Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53498.t1 | XP_024628323.1 | 96.8 | 462 | 15 | 0 | 1 | 462 | 1 | 462 | 2.10E-249 | 871.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53498.t1 | Q84MA5 | 72.5 | 451 | 122 | 1 | 6 | 454 | 1 | 451 | 1.6e-189 | 663.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53498.t1 | A0A396GQL0 | 96.8 | 462 | 15 | 0 | 1 | 462 | 1 | 462 | 1.5e-249 | 871.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049259 | MS.gene53498 | 0.845305 | 4.41E-59 | -1.69E-46 |
MS.gene049634 | MS.gene53498 | 0.812576 | 3.95E-51 | -1.69E-46 |
MS.gene04986 | MS.gene53498 | 0.836644 | 8.29E-57 | -1.69E-46 |
MS.gene05015 | MS.gene53498 | 0.814985 | 1.17E-51 | -1.69E-46 |
MS.gene050173 | MS.gene53498 | 0.838234 | 3.25E-57 | -1.69E-46 |
MS.gene050216 | MS.gene53498 | -0.832276 | 1.04E-55 | -1.69E-46 |
MS.gene050381 | MS.gene53498 | 0.851333 | 9.50E-61 | -1.69E-46 |
MS.gene050612 | MS.gene53498 | -0.808712 | 2.71E-50 | -1.69E-46 |
MS.gene050868 | MS.gene53498 | -0.80442 | 2.18E-49 | -1.69E-46 |
MS.gene050871 | MS.gene53498 | -0.806048 | 9.94E-50 | -1.69E-46 |
MS.gene050883 | MS.gene53498 | 0.836772 | 7.69E-57 | -1.69E-46 |
MS.gene051044 | MS.gene53498 | 0.849226 | 3.70E-60 | -1.69E-46 |
MS.gene05104 | MS.gene53498 | 0.801039 | 1.09E-48 | -1.69E-46 |
MS.gene051127 | MS.gene53498 | 0.835024 | 2.13E-56 | -1.69E-46 |
MS.gene051138 | MS.gene53498 | 0.809676 | 1.68E-50 | -1.69E-46 |
MS.gene051946 | MS.gene53498 | 0.810477 | 1.13E-50 | -1.69E-46 |
MS.gene052566 | MS.gene53498 | 0.827262 | 1.72E-54 | -1.69E-46 |
MS.gene053069 | MS.gene53498 | 0.837651 | 4.58E-57 | -1.69E-46 |
MS.gene053420 | MS.gene53498 | 0.833226 | 6.02E-56 | -1.69E-46 |
MS.gene053488 | MS.gene53498 | 0.840308 | 9.40E-58 | -1.69E-46 |
MS.gene053561 | MS.gene53498 | 0.881754 | 1.84E-70 | -1.69E-46 |
MS.gene053826 | MS.gene53498 | 0.808813 | 2.58E-50 | -1.69E-46 |
MS.gene054054 | MS.gene53498 | 0.833957 | 3.96E-56 | -1.69E-46 |
MS.gene054056 | MS.gene53498 | 0.859917 | 2.97E-63 | -1.69E-46 |
MS.gene054708 | MS.gene53498 | 0.836737 | 7.85E-57 | -1.69E-46 |
MS.gene055124 | MS.gene53498 | 0.855985 | 4.37E-62 | -1.69E-46 |
MS.gene055154 | MS.gene53498 | 0.837292 | 5.67E-57 | -1.69E-46 |
MS.gene055202 | MS.gene53498 | 0.807116 | 5.91E-50 | -1.69E-46 |
MS.gene055942 | MS.gene53498 | 0.879185 | 1.53E-69 | -1.69E-46 |
