Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40432.t1 | RHN52506.1 | 98.4 | 316 | 5 | 0 | 1 | 316 | 55 | 370 | 3.10E-169 | 604.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40432.t1 | Q9SX73 | 31.7 | 284 | 166 | 4 | 1 | 284 | 21 | 276 | 1.7e-27 | 124.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40432.t1 | A0A396HGY0 | 98.4 | 316 | 5 | 0 | 1 | 316 | 55 | 370 | 2.2e-169 | 604.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049341 | MS.gene40432 | 0.816281 | 6.00E-52 | -1.69E-46 |
MS.gene049850 | MS.gene40432 | 0.82388 | 1.09E-53 | -1.69E-46 |
MS.gene050020 | MS.gene40432 | 0.853819 | 1.86E-61 | -1.69E-46 |
MS.gene050586 | MS.gene40432 | 0.803145 | 4.01E-49 | -1.69E-46 |
MS.gene050807 | MS.gene40432 | 0.833962 | 3.94E-56 | -1.69E-46 |
MS.gene050808 | MS.gene40432 | 0.804643 | 1.96E-49 | -1.69E-46 |
MS.gene050901 | MS.gene40432 | 0.805254 | 1.46E-49 | -1.69E-46 |
MS.gene051199 | MS.gene40432 | 0.801634 | 8.21E-49 | -1.69E-46 |
MS.gene05157 | MS.gene40432 | 0.918991 | 7.86E-87 | -1.69E-46 |
MS.gene051719 | MS.gene40432 | 0.83523 | 1.89E-56 | -1.69E-46 |
MS.gene051720 | MS.gene40432 | 0.814611 | 1.41E-51 | -1.69E-46 |
MS.gene051744 | MS.gene40432 | 0.800059 | 1.72E-48 | -1.69E-46 |
MS.gene052020 | MS.gene40432 | 0.811142 | 8.12E-51 | -1.69E-46 |
MS.gene052133 | MS.gene40432 | 0.814148 | 1.79E-51 | -1.69E-46 |
MS.gene052516 | MS.gene40432 | 0.82319 | 1.58E-53 | -1.69E-46 |
MS.gene052665 | MS.gene40432 | 0.829313 | 5.52E-55 | -1.69E-46 |
MS.gene052732 | MS.gene40432 | 0.810038 | 1.41E-50 | -1.69E-46 |
MS.gene053074 | MS.gene40432 | 0.815449 | 9.19E-52 | -1.69E-46 |
MS.gene053144 | MS.gene40432 | 0.801809 | 7.56E-49 | -1.69E-46 |
MS.gene053174 | MS.gene40432 | 0.833016 | 6.79E-56 | -1.69E-46 |
MS.gene053226 | MS.gene40432 | 0.808455 | 3.07E-50 | -1.69E-46 |
MS.gene053563 | MS.gene40432 | 0.807588 | 4.70E-50 | -1.69E-46 |
MS.gene054550 | MS.gene40432 | 0.830879 | 2.29E-55 | -1.69E-46 |
MS.gene054584 | MS.gene40432 | 0.814702 | 1.35E-51 | -1.69E-46 |
MS.gene05462 | MS.gene40432 | 0.813048 | 3.12E-51 | -1.69E-46 |
MS.gene055144 | MS.gene40432 | 0.800971 | 1.12E-48 | -1.69E-46 |
MS.gene055465 | MS.gene40432 | 0.830464 | 2.89E-55 | -1.69E-46 |
MS.gene055466 | MS.gene40432 | 0.828285 | 9.79E-55 | -1.69E-46 |
MS.gene055468 | MS.gene40432 | 0.807376 | 5.21E-50 | -1.69E-46 |
