451718 | 4.1:+11430414 | MS.gene47930:CDS |
| GGAGGAGTCGTTTAAGAGTT+GGG | 0.454594 | 4.1:+11430352 | MS.gene47930:CDS |
| GGAAACACCTCTCCGGTTGA+AGG | 0.459143 | 4.1:+11430397 | MS.gene47930:CDS |
| CACCAGCTCTGCATGATCAC+TGG | 0.459328 | 4.1:-11430438 | None:intergenic |
| GTGTTGTCGTTTGTCATCTC+CGG | 0.461483 | 4.1:+11430605 | MS.gene47930:CDS |
| TCCTTTCGGGTTGCATGGAA+TGG | 0.461688 | 4.1:+11436666 | MS.gene47930:CDS |
| CGGAGGAGTCGTTTAAGAGT+TGG | 0.463490 | 4.1:+11430351 | MS.gene47930:CDS |
| GCAACTGAGAAAGGAGCATC+AGG | 0.468881 | 4.1:-11436877 | None:intergenic |
| GGAGAGGTGGTTGACGGCGG+CGG | 0.471520 | 4.1:+11430281 | MS.gene47930:CDS |
| ATTGAGATCGTAGCATTCAT+AGG | 0.474323 | 4.1:-11437075 | None:intergenic |
| CCTGGTAGAGACATTCCTAT+TGG | 0.474972 | 4.1:+11436766 | MS.gene47930:CDS |
| CAACTCTTAAACGACTCCTC+CGG | 0.477205 | 4.1:-11430350 | None:intergenic |
| GCACTAAAAGCAACTGAGAA+AGG | 0.478246 | 4.1:-11436886 | None:intergenic |
| GCGGTTGGAGAGGTGGTTGA+CGG | 0.480185 | 4.1:+11430275 | MS.gene47930:CDS |
| TCAACAAACGATCCTTCAAC+CGG | 0.481067 | 4.1:-11430409 | None:intergenic |
| CGTTCAACAAACACGTGAAA+AGG | 0.481781 | 4.1:+11443855 | MS.gene47930:CDS |
| GTTGAAGATGGAAGAGCCTT+TGG | 0.481809 | 4.1:-11436551 | None:intergenic |
| AGATGAAGAAGACACTGAAT+TGG | 0.481831 | 4.1:+11430486 | MS.gene47930:CDS |
| TAAGAGAAAGTACCAGCAAC+CGG | 0.485484 | 4.1:-11430680 | None:intergenic |
| GATGTTTCCGGCAGCTATGA+AGG | 0.485872 | 4.1:-11436341 | None:intergenic |
| ATCCTCCTTGAATATGTCAT+AGG | 0.488387 | 4.1:+11436361 | MS.gene47930:CDS |
| AACTCTTAAACGACTCCTCC+GGG | 0.489247 | 4.1:-11430349 | None:intergenic |
| ACGCCGCGGTAGCTCGATCA+TGG | 0.494424 | 4.1:+11436386 | MS.gene47930:CDS |
| AAACTACGGAAAATCTATCA+TGG | 0.496080 | 4.1:+11430376 | MS.gene47930:CDS |
| CCAATAGGAATGTCTCTACC+AGG | 0.501633 | 4.1:-11436766 | None:intergenic |
| TAAGGAGATATTATTCAAGT+GGG | 0.502977 | 4.1:+11437208 | MS.gene47930:CDS |
| CTAGAGCTCCAATAGCAATA+GGG | 0.517338 | 4.1:-11436498 | None:intergenic |
| GTCCAGTGATCATGCAGAGC+TGG | 0.525971 | 4.1:+11430436 | MS.gene47930:CDS |
| GCTTACTTGAGAGTAGAAAT+GGG | 0.528942 | 4.1:+11436307 | MS.gene47930:CDS |
| TTTGTTGCCTTCATAGCTGC+CGG | 0.530560 | 4.1:+11436334 | MS.gene47930:CDS |
| CTTGCAGTTTACAGCACCAA+AGG | 0.534562 | 4.1:+11436535 | MS.gene47930:CDS |
| ATAAAGTAGAAATCGACAAA+AGG | 0.538029 | 4.1:-11437152 | None:intergenic |