MS.gene056311 | MS.gene53498 | 0.819962 | 8.81E-53 | -1.69E-46 |
MS.gene056504 | MS.gene53498 | -0.816618 | 5.04E-52 | -1.69E-46 |
MS.gene056761 | MS.gene53498 | 0.820782 | 5.72E-53 | -1.69E-46 |
MS.gene057014 | MS.gene53498 | 0.834891 | 2.31E-56 | -1.69E-46 |
MS.gene057549 | MS.gene53498 | 0.804684 | 1.92E-49 | -1.69E-46 |
MS.gene058068 | MS.gene53498 | 0.804698 | 1.91E-49 | -1.69E-46 |
MS.gene058093 | MS.gene53498 | 0.811167 | 8.01E-51 | -1.69E-46 |
MS.gene058099 | MS.gene53498 | 0.843633 | 1.24E-58 | -1.69E-46 |
MS.gene058109 | MS.gene53498 | 0.822827 | 1.92E-53 | -1.69E-46 |
MS.gene058171 | MS.gene53498 | 0.851561 | 8.19E-61 | -1.69E-46 |
MS.gene058173 | MS.gene53498 | 0.839747 | 1.32E-57 | -1.69E-46 |
MS.gene058175 | MS.gene53498 | 0.84901 | 4.25E-60 | -1.69E-46 |
MS.gene058268 | MS.gene53498 | 0.819533 | 1.10E-52 | -1.69E-46 |
MS.gene058269 | MS.gene53498 | 0.808408 | 3.14E-50 | -1.69E-46 |
MS.gene058493 | MS.gene53498 | 0.830152 | 3.45E-55 | -1.69E-46 |
MS.gene058628 | MS.gene53498 | 0.851859 | 6.74E-61 | -1.69E-46 |
MS.gene058629 | MS.gene53498 | 0.848779 | 4.93E-60 | -1.69E-46 |
MS.gene058630 | MS.gene53498 | 0.84055 | 8.13E-58 | -1.69E-46 |
MS.gene058840 | MS.gene53498 | 0.815552 | 8.72E-52 | -1.69E-46 |
MS.gene05884 | MS.gene53498 | 0.831063 | 2.06E-55 | -1.69E-46 |
MS.gene059022 | MS.gene53498 | -0.807452 | 5.02E-50 | -1.69E-46 |
MS.gene059045 | MS.gene53498 | 0.812448 | 4.22E-51 | -1.69E-46 |
MS.gene059690 | MS.gene53498 | 0.846694 | 1.85E-59 | -1.69E-46 |
MS.gene059691 | MS.gene53498 | 0.820835 | 5.56E-53 | -1.69E-46 |
MS.gene059694 | MS.gene53498 | 0.8454 | 4.16E-59 | -1.69E-46 |
MS.gene059697 | MS.gene53498 | 0.84276 | 2.12E-58 | -1.69E-46 |
MS.gene059865 | MS.gene53498 | -0.816993 | 4.15E-52 | -1.69E-46 |
MS.gene059916 | MS.gene53498 | 0.807567 | 4.75E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene49831 | MS.gene53498 | PPI |
MS.gene41790 | MS.gene53498 | PPI |
MS.gene007812 | MS.gene53498 | PPI |
MS.gene007811 | MS.gene53498 | PPI |
MS.gene41795 | MS.gene53498 | PPI |
MS.gene53498 | MS.gene08137 | PPI |
MS.gene53498 | MS.gene00402 | PPI |
MS.gene41792 | MS.gene53498 | PPI |
MS.gene38964 | MS.gene53498 | PPI |
MS.gene042480 | MS.gene53498 | PPI |
MS.gene58674 | MS.gene53498 | PPI |
MS.gene53498 | MS.gene32277 | PPI |