MS.gene055469 | MS.gene40432 | 0.814499 | 1.49E-51 | -1.69E-46 |
MS.gene055512 | MS.gene40432 | 0.82376 | 1.16E-53 | -1.69E-46 |
MS.gene055890 | MS.gene40432 | 0.807664 | 4.53E-50 | -1.69E-46 |
MS.gene056005 | MS.gene40432 | 0.810019 | 1.42E-50 | -1.69E-46 |
MS.gene056507 | MS.gene40432 | 0.806927 | 6.48E-50 | -1.69E-46 |
MS.gene056553 | MS.gene40432 | 0.818638 | 1.77E-52 | -1.69E-46 |
MS.gene057915 | MS.gene40432 | 0.817146 | 3.84E-52 | -1.69E-46 |
MS.gene058168 | MS.gene40432 | 0.802267 | 6.08E-49 | -1.69E-46 |
MS.gene059006 | MS.gene40432 | 0.808538 | 2.95E-50 | -1.69E-46 |
MS.gene05978 | MS.gene40432 | 0.821715 | 3.48E-53 | -1.69E-46 |
MS.gene059937 | MS.gene40432 | 0.800036 | 1.74E-48 | -1.69E-46 |
MS.gene060194 | MS.gene40432 | 0.806874 | 6.66E-50 | -1.69E-46 |
MS.gene060587 | MS.gene40432 | 0.837905 | 3.94E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene42493 | MS.gene40432 | PPI |
MS.gene40432 | MS.gene05157 | PPI |
MS.gene05157 | MS.gene40432 | PPI |
MS.gene041717 | MS.gene40432 | PPI |
MS.gene92477 | MS.gene40432 | PPI |
MS.gene40432 | MS.gene42493 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40432.t1 | MTR_6g081040 | 94.937 | 316 | 16 | 0 | 1 | 316 | 55 | 370 | 0.0 | 588 |
MS.gene40432.t1 | MTR_6g081040 | 94.937 | 316 | 16 | 0 | 1 | 316 | 12 | 327 | 0.0 | 587 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40432.t1 | AT1G48405 | 33.333 | 237 | 134 | 2 | 1 | 237 | 21 | 233 | 8.97e-35 | 128 |
MS.gene40432.t1 | AT3G17680 | 41.892 | 222 | 116 | 4 | 7 | 223 | 29 | 242 | 5.26e-31 | 119 |
MS.gene40432.t1 | AT3G17680 | 41.892 | 222 | 116 | 4 | 7 | 223 | 61 | 274 | 1.06e-30 | 119 |
MS.gene40432.t1 | AT3G17680 | 41.892 | 222 | 116 | 4 | 7 | 223 | 73 | 286 | 1.40e-30 | 118 |
Find 52 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAATGTTGCCAATGATTA+AGG | 0.116655 | 6.2:+76239052 | MS.gene40432:CDS |
TCCTTCCACTTAAACCTTCT+AGG | 0.254299 | 6.2:-76239575 | None:intergenic |
CAAATGTTGCCAATGATTAA+GGG | 0.371657 | 6.2:+76239053 | MS.gene40432:CDS |
AAAGTAGTTGAGGTCTCTTT+TGG | 0.378216 | 6.2:-76238836 | None:intergenic |
TCTTCTCCAAACCATGTATC+TGG | 0.388286 | 6.2:-76239427 | None:intergenic |
CAAGTTTCAACTTTGGAAGA+AGG | 0.406416 | 6.2:+76238954 | MS.gene40432:CDS |
TCAAGGCCAGATACATGGTT+TGG | 0.410594 | 6.2:+76239421 | MS.gene40432:CDS |
