Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47878.t1 | XP_003629943.2 | 99.3 | 724 | 5 | 0 | 1 | 724 | 1 | 724 | 0.00E+00 | 1177.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47878.t1 | Q5XIN6 | 46.9 | 322 | 165 | 3 | 178 | 497 | 155 | 472 | 1.8e-72 | 275.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47878.t1 | G7L8S9 | 99.3 | 724 | 5 | 0 | 1 | 724 | 1 | 724 | 0.0e+00 | 1177.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene47878 | 0.870425 | 1.47E-66 | -1.69E-46 |
| MS.gene049283 | MS.gene47878 | 0.829612 | 4.67E-55 | -1.69E-46 |
| MS.gene049824 | MS.gene47878 | 0.846791 | 1.74E-59 | -1.69E-46 |
| MS.gene049825 | MS.gene47878 | 0.829413 | 5.22E-55 | -1.69E-46 |
| MS.gene049873 | MS.gene47878 | 0.820538 | 6.51E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene47878 | 0.829991 | 3.78E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene47878 | 0.817136 | 3.86E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene47878 | 0.816626 | 5.02E-52 | -1.69E-46 |
| MS.gene050885 | MS.gene47878 | 0.815893 | 7.32E-52 | -1.69E-46 |
| MS.gene051574 | MS.gene47878 | 0.803379 | 3.59E-49 | -1.69E-46 |
| MS.gene051597 | MS.gene47878 | 0.83798 | 3.77E-57 | -1.69E-46 |
| MS.gene052500 | MS.gene47878 | 0.817923 | 2.56E-52 | -1.69E-46 |
| MS.gene052502 | MS.gene47878 | 0.816192 | 6.28E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene47878 | 0.800861 | 1.18E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene47878 | 0.817107 | 3.91E-52 | -1.69E-46 |
| MS.gene052717 | MS.gene47878 | 0.812732 | 3.66E-51 | -1.69E-46 |
| MS.gene052826 | MS.gene47878 | 0.820086 | 8.26E-53 | -1.69E-46 |
| MS.gene052954 | MS.gene47878 | 0.82161 | 3.68E-53 | -1.69E-46 |
| MS.gene053080 | MS.gene47878 | 0.829528 | 4.89E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene47878 | 0.822912 | 1.84E-53 | -1.69E-46 |
| MS.gene053294 | MS.gene47878 | 0.816345 | 5.80E-52 | -1.69E-46 |
| MS.gene053931 | MS.gene47878 | 0.819341 | 1.22E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene47878 | 0.844374 | 7.87E-59 | -1.69E-46 |
| MS.gene053995 | MS.gene47878 | 0.832498 | 9.13E-56 | -1.69E-46 |
| MS.gene054328 | MS.gene47878 | 0.805268 | 1.45E-49 | -1.69E-46 |
| MS.gene054957 | MS.gene47878 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene055166 | MS.gene47878 | 0.81536 | 9.62E-52 | -1.69E-46 |
| MS.gene055222 | MS.gene47878 | 0.809632 | 1.72E-50 | -1.69E-46 |
| MS.gene05548 | MS.gene47878 | 0.806649 | 7.42E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene47878 | 0.862646 | 4.37E-64 | -1.69E-46 |
| MS.gene055841 | MS.gene47878 | 0.80366 | 3.14E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene47878 | 0.847797 | 9.21E-60 | -1.69E-46 |
| MS.gene056403 | MS.gene47878 | 0.866518 | 2.69E-65 | -1.69E-46 |