MS.gene38965 | MS.gene53498 | PPI |
MS.gene041367 | MS.gene53498 | PPI |
MS.gene47297 | MS.gene53498 | PPI |
MS.gene032361 | MS.gene53498 | PPI |
MS.gene53498 | MS.gene073450 | PPI |
MS.gene08148 | MS.gene53498 | PPI |
MS.gene042491 | MS.gene53498 | PPI |
MS.gene53498 | MS.gene08144 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53498.t1 | MTR_8g089320 | 93.318 | 449 | 30 | 0 | 14 | 462 | 13 | 461 | 0.0 | 863 |
MS.gene53498.t1 | MTR_8g089360 | 77.551 | 441 | 99 | 0 | 22 | 462 | 26 | 466 | 0.0 | 692 |
MS.gene53498.t1 | MTR_8g089360 | 77.551 | 441 | 99 | 0 | 22 | 462 | 9 | 449 | 0.0 | 692 |
MS.gene53498.t1 | MTR_1g030660 | 69.087 | 427 | 132 | 0 | 29 | 455 | 23 | 449 | 0.0 | 624 |
MS.gene53498.t1 | MTR_8g089340 | 96.805 | 313 | 10 | 0 | 150 | 462 | 1 | 313 | 0.0 | 609 |
MS.gene53498.t1 | MTR_2g035430 | 61.174 | 443 | 172 | 0 | 20 | 462 | 19 | 461 | 0.0 | 585 |
MS.gene53498.t1 | MTR_8g461380 | 51.826 | 438 | 211 | 0 | 20 | 457 | 26 | 463 | 2.11e-159 | 465 |
MS.gene53498.t1 | MTR_1g111740 | 44.519 | 447 | 239 | 1 | 29 | 466 | 6 | 452 | 8.74e-129 | 386 |
MS.gene53498.t1 | MTR_4g099270 | 45.320 | 406 | 218 | 2 | 52 | 453 | 1 | 406 | 2.31e-112 | 343 |
MS.gene53498.t1 | MTR_4g099270 | 45.333 | 375 | 201 | 2 | 35 | 405 | 5 | 379 | 2.39e-108 | 327 |
MS.gene53498.t1 | MTR_8g089342 | 96.403 | 139 | 5 | 0 | 1 | 139 | 1 | 139 | 3.70e-95 | 284 |
MS.gene53498.t1 | MTR_4g099270 | 44.884 | 303 | 163 | 2 | 35 | 333 | 5 | 307 | 1.07e-84 | 263 |
MS.gene53498.t1 | MTR_6g027630 | 35.867 | 421 | 260 | 5 | 35 | 447 | 6 | 424 | 1.18e-80 | 261 |
MS.gene53498.t1 | MTR_6g027630 | 35.867 | 421 | 260 | 5 | 35 | 447 | 6 | 424 | 2.75e-80 | 262 |
MS.gene53498.t1 | MTR_7g086510 | 35.835 | 413 | 257 | 3 | 64 | 468 | 29 | 441 | 3.18e-79 | 259 |
MS.gene53498.t1 | MTR_6g027680 | 35.897 | 390 | 241 | 3 | 66 | 447 | 39 | 427 | 2.55e-77 | 253 |
MS.gene53498.t1 | MTR_6g027650 | 36.528 | 386 | 236 | 4 | 70 | 447 | 33 | 417 | 5.33e-77 | 253 |
MS.gene53498.t1 | MTR_6g027660 | 32.867 | 429 | 275 | 4 | 26 | 447 | 3 | 425 | 5.46e-76 | 250 |
MS.gene53498.t1 | MTR_7g086610 | 36.554 | 383 | 234 | 3 | 73 | 447 | 32 | 413 | 1.74e-75 | 249 |
MS.gene53498.t1 | MTR_4g099270 | 44.218 | 294 | 160 | 2 | 164 | 453 | 1 | 294 | 2.36e-75 | 244 |
MS.gene53498.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 3.68e-61 | 208 |