TTCAAATGGAGAAGCCTAGA+AGG | 0.411732 | 6.2:+76239561 | MS.gene40432:CDS |
GAAGAGTTTGCTTGAGGTGT+TGG | 0.416910 | 6.2:+76239205 | MS.gene40432:CDS |
AGGATGAAAATGTTGGCAAT+TGG | 0.428892 | 6.2:+76238756 | None:intergenic |
CTCTTCACAAGTTTCAACTT+TGG | 0.429231 | 6.2:+76238947 | MS.gene40432:CDS |
TGGTGGTGAAGGGTTAGCTT+TGG | 0.430299 | 6.2:+76239529 | MS.gene40432:CDS |
AGGAAGAAGGAAATTCTTCT+AGG | 0.441661 | 6.2:+76239594 | MS.gene40432:CDS |
GATCAAGAAGAAGTTATTAG+TGG | 0.443016 | 6.2:+76238984 | MS.gene40432:CDS |
GAGTTATAGAGTTAATAGTT+TGG | 0.443249 | 6.2:+76239268 | MS.gene40432:CDS |
GAAAGTATTGCGAGTCTTCG+AGG | 0.458677 | 6.2:+76239168 | MS.gene40432:CDS |
GAGTCAAGTTGATTCGGATA+TGG | 0.463764 | 6.2:+76239010 | MS.gene40432:CDS |
TGGTGTGAGTCAAGTTGATT+CGG | 0.464121 | 6.2:+76239004 | MS.gene40432:CDS |
GGAAGAAAGGATGAAAATGT+TGG | 0.467904 | 6.2:+76238749 | None:intergenic |
TTTGGAAGTTCATGTTCAAA+TGG | 0.473753 | 6.2:+76239547 | MS.gene40432:CDS |
ATCGGCAACAAAGGGAAGAA+TGG | 0.498887 | 6.2:+76239509 | MS.gene40432:CDS |
ACCATGGAACCCTTAATCAT+TGG | 0.501015 | 6.2:-76239062 | None:intergenic |
GATCTTCAAGGCCAGATACA+TGG | 0.502154 | 6.2:+76239416 | MS.gene40432:CDS |
AGAAGCCTAGAAGGTTTAAG+TGG | 0.505030 | 6.2:+76239570 | MS.gene40432:CDS |
GGTTCATGAGGTTGGTGTCA+TGG | 0.507161 | 6.2:+76239142 | MS.gene40432:CDS |
AGAAGAGAGAGTCAAGAAAA+CGG | 0.507190 | 6.2:+76239479 | MS.gene40432:CDS |
AGGTTTAAGTGGAAGGAAGA+AGG | 0.509088 | 6.2:+76239581 | MS.gene40432:CDS |
CTTCTGCATGATTTGTACAA+TGG | 0.516625 | 6.2:+76238861 | MS.gene40432:CDS |
AGATACATGGTTTGGAGAAG+AGG | 0.525980 | 6.2:+76239429 | MS.gene40432:CDS |
GCCTAGAAGGTTTAAGTGGA+AGG | 0.532394 | 6.2:+76239574 | MS.gene40432:CDS |
ACAAGTGAAGAAGAAGAAGA+AGG | 0.536387 | 6.2:+76238780 | MS.gene40432:CDS |
GCCAATGATTAAGGGTTCCA+TGG | 0.537395 | 6.2:+76239061 | MS.gene40432:CDS |
AAAGGGAAGAATGGTGGTGA+AGG | 0.547748 | 6.2:+76239518 | MS.gene40432:CDS |
AAGTGTTTGTATATATCGAT+CGG | 0.552375 | 6.2:-76238898 | None:intergenic |
AACATGGACTTGCTGCTATG+TGG | 0.560577 | 6.2:+76239665 | MS.gene40432:CDS |
GATCAAGATCAAGCGCAAGT+TGG | 0.564528 | 6.2:-76239695 | None:intergenic |
CAAAGAGCTTGCGTCCGAGT+CGG | 0.566207 | 6.2:+76239301 | MS.gene40432:CDS |
AAGGGAAGAATGGTGGTGAA+GGG | 0.583396 | 6.2:+76239519 | MS.gene40432:CDS |