| MS.gene056506 | MS.gene47878 | 0.818503 | 1.89E-52 | -1.69E-46 |
| MS.gene05659 | MS.gene47878 | 0.822756 | 2.00E-53 | -1.69E-46 |
| MS.gene056605 | MS.gene47878 | 0.869401 | 3.18E-66 | -1.69E-46 |
| MS.gene05689 | MS.gene47878 | 0.852652 | 4.01E-61 | -1.69E-46 |
| MS.gene057079 | MS.gene47878 | 0.809429 | 1.90E-50 | -1.69E-46 |
| MS.gene057555 | MS.gene47878 | 0.816754 | 4.70E-52 | -1.69E-46 |
| MS.gene059317 | MS.gene47878 | 0.811411 | 7.09E-51 | -1.69E-46 |
| MS.gene05953 | MS.gene47878 | 0.836064 | 1.16E-56 | -1.69E-46 |
| MS.gene05954 | MS.gene47878 | 0.838878 | 2.21E-57 | -1.69E-46 |
| MS.gene059830 | MS.gene47878 | 0.818378 | 2.02E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene47878 | -0.802763 | 4.81E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene47878 | 0.860709 | 1.71E-63 | -1.69E-46 |
| MS.gene060365 | MS.gene47878 | 0.801482 | 8.82E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene47878 | 0.800866 | 1.18E-48 | -1.69E-46 |
| MS.gene060830 | MS.gene47878 | 0.84333 | 1.50E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47878.t1 | MTR_8g088580 | 99.171 | 724 | 6 | 0 | 1 | 724 | 1 | 724 | 0.0 | 1460 |
| MS.gene47878.t1 | MTR_8g088580 | 99.002 | 501 | 5 | 0 | 1 | 501 | 1 | 501 | 0.0 | 1017 |
| MS.gene47878.t1 | MTR_7g080610 | 74.590 | 610 | 148 | 4 | 102 | 710 | 148 | 751 | 0.0 | 890 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47878.t1 | AT3G59820 | 65.952 | 746 | 211 | 8 | 1 | 710 | 1 | 739 | 0.0 | 916 |
| MS.gene47878.t1 | AT3G59820 | 65.952 | 746 | 211 | 8 | 1 | 710 | 1 | 739 | 0.0 | 916 |
| MS.gene47878.t1 | AT3G59820 | 65.952 | 746 | 211 | 8 | 1 | 710 | 1 | 739 | 0.0 | 916 |
| MS.gene47878.t1 | AT1G65540 | 68.370 | 724 | 209 | 9 | 1 | 710 | 1 | 718 | 0.0 | 911 |
| MS.gene47878.t1 | AT1G65540 | 68.370 | 724 | 209 | 9 | 1 | 710 | 1 | 718 | 0.0 | 911 |
| MS.gene47878.t1 | AT1G65540 | 68.370 | 724 | 209 | 9 | 1 | 710 | 1 | 718 | 0.0 | 911 |
| MS.gene47878.t1 | AT3G59820 | 65.894 | 733 | 207 | 8 | 1 | 697 | 1 | 726 | 0.0 | 894 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATTATTGTCCCCTTTA+TGG | 0.071436 | 4.4:+12514636 | MS.gene47878:CDS |
| TATCTCTAATGAGGAAATTT+TGG | 0.085322 | 4.4:+12515526 | MS.gene47878:CDS |
| CCTCCATCGGTCACCAATTT+TGG | 0.113720 | 4.4:-12520287 | None:intergenic |
| CTATTTCCTTCTCAAGATTT+TGG | 0.142617 | 4.4:-12520252 | None:intergenic |
| AGTGGAGGACATTGTTAAAT+TGG | 0.214201 | 4.4:+12522361 | MS.gene47878:CDS |
| TACAGGGCATTTATTGTGTC+TGG | 0.236234 | 4.4:+12516618 | MS.gene47878:intron |
| AAGATACATACCTTTATCTT+TGG | 0.242474 | 4.4:-12521900 | None:intergenic |
| GGCAGCTTTATATGCCTTAA+AGG | 0.246869 | 4.4:-12520054 | None:intergenic |
| GTATTCTGTAGTATTTCTTC+TGG | 0.263219 | 4.4:-12516651 | None:intergenic |
| CCATTTCTTTGACTGTATCT+TGG | 0.269248 | 4.4:-12515316 | None:intergenic |