MS.gene53498.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 3.88e-61 | 209 |
MS.gene53498.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 1.19e-60 | 209 |
MS.gene53498.t1 | MTR_7g007850 | 32.536 | 418 | 257 | 7 | 42 | 447 | 24 | 428 | 1.23e-60 | 208 |
MS.gene53498.t1 | MTR_6g027630 | 35.000 | 340 | 212 | 4 | 116 | 447 | 1 | 339 | 8.76e-60 | 205 |
MS.gene53498.t1 | MTR_6g034535 | 45.985 | 137 | 65 | 3 | 329 | 457 | 49 | 184 | 2.47e-29 | 117 |
MS.gene53498.t1 | MTR_6g034535 | 41.667 | 96 | 31 | 1 | 99 | 194 | 19 | 89 | 1.38e-14 | 75.1 |
MS.gene53498.t1 | MTR_6g027670 | 33.544 | 158 | 105 | 0 | 290 | 447 | 1 | 158 | 2.21e-28 | 114 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53498.t1 | AT4G21120 | 72.185 | 453 | 124 | 1 | 8 | 458 | 3 | 455 | 0.0 | 696 |
MS.gene53498.t1 | AT2G34960 | 59.725 | 437 | 175 | 1 | 12 | 448 | 3 | 438 | 0.0 | 548 |
MS.gene53498.t1 | AT1G17120 | 54.628 | 443 | 201 | 0 | 14 | 456 | 22 | 464 | 2.16e-169 | 490 |
MS.gene53498.t1 | AT4G21120 | 71.475 | 305 | 87 | 0 | 154 | 458 | 1 | 305 | 7.59e-161 | 463 |
MS.gene53498.t1 | AT5G04770 | 42.601 | 446 | 246 | 2 | 31 | 466 | 15 | 460 | 6.34e-123 | 371 |
MS.gene53498.t1 | AT3G10600 | 41.871 | 449 | 251 | 2 | 28 | 466 | 11 | 459 | 1.74e-120 | 365 |
MS.gene53498.t1 | AT5G04770 | 42.188 | 384 | 212 | 2 | 31 | 404 | 15 | 398 | 6.20e-109 | 329 |
MS.gene53498.t1 | AT5G36940 | 37.240 | 384 | 234 | 3 | 71 | 447 | 27 | 410 | 1.62e-80 | 262 |
MS.gene53498.t1 | AT3G03720 | 32.877 | 438 | 284 | 4 | 54 | 483 | 7 | 442 | 2.16e-77 | 253 |
MS.gene53498.t1 | AT3G10600 | 40.256 | 313 | 177 | 2 | 164 | 466 | 1 | 313 | 5.56e-76 | 245 |
MS.gene53498.t1 | AT1G58030 | 35.325 | 385 | 242 | 3 | 70 | 447 | 37 | 421 | 8.44e-76 | 250 |
MS.gene53498.t1 | AT5G04770 | 40.895 | 313 | 175 | 2 | 164 | 466 | 1 | 313 | 4.82e-73 | 238 |
MS.gene53498.t1 | AT1G05940 | 30.964 | 394 | 254 | 4 | 65 | 446 | 40 | 427 | 5.60e-60 | 205 |
MS.gene53498.t1 | AT1G05940 | 31.620 | 389 | 258 | 4 | 65 | 446 | 40 | 427 | 1.93e-59 | 204 |
MS.gene53498.t1 | AT1G05940 | 30.964 | 394 | 254 | 4 | 65 | 446 | 40 | 427 | 5.39e-59 | 204 |
MS.gene53498.t1 | AT1G05940 | 29.412 | 306 | 200 | 2 | 152 | 446 | 9 | 309 | 6.01e-37 | 141 |
Find 117 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATGACTTCACTCCTTTC+GGG | 0.224601 | 4.2:+12234028 | MS.gene53498:CDS |