TGCAGAAGTGAAAGTAGTTG+AGG | 0.584459 | 6.2:-76238846 | None:intergenic |
ACATGGACTTGCTGCTATGT+GGG | 0.588821 | 6.2:+76239666 | MS.gene40432:CDS |
AGGAAGATTGAAGATCTTCA+AGG | 0.589114 | 6.2:+76239404 | MS.gene40432:CDS |
CTAAGTGTGTGCTGAAGATG+AGG | 0.598254 | 6.2:+76239354 | MS.gene40432:CDS |
GTTACAGAAGAGTTTGCTTG+AGG | 0.610285 | 6.2:+76239199 | MS.gene40432:CDS |
CACACACTTAGCTAACTCAC+CGG | 0.626155 | 6.2:-76239342 | None:intergenic |
GTACTGTTGAATGAGAATGC+TGG | 0.626374 | 6.2:+76239242 | MS.gene40432:CDS |
AATTGCATCAACATCAACCA+TGG | 0.628092 | 6.2:-76239078 | None:intergenic |
TCTCTTTATGAAAACCGACT+CGG | 0.628900 | 6.2:-76239315 | None:intergenic |
GGAACAAGGAGTATTATGAG+AGG | 0.665037 | 6.2:+76239450 | MS.gene40432:CDS |
GGCAACAAAGGGAAGAATGG+TGG | 0.678048 | 6.2:+76239512 | MS.gene40432:CDS |
TGGTTTGGAGAAGAGGAACA+AGG | 0.704148 | 6.2:+76239436 | MS.gene40432:CDS |
GTGTGTGCTGAAGATGAGGG+AGG | 0.735654 | 6.2:+76239358 | MS.gene40432:CDS |
TAAGTGTGTGCTGAAGATGA+GGG | 0.745974 | 6.2:+76239355 | MS.gene40432:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAGTGTTTGTATATATCGAT+CGG | - | chr6.2:76238901-76238920 | None:intergenic | 25.0% |
! | GAGTTATAGAGTTAATAGTT+TGG | + | chr6.2:76239268-76239287 | MS.gene40432:CDS | 25.0% |
!! | ATAGAGTTTTTCTATTGCAT+AGG | + | chr6.2:76239384-76239403 | MS.gene40432:CDS | 25.0% |
!!! | GAATGTTATGTGTGATTTTT+TGG | + | chr6.2:76239121-76239140 | MS.gene40432:CDS | 25.0% |
ACAAATGTTGCCAATGATTA+AGG | + | chr6.2:76239052-76239071 | MS.gene40432:CDS | 30.0% | |
CAAATGTTGCCAATGATTAA+GGG | + | chr6.2:76239053-76239072 | MS.gene40432:CDS | 30.0% | |
GATCAAGAAGAAGTTATTAG+TGG | + | chr6.2:76238984-76239003 | MS.gene40432:CDS | 30.0% | |
TTTGGAAGTTCATGTTCAAA+TGG | + | chr6.2:76239547-76239566 | MS.gene40432:CDS | 30.0% | |
! | AAGAATTTTGCTGGGAAAAA+AGG | + | chr6.2:76239617-76239636 | MS.gene40432:CDS | 30.0% |
! | GTTTTCATAAAGAGAAAAGC+CGG | + | chr6.2:76239323-76239342 | MS.gene40432:CDS | 30.0% |
!!! | CAAGAAAACGGTAGTTTTAT+CGG | + | chr6.2:76239491-76239510 | MS.gene40432:CDS | 30.0% |
AATTGCATCAACATCAACCA+TGG | - | chr6.2:76239081-76239100 | None:intergenic | 35.0% | |
ACAAGTGAAGAAGAAGAAGA+AGG | + | chr6.2:76238780-76238799 | MS.gene40432:CDS | 35.0% | |
AGAAGAGAGAGTCAAGAAAA+CGG | + | chr6.2:76239479-76239498 | MS.gene40432:CDS | 35.0% | |