| CATGTTGCCATCAACATTTC+AGG | 0.280059 | 4.4:+12514696 | MS.gene47878:CDS |
| CCTCTTGCCTGTGTTTCTTA+AGG | 0.280528 | 4.4:+12514663 | MS.gene47878:CDS |
| TTTACAAACGCGAGTAGTTC+CGG | 0.285868 | 4.4:+12513609 | MS.gene47878:CDS |
| TATCGACATTGAAGCATTAC+TGG | 0.288373 | 4.4:+12514467 | MS.gene47878:CDS |
| AAAGATTGCTGACGAGTTCT+TGG | 0.298022 | 4.4:-12521877 | None:intergenic |
| ACTTGCACATATTTACTAAT+CGG | 0.325175 | 4.4:-12515710 | None:intergenic |
| TGGTGACCGATGGAGGCTTC+TGG | 0.338350 | 4.4:+12520294 | MS.gene47878:CDS |
| CTCAGAAAGGAAGAGGAAAC+TGG | 0.351573 | 4.4:+12516743 | MS.gene47878:CDS |
| AGAGTGTTGTGCAAAGAGTT+AGG | 0.352785 | 4.4:+12513862 | MS.gene47878:CDS |
| TACATGGGTATCAATCCTTT+TGG | 0.356123 | 4.4:+12515732 | MS.gene47878:CDS |
| CTCGCTCTCTACAATCTTCC+CGG | 0.374609 | 4.4:-12516237 | None:intergenic |
| AATGCAGGAAGAACGTATTA+AGG | 0.374831 | 4.4:+12516776 | MS.gene47878:CDS |
| TGGTTTGCTGCAGAGCGGAC+TGG | 0.380888 | 4.4:+12514410 | MS.gene47878:intron |
| AGCAATCTTTCCAAAGATAA+AGG | 0.386791 | 4.4:+12521890 | MS.gene47878:CDS |
| ATAGTATCTACAAGCTCATC+AGG | 0.386914 | 4.4:-12516687 | None:intergenic |
| AACTACTCGCGTTTGTAAAT+CGG | 0.392469 | 4.4:-12513605 | None:intergenic |
| AGGCAAGAGGAATTCCATAA+AGG | 0.395244 | 4.4:-12514650 | None:intergenic |
| CTTGCACATATTTACTAATC+GGG | 0.395435 | 4.4:-12515709 | None:intergenic |
| ATCTTGTCCTGAAATGTTGA+TGG | 0.401604 | 4.4:-12514703 | None:intergenic |
| GAACTACTGCCGATATCTTT+AGG | 0.402854 | 4.4:+12514596 | MS.gene47878:CDS |
| GGCAAGAGGAATTCCATAAA+GGG | 0.403453 | 4.4:-12514649 | None:intergenic |
| GGTTTGCTGCAGAGCGGACT+GGG | 0.403638 | 4.4:+12514411 | MS.gene47878:intron |
| GATGACGTGGATGCCAAAAT+TGG | 0.415174 | 4.4:+12520274 | MS.gene47878:CDS |
| ATGTACTTGAAGAATACATT+GGG | 0.417521 | 4.4:+12521842 | MS.gene47878:CDS |
| TTCTATCGCTTCTGCAAAAG+AGG | 0.422196 | 4.4:+12513542 | MS.gene47878:CDS |
| ATGGGAAGAGTCTCTCTAGA+AGG | 0.422826 | 4.4:+12514554 | MS.gene47878:CDS |
| TTACAAACGCGAGTAGTTCC+GGG | 0.423277 | 4.4:+12513610 | MS.gene47878:CDS |
| TACGTTCTTCCTGCATTTCG+AGG | 0.428362 | 4.4:-12516770 | None:intergenic |
| CAGCATGCTCATGTTCCTCT+CGG | 0.431895 | 4.4:-12520076 | None:intergenic |
| TTGTTGTTGAAGCTTGCTAA+TGG | 0.433183 | 4.4:+12514535 | MS.gene47878:CDS |
| CCAAGATACAGTCAAAGAAA+TGG | 0.437590 | 4.4:+12515316 | MS.gene47878:CDS |
| ACATTGAAGCATTACTGGTT+GGG | 0.437850 | 4.4:+12514472 | MS.gene47878:CDS |
| TGTAGAGAGCGAGGCATGCT+TGG | 0.437936 | 4.4:+12516247 | MS.gene47878:CDS |
| TCTAAGACTAGTTAATAAAG+AGG | 0.440677 | 4.4:+12517463 | MS.gene47878:CDS |
| CACTTGTACAGCTTCGTGAT+TGG | 0.445592 | 4.4:+12516445 | MS.gene47878:intron |
| ACCGCTTGATCGCATTCCTC+AGG | 0.449324 | 4.4:-12513771 | None:intergenic |
| TGTTGAAGAAATGCGCCAAC+AGG | 0.449470 | 4.4:+12516279 | MS.gene47878:CDS |