TTCAATGACTTCACTCCTTT+CGG | 0.234746 | 4.2:+12234027 | MS.gene53498:CDS |
GTTGCAGAGGGTGGCAAAAT+AGG | 0.283118 | 4.2:-12233788 | None:intergenic |
TGCAGAGCTGGTGGAGATTA+AGG | 0.299520 | 4.2:+12228541 | MS.gene53498:CDS |
CTTTGATGCAGTTTCAACTA+TGG | 0.326491 | 4.2:+12234101 | MS.gene53498:CDS |
CATCTTGACCCTATTGCTAT+TGG | 0.330251 | 4.2:+12233865 | MS.gene53498:CDS |
TGCTTACTTGAGAGTAGAAA+TGG | 0.338114 | 4.2:+12233681 | MS.gene53498:CDS |
GACATTCCTATTGGTCTAGT+TGG | 0.348285 | 4.2:+12234150 | MS.gene53498:CDS |
CACAATATGAACCCTGACTA+TGG | 0.355787 | 4.2:+12233841 | MS.gene53498:CDS |
GCTAAGTACATCGTTTCATT+AGG | 0.362872 | 4.2:+12234300 | MS.gene53498:CDS |
ACTAGAGCTCCAATAGCAAT+AGG | 0.367625 | 4.2:-12233874 | None:intergenic |
ATATTCAAGGAGGATGTTTC+CGG | 0.371568 | 4.2:-12233728 | None:intergenic |
TCCGGAATATTTGTGCTTAC+CGG | 0.375172 | 4.2:+12228641 | MS.gene53498:CDS |
GCTGTGGAAATTCCGGTTGC+TGG | 0.377288 | 4.2:+12228761 | MS.gene53498:CDS |
TAGTGCTGTTGGAATGGATT+GGG | 0.389974 | 4.2:+12234278 | MS.gene53498:CDS |
TCCGGTAAGCACAAATATTC+CGG | 0.393998 | 4.2:-12228642 | None:intergenic |
GCTCTTGTTGATGAAAGAAC+TGG | 0.394168 | 4.2:+12234423 | MS.gene53498:CDS |
GGGTCAAGATGGCCATAGTC+AGG | 0.395099 | 4.2:-12233853 | None:intergenic |
TGGTGGGACTTGATGTGGTT+TGG | 0.401009 | 4.2:+12228599 | MS.gene53498:CDS |
TCAAGTGGGGTAACTACAAA+AGG | 0.402045 | 4.2:+12234597 | MS.gene53498:CDS |
GAGGTGGTTGACGGCGGCGG+AGG | 0.404581 | 4.2:+12228377 | MS.gene53498:CDS |
GCATGGAATGGTCAGTTCTT+CGG | 0.404608 | 4.2:+12234053 | MS.gene53498:CDS |
AGAGTTTGCTGTGGAAATTC+CGG | 0.413761 | 4.2:+12228754 | MS.gene53498:CDS |
ATTATCTTCATAGTAATTGC+TGG | 0.415527 | 4.2:+12233979 | MS.gene53498:CDS |
TTTGGTATCGGCGCTGTTGT+CGG | 0.416973 | 4.2:+12228617 | MS.gene53498:CDS |
GGCTAAGGAGCATGCAGGTC+CGG | 0.426445 | 4.2:+12228670 | MS.gene53498:CDS |
ATTGATCCAACTAGACCAAT+AGG | 0.431013 | 4.2:-12234156 | None:intergenic |
TTCACTCCTTTCGGGTTGCA+TGG | 0.432881 | 4.2:+12234036 | MS.gene53498:CDS |
ACTATTATACGAAAATCATC+AGG | 0.434415 | 4.2:-12233817 | None:intergenic |
TTAGTGCTGTTGGAATGGAT+TGG | 0.443178 | 4.2:+12234277 | MS.gene53498:CDS |
ATCGGCGCTGTTGTCGGCTC+CGG | 0.443812 | 4.2:+12228623 | MS.gene53498:CDS |
GACTTGATGTGGTTTGGTAT+CGG | 0.444489 | 4.2:+12228605 | MS.gene53498:CDS |
CTCCATCGTTGTTATAAAGT+TGG | 0.446505 | 4.2:-12241241 | None:intergenic |