| CTATCATGGAAACACCTCTC+CGG | 0.545103 | 4.1:+11430390 | MS.gene47930:CDS |
| TGTGGCTATGTAGTTGAAGA+TGG | 0.545536 | 4.1:-11436563 | None:intergenic |
| CGTTGCCTATGACATATTCA+AGG | 0.547193 | 4.1:-11436366 | None:intergenic |
| CAGGAACATGGCGGTTGGAG+AGG | 0.548690 | 4.1:+11430265 | None:intergenic |
| ACAAACGACAACACAACTGC+CGG | 0.550560 | 4.1:-11430596 | None:intergenic |
| TGATAACAAAGCAGATATAC+CGG | 0.555679 | 4.1:-11430624 | None:intergenic |
| CAGTGATCATGCAGAGCTGG+TGG | 0.560746 | 4.1:+11430439 | MS.gene47930:CDS |
| GTAAACTGCAAGGGCTGTGA+TGG | 0.563586 | 4.1:-11436524 | None:intergenic |
| CATAGTCAGGGTTCATATTG+TGG | 0.563878 | 4.1:-11436465 | None:intergenic |
| TGAAGAAGACACTGAATTGG+TGG | 0.564541 | 4.1:+11430489 | MS.gene47930:CDS |
| CTTTGGTGCTGTAAACTGCA+AGG | 0.567605 | 4.1:-11436534 | None:intergenic |
| GAAAACAGGAACATGGCGGT+TGG | 0.569132 | 4.1:+11430260 | None:intergenic |
| CAAGTGGGGTAACTACAAAA+GGG | 0.569446 | 4.1:+11437223 | MS.gene47930:CDS |
| ATTTGTGCTTACCGGACTTG+AGG | 0.572133 | 4.1:+11430556 | MS.gene47930:CDS |
| CAATAGCAATAGGGTCAAGA+TGG | 0.574940 | 4.1:-11436489 | None:intergenic |
| GCTTACCGGACTTGAGGCTA+AGG | 0.575661 | 4.1:+11430562 | MS.gene47930:CDS |
| TTTAAGAGTTGGGAAAACTA+CGG | 0.577286 | 4.1:+11430362 | MS.gene47930:CDS |
| GTAAGGAGATATTATTCAAG+TGG | 0.577397 | 4.1:+11437207 | MS.gene47930:CDS |
| GAACATGGCGGTTGGAGAGG+TGG | 0.581100 | 4.1:+11430268 | None:intergenic |
| TGAATTGGTGGGACTTGATG+TGG | 0.581666 | 4.1:+11430501 | MS.gene47930:CDS |
| GACCAACTTTATAACAACGA+TGG | 0.582240 | 4.1:+11443893 | MS.gene47930:CDS |
| GTTAGCTAGAATACTAAGAT+CGG | 0.584642 | 4.1:-11437130 | None:intergenic |
| GTTTCATTAGGTGCTTTGAA+AGG | 0.590596 | 4.1:+11436937 | MS.gene47930:CDS |
| GCAGAGGGTGGCAAAATAGG+AGG | 0.598124 | 4.1:-11436410 | None:intergenic |
| GTACTCACATGATGCCACCT+TGG | 0.601374 | 4.1:+11437022 | MS.gene47930:CDS |
| ATGCTCCTTAGCCTCAAGTC+CGG | 0.602400 | 4.1:-11430567 | None:intergenic |
| CTTGAGGCTAAGGAGCATGC+AGG | 0.604195 | 4.1:+11430572 | MS.gene47930:CDS |
| GGCGGAGGAGTACGTAGAAG+AGG | 0.614194 | 4.1:+11430299 | MS.gene47930:CDS |
| GTGGAGATTAAGGCTAGGAG+TGG | 0.614966 | 4.1:+11430458 | MS.gene47930:CDS |
| ACCATTCCATGCAACCCGAA+AGG | 0.616795 | 4.1:-11436667 | None:intergenic |
| TTTGGTGCTGTAAACTGCAA+GGG | 0.618827 | 4.1:-11436533 | None:intergenic |
| GGTCAAGATGGCCATAGTCA+GGG | 0.621031 | 4.1:-11436477 | None:intergenic |
| GAAGAAGACACTGAATTGGT+GGG | 0.623639 | 4.1:+11430490 | MS.gene47930:CDS |
| GTTGGAGAGGTGGTTGACGG+CGG | 0.625310 | 4.1:+11430278 | MS.gene47930:CDS |
| AGCTGGTGGAGATTAAGGCT+AGG | 0.626254 | 4.1:+11430453 | MS.gene47930:CDS |
| AATATAAGCAAAGAAAAGAA+CGG | 0.627891 | 4.1:-11436701 | None:intergenic |
| TGCTTTGAAAGGAATGACAA+CGG | 0.638848 | 4.1:+11436948 | MS.gene47930:CDS |
| CTATTATACGAAAATCATCA+GGG | 0.647038 | 4.1:-11436441 | None:intergenic |
| CATAGCCACAATGTTCCACA+TGG | 0.652539 | 4.1:+11436576 | MS.gene47930:CDS |
| TGGAGATTAAGGCTAGGAGT+GGG | 0.659365 | 4.1:+11430459 | MS.gene47930:CDS |
| TTGTTATACAGAGTTTGCTG+TGG | 0.663078 | 4.1:+11430652 | MS.gene47930:CDS |
| AAGGAGATATTATTCAAGTG+GGG | 0.676082 | 4.1:+11437209 | MS.gene47930:CDS |
| GGTCCATGATCGAGCTACCG+CGG | 0.680216 | 4.1:-11436389 | None:intergenic |
| GACAGCCATGTGGAACATTG+TGG | 0.684798 | 4.1:-11436581 | None:intergenic |
| CAATAGGAATGTCTCTACCA+GGG | 0.688021 | 4.1:-11436765 | None:intergenic |
| AAACGATCCTTCAACCGGAG+AGG | 0.694839 | 4.1:-11430404 | None:intergenic |
| TGAAGATAATGACAGCCATG+TGG | 0.711409 | 4.1:-11436591 | None:intergenic |
| TGCCTATGACATATTCAAGG+AGG | 0.723417 | 4.1:-11436363 | None:intergenic |
| TCAACAAGAGCAAACCAAGG+TGG | 0.728106 | 4.1:-11437036 | None:intergenic |
| TCATCAACAAGAGCAAACCA+AGG | 0.735762 | 4.1:-11437039 | None:intergenic |
| ATATGTCATAGGCAACGCCG+CGG | 0.783643 | 4.1:+11436372 | MS.gene47930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11430272 | 11443922 | 11430272 | ID=MS.gene47930 |
| chr4.1 | mRNA | 11430272 | 11443922 | 11430272 | ID=MS.gene47930.t1;Parent=MS.gene47930 |
| chr4.1 | exon | 11430272 | 11430689 | 11430272 | ID=MS.gene47930.t1.exon1;Parent=MS.gene47930.t1 |
| chr4.1 | CDS | 11430272 | 11430689 | 11430272 | ID=cds.MS.gene47930.t1;Parent=MS.gene47930.t1 |
| chr4.1 | exon | 11436296 | 11437251 | 11436296 | ID=MS.gene47930.t1.exon2;Parent=MS.gene47930.t1 |
| chr4.1 | CDS | 11436296 | 11437251 | 11436296 | ID=cds.MS.gene47930.t1;Parent=MS.gene47930.t1 |
| chr4.1 | exon | 11443839 | 11443922 | 11443839 | ID=MS.gene47930.t1.exon3;Parent=MS.gene47930.t1 |
| chr4.1 | CDS | 11443839 | 11443922 | 11443839 | ID=cds.MS.gene47930.t1;Parent=MS.gene47930.t1 |
| Gene Sequence |
| Protein sequence |