AGGAAGAAGGAAATTCTTCT+AGG | + | chr6.2:76239594-76239613 | MS.gene40432:CDS | 35.0% | |
AGGAAGATTGAAGATCTTCA+AGG | + | chr6.2:76239404-76239423 | MS.gene40432:CDS | 35.0% | |
CTCTTCACAAGTTTCAACTT+TGG | + | chr6.2:76238947-76238966 | MS.gene40432:CDS | 35.0% | |
GGAAAAAAGGTCATAGTTTG+TGG | + | chr6.2:76239630-76239649 | MS.gene40432:CDS | 35.0% | |
GTGGAAAAAGTTGAAGAACA+TGG | + | chr6.2:76239649-76239668 | MS.gene40432:CDS | 35.0% | |
TCTCTTTATGAAAACCGACT+CGG | - | chr6.2:76239318-76239337 | None:intergenic | 35.0% | |
! | AAAGTAGTTGAGGTCTCTTT+TGG | - | chr6.2:76238839-76238858 | None:intergenic | 35.0% |
! | CAAGTTTCAACTTTGGAAGA+AGG | + | chr6.2:76238954-76238973 | MS.gene40432:CDS | 35.0% |
! | CTTCTGCATGATTTGTACAA+TGG | + | chr6.2:76238861-76238880 | MS.gene40432:CDS | 35.0% |
!! | CTTCTAGGAAGAATTTTGCT+GGG | + | chr6.2:76239609-76239628 | MS.gene40432:CDS | 35.0% |
!! | TCTTCTAGGAAGAATTTTGC+TGG | + | chr6.2:76239608-76239627 | MS.gene40432:CDS | 35.0% |
!!! | GATTTTTTGGTTCATGAGGT+TGG | + | chr6.2:76239134-76239153 | MS.gene40432:CDS | 35.0% |
!!! | GTAGTTTTATCGGCAACAAA+GGG | + | chr6.2:76239501-76239520 | MS.gene40432:CDS | 35.0% |
!!! | GTGTGATTTTTTGGTTCATG+AGG | + | chr6.2:76239130-76239149 | MS.gene40432:CDS | 35.0% |
ACCATGGAACCCTTAATCAT+TGG | - | chr6.2:76239065-76239084 | None:intergenic | 40.0% | |
AGAAGCCTAGAAGGTTTAAG+TGG | + | chr6.2:76239570-76239589 | MS.gene40432:CDS | 40.0% | |
AGGTTTAAGTGGAAGGAAGA+AGG | + | chr6.2:76239581-76239600 | MS.gene40432:CDS | 40.0% | |
GTACTGTTGAATGAGAATGC+TGG | + | chr6.2:76239242-76239261 | MS.gene40432:CDS | 40.0% | |
TAAGTGTGTGCTGAAGATGA+GGG | + | chr6.2:76239355-76239374 | MS.gene40432:CDS | 40.0% | |
TCCTTCCACTTAAACCTTCT+AGG | - | chr6.2:76239578-76239597 | None:intergenic | 40.0% | |
TCTTCTCCAAACCATGTATC+TGG | - | chr6.2:76239430-76239449 | None:intergenic | 40.0% | |
TGCAGAAGTGAAAGTAGTTG+AGG | - | chr6.2:76238849-76238868 | None:intergenic | 40.0% | |
TTCAAATGGAGAAGCCTAGA+AGG | + | chr6.2:76239561-76239580 | MS.gene40432:CDS | 40.0% | |
! | AGATACATGGTTTGGAGAAG+AGG | + | chr6.2:76239429-76239448 | MS.gene40432:CDS | 40.0% |
! | GTTACAGAAGAGTTTGCTTG+AGG | + | chr6.2:76239199-76239218 | MS.gene40432:CDS | 40.0% |
!! | GAGTCAAGTTGATTCGGATA+TGG | + | chr6.2:76239010-76239029 | MS.gene40432:CDS | 40.0% |
!! | GGAACAAGGAGTATTATGAG+AGG | + | chr6.2:76239450-76239469 | MS.gene40432:CDS | 40.0% |