| AATGTTGATGGCAACATGTT+GGG | 0.449916 | 4.4:-12514691 | None:intergenic |
| CTGATGTGAGAATCAGTTCC+AGG | 0.451647 | 4.4:+12514512 | MS.gene47878:CDS |
| CTCTTTCAGAAGCTGAACTC+CGG | 0.452885 | 4.4:+12516218 | MS.gene47878:CDS |
| AGTAAATATGTGCAAGTACA+TGG | 0.453397 | 4.4:+12515716 | MS.gene47878:CDS |
| TTACTCTAGATAATATAAAC+AGG | 0.454450 | 4.4:+12515576 | MS.gene47878:CDS |
| TTTCCAGTGAACAAGTTTGT+TGG | 0.455951 | 4.4:-12514434 | None:intergenic |
| GTGGAGGACATTGTTAAATT+GGG | 0.457674 | 4.4:+12522362 | MS.gene47878:CDS |
| ACAATAATGAAAACTGCAAC+GGG | 0.458839 | 4.4:-12514625 | None:intergenic |
| GGGCCAACAAACTTGTTCAC+TGG | 0.460815 | 4.4:+12514431 | MS.gene47878:CDS |
| GCAGCCGATGCTACCTCCTC+AGG | 0.474217 | 4.4:-12521818 | None:intergenic |
| AATTGAGACGGATTCTAGTC+AGG | 0.474888 | 4.4:+12517194 | MS.gene47878:CDS |
| TTCACCACATCATCATTCTC+CGG | 0.478985 | 4.4:-12513729 | None:intergenic |
| GTAGAGAGCGAGGCATGCTT+GGG | 0.482495 | 4.4:+12516248 | MS.gene47878:CDS |
| GGGAACTAGCCTAAAGATAT+CGG | 0.484803 | 4.4:-12514605 | None:intergenic |
| ACATTGTTAAATTGGGTGGT+TGG | 0.486119 | 4.4:+12522369 | MS.gene47878:CDS |
| TTTCTTTGACTGTATCTTGG+AGG | 0.486610 | 4.4:-12515313 | None:intergenic |
| GAAAGTATCAAAAGAGATGA+TGG | 0.489393 | 4.4:-12516495 | None:intergenic |
| TGTACAGCTTCGTGATTGGT+TGG | 0.490639 | 4.4:+12516449 | MS.gene47878:intron |
| TGCTGAGTCGGATGATGATC+GGG | 0.493905 | 4.4:+12520097 | MS.gene47878:CDS |
| TTTGTCGCAGTCGTCGGAGG+CGG | 0.496384 | 4.4:+12513683 | MS.gene47878:CDS |
| CCAAAATTGGTGACCGATGG+AGG | 0.496986 | 4.4:+12520287 | MS.gene47878:CDS |
| GACATTGAAGCATTACTGGT+TGG | 0.497405 | 4.4:+12514471 | MS.gene47878:CDS |
| GTCGGATGATGATCGGGATA+AGG | 0.497907 | 4.4:+12520103 | MS.gene47878:CDS |
| GGAGGAAGAAAAGGAGGAAG+CGG | 0.499313 | 4.4:+12517161 | MS.gene47878:CDS |
| TTGGGTGGTTGGAGAGAAGA+TGG | 0.499968 | 4.4:+12522380 | MS.gene47878:CDS |
| ACTGGAGTTCCTCGAAATGC+AGG | 0.505908 | 4.4:+12516761 | MS.gene47878:CDS |
| AAGAGTAACTCACCTGCTCA+TGG | 0.506497 | 4.4:-12513928 | None:intergenic |
| AATGCAGGAGGAGGAAGAAA+AGG | 0.507733 | 4.4:+12517152 | MS.gene47878:intron |
| AAGGAAACTCAAGGCAAGAA+TGG | 0.508572 | 4.4:+12515277 | MS.gene47878:CDS |
| GAGTGTTGTGCAAAGAGTTA+GGG | 0.510806 | 4.4:+12513863 | MS.gene47878:CDS |
| TCTTTCAGAAGCTGAACTCC+GGG | 0.510937 | 4.4:+12516219 | MS.gene47878:CDS |
| GCAGGAGGAGGAAGAAAAGG+AGG | 0.511863 | 4.4:+12517155 | MS.gene47878:intron |
| ACAGGGCATTTATTGTGTCT+GGG | 0.513234 | 4.4:+12516619 | MS.gene47878:intron |
| GAGCTGTTGCTTCCATGAGC+AGG | 0.514094 | 4.4:+12513916 | MS.gene47878:CDS |
| TCAGGACAAGATGAAAGAAC+AGG | 0.515017 | 4.4:+12514714 | MS.gene47878:CDS |
| TAACAGCATGGTAGAGAAAG+AGG | 0.517382 | 4.4:+12520010 | MS.gene47878:CDS |
| TGTTGTTGAAGCTTGCTAAT+GGG | 0.517520 | 4.4:+12514536 | MS.gene47878:CDS |
