Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45732.t1 | KEH30386.1 | 98.5 | 599 | 9 | 0 | 1 | 599 | 1 | 599 | 0.00E+00 | 1179.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45732.t1 | Q84RR2 | 63.8 | 580 | 186 | 8 | 31 | 598 | 25 | 592 | 4.2e-216 | 752.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45732.t1 | A0A072ULZ9 | 98.5 | 599 | 9 | 0 | 1 | 599 | 1 | 599 | 0.0e+00 | 1179.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene45732 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene45732 | 0.830108 | 3.54E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene45732 | 0.83905 | 2.00E-57 | -1.69E-46 |
| MS.gene049801 | MS.gene45732 | 0.819498 | 1.13E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene45732 | 0.844292 | 8.27E-59 | -1.69E-46 |
| MS.gene050105 | MS.gene45732 | 0.809025 | 2.32E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene45732 | 0.809831 | 1.56E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene45732 | 0.809112 | 2.22E-50 | -1.69E-46 |
| MS.gene051066 | MS.gene45732 | 0.803292 | 3.74E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene45732 | 0.809167 | 2.16E-50 | -1.69E-46 |
| MS.gene051209 | MS.gene45732 | 0.829205 | 5.86E-55 | -1.69E-46 |
| MS.gene051543 | MS.gene45732 | 0.803497 | 3.39E-49 | -1.69E-46 |
| MS.gene051597 | MS.gene45732 | 0.815432 | 9.27E-52 | -1.69E-46 |
| MS.gene052674 | MS.gene45732 | 0.81432 | 1.64E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene45732 | 0.814988 | 1.16E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene45732 | 0.818464 | 1.93E-52 | -1.69E-46 |
| MS.gene052776 | MS.gene45732 | 0.810394 | 1.18E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene45732 | 0.820951 | 5.23E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene45732 | 0.824842 | 6.48E-54 | -1.69E-46 |
| MS.gene053166 | MS.gene45732 | 0.803404 | 3.54E-49 | -1.69E-46 |
| MS.gene053575 | MS.gene45732 | 0.804972 | 1.67E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene45732 | 0.803064 | 4.17E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene45732 | 0.80092 | 1.15E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene45732 | 0.816501 | 5.35E-52 | -1.69E-46 |
| MS.gene055724 | MS.gene45732 | 0.81304 | 3.13E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene45732 | 0.818094 | 2.35E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene45732 | 0.833975 | 3.92E-56 | -1.69E-46 |
| MS.gene056480 | MS.gene45732 | 0.804279 | 2.33E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene45732 | 0.804108 | 2.53E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene45732 | 0.805756 | 1.14E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene45732 | 0.829773 | 4.27E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene45732 | 0.817467 | 3.25E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene45732 | 0.801331 | 9.47E-49 | -1.69E-46 |
| MS.gene057600 | MS.gene45732 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene057855 | MS.gene45732 | 0.800059 | 1.72E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene45732 | 0.83102 | 2.11E-55 | -1.69E-46 |
| MS.gene058081 | MS.gene45732 | 0.802518 | 5.40E-49 | -1.69E-46 |
| MS.gene058097 | MS.gene45732 | 0.805356 | 1.39E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene45732 | 0.83989 | 1.21E-57 | -1.69E-46 |
| MS.gene058595 | MS.gene45732 | 0.801547 | 8.55E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene45732 | 0.828582 | 8.30E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene45732 | 0.832778 | 7.78E-56 | -1.69E-46 |
| MS.gene059439 | MS.gene45732 | 0.806502 | 7.97E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene45732 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene45732 | 0.803832 | 2.89E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene45732 | 0.812501 | 4.11E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene45732 | 0.806276 | 8.90E-50 | -1.69E-46 |
| MS.gene060520 | MS.gene45732 | 0.826874 | 2.14E-54 | -1.69E-46 |
| MS.gene060527 | MS.gene45732 | 0.803321 | 3.69E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene45732 | 0.849565 | 2.98E-60 | -1.69E-46 |
| MS.gene060935 | MS.gene45732 | 0.833094 | 6.50E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene45732 | 0.837386 | 5.36E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45732.t1 | MTR_4g068940 | 98.664 | 599 | 8 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1234 |
| MS.gene45732.t1 | MTR_4g068940 | 95.993 | 599 | 8 | 1 | 1 | 599 | 1 | 583 | 0.0 | 1193 |
| MS.gene45732.t1 | MTR_4g066650 | 30.143 | 491 | 303 | 12 | 48 | 520 | 61 | 529 | 2.18e-61 | 214 |
| MS.gene45732.t1 | MTR_2g098580 | 28.717 | 491 | 310 | 12 | 48 | 520 | 71 | 539 | 4.01e-60 | 211 |
| MS.gene45732.t1 | MTR_3g065380 | 28.776 | 490 | 306 | 12 | 49 | 520 | 57 | 521 | 6.08e-58 | 204 |
| MS.gene45732.t1 | MTR_3g065410 | 29.142 | 501 | 309 | 16 | 49 | 533 | 55 | 525 | 1.17e-54 | 195 |
| MS.gene45732.t1 | MTR_4g075010 | 27.119 | 472 | 260 | 16 | 48 | 495 | 7 | 418 | 1.61e-38 | 150 |
| MS.gene45732.t1 | MTR_5g097670 | 29.721 | 323 | 195 | 8 | 214 | 520 | 4 | 310 | 1.21e-37 | 142 |