!! | TGGTGTGAGTCAAGTTGATT+CGG | + | chr6.2:76239004-76239023 | MS.gene40432:CDS | 40.0% |
!!! | GGTAGTTTTATCGGCAACAA+AGG | + | chr6.2:76239500-76239519 | MS.gene40432:CDS | 40.0% |
ATCGGCAACAAAGGGAAGAA+TGG | + | chr6.2:76239509-76239528 | MS.gene40432:CDS | 45.0% | |
CACACACTTAGCTAACTCAC+CGG | - | chr6.2:76239345-76239364 | None:intergenic | 45.0% | |
CTAAGTGTGTGCTGAAGATG+AGG | + | chr6.2:76239354-76239373 | MS.gene40432:CDS | 45.0% | |
GATCTTCAAGGCCAGATACA+TGG | + | chr6.2:76239416-76239435 | MS.gene40432:CDS | 45.0% | |
GCCAATGATTAAGGGTTCCA+TGG | + | chr6.2:76239061-76239080 | MS.gene40432:CDS | 45.0% | |
GCCTAGAAGGTTTAAGTGGA+AGG | + | chr6.2:76239574-76239593 | MS.gene40432:CDS | 45.0% | |
TCAAGGCCAGATACATGGTT+TGG | + | chr6.2:76239421-76239440 | MS.gene40432:CDS | 45.0% | |
! | AAAGGGAAGAATGGTGGTGA+AGG | + | chr6.2:76239518-76239537 | MS.gene40432:CDS | 45.0% |
! | AAGGGAAGAATGGTGGTGAA+GGG | + | chr6.2:76239519-76239538 | MS.gene40432:CDS | 45.0% |
! | GAAGAGTTTGCTTGAGGTGT+TGG | + | chr6.2:76239205-76239224 | MS.gene40432:CDS | 45.0% |
! | TGGTTTGGAGAAGAGGAACA+AGG | + | chr6.2:76239436-76239455 | MS.gene40432:CDS | 45.0% |
!! | AACATGGACTTGCTGCTATG+TGG | + | chr6.2:76239665-76239684 | MS.gene40432:CDS | 45.0% |
!! | ACATGGACTTGCTGCTATGT+GGG | + | chr6.2:76239666-76239685 | MS.gene40432:CDS | 45.0% |
!! | GAAAGTATTGCGAGTCTTCG+AGG | + | chr6.2:76239168-76239187 | MS.gene40432:CDS | 45.0% |
GGCAACAAAGGGAAGAATGG+TGG | + | chr6.2:76239512-76239531 | MS.gene40432:CDS | 50.0% | |
!! | GGTTCATGAGGTTGGTGTCA+TGG | + | chr6.2:76239142-76239161 | MS.gene40432:CDS | 50.0% |
!! | TGGTGGTGAAGGGTTAGCTT+TGG | + | chr6.2:76239529-76239548 | MS.gene40432:CDS | 50.0% |
CAAAGAGCTTGCGTCCGAGT+CGG | + | chr6.2:76239301-76239320 | MS.gene40432:CDS | 55.0% | |
GTGTGTGCTGAAGATGAGGG+AGG | + | chr6.2:76239358-76239377 | MS.gene40432:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 76238759 | 76239709 | 76238759 | ID=MS.gene40432 |
chr6.2 | mRNA | 76238759 | 76239709 | 76238759 | ID=MS.gene40432.t1;Parent=MS.gene40432 |
chr6.2 | exon | 76238759 | 76239709 | 76238759 | ID=MS.gene40432.t1.exon1;Parent=MS.gene40432.t1 |
chr6.2 | CDS | 76238759 | 76239709 | 76238759 | ID=cds.MS.gene40432.t1;Parent=MS.gene40432.t1 |
Gene Sequence |
Protein sequence |