Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49310.t1 | XP_013468521.1 | 94.3 | 593 | 34 | 0 | 1 | 593 | 1 | 593 | 4.90E-283 | 983.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49310.t1 | Q9LII8 | 30.3 | 476 | 315 | 8 | 115 | 578 | 169 | 639 | 2.6e-46 | 188.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49310.t1 | A0A072VMA4 | 94.3 | 593 | 34 | 0 | 1 | 593 | 1 | 593 | 3.5e-283 | 983.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene49310 | 0.820273 | 7.49E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene49310 | 0.810655 | 1.03E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene49310 | 0.807168 | 5.77E-50 | -1.69E-46 |
| MS.gene049293 | MS.gene49310 | -0.809423 | 1.91E-50 | -1.69E-46 |
| MS.gene049473 | MS.gene49310 | 0.810766 | 9.79E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene49310 | 0.839729 | 1.33E-57 | -1.69E-46 |
| MS.gene049825 | MS.gene49310 | 0.851362 | 9.33E-61 | -1.69E-46 |
| MS.gene049863 | MS.gene49310 | 0.804064 | 2.58E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene49310 | 0.841486 | 4.62E-58 | -1.69E-46 |
| MS.gene050303 | MS.gene49310 | 0.816627 | 5.02E-52 | -1.69E-46 |
| MS.gene050885 | MS.gene49310 | 0.817792 | 2.74E-52 | -1.69E-46 |
| MS.gene051363 | MS.gene49310 | 0.809809 | 1.58E-50 | -1.69E-46 |
| MS.gene051597 | MS.gene49310 | 0.830062 | 3.63E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene49310 | 0.802368 | 5.80E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene49310 | 0.800337 | 1.51E-48 | -1.69E-46 |
| MS.gene052500 | MS.gene49310 | 0.808068 | 3.71E-50 | -1.69E-46 |
| MS.gene052502 | MS.gene49310 | 0.801549 | 8.55E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene49310 | 0.817097 | 3.94E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene49310 | 0.82842 | 9.08E-55 | -1.69E-46 |
| MS.gene052717 | MS.gene49310 | 0.805144 | 1.54E-49 | -1.69E-46 |
| MS.gene052826 | MS.gene49310 | 0.806386 | 8.44E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene49310 | 0.801936 | 7.12E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene49310 | 0.808214 | 3.46E-50 | -1.69E-46 |
| MS.gene053122 | MS.gene49310 | 0.80456 | 2.04E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene49310 | 0.844091 | 9.37E-59 | -1.69E-46 |
| MS.gene053294 | MS.gene49310 | 0.826391 | 2.78E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene49310 | 0.818887 | 1.55E-52 | -1.69E-46 |
| MS.