| MS.gene45732.t1 | MTR_4g075030 | 26.158 | 367 | 209 | 13 | 19 | 356 | 7 | 340 | 1.07e-30 | 124 |
| MS.gene45732.t1 | MTR_5g029700 | 24.000 | 225 | 120 | 6 | 126 | 318 | 322 | 527 | 2.19e-13 | 73.6 |
| MS.gene45732.t1 | MTR_3g014030 | 28.378 | 222 | 139 | 9 | 100 | 315 | 1502 | 1709 | 2.23e-13 | 74.3 |
| MS.gene45732.t1 | MTR_1g037750 | 28.378 | 222 | 139 | 9 | 100 | 315 | 205 | 412 | 2.61e-13 | 72.8 |
| MS.gene45732.t1 | MTR_4g063815 | 27.706 | 231 | 149 | 9 | 111 | 330 | 35 | 258 | 6.46e-12 | 66.6 |
| MS.gene45732.t1 | MTR_3g086770 | 30.256 | 195 | 124 | 7 | 126 | 315 | 1510 | 1697 | 2.93e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45732.t1 | AT4G34370 | 61.626 | 615 | 199 | 11 | 3 | 599 | 2 | 597 | 0.0 | 770 |
| MS.gene45732.t1 | AT2G16090 | 61.967 | 610 | 202 | 10 | 1 | 598 | 1 | 592 | 0.0 | 764 |
| MS.gene45732.t1 | AT2G16090 | 62.013 | 616 | 186 | 11 | 1 | 598 | 1 | 586 | 0.0 | 759 |
| MS.gene45732.t1 | AT2G16090 | 66.357 | 538 | 163 | 8 | 1 | 533 | 1 | 525 | 0.0 | 736 |
| MS.gene45732.t1 | AT2G16090 | 63.787 | 544 | 174 | 7 | 66 | 598 | 1 | 532 | 0.0 | 714 |
| MS.gene45732.t1 | AT2G16090 | 69.068 | 472 | 135 | 5 | 66 | 533 | 1 | 465 | 0.0 | 686 |
| MS.gene45732.t1 | AT3G27710 | 59.921 | 509 | 190 | 8 | 29 | 533 | 26 | 524 | 0.0 | 632 |
| MS.gene45732.t1 | AT4G34370 | 65.393 | 445 | 123 | 9 | 171 | 599 | 1 | 430 | 0.0 | 588 |
| MS.gene45732.t1 | AT3G27720 | 63.450 | 342 | 119 | 4 | 194 | 533 | 147 | 484 | 2.43e-160 | 468 |
| MS.gene45732.t1 | AT2G31510 | 29.658 | 526 | 327 | 13 | 2 | 509 | 18 | 518 | 7.87e-66 | 225 |
| MS.gene45732.t1 | AT2G31510 | 30.879 | 489 | 300 | 12 | 2 | 477 | 18 | 481 | 4.45e-64 | 219 |
| MS.gene45732.t1 | AT2G31510 | 29.764 | 467 | 289 | 11 | 60 | 509 | 2 | 446 | 1.92e-63 | 217 |
| MS.gene45732.t1 | AT2G31770 | 27.379 | 515 | 334 | 15 | 14 | 509 | 3 | 496 | 4.63e-63 | 217 |
| MS.gene45732.t1 | AT1G05890 | 29.457 | 516 | 317 | 14 | 14 | 509 | 23 | 511 | 9.97e-63 | 216 |
| MS.gene45732.t1 | AT1G05890 | 28.958 | 480 | 298 | 11 | 48 | 509 | 99 | 553 | 2.86e-60 | 211 |
| MS.gene45732.t1 | AT2G31780 | 31.250 | 416 | 255 | 13 | 24 | 430 | 42 | 435 | 1.55e-59 | 205 |
| MS.gene45732.t1 | AT2G31760 | 29.216 | 510 | 321 | 17 | 14 | 509 | 3 | 486 | 4.31e-59 | 206 |
| MS.gene45732.t1 | AT1G65430 | 28.442 | 552 | 339 | 16 | 2 | 526 | 4 | 526 | 3.39e-58 | 205 |
| MS.gene45732.t1 | AT5G08730 | 26.233 | 446 | 284 | 16 | 48 | 481 | 10 | 422 | 5.63e-32 | 130 |
| MS.gene45732.t1 | AT1G05880 | 22.153 | 483 | 328 | 13 | 46 | 514 | 39 | 487 | 4.98e-27 | 115 |
| MS.gene45732.t1 | AT1G05880 | 23.007 | 439 | 295 | 12 | 46 | 475 | 39 | 443 | 7.66e-26 | 111 |
| MS.gene45732.t1 | AT1G05880 | 22.107 | 484 | 320 | 13 | 46 | 514 | 39 | 480 | 3.12e-25 | 109 |
| MS.gene45732.t1 | AT5G63750 | 24.266 | 511 | 303 | 20 | 48 | 501 | 11 | 494 | 1.26e-19 | 93.2 |
| MS.gene45732.t1 | AT5G63730 | 27.719 | 285 | 181 | 11 | 48 | 315 | 11 | 287 | 3.08e-17 | 85.5 |
| MS.gene45732.t1 | AT5G63760 | 30.088 | 226 | 122 | 12 | 120 | 315 | 20 | 239 | 1.33e-15 | 80.1 |
| MS.gene45732.t1 | AT5G63760 | 30.088 | 226 | 122 | 12 | 120 | 315 | 20 | 239 | 1.33e-15 | 80.1 |
| MS.gene45732.t1 | AT5G63760 | 30.088 | 226 | 122 | 12 | 120 | 315 | 20 | 239 | 1.33e-15 | 80.1 |
| MS.gene45732.t1 | AT3G14250 | 29.864 | 221 | 128 | 11 | 125 | 333 | 94 | 299 | 2.99e-15 | 77.4 |
| MS.gene45732.t1 | AT1G32340 | 26.360 | 239 | 142 | 7 | 109 | 323 | 361 | 589 | 1.27e-14 | 77.8 |
| MS.gene45732.t1 | AT5G10370 | 26.633 | 199 | 137 | 6 | 120 | 315 | 1558 | 1750 | 2.54e-13 | 73.9 |
| MS.gene45732.t1 | AT2G26135 | 30.882 | 204 | 123 | 9 | 126 | 320 | 153 | 347 | 1.09e-12 | 70.5 |
| MS.gene45732.t1 | AT4G01020 | 26.154 | 195 | 131 | 7 | 126 | 315 | 1561 | 1747 | 2.51e-12 | 70.9 |
| MS.gene45732.t1 | AT2G26130 | 29.327 | 208 | 122 | 9 | 126 | 320 | 159 | 354 | 1.00e-11 | 67.8 |
| MS.gene45732.t1 | AT5G63760 | 33.835 | 133 | 71 | 7 | 199 | 315 | 2 | 133 | 1.69e-11 | 66.6 |
Find 106 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTACTTTCAAGCTTAA+AGG | 0.141595 | 4.4:-38584873 | None:intergenic |
| TTTGAAGTTTATGTAGAAAA+AGG | 0.183191 | 4.4:+38583365 | MS.gene45732:CDS |
| CATAAGTTTAGCATATTTAA+AGG | 0.183354 | 4.4:-38585191 | None:intergenic |
| GTGCATCGACAATGATTTAT+TGG | 0.189539 | 4.4:+38585361 | MS.gene45732:CDS |
| TCTATGCCCTTTGATTTATA+TGG | 0.230617 | 4.4:-38585419 | None:intergenic |
| CTTTAAATATGCTAAACTTA+TGG | 0.276659 | 4.4:+38585192 | MS.gene45732:CDS |
| TCATACTTCTCTGCCATATC+AGG | 0.290091 | 4.4:-38584116 | None:intergenic |
| ATGAATCAGAAACTGTTAAT+TGG | 0.291470 | 4.4:+38584354 | MS.gene45732:CDS |
| GTATTTGCGGCCAAGCATTT+TGG | 0.310007 | 4.4:+38584453 | MS.gene45732:CDS |
| CTTCAGAGCTTCCAGTTTGT+TGG | 0.314668 | 4.4:+38585447 | MS.gene45732:CDS |
| GTGGGAATGCAATTCGTGTT+GGG | 0.340005 | 4.4:+38584207 | MS.gene45732:CDS |
| GATTATAGCTGGGTAAATAA+TGG | 0.340008 | 4.4:+38584968 | MS.gene45732:CDS |
| CGTGTTTGATGTGGGAGCTC+TGG | 0.345421 | 4.4:+38584315 | MS.gene45732:CDS |
| GCTTTATTGCTCCAACAAAC+TGG | 0.371482 | 4.4:-38585458 | None:intergenic |
| TTCTATTTCTCCCGCTGCTC+AGG | 0.383503 | 4.4:+38582284 | MS.gene45732:CDS |
| CTCCCACATCAAACACGAAC+AGG | 0.384521 | 4.4:-38584309 | None:intergenic |
| TCTCTTATTGTCTTCAATGT+AGG | 0.390159 | 4.4:-38584156 | None:intergenic |
| TAATGCTTATTTATCATCGT+TGG | 0.400236 | 4.4:+38583327 | MS.gene45732:CDS |
| AAGACAATAAGAGAGTTAAA+TGG | 0.413854 | 4.4:+38584165 | MS.gene45732:CDS |
| CTGAACTCAATGATTATAGC+TGG | 0.414125 | 4.4:+38584957 | MS.gene45732:CDS |
| CTGGCAAGTTTAGATCAAAA+AGG | 0.415849 | 4.4:-38586245 | None:intergenic |
| TGGTAGAAAGCACCCTGATA+TGG | 0.419498 | 4.4:+38584103 | MS.gene45732:CDS |
| ATTCTTGTTGCTTCATCACT+AGG | 0.422785 | 4.4:-38583494 | None:intergenic |
| GGATCAACAGCAGCAGTTAG+AGG | 0.425749 | 4.4:+38585123 | MS.gene45732:CDS |
| GCATTTATGTTTGCTCAGGC+TGG | 0.428355 | 4.4:+38583392 | MS.gene45732:CDS |
| AATGCTTATTTATCATCGTT+GGG | 0.432983 | 4.4:+38583328 | MS.gene45732:CDS |
| TTCCCACAATGTGGCGTGCT+CGG | 0.435694 | 4.4:-38584191 | None:intergenic |
| CGGTTTGTGGCACTTTGGAC+AGG | 0.440450 | 4.4:-38584396 | None:intergenic |
| TTCTTCTTCGACGTCTTGAT+CGG | 0.440913 | 4.4:-38582208 | None:intergenic |
| CTACTGGCCGTGATCATACT+TGG | 0.451535 | 4.4:+38584729 | MS.gene45732:CDS |
| GAAGGCATTTATGTTTGCTC+AGG | 0.464709 | 4.4:+38583388 | MS.gene45732:CDS |
| TGGTTGTGTGGTGGAGCTAC+TGG | 0.468440 | 4.4:+38584713 | MS.gene45732:CDS |
| ATGCTAAACTTATGGAGATA+AGG | 0.473847 | 4.4:+38585200 | MS.gene45732:CDS |
| TATTTATCATCGTTGGGATG+TGG | 0.476215 | 4.4:+38583334 | MS.gene45732:CDS |
| GGTACATGCATTATCATAAC+CGG | 0.485862 | 4.4:+38584831 | MS.gene45732:CDS |
| ACAAATGTCAGAAGCTGAAA+GGG | 0.487072 | 4.4:+38585078 | MS.gene45732:CDS |
| AGAAATGTTACTGAGTGAAA+AGG | 0.489380 | 4.4:+38586122 | MS.gene45732:intron |
| GGGCAAAGAGGGATCTCTAT+AGG | 0.491647 | 4.4:+38584810 | MS.gene45732:CDS |
| AATGAAACAGAACTTATTTG+AGG | 0.494812 | 4.4:+38585102 | MS.gene45732:CDS |
| TAGTGATGAAGCAACAAGAA+TGG | 0.496144 | 4.4:+38583496 | MS.gene45732:CDS |
| GAGCAATAAAGCTGACAATA+CGG | 0.496778 | 4.4:+38585469 | MS.gene45732:CDS |
| CGTAAGCGTGCCAGAGAAGA+AGG | 0.497557 | 4.4:+38586219 | MS.gene45732:CDS |
| GTCCGAGCACGCCACATTGT+GGG | 0.497626 | 4.4:+38584189 | MS.gene45732:CDS |
| CATACTTGGTCAAGTATAGC+TGG | 0.500185 | 4.4:+38584743 | MS.gene45732:CDS |
| CTGTCCAAAGTGCCACAAAC+CGG | 0.503790 | 4.4:+38584397 | MS.gene45732:CDS |
| TCAAGAGAAATCAGCTGAGC+GGG | 0.505415 | 4.4:+38584790 | MS.gene45732:CDS |
| AATTTGGTTAGCTGTATTTG+CGG | 0.507682 | 4.4:+38584440 | MS.gene45732:CDS |
| GGAGGACTTGCGCAGAGTGA+TGG | 0.509123 | 4.4:+38583271 | MS.gene45732:CDS |
| GTGTTTGATGTGGGAGCTCT+GGG | 0.510947 | 4.4:+38584316 | MS.gene45732:CDS |
| ATCAGCTGAGCGGGCAAAGA+GGG | 0.511484 | 4.4:+38584799 | MS.gene45732:CDS |
| ATATCATGACTCTGGCTCGC+TGG | 0.511966 | 4.4:+38583430 | MS.gene45732:CDS |
| TCCACCGGTTTGTGGCACTT+TGG | 0.517904 | 4.4:-38584401 | None:intergenic |
| TGGGAATGCAATTCGTGTTG+GGG | 0.518482 | 4.4:+38584208 | MS.gene45732:CDS |
| TATAGCACCATATAAATCAA+AGG | 0.523492 | 4.4:+38585412 | MS.gene45732:CDS |
| GCTGTCGTAAGAACTTTACT+TGG | 0.526473 | 4.4:+38584083 | MS.gene45732:CDS |
| AACAAATGTCAGAAGCTGAA+AGG | 0.528651 | 4.4:+38585077 | MS.gene45732:CDS |
| AAGGAACGAACCTGAGCAGC+GGG | 0.529592 | 4.4:-38582294 | None:intergenic |
| ATAGCACCATATAAATCAAA+GGG | 0.529766 | 4.4:+38585413 | MS.gene45732:CDS |
| TTTCTGTCTACAACTTCAGC+TGG | 0.532183 | 4.4:-38586264 | None:intergenic |
| TTATTGGATTCTATTAATCT+CGG | 0.532615 | 4.4:+38585377 | MS.gene45732:CDS |
| TGTGGGAATGCAATTCGTGT+TGG | 0.535934 | 4.4:+38584206 | MS.gene45732:CDS |
| CTGTACAGTTGGTTGTGTGG+TGG | 0.539491 | 4.4:+38584704 | MS.gene45732:intron |
| AGCAATAAAGCTGACAATAC+GGG | 0.541090 | 4.4:+38585470 | MS.gene45732:CDS |
| GGAATACTCACCAAAATGCT+TGG | 0.544949 | 4.4:-38584463 | None:intergenic |
| CCCCTGTTCGTGTTTGATGT+GGG | 0.548928 | 4.4:+38584307 | MS.gene45732:CDS |
| GACACAGCATTTCTTTGTCA+AGG | 0.556593 | 4.4:+38583995 | MS.gene45732:CDS |
| AGTCTGTGTGAGCTTTATAC+CGG | 0.559653 | 4.4:-38584850 | None:intergenic |
| GGAATCACTGATAGTTGCAC+AGG | 0.560936 | 4.4:+38583152 | MS.gene45732:CDS |
| TGTCCGAGCACGCCACATTG+TGG | 0.561018 | 4.4:+38584188 | MS.gene45732:CDS |
| CATACTTCTCTGCCATATCA+GGG | 0.565467 | 4.4:-38584115 | None:intergenic |
| TGTATATATGCTGCAAGCGT+AGG | 0.573507 | 4.4:+38586150 | MS.gene45732:CDS |
| TGCTCAGGCTGGTGTTAGTG+TGG | 0.573538 | 4.4:+38583403 | MS.gene45732:CDS |
| GCATATTTAAAGGTGTCGAA+AGG | 0.577111 | 4.4:-38585181 | None:intergenic |
| TGAACTCAATGATTATAGCT+GGG | 0.579869 | 4.4:+38584958 | MS.gene45732:CDS |
| AAACTGAAAGATATCATACA+AGG | 0.580876 | 4.4:+38584890 | MS.gene45732:CDS |
| TTTCTGTACAGTTGGTTGTG+TGG | 0.585716 | 4.4:+38584701 | MS.gene45732:intron |
| AAGTAAACGCATCAGATGCA+TGG | 0.588761 | 4.4:+38584031 | MS.gene45732:CDS |
| GTGGATGAATATCATGACTC+TGG | 0.592583 | 4.4:+38583422 | MS.gene45732:CDS |
| CTTAATCAGTCAGAAGAGAG+TGG | 0.594834 | 4.4:+38586186 | MS.gene45732:CDS |
| CAAACGCATATGAATATGAA+AGG | 0.599466 | 4.4:-38585021 | None:intergenic |
| ATCAAGAGAAATCAGCTGAG+CGG | 0.602973 | 4.4:+38584789 | MS.gene45732:CDS |
| TTCTTTGTCAAGGTAAACGA+GGG | 0.608990 | 4.4:+38584005 | MS.gene45732:CDS |
| GGAGTATTGATAATCTTCAT+CGG | 0.611843 | 4.4:-38582187 | None:intergenic |
| AGTAATGTGTGAAATTTGCA+TGG | 0.612800 | 4.4:+38583463 | MS.gene45732:CDS |
| TCCCACATCAAACACGAACA+GGG | 0.614215 | 4.4:-38584308 | None:intergenic |
| TACTTGACCAAGTATGATCA+CGG | 0.628425 | 4.4:-38584736 | None:intergenic |
| ATTTATATGGTGCTATACTG+TGG | 0.634097 | 4.4:-38585406 | None:intergenic |
| AGTATAGCTGGTCACAGCTG+TGG | 0.637100 | 4.4:+38584755 | MS.gene45732:CDS |
| TCCAAAGTGCCACAAACCGG+TGG | 0.641185 | 4.4:+38584400 | MS.gene45732:CDS |
| AGCAGCGGGAGAAATAGAAG+AGG | 0.649500 | 4.4:-38582280 | None:intergenic |
| AATCAGCTGAGCGGGCAAAG+AGG | 0.650192 | 4.4:+38584798 | MS.gene45732:CDS |
| GGGAATGCAATTCGTGTTGG+GGG | 0.651226 | 4.4:+38584209 | MS.gene45732:CDS |
| CCCACATCAAACACGAACAG+GGG | 0.653511 | 4.4:-38584307 | None:intergenic |
| GAAGGAACGAACCTGAGCAG+CGG | 0.661272 | 4.4:-38582295 | None:intergenic |
| TTTCTTTGTCAAGGTAAACG+AGG | 0.661438 | 4.4:+38584004 | MS.gene45732:CDS |
| CGAATTGCATTCCCACAATG+TGG | 0.661456 | 4.4:-38584200 | None:intergenic |
| GGGTGATGATGACTTGTGTG+AGG | 0.663158 | 4.4:+38584229 | MS.gene45732:CDS |
| ACACTTGCAGGTGATTACGA+AGG | 0.665460 | 4.4:+38583131 | MS.gene45732:intron |
| CCACATCAAACACGAACAGG+GGG | 0.666654 | 4.4:-38584306 | None:intergenic |
| AACTGAAAGATATCATACAA+GGG | 0.667662 | 4.4:+38584891 | MS.gene45732:CDS |
| GCAGCGGGAGAAATAGAAGA+GGG | 0.669244 | 4.4:-38582279 | None:intergenic |
| GTATTGATAATCTTCATCGG+TGG | 0.686161 | 4.4:-38582184 | None:intergenic |
| GTCGAAGAAGAAGATTCCGT+CGG | 0.701998 | 4.4:+38582219 | MS.gene45732:CDS |
| AAGCGTGCCAGAGAAGAAGG+TGG | 0.717667 | 4.4:+38586222 | MS.gene45732:CDS |
| TGTGAGGTAGAATGTTCATG+TGG | 0.730408 | 4.4:+38584245 | MS.gene45732:CDS |
| GAAGCAACAAGAATGGACTG+TGG | 0.810129 | 4.4:+38583503 | MS.gene45732:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAATAAAAAAAT+AGG | - | chr4.4:38583885-38583904 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAACACTAAC+AGG | - | chr4.4:38583546-38583565 | None:intergenic | 15.0% |
| !! | AAGAAACATAAATTATTTCA+TGG | - | chr4.4:38584539-38584558 | None:intergenic | 15.0% |
| !! | ACTCAAGATATAAATTAATT+TGG | - | chr4.4:38586032-38586051 | None:intergenic | 15.0% |
| !! | ATCATCGAATAAAAAAAAAA+AGG | - | chr4.4:38582343-38582362 | None:intergenic | 15.0% |
| !! | ATGAAATAATTTATGTTTCT+TGG | + | chr4.4:38584538-38584557 | MS.gene45732:intron | 15.0% |
| !! | TTTGTGTTTATATAGTTTAT+TGG | + | chr4.4:38582813-38582832 | MS.gene45732:intron | 15.0% |
| !!! | ATTTTGAAGAAGAAAAAATA+AGG | - | chr4.4:38583586-38583605 | None:intergenic | 15.0% |
| !!! | TTTTGAAGAAGAAAAAATAA+GGG | - | chr4.4:38583585-38583604 | None:intergenic | 15.0% |
| !! | CATAAGTTTAGCATATTTAA+AGG | - | chr4.4:38585194-38585213 | None:intergenic | 20.0% |
| !! | CTTTAAATATGCTAAACTTA+TGG | + | chr4.4:38585192-38585211 | MS.gene45732:CDS | 20.0% |
| !! | TAATAAAACCACTGTTAATT+GGG | + | chr4.4:38585857-38585876 | MS.gene45732:intron | 20.0% |
| !! | TAATATTAACCATTAGATGT+TGG | - | chr4.4:38583033-38583052 | None:intergenic | 20.0% |
| !! | TGGAAAAATTACATTAACTT+TGG | + | chr4.4:38583952-38583971 | MS.gene45732:intron | 20.0% |
| !! | TTAATAAAACCACTGTTAAT+TGG | + | chr4.4:38585856-38585875 | MS.gene45732:intron | 20.0% |
| !! | TTATTGGATTCTATTAATCT+CGG | + | chr4.4:38585377-38585396 | MS.gene45732:CDS | 20.0% |
| !! | TTGAAGTTTATGTAGAAAAA+GGG | + | chr4.4:38583366-38583385 | MS.gene45732:CDS | 20.0% |
| !! | TTGTTGTATGTATCATAATT+TGG | + | chr4.4:38584631-38584650 | MS.gene45732:intron | 20.0% |
| !! | TTTCTTCTTCAAAATTTCAT+CGG | + | chr4.4:38583591-38583610 | MS.gene45732:intron | 20.0% |
| !!! | AAGTAATGGAAAATTAATCA+TGG | - | chr4.4:38585756-38585775 | None:intergenic | 20.0% |
| !!! | TGTTTTGTATCATTGTTTTT+GGG | + | chr4.4:38582565-38582584 | MS.gene45732:intron | 20.0% |
| !!! | TTGTTTTATGGTTTTATTGA+AGG | + | chr4.4:38582913-38582932 | MS.gene45732:intron | 20.0% |
| !!! | TTGTTTTGTATCATTGTTTT+TGG | + | chr4.4:38582564-38582583 | MS.gene45732:intron | 20.0% |
| !!! | TTTGAAGTTTATGTAGAAAA+AGG | + | chr4.4:38583365-38583384 | MS.gene45732:CDS | 20.0% |
| !!! | TTTTTTTTTTGTTGAGTTTC+TGG | + | chr4.4:38582540-38582559 | MS.gene45732:intron | 20.0% |
| ! | AAAATGGGCAAAATTATTAC+TGG | - | chr4.4:38584684-38584703 | None:intergenic | 25.0% |
| ! | AAACTGAAAGATATCATACA+AGG | + | chr4.4:38584890-38584909 | MS.gene45732:CDS | 25.0% |
| ! | AACTGAAAGATATCATACAA+GGG | + | chr4.4:38584891-38584910 | MS.gene45732:CDS | 25.0% |
| ! | AAGACAATAAGAGAGTTAAA+TGG | + | chr4.4:38584165-38584184 | MS.gene45732:CDS | 25.0% |
| ! | AAGATTCATATAACCAATCA+AGG | + | chr4.4:38583832-38583851 | MS.gene45732:intron | 25.0% |
| ! | AATGAAAATGAAAAGGTTGA+AGG | - | chr4.4:38582316-38582335 | None:intergenic | 25.0% |
| ! | AATGAAACAGAACTTATTTG+AGG | + | chr4.4:38585102-38585121 | MS.gene45732:CDS | 25.0% |
| ! | AATGCTTATTTATCATCGTT+GGG | + | chr4.4:38583328-38583347 | MS.gene45732:CDS | 25.0% |
| ! | ACAGATTCTTATGTAGTTTA+GGG | - | chr4.4:38582611-38582630 | None:intergenic | 25.0% |
| ! | AGGTTTGAATGAAAATGAAA+AGG | - | chr4.4:38582323-38582342 | None:intergenic | 25.0% |
| ! | ATAGCACCATATAAATCAAA+GGG | + | chr4.4:38585413-38585432 | MS.gene45732:CDS | 25.0% |
| ! | ATGAATCAGAAACTGTTAAT+TGG | + | chr4.4:38584354-38584373 | MS.gene45732:CDS | 25.0% |
| ! | ATTACAGAAGAAAAACATTC+TGG | + | chr4.4:38584923-38584942 | MS.gene45732:CDS | 25.0% |
| ! | ATTCTTGGTGAATTTATTCA+AGG | + | chr4.4:38582722-38582741 | MS.gene45732:intron | 25.0% |
| ! | GAATTCTTAATGTTACATGA+TGG | + | chr4.4:38583628-38583647 | MS.gene45732:intron | 25.0% |
| ! | GTTATATTAAGAGAGAAAGA+GGG | + | chr4.4:38582478-38582497 | MS.gene45732:intron | 25.0% |
| ! | TAAATGTCTATTGTTGGATT+TGG | + | chr4.4:38585493-38585512 | MS.gene45732:intron | 25.0% |
| ! | TAATGCTTATTTATCATCGT+TGG | + | chr4.4:38583327-38583346 | MS.gene45732:CDS | 25.0% |
| ! | TATAGCACCATATAAATCAA+AGG | + | chr4.4:38585412-38585431 | MS.gene45732:CDS | 25.0% |
| ! | TATATGCACAATACAAGTAA+TGG | - | chr4.4:38585770-38585789 | None:intergenic | 25.0% |
| ! | TATGTATCATAATTTGGATC+AGG | + | chr4.4:38584637-38584656 | MS.gene45732:intron | 25.0% |
| ! | TGAATTCTTATATTGAATGC+AGG | + | chr4.4:38585333-38585352 | MS.gene45732:intron | 25.0% |
| ! | TGAGAATATATAATGCAAGA+AGG | - | chr4.4:38584487-38584506 | None:intergenic | 25.0% |
| ! | TGTTATATTAAGAGAGAAAG+AGG | + | chr4.4:38582477-38582496 | MS.gene45732:intron | 25.0% |
| ! | TTTCATGATTGAATTGTGTA+TGG | + | chr4.4:38585891-38585910 | MS.gene45732:intron | 25.0% |
| !!! | ACAGTGGTTTTATTAAAATC+AGG | - | chr4.4:38585852-38585871 | None:intergenic | 25.0% |
| !!! | CAGTGGTTTTATTAAAATCA+GGG | - | chr4.4:38585851-38585870 | None:intergenic | 25.0% |
| !!! | TGAAAAACTCTCTAAGATTT+TGG | + | chr4.4:38585153-38585172 | MS.gene45732:CDS | 25.0% |
| AAAAATGTCAGTTCAGAGAA+AGG | - | chr4.4:38583095-38583114 | None:intergenic | 30.0% | |
| ACTTGTATTGTGCATATATG+TGG | + | chr4.4:38585772-38585791 | MS.gene45732:intron | 30.0% | |
| AGAAATGTTACTGAGTGAAA+AGG | + | chr4.4:38586122-38586141 | MS.gene45732:intron | 30.0% | |
| AGTAATGTGTGAAATTTGCA+TGG | + | chr4.4:38583463-38583482 | MS.gene45732:CDS | 30.0% | |
| AGTTTATGTAGAAAAAGGGA+AGG | + | chr4.4:38583370-38583389 | MS.gene45732:CDS | 30.0% | |
| ATGCTAAACTTATGGAGATA+AGG | + | chr4.4:38585200-38585219 | MS.gene45732:CDS | 30.0% | |
| CAAACGCATATGAATATGAA+AGG | - | chr4.4:38585024-38585043 | None:intergenic | 30.0% | |
| CAGTTTACTTTCAAGCTTAA+AGG | - | chr4.4:38584876-38584895 | None:intergenic | 30.0% | |
| CCCTAAGTATATGAAATTGA+CGG | + | chr4.4:38582639-38582658 | MS.gene45732:intron | 30.0% | |
| CCGTCAATTTCATATACTTA+GGG | - | chr4.4:38582642-38582661 | None:intergenic | 30.0% | |
| CCTAAGTATATGAAATTGAC+GGG | + | chr4.4:38582640-38582659 | MS.gene45732:intron | 30.0% | |
| CTAAGTATATGAAATTGACG+GGG | + | chr4.4:38582641-38582660 | MS.gene45732:intron | 30.0% | |
| CTTGTATTGTGCATATATGT+GGG | + | chr4.4:38585773-38585792 | MS.gene45732:intron | 30.0% | |
| GAAAAATGGTGGTTGTAATT+TGG | + | chr4.4:38584424-38584443 | MS.gene45732:CDS | 30.0% | |
| GACAGATTCTTATGTAGTTT+AGG | - | chr4.4:38582612-38582631 | None:intergenic | 30.0% | |
| GATTATAGCTGGGTAAATAA+TGG | + | chr4.4:38584968-38584987 | MS.gene45732:CDS | 30.0% | |
| GTTGTTGTAACATGAAAAAG+TGG | + | chr4.4:38586004-38586023 | MS.gene45732:intron | 30.0% | |
| TAAGTATATGAAATTGACGG+GGG | + | chr4.4:38582642-38582661 | MS.gene45732:intron | 30.0% | |
| TATGTGAAGTTGAATCGTTT+GGG | + | chr4.4:38583068-38583087 | MS.gene45732:intron | 30.0% | |
| TATGTGCATTCATATACAGA+AGG | + | chr4.4:38583250-38583269 | MS.gene45732:intron | 30.0% | |
| TCTCTTATTGTCTTCAATGT+AGG | - | chr4.4:38584159-38584178 | None:intergenic | 30.0% | |
| TGAACTCAATGATTATAGCT+GGG | + | chr4.4:38584958-38584977 | MS.gene45732:CDS | 30.0% | |
| TGAATGAATATATTGCATCG+TGG | + | chr4.4:38585917-38585936 | MS.gene45732:intron | 30.0% | |
| TTAAAATCAGGGTGAAATCA+AGG | - | chr4.4:38585840-38585859 | None:intergenic | 30.0% | |
| TTATGTGAAGTTGAATCGTT+TGG | + | chr4.4:38583067-38583086 | MS.gene45732:intron | 30.0% | |
| TTCTGTATATGAATGCACAT+AGG | - | chr4.4:38583251-38583270 | None:intergenic | 30.0% | |
| ! | AATTTGGTTAGCTGTATTTG+CGG | + | chr4.4:38584440-38584459 | MS.gene45732:CDS | 30.0% |
| ! | AATTTTTCCAGTCTTTCATG+AGG | - | chr4.4:38583942-38583961 | None:intergenic | 30.0% |
| ! | ATTTTTCCAGTCTTTCATGA+GGG | - | chr4.4:38583941-38583960 | None:intergenic | 30.0% |
| ! | TCATGGAAAAGTATAATGAC+CGG | - | chr4.4:38584522-38584541 | None:intergenic | 30.0% |
| ! | TCTATGCCCTTTGATTTATA+TGG | - | chr4.4:38585422-38585441 | None:intergenic | 30.0% |
| ! | TTAGTGGGTAACATTAAGAA+TGG | + | chr4.4:38583663-38583682 | MS.gene45732:intron | 30.0% |
| ! | TTCATGAGGGTGTAAAAAAA+AGG | - | chr4.4:38583928-38583947 | None:intergenic | 30.0% |
| ! | TTTTCGTGGTTTATAGTCTA+TGG | + | chr4.4:38583003-38583022 | MS.gene45732:intron | 30.0% |
| !! | ATTTATATGGTGCTATACTG+TGG | - | chr4.4:38585409-38585428 | None:intergenic | 30.0% |
| !! | GGAGTATTGATAATCTTCAT+CGG | - | chr4.4:38582190-38582209 | None:intergenic | 30.0% |
| !! | TTTTCTTCAGTTTGACTTTG+TGG | + | chr4.4:38586093-38586112 | MS.gene45732:intron | 30.0% |
| !!! | AAAACTCTCTAAGATTTTGG+AGG | + | chr4.4:38585156-38585175 | MS.gene45732:CDS | 30.0% |
| !!! | GTCGTTGTAATTTTTTTTCG+TGG | + | chr4.4:38582989-38583008 | MS.gene45732:intron | 30.0% |
| !!! | TGGTTGTTGTTGTTGTTTTA+TGG | + | chr4.4:38582901-38582920 | MS.gene45732:intron | 30.0% |
| AAAAAATAGGCCATGTCATC+CGG | - | chr4.4:38583872-38583891 | None:intergenic | 35.0% | |
| AAAACCACTGTTAATTGGGA+TGG | + | chr4.4:38585861-38585880 | MS.gene45732:intron | 35.0% | |
| AAATCCATCCCAATTAACAG+TGG | - | chr4.4:38585868-38585887 | None:intergenic | 35.0% | |
| AACAAATGTCAGAAGCTGAA+AGG | + | chr4.4:38585077-38585096 | MS.gene45732:CDS | 35.0% | |
| ACAAATGTCAGAAGCTGAAA+GGG | + | chr4.4:38585078-38585097 | MS.gene45732:CDS | 35.0% | |
| ACAACCAACTGTACAGAAAA+TGG | - | chr4.4:38584700-38584719 | None:intergenic | 35.0% | |
| ACCTGTTATCAGTGACTAAT+TGG | + | chr4.4:38585607-38585626 | MS.gene45732:intron | 35.0% | |
| ACTAAGTGAGATCATCTACA+TGG | - | chr4.4:38582870-38582889 | None:intergenic | 35.0% | |
| AGCAATAAAGCTGACAATAC+GGG | + | chr4.4:38585470-38585489 | MS.gene45732:CDS | 35.0% | |
| ATGTAGATGATCTCACTTAG+TGG | + | chr4.4:38582869-38582888 | MS.gene45732:intron | 35.0% | |
| CAACCAACTGTACAGAAAAT+GGG | - | chr4.4:38584699-38584718 | None:intergenic | 35.0% | |
| CAGTGACTAATTGGGTTATA+TGG | + | chr4.4:38585616-38585635 | MS.gene45732:intron | 35.0% | |
| CCCGTCAATTTCATATACTT+AGG | - | chr4.4:38582643-38582662 | None:intergenic | 35.0% | |
| CCTGTTATCAGTGACTAATT+GGG | + | chr4.4:38585608-38585627 | MS.gene45732:intron | 35.0% | |
| CTAAATTGAAGTGAGAGTGA+TGG | + | chr4.4:38582696-38582715 | MS.gene45732:intron | 35.0% | |
| CTGAACTCAATGATTATAGC+TGG | + | chr4.4:38584957-38584976 | MS.gene45732:CDS | 35.0% | |
| CTGGCAAGTTTAGATCAAAA+AGG | - | chr4.4:38586248-38586267 | None:intergenic | 35.0% | |
| GAAGTTACAACCACTAACAT+AGG | - | chr4.4:38582792-38582811 | None:intergenic | 35.0% | |
| GAGCAATAAAGCTGACAATA+CGG | + | chr4.4:38585469-38585488 | MS.gene45732:CDS | 35.0% | |
| GGTACATGCATTATCATAAC+CGG | + | chr4.4:38584831-38584850 | MS.gene45732:CDS | 35.0% | |
| TAACGCTTGAAAACCTTGAT+TGG | - | chr4.4:38583848-38583867 | None:intergenic | 35.0% | |
| TACGGGTAAATGTCTATTGT+TGG | + | chr4.4:38585487-38585506 | MS.gene45732:intron | 35.0% | |
| TACTTGACCAAGTATGATCA+CGG | - | chr4.4:38584739-38584758 | None:intergenic | 35.0% | |
| TAGTGATGAAGCAACAAGAA+TGG | + | chr4.4:38583496-38583515 | MS.gene45732:CDS | 35.0% | |
| TATGGTGATCCAACATCTAA+TGG | + | chr4.4:38583021-38583040 | MS.gene45732:intron | 35.0% | |
| TATTTATCATCGTTGGGATG+TGG | + | chr4.4:38583334-38583353 | MS.gene45732:CDS | 35.0% | |
| TGAGAGTGATGGTTTATTCT+TGG | + | chr4.4:38582707-38582726 | MS.gene45732:intron | 35.0% | |
| TGTAGATGATCTCACTTAGT+GGG | + | chr4.4:38582870-38582889 | MS.gene45732:intron | 35.0% | |
| TGTGTCCAACCTGTAAAAAT+AGG | - | chr4.4:38583981-38584000 | None:intergenic | 35.0% | |
| TTCTTTGTCAAGGTAAACGA+GGG | + | chr4.4:38584005-38584024 | MS.gene45732:CDS | 35.0% | |
| TTGAGAATCTCCTATGTTAG+TGG | + | chr4.4:38582779-38582798 | MS.gene45732:intron | 35.0% | |
| TTTCTTTGTCAAGGTAAACG+AGG | + | chr4.4:38584004-38584023 | MS.gene45732:CDS | 35.0% | |
| ! | ATTCTTGTTGCTTCATCACT+AGG | - | chr4.4:38583497-38583516 | None:intergenic | 35.0% |
| ! | CATGGAAAAGTATAATGACC+GGG | - | chr4.4:38584521-38584540 | None:intergenic | 35.0% |
| ! | GCGTTTGCGTTTTATATGTT+TGG | + | chr4.4:38585037-38585056 | MS.gene45732:CDS | 35.0% |
| ! | GTATTGATAATCTTCATCGG+TGG | - | chr4.4:38582187-38582206 | None:intergenic | 35.0% |
| ! | GTGCATCGACAATGATTTAT+TGG | + | chr4.4:38585361-38585380 | MS.gene45732:CDS | 35.0% |
| ! | TAAGTGTTGTGCTTTAGATG+AGG | + | chr4.4:38585274-38585293 | MS.gene45732:intron | 35.0% |
| ! | TGATGAAAAGTTTGGAGCTT+TGG | + | chr4.4:38582502-38582521 | MS.gene45732:intron | 35.0% |
| !! | AAGAGGGTTGATGAAAAGTT+TGG | + | chr4.4:38582494-38582513 | MS.gene45732:intron | 35.0% |
| !! | GCATATTTAAAGGTGTCGAA+AGG | - | chr4.4:38585184-38585203 | None:intergenic | 35.0% |
| !! | TTGGAGCTTTGGAATTGATT+TGG | + | chr4.4:38582513-38582532 | MS.gene45732:intron | 35.0% |
| AAGTAAACGCATCAGATGCA+TGG | + | chr4.4:38584031-38584050 | MS.gene45732:CDS | 40.0% | |
| AATGGACCGCACATAAATAG+TGG | + | chr4.4:38583741-38583760 | MS.gene45732:intron | 40.0% | |
| AGAAGCAACGGAATAATACG+AGG | - | chr4.4:38585546-38585565 | None:intergenic | 40.0% | |
| ATCAAGAGAAATCAGCTGAG+CGG | + | chr4.4:38584789-38584808 | MS.gene45732:CDS | 40.0% | |
| ATGGCGTATTGTCATGTTAG+TGG | + | chr4.4:38583647-38583666 | MS.gene45732:intron | 40.0% | |
| CAACAACAACCAAGCCTTTA+CGG | - | chr4.4:38584611-38584630 | None:intergenic | 40.0% | |
| CAGCATAAAGAGAGAAGCAA+CGG | - | chr4.4:38585558-38585577 | None:intergenic | 40.0% | |
| CATACTTCTCTGCCATATCA+GGG | - | chr4.4:38584118-38584137 | None:intergenic | 40.0% | |
| CATACTTGGTCAAGTATAGC+TGG | + | chr4.4:38584743-38584762 | MS.gene45732:CDS | 40.0% | |
| CCCAATTAGTCACTGATAAC+AGG | - | chr4.4:38585611-38585630 | None:intergenic | 40.0% | |
| CTTAATCAGTCAGAAGAGAG+TGG | + | chr4.4:38586186-38586205 | MS.gene45732:CDS | 40.0% | |
| GAAGCAACGGAATAATACGA+GGG | - | chr4.4:38585545-38585564 | None:intergenic | 40.0% | |
| GACACAGCATTTCTTTGTCA+AGG | + | chr4.4:38583995-38584014 | MS.gene45732:CDS | 40.0% | |
| GATCATAGTTGTATGGGGAT+CGG | + | chr4.4:38585797-38585816 | MS.gene45732:intron | 40.0% | |
| GCTGTCGTAAGAACTTTACT+TGG | + | chr4.4:38584083-38584102 | MS.gene45732:CDS | 40.0% | |