| ATGTGTAGGAAGCATTGAAA+AGG | 0.519613 | 4.4:+12515258 | MS.gene47878:intron |
| GAATGCGATCAAGCGGTTGA+AGG | 0.520729 | 4.4:+12513777 | MS.gene47878:CDS |
| GTTGTTGAGATATTGTTGAA+TGG | 0.524782 | 4.4:-12513484 | None:intergenic |
| AAGAATACATTGGGGAAAGA+AGG | 0.525245 | 4.4:+12521851 | MS.gene47878:CDS |
| ATATGCTACGAAAACGTCTA+CGG | 0.526988 | 4.4:+12515775 | MS.gene47878:CDS |
| AACTCCTGAGGAGGTAGCAT+CGG | 0.528151 | 4.4:+12521814 | MS.gene47878:CDS |
| GGTTGGGTTGTAAACTGCTG+TGG | 0.531809 | 4.4:+12514488 | MS.gene47878:CDS |
| AGCATGCTCATGTTCCTCTC+GGG | 0.534922 | 4.4:-12520075 | None:intergenic |
| CTGCTGAGTCGGATGATGAT+CGG | 0.537481 | 4.4:+12520096 | MS.gene47878:CDS |
| GGATTCTAGTCAGGAAGATA+AGG | 0.537717 | 4.4:+12517203 | MS.gene47878:CDS |
| AATGTACTTGAAGAATACAT+TGG | 0.538204 | 4.4:+12521841 | MS.gene47878:CDS |
| ATTCTGTCTCAGAAAGGAAG+AGG | 0.541428 | 4.4:+12516736 | MS.gene47878:CDS |
| ACCGATGGAGGCTTCTGGAT+AGG | 0.542405 | 4.4:+12520299 | MS.gene47878:CDS |
| GATAAATTGATTCAAGAAGA+AGG | 0.544669 | 4.4:+12516187 | MS.gene47878:CDS |
| GAATGAGATGAATATTTCAA+CGG | 0.545285 | 4.4:+12517230 | MS.gene47878:CDS |
| GAAGCAACAGCTCTCAAAGC+AGG | 0.551861 | 4.4:-12513906 | None:intergenic |
| AGGTATGCATCAGTTCCAAA+AGG | 0.557131 | 4.4:-12515747 | None:intergenic |
| TCTTGATGACTTTATAAACA+TGG | 0.559563 | 4.4:+12515391 | MS.gene47878:CDS |
| GAAGTTCAAAACTCCGGTAG+CGG | 0.560038 | 4.4:+12515344 | MS.gene47878:CDS |
| TCTTACTCTTTCTATGAGTG+CGG | 0.561533 | 4.4:-12520132 | None:intergenic |
| GGAGGCGGCTGCGAGGAAGA+AGG | 0.563995 | 4.4:+12513698 | MS.gene47878:CDS |
| GACAATAATGAAAACTGCAA+CGG | 0.564641 | 4.4:-12514626 | None:intergenic |
| AGGTTCAAGTATCTCTAATG+AGG | 0.566590 | 4.4:+12515517 | MS.gene47878:CDS |
| CTGAGGATTCTGTCTCAGAA+AGG | 0.573406 | 4.4:+12516730 | MS.gene47878:CDS |
| TCCTGAGGAATGCGATCAAG+CGG | 0.584092 | 4.4:+12513770 | MS.gene47878:CDS |
| GCAAAAGAAGTTCAAAACTC+CGG | 0.587527 | 4.4:+12515338 | MS.gene47878:CDS |
| AAATGTTGATGGCAACATGT+TGG | 0.589158 | 4.4:-12514692 | None:intergenic |
| GAGGAAGAAGGAAGAACCGC+CGG | 0.589226 | 4.4:+12513710 | MS.gene47878:CDS |
| TGGGAAGAGTCTCTCTAGAA+GGG | 0.590300 | 4.4:+12514555 | MS.gene47878:CDS |
| AACGCGAGTAGTTCCGGGAA+CGG | 0.591126 | 4.4:+12513615 | MS.gene47878:CDS |
| GTTGGGTTGTAAACTGCTGT+GGG | 0.591262 | 4.4:+12514489 | MS.gene47878:CDS |
| AGCAAGCTTCAACAACAACC+TGG | 0.603381 | 4.4:-12514530 | None:intergenic |
| GTAGAGAAAGAGGGTTCAGA+TGG | 0.604109 | 4.4:+12520020 | MS.gene47878:CDS |
| ACCTATCCAGAAGCCTCCAT+CGG | 0.606529 | 4.4:-12520300 | None:intergenic |
| ACATGAGCATGCTGCTGAGT+CGG | 0.607403 | 4.4:+12520085 | MS.gene47878:CDS |
| AAGCTAAAACAGCTAATGCA+CGG | 0.611370 | 4.4:-12517320 | None:intergenic |
| ATGCCAAAATTGGTGACCGA+TGG | 0.612310 | 4.4:+12520284 | MS.gene47878:CDS |
| AGTTACATCTTTACCCTCTG+AGG | 0.616464 | 4.4:+12516713 | MS.gene47878:CDS |
| GTAAATATGTGCAAGTACAT+GGG | 0.619345 | 4.4:+12515717 | MS.gene47878:CDS |
| AGATGGGAAAATACTAGTGG+AGG | 0.621840 | 4.4:+12522346 | MS.gene47878:intron |
| AACAGCATGGTAGAGAAAGA+GGG | 0.622654 | 4.4:+12520011 | MS.gene47878:CDS |
| ATGTTGATGGCAACATGTTG+GGG | 0.623860 | 4.4:-12514690 | None:intergenic |
| GGCATATAAAGCTGCCCGAG+AGG | 0.626226 | 4.4:+12520061 | MS.gene47878:CDS |
| AGCATTGAAAAGGAAACTCA+AGG | 0.627803 | 4.4:+12515268 | MS.gene47878:CDS |
| CCTTAAGAAACACAGGCAAG+AGG | 0.630225 | 4.4:-12514663 | None:intergenic |
| ACCACATCATCATTCTCCGG+CGG | 0.632226 | 4.4:-12513726 | None:intergenic |
| AGTCGTCGGAGGCGGCTGCG+AGG | 0.634076 | 4.4:+12513691 | MS.gene47878:CDS |
| TTGCACATATTTACTAATCG+GGG | 0.634159 | 4.4:-12515708 | None:intergenic |
| CATGCTCCAAAATCTTGAGA+AGG | 0.635162 | 4.4:+12520246 | MS.gene47878:CDS |
| GGAGCAAGCAAGAATTGAGA+CGG | 0.635821 | 4.4:+12517182 | MS.gene47878:CDS |
| GGGAACACCTTAAGAAACAC+AGG | 0.638644 | 4.4:-12514670 | None:intergenic |
| CGGGAAGATTGTAGAGAGCG+AGG | 0.638771 | 4.4:+12516238 | MS.gene47878:CDS |
| ATGATGATGTGGTGAAGAAG+CGG | 0.642157 | 4.4:+12513736 | MS.gene47878:CDS |
| GAGGACATTGTTAAATTGGG+TGG | 0.644188 | 4.4:+12522365 | MS.gene47878:CDS |
| TCTGAGACAGAATCCTCAGA+GGG | 0.647021 | 4.4:-12516726 | None:intergenic |
| TGAGAAGGAAATAGATGACG+TGG | 0.654193 | 4.4:+12520261 | MS.gene47878:CDS |
| TATAGATGGGAAAATACTAG+TGG | 0.658958 | 4.4:+12522343 | MS.gene47878:intron |
| GCAAGAGGAATTCCATAAAG+GGG | 0.659870 | 4.4:-12514648 | None:intergenic |
| GATAGAACTCTATAACAGCA+TGG | 0.663535 | 4.4:+12519998 | MS.gene47878:intron |
| TGGGAAAGTAACTCCTGAGG+AGG | 0.664864 | 4.4:+12521805 | MS.gene47878:CDS |
| GCGGAAAGAAGCTTCTCCTG+AGG | 0.666939 | 4.4:+12513755 | MS.gene47878:CDS |
| TCAATGAGTCGATTGGTGTG+AGG | 0.669320 | 4.4:+12513658 | MS.gene47878:CDS |
| TAGTATCTACAAGCTCATCA+GGG | 0.670531 | 4.4:-12516686 | None:intergenic |
| ACTTGCTAGAAACAGAGCAG+TGG | 0.672691 | 4.4:+12517269 | MS.gene47878:CDS |
| CTGAAGATGAAAGACCATGA+GGG | 0.676229 | 4.4:+12522411 | MS.gene47878:CDS |
| TTCTGAGACAGAATCCTCAG+AGG | 0.690870 | 4.4:-12516727 | None:intergenic |
| TGATGGGAAAGTAACTCCTG+AGG | 0.693943 | 4.4:+12521802 | MS.gene47878:CDS |
| GCTGAAGATGAAAGACCATG+AGG | 0.710087 | 4.4:+12522410 | MS.gene47878:CDS |
| ACCGCCGGAGAATGATGATG+TGG | 0.711056 | 4.4:+12513725 | MS.gene47878:CDS |
| TGTACTTGAAGAATACATTG+GGG | 0.711529 | 4.4:+12521843 | MS.gene47878:CDS |
| AATGTGTTCAATGAGTCGAT+TGG | 0.723049 | 4.4:+12513651 | MS.gene47878:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 12513444 | 12522430 | 12513444 | ID=MS.gene47878 |
| chr4.4 | mRNA | 12513444 | 12522430 | 12513444 | ID=MS.gene47878.t1;Parent=MS.gene47878 |
| chr4.4 | exon | 12513444 | 12513937 | 12513444 | ID=MS.gene47878.t1.exon1;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12513444 | 12513937 | 12513444 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12514423 | 12514735 | 12514423 | ID=MS.gene47878.t1.exon2;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12514423 | 12514735 | 12514423 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12515266 | 12515412 | 12515266 | ID=MS.gene47878.t1.exon3;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12515266 | 12515412 | 12515266 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12515509 | 12515597 | 12515509 | ID=MS.gene47878.t1.exon4;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12515509 | 12515597 | 12515509 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12515707 | 12515799 | 12515707 | ID=MS.gene47878.t1.exon5;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12515707 | 12515799 | 12515707 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12516174 | 12516300 | 12516174 | ID=MS.gene47878.t1.exon6;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12516174 | 12516300 | 12516174 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12516456 | 12516520 | 12516456 | ID=MS.gene47878.t1.exon7;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12516456 | 12516520 | 12516456 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12516623 | 12516797 | 12516623 | ID=MS.gene47878.t1.exon8;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12516623 | 12516797 | 12516623 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12517159 | 12517350 | 12517159 | ID=MS.gene47878.t1.exon9;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12517159 | 12517350 | 12517159 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12517437 | 12517484 | 12517437 | ID=MS.gene47878.t1.exon10;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12517437 | 12517484 | 12517437 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12519999 | 12520148 | 12519999 | ID=MS.gene47878.t1.exon11;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12519999 | 12520148 | 12519999 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12520238 | 12520320 | 12520238 | ID=MS.gene47878.t1.exon12;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12520238 | 12520320 | 12520238 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12521796 | 12521911 | 12521796 | ID=MS.gene47878.t1.exon13;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12521796 | 12521911 | 12521796 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| chr4.4 | exon | 12522348 | 12522430 | 12522348 | ID=MS.gene47878.t1.exon14;Parent=MS.gene47878.t1 |
| chr4.4 | CDS | 12522348 | 12522430 | 12522348 | ID=cds.MS.gene47878.t1;Parent=MS.gene47878.t1 |
| Gene Sequence |
| Protein sequence |