TGAAGGATCGTTTGTTGAAA+CGG | 0.451718 | 4.2:+12228507 | MS.gene53498:CDS |
GGAGGAGTCGTTTAAGAGTT+GGG | 0.454594 | 4.2:+12228445 | MS.gene53498:CDS |
GGAAACACCTCTCCGGTTGA+AGG | 0.459143 | 4.2:+12228490 | MS.gene53498:CDS |
CACCAGCTCTGCATGATCAC+TGG | 0.459328 | 4.2:-12228531 | None:intergenic |
GTGTTGTCGTTTGTCATCTC+CGG | 0.461483 | 4.2:+12228698 | MS.gene53498:CDS |
TCCTTTCGGGTTGCATGGAA+TGG | 0.461688 | 4.2:+12234041 | MS.gene53498:CDS |
CGGAGGAGTCGTTTAAGAGT+TGG | 0.463490 | 4.2:+12228444 | MS.gene53498:CDS |
GCAACTGAGAAAGGAGCATC+AGG | 0.468881 | 4.2:-12234252 | None:intergenic |
GGAGAGGTGGTTGACGGCGG+CGG | 0.471520 | 4.2:+12228374 | MS.gene53498:CDS |
ATTGAGATCGTAGCATTCAT+AGG | 0.474323 | 4.2:-12234450 | None:intergenic |
CCTGGTAGAGACATTCCTAT+TGG | 0.474972 | 4.2:+12234141 | MS.gene53498:CDS |
GTGTTTGTTGAACGCTTGTA+TGG | 0.475396 | 4.2:-12241192 | None:intergenic |
CAACTCTTAAACGACTCCTC+CGG | 0.477205 | 4.2:-12228443 | None:intergenic |
GCACTAAAAGCAACTGAGAA+AGG | 0.478246 | 4.2:-12234261 | None:intergenic |
GCGGTTGGAGAGGTGGTTGA+CGG | 0.480185 | 4.2:+12228368 | MS.gene53498:CDS |
TCAACAAACGATCCTTCAAC+CGG | 0.481067 | 4.2:-12228502 | None:intergenic |
CGTTCAACAAACACGTGAAA+AGG | 0.481781 | 4.2:+12241201 | MS.gene53498:CDS |
GTTGAAGATGGAAGAGCCTT+TGG | 0.481809 | 4.2:-12233926 | None:intergenic |
AGATGAAGAAGACACTGAAT+TGG | 0.481831 | 4.2:+12228579 | MS.gene53498:CDS |
TAAGAGAAAGTACCAGCAAC+CGG | 0.485484 | 4.2:-12228773 | None:intergenic |
GATGTTTCCGGCAGCTATGA+AGG | 0.485872 | 4.2:-12233716 | None:intergenic |
ATCCTCCTTGAATATGTCAT+AGG | 0.488387 | 4.2:+12233736 | MS.gene53498:CDS |
AACTCTTAAACGACTCCTCC+GGG | 0.489247 | 4.2:-12228442 | None:intergenic |
ACGCCGCGGTAGCTCGATCA+TGG | 0.494424 | 4.2:+12233761 | MS.gene53498:CDS |
AAACTACGGAAAATCTATCA+TGG | 0.496080 | 4.2:+12228469 | MS.gene53498:CDS |
CCAATAGGAATGTCTCTACC+AGG | 0.501633 | 4.2:-12234141 | None:intergenic |
TAAGGAGATATTATTCAAGT+GGG | 0.502977 | 4.2:+12234583 | MS.gene53498:CDS |
CTAGAGCTCCAATAGCAATA+GGG | 0.517338 | 4.2:-12233873 | None:intergenic |
GTCCAGTGATCATGCAGAGC+TGG | 0.525971 | 4.2:+12228529 | MS.gene53498:CDS |
GCTTACTTGAGAGTAGAAAT+GGG | 0.528942 | 4.2:+12233682 | MS.gene53498:CDS |
TTTGTTGCCTTCATAGCTGC+CGG | 0.530560 | 4.2:+12233709 | MS.gene53498:CDS |