| GGAATACTCACCAAAATGCT+TGG | - | chr4.4:38584466-38584485 | None:intergenic | 40.0% | |
| GTCCAACCTGTAAAAATAGG+CGG | - | chr4.4:38583978-38583997 | None:intergenic | 40.0% | |
| GTCTCAACATGTACACTTTG+TGG | + | chr4.4:38585672-38585691 | MS.gene45732:intron | 40.0% | |
| GTGCATTCATATACAGAAGG+AGG | + | chr4.4:38583253-38583272 | MS.gene45732:intron | 40.0% | |
| GTGGATGAATATCATGACTC+TGG | + | chr4.4:38583422-38583441 | MS.gene45732:CDS | 40.0% | |
| GTGGGAGATCATAGTTGTAT+GGG | + | chr4.4:38585791-38585810 | MS.gene45732:intron | 40.0% | |
| TATAATGACCGGGAACAAGT+TGG | - | chr4.4:38584511-38584530 | None:intergenic | 40.0% | |
| TCATACTTCTCTGCCATATC+AGG | - | chr4.4:38584119-38584138 | None:intergenic | 40.0% | |
| TGATCTCACTTAGTGGGATA+AGG | + | chr4.4:38582876-38582895 | MS.gene45732:intron | 40.0% | |
| TGGCGTATTGTCATGTTAGT+GGG | + | chr4.4:38583648-38583667 | MS.gene45732:intron | 40.0% | |
| TGGGAGATCATAGTTGTATG+GGG | + | chr4.4:38585792-38585811 | MS.gene45732:intron | 40.0% | |
| TGTACACTTTGTGGTCATGT+TGG | + | chr4.4:38585681-38585700 | MS.gene45732:intron | 40.0% | |
| TGTGAGGTAGAATGTTCATG+TGG | + | chr4.4:38584245-38584264 | MS.gene45732:CDS | 40.0% | |
| TGTGGGAGATCATAGTTGTA+TGG | + | chr4.4:38585790-38585809 | MS.gene45732:intron | 40.0% | |
| TTCTTCTTCGACGTCTTGAT+CGG | - | chr4.4:38582211-38582230 | None:intergenic | 40.0% | |
| TTTACACCCTCATGAAAGAC+TGG | + | chr4.4:38583932-38583951 | MS.gene45732:intron | 40.0% | |
| TTTCTGTACAGTTGGTTGTG+TGG | + | chr4.4:38584701-38584720 | MS.gene45732:intron | 40.0% | |
| TTTCTGTCTACAACTTCAGC+TGG | - | chr4.4:38586267-38586286 | None:intergenic | 40.0% | |
| TTTGATCCATGTTGCCGTAA+AGG | + | chr4.4:38584594-38584613 | MS.gene45732:intron | 40.0% | |
| ! | AGTCTGTGTGAGCTTTATAC+CGG | - | chr4.4:38584853-38584872 | None:intergenic | 40.0% |
| ! | ATTCTCATCCAACTTGTTCC+CGG | + | chr4.4:38584500-38584519 | MS.gene45732:intron | 40.0% |
| ! | GCTTTATTGCTCCAACAAAC+TGG | - | chr4.4:38585461-38585480 | None:intergenic | 40.0% |
| ! | GTTTTCGTAGAATTCACCGA+CGG | - | chr4.4:38582238-38582257 | None:intergenic | 40.0% |
| ! | TTGCCCATTTTCTGTACAGT+TGG | + | chr4.4:38584693-38584712 | MS.gene45732:intron | 40.0% |
| !! | GAAGGCATTTATGTTTGCTC+AGG | + | chr4.4:38583388-38583407 | MS.gene45732:CDS | 40.0% |
| !!! | TGAACTGTTTTGACACTTGC+AGG | + | chr4.4:38583119-38583138 | MS.gene45732:intron | 40.0% |
| AAAAAGGCCACCTTCTTCTC+TGG | - | chr4.4:38586232-38586251 | None:intergenic | 45.0% | |
| AAACCGGTGGAGAAAAATGG+TGG | + | chr4.4:38584413-38584432 | MS.gene45732:CDS | 45.0% | |
| ACACTTGCAGGTGATTACGA+AGG | + | chr4.4:38583131-38583150 | MS.gene45732:intron | 45.0% | |
| CACAAACCGGTGGAGAAAAA+TGG | + | chr4.4:38584410-38584429 | MS.gene45732:CDS | 45.0% | |
| CGAATTGCATTCCCACAATG+TGG | - | chr4.4:38584203-38584222 | None:intergenic | 45.0% | |
| CTTCAGAGCTTCCAGTTTGT+TGG | + | chr4.4:38585447-38585466 | MS.gene45732:CDS | 45.0% | |
| GACCCACCACTATTTATGTG+CGG | - | chr4.4:38583750-38583769 | None:intergenic | 45.0% | |
| GACCGCACATAAATAGTGGT+GGG | + | chr4.4:38583745-38583764 | MS.gene45732:intron | 45.0% | |
| GCATTTATGTTTGCTCAGGC+TGG | + | chr4.4:38583392-38583411 | MS.gene45732:CDS | 45.0% | |
| GGAATAATACGAGGGAGTTG+CGG | - | chr4.4:38585537-38585556 | None:intergenic | 45.0% | |
| GGAATCACTGATAGTTGCAC+AGG | + | chr4.4:38583152-38583171 | MS.gene45732:CDS | 45.0% | |
| GTCGAAGAAGAAGATTCCGT+CGG | + | chr4.4:38582219-38582238 | MS.gene45732:CDS | 45.0% | |
| GTGCGTGTCCACAAAATCAA+TGG | + | chr4.4:38583723-38583742 | MS.gene45732:intron | 45.0% | |
| GTGGGAATGCAATTCGTGTT+GGG | + | chr4.4:38584207-38584226 | MS.gene45732:CDS | 45.0% | |
| TCAAGAGAAATCAGCTGAGC+GGG | + | chr4.4:38584790-38584809 | MS.gene45732:CDS | 45.0% | |
| TCACTTAGTGGGATAAGGCT+TGG | + | chr4.4:38582881-38582900 | MS.gene45732:intron | 45.0% | |
| TCCCACATCAAACACGAACA+GGG | - | chr4.4:38584311-38584330 | None:intergenic | 45.0% | |
| TGGGAATGCAATTCGTGTTG+GGG | + | chr4.4:38584208-38584227 | MS.gene45732:CDS | 45.0% | |
| TGTGGGAATGCAATTCGTGT+TGG | + | chr4.4:38584206-38584225 | MS.gene45732:CDS | 45.0% | |
| ! | GTATTTGCGGCCAAGCATTT+TGG | + | chr4.4:38584453-38584472 | MS.gene45732:CDS | 45.0% |
| !! | CAACCACCATTTTTCTCCAC+CGG | - | chr4.4:38584419-38584438 | None:intergenic | 45.0% |
| !! | CAAGGTTTTCAAGCGTTAGC+CGG | + | chr4.4:38583850-38583869 | MS.gene45732:intron | 45.0% |
| !! | GAAGCAACAAGAATGGACTG+TGG | + | chr4.4:38583503-38583522 | MS.gene45732:CDS | 45.0% |
| !! | TGGTAGAAAGCACCCTGATA+TGG | + | chr4.4:38584103-38584122 | MS.gene45732:CDS | 45.0% |
| !!! | CATTTTTCTCCACCGGTTTG+TGG | - | chr4.4:38584412-38584431 | None:intergenic | 45.0% |
| !!! | CTTTGGCCGCCTATTTTTAC+AGG | + | chr4.4:38583969-38583988 | MS.gene45732:intron | 45.0% |
| !!! | GTATGGGGATCGGTTAGTTT+TGG | + | chr4.4:38585807-38585826 | MS.gene45732:intron | 45.0% |
| !!! | TGTGCGGTCCATTGATTTTG+TGG | - | chr4.4:38583734-38583753 | None:intergenic | 45.0% |
| !!! | TATAGATTAATTTAATTTTA+TGG | + | chr4.4:38584566-38584585 | MS.gene45732:intron | 5.0% |
| !!! | TATTTATTTATTTTTTTGAT+CGG | + | chr4.4:38583892-38583911 | MS.gene45732:intron | 5.0% |
| ACCAAGCCTTTACGGCAACA+TGG | - | chr4.4:38584603-38584622 | None:intergenic | 50.0% | |
| AGCAGCGGGAGAAATAGAAG+AGG | - | chr4.4:38582283-38582302 | None:intergenic | 50.0% | |
| AGTATAGCTGGTCACAGCTG+TGG | + | chr4.4:38584755-38584774 | MS.gene45732:CDS | 50.0% | |
| CCACATCAAACACGAACAGG+GGG | - | chr4.4:38584309-38584328 | None:intergenic | 50.0% | |
| CCCACATCAAACACGAACAG+GGG | - | chr4.4:38584310-38584329 | None:intergenic | 50.0% | |
| CCCCTGTTCGTGTTTGATGT+GGG | + | chr4.4:38584307-38584326 | MS.gene45732:CDS | 50.0% | |
| CTACTGGCCGTGATCATACT+TGG | + | chr4.4:38584729-38584748 | MS.gene45732:CDS | 50.0% | |
| CTCCCACATCAAACACGAAC+AGG | - | chr4.4:38584312-38584331 | None:intergenic | 50.0% | |
| CTGTACAGTTGGTTGTGTGG+TGG | + | chr4.4:38584704-38584723 | MS.gene45732:intron | 50.0% | |
| GCAGCGGGAGAAATAGAAGA+GGG | - | chr4.4:38582282-38582301 | None:intergenic | 50.0% | |
| GGACCGCACATAAATAGTGG+TGG | + | chr4.4:38583744-38583763 | MS.gene45732:intron | 50.0% | |
| GGATCAACAGCAGCAGTTAG+AGG | + | chr4.4:38585123-38585142 | MS.gene45732:CDS | 50.0% | |
| GGGAATGCAATTCGTGTTGG+GGG | + | chr4.4:38584209-38584228 | MS.gene45732:CDS | 50.0% | |
| GGGCAAAGAGGGATCTCTAT+AGG | + | chr4.4:38584810-38584829 | MS.gene45732:CDS | 50.0% | |
| GTGTTTGATGTGGGAGCTCT+GGG | + | chr4.4:38584316-38584335 | MS.gene45732:CDS | 50.0% | |
| TCCATGTTGCCGTAAAGGCT+TGG | + | chr4.4:38584599-38584618 | MS.gene45732:intron | 50.0% | |
| ! | ATATCATGACTCTGGCTCGC+TGG | + | chr4.4:38583430-38583449 | MS.gene45732:CDS | 50.0% |
| ! | CTGTCCAAAGTGCCACAAAC+CGG | + | chr4.4:38584397-38584416 | MS.gene45732:CDS | 50.0% |
| ! | GGGTGATGATGACTTGTGTG+AGG | + | chr4.4:38584229-38584248 | MS.gene45732:CDS | 50.0% |
| ! | TTCTATTTCTCCCGCTGCTC+AGG | + | chr4.4:38582284-38582303 | MS.gene45732:CDS | 50.0% |
| !!! | GGCCGCCTATTTTTACAGGT+TGG | + | chr4.4:38583973-38583992 | MS.gene45732:intron | 50.0% |
| AAGCGTGCCAGAGAAGAAGG+TGG | + | chr4.4:38586222-38586241 | MS.gene45732:CDS | 55.0% | |
| AAGGAACGAACCTGAGCAGC+GGG | - | chr4.4:38582297-38582316 | None:intergenic | 55.0% | |
| AATCAGCTGAGCGGGCAAAG+AGG | + | chr4.4:38584798-38584817 | MS.gene45732:CDS | 55.0% | |
| ATCAGCTGAGCGGGCAAAGA+GGG | + | chr4.4:38584799-38584818 | MS.gene45732:CDS | 55.0% | |
| CAAGCGTTAGCCGGATGACA+TGG | + | chr4.4:38583859-38583878 | MS.gene45732:intron | 55.0% | |
| CCCCCTGTTCGTGTTTGATG+TGG | + | chr4.4:38584306-38584325 | MS.gene45732:CDS | 55.0% | |
| CGGTTTGTGGCACTTTGGAC+AGG | - | chr4.4:38584399-38584418 | None:intergenic | 55.0% | |
| CGTAAGCGTGCCAGAGAAGA+AGG | + | chr4.4:38586219-38586238 | MS.gene45732:CDS | 55.0% | |
| CGTGTTTGATGTGGGAGCTC+TGG | + | chr4.4:38584315-38584334 | MS.gene45732:CDS | 55.0% | |
| GAAGGAACGAACCTGAGCAG+CGG | - | chr4.4:38582298-38582317 | None:intergenic | 55.0% | |
| TTCCCACAATGTGGCGTGCT+CGG | - | chr4.4:38584194-38584213 | None:intergenic | 55.0% | |
| ! | TCCAAAGTGCCACAAACCGG+TGG | + | chr4.4:38584400-38584419 | MS.gene45732:CDS | 55.0% |
| ! | TGCTCAGGCTGGTGTTAGTG+TGG | + | chr4.4:38583403-38583422 | MS.gene45732:CDS | 55.0% |
| ! | TGGTTGTGTGGTGGAGCTAC+TGG | + | chr4.4:38584713-38584732 | MS.gene45732:CDS | 55.0% |
| !! | TCCACCGGTTTGTGGCACTT+TGG | - | chr4.4:38584404-38584423 | None:intergenic | 55.0% |
| GGAGGACTTGCGCAGAGTGA+TGG | + | chr4.4:38583271-38583290 | MS.gene45732:CDS | 60.0% | |
| GTCCGAGCACGCCACATTGT+GGG | + | chr4.4:38584189-38584208 | MS.gene45732:CDS | 60.0% | |
| TGTCCGAGCACGCCACATTG+TGG | + | chr4.4:38584188-38584207 | MS.gene45732:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 38582165 | 38586290 | 38582165 | ID=MS.gene45732 |
| chr4.4 | mRNA | 38582165 | 38586290 | 38582165 | ID=MS.gene45732.t1;Parent=MS.gene45732 |
| chr4.4 | exon | 38582165 | 38582305 | 38582165 | ID=MS.gene45732.t1.exon1;Parent=MS.gene45732.t1 |
| chr4.4 | CDS | 38582165 | 38582305 | 38582165 | ID=cds.MS.gene45732.t1;Parent=MS.gene45732.t1 |
| chr4.4 | exon | 38583141 | 38583173 | 38583141 | ID=MS.gene45732.t1.exon2;Parent=MS.gene45732.t1 |
| chr4.4 | CDS | 38583141 | 38583173 | 38583141 | ID=cds.MS.gene45732.t1;Parent=MS.gene45732.t1 |
| chr4.4 | exon | 38583269 | 38583545 | 38583269 | ID=MS.gene45732.t1.exon3;Parent=MS.gene45732.t1 |
| chr4.4 | CDS | 38583269 | 38583545 | 38583269 | ID=cds.MS.gene45732.t1;Parent=MS.gene45732.t1 |
| chr4.4 | exon | 38583991 | 38584474 | 38583991 | ID=MS.gene45732.t1.exon4;Parent=MS.gene45732.t1 |
| chr4.4 | CDS | 38583991 | 38584474 | 38583991 | ID=cds.MS.gene45732.t1;Parent=MS.gene45732.t1 |
| chr4.4 | exon | 38584712 | 38585272 | 38584712 | ID=MS.gene45732.t1.exon5;Parent=MS.gene45732.t1 |
| chr4.4 | CDS | 38584712 | 38585272 | 38584712 | ID=cds.MS.gene45732.t1;Parent=MS.gene45732.t1 |
| chr4.4 | exon | 38585355 | 38585491 | 38585355 | ID=MS.gene45732.t1.exon6;Parent=MS.gene45732.t1 |
| chr4.4 | CDS | 38585355 | 38585491 | 38585355 | ID=cds.MS.gene45732.t1;Parent=MS.gene45732.t1 |
| chr4.4 | exon | 38586124 | 38586290 | 38586124 | ID=MS.gene45732.t1.exon7;Parent=MS.gene45732.t1 |
| chr4.4 | CDS | 38586124 | 38586290 | 38586124 | ID=cds.MS.gene45732.t1;Parent=MS.gene45732.t1 |
| Gene Sequence |
| Protein sequence |