CTTGCAGTTTACAGCACCAA+AGG | 0.534562 | 4.2:+12233910 | MS.gene53498:CDS |
ATAAAGTAGAAATCGACAAA+AGG | 0.538029 | 4.2:-12234527 | None:intergenic |
TGATAACAAAGCAGATATAC+CGG | 0.539801 | 4.2:-12228717 | None:intergenic |
CTATCATGGAAACACCTCTC+CGG | 0.545103 | 4.2:+12228483 | MS.gene53498:CDS |
TGTGGCTATGTAGTTGAAGA+TGG | 0.545536 | 4.2:-12233938 | None:intergenic |
CGTTGCCTATGACATATTCA+AGG | 0.547193 | 4.2:-12233741 | None:intergenic |
CAGGAACATGGCGGTTGGAG+AGG | 0.548690 | 4.2:+12228358 | None:intergenic |
ACAAACGACAACACAACTGC+CGG | 0.550560 | 4.2:-12228689 | None:intergenic |
CAGTGATCATGCAGAGCTGG+TGG | 0.560746 | 4.2:+12228532 | MS.gene53498:CDS |
GTAAACTGCAAGGGCTGTGA+TGG | 0.563586 | 4.2:-12233899 | None:intergenic |
CATAGTCAGGGTTCATATTG+TGG | 0.563878 | 4.2:-12233840 | None:intergenic |
TGAAGAAGACACTGAATTGG+TGG | 0.564541 | 4.2:+12228582 | MS.gene53498:CDS |
CTTTGGTGCTGTAAACTGCA+AGG | 0.567605 | 4.2:-12233909 | None:intergenic |
GAAAACAGGAACATGGCGGT+TGG | 0.569132 | 4.2:+12228353 | None:intergenic |
CAAGTGGGGTAACTACAAAA+GGG | 0.569446 | 4.2:+12234598 | MS.gene53498:CDS |
ATTTGTGCTTACCGGACTTG+AGG | 0.572133 | 4.2:+12228649 | MS.gene53498:CDS |
CAATAGCAATAGGGTCAAGA+TGG | 0.574940 | 4.2:-12233864 | None:intergenic |
GCTTACCGGACTTGAGGCTA+AGG | 0.575661 | 4.2:+12228655 | MS.gene53498:CDS |
TTTAAGAGTTGGGAAAACTA+CGG | 0.577286 | 4.2:+12228455 | MS.gene53498:CDS |
GTAAGGAGATATTATTCAAG+TGG | 0.577397 | 4.2:+12234582 | MS.gene53498:CDS |
GAACATGGCGGTTGGAGAGG+TGG | 0.581100 | 4.2:+12228361 | None:intergenic |
TGAATTGGTGGGACTTGATG+TGG | 0.581666 | 4.2:+12228594 | MS.gene53498:CDS |
GACCAACTTTATAACAACGA+TGG | 0.582240 | 4.2:+12241239 | MS.gene53498:CDS |
GTTAGCTAGAATACTAAGAT+CGG | 0.584642 | 4.2:-12234505 | None:intergenic |
GTTTCATTAGGTGCTTTGAA+AGG | 0.590596 | 4.2:+12234312 | MS.gene53498:CDS |
GCAGAGGGTGGCAAAATAGG+AGG | 0.598124 | 4.2:-12233785 | None:intergenic |
GTACTCACATGATGCCACCT+TGG | 0.601374 | 4.2:+12234397 | MS.gene53498:CDS |
ATGCTCCTTAGCCTCAAGTC+CGG | 0.602400 | 4.2:-12228660 | None:intergenic |
CTTGAGGCTAAGGAGCATGC+AGG | 0.604195 | 4.2:+12228665 | MS.gene53498:CDS |
GGCGGAGGAGTACGTAGAAG+AGG | 0.614194 | 4.2:+12228392 | MS.gene53498:CDS |
GTGGAGATTAAGGCTAGGAG+TGG | 0.614966 | 4.2:+12228551 | MS.gene53498:CDS |
ACCATTCCATGCAACCCGAA+AGG | 0.616795 | 4.2:-12234042 | None:intergenic |
TTTGGTGCTGTAAACTGCAA+GGG | 0.618827 | 4.2:-12233908 | None:intergenic |
GGTCAAGATGGCCATAGTCA+GGG | 0.621031 | 4.2:-12233852 | None:intergenic |
GAAGAAGACACTGAATTGGT+GGG | 0.623639 | 4.2:+12228583 | MS.gene53498:CDS |
GTTGGAGAGGTGGTTGACGG+CGG | 0.625310 | 4.2:+12228371 | MS.gene53498:CDS |
TTGTTATACAGAGTTTGCTG+TGG | 0.625474 | 4.2:+12228745 | MS.gene53498:CDS |
AGCTGGTGGAGATTAAGGCT+AGG | 0.626254 | 4.2:+12228546 | MS.gene53498:CDS |
AATATAAGCAAAGAAAAGAA+CGG | 0.627891 | 4.2:-12234076 | None:intergenic |
TGCTTTGAAAGGAATGACAA+CGG | 0.638848 | 4.2:+12234323 | MS.gene53498:CDS |
CTATTATACGAAAATCATCA+GGG | 0.647038 | 4.2:-12233816 | None:intergenic |
CATAGCCACAATGTTCCACA+TGG | 0.652539 | 4.2:+12233951 | MS.gene53498:CDS |
TGGAGATTAAGGCTAGGAGT+GGG | 0.659365 | 4.2:+12228552 | MS.gene53498:CDS |
AAGGAGATATTATTCAAGTG+GGG | 0.676082 | 4.2:+12234584 | MS.gene53498:CDS |
GGTCCATGATCGAGCTACCG+CGG | 0.680216 | 4.2:-12233764 | None:intergenic |
GACAGCCATGTGGAACATTG+TGG | 0.684798 | 4.2:-12233956 | None:intergenic |
CAATAGGAATGTCTCTACCA+GGG | 0.688021 | 4.2:-12234140 | None:intergenic |
AAACGATCCTTCAACCGGAG+AGG | 0.694839 | 4.2:-12228497 | None:intergenic |
TGAAGATAATGACAGCCATG+TGG | 0.711409 | 4.2:-12233966 | None:intergenic |
TGCCTATGACATATTCAAGG+AGG | 0.723417 | 4.2:-12233738 | None:intergenic |
TCAACAAGAGCAAACCAAGG+TGG | 0.728106 | 4.2:-12234411 | None:intergenic |
TCATCAACAAGAGCAAACCA+AGG | 0.735762 | 4.2:-12234414 | None:intergenic |
ATATGTCATAGGCAACGCCG+CGG | 0.783643 | 4.2:+12233747 | MS.gene53498:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 12228365 | 12241268 | 12228365 | ID=MS.gene53498 |
chr4.2 | mRNA | 12228365 | 12241268 | 12228365 | ID=MS.gene53498.t1;Parent=MS.gene53498 |
chr4.2 | exon | 12228365 | 12228782 | 12228365 | ID=MS.gene53498.t1.exon1;Parent=MS.gene53498.t1 |
chr4.2 | CDS | 12228365 | 12228782 | 12228365 | ID=cds.MS.gene53498.t1;Parent=MS.gene53498.t1 |
chr4.2 | exon | 12233671 | 12234626 | 12233671 | ID=MS.gene53498.t1.exon2;Parent=MS.gene53498.t1 |
chr4.2 | CDS | 12233671 | 12234626 | 12233671 | ID=cds.MS.gene53498.t1;Parent=MS.gene53498.t1 |
chr4.2 | exon | 12241185 | 12241268 | 12241185 | ID=MS.gene53498.t1.exon3;Parent=MS.gene53498.t1 |
chr4.2 | CDS | 12241185 | 12241268 | 12241185 | ID=cds.MS.gene53498.t1;Parent=MS.gene53498.t1 |
Gene Sequence |
Protein sequence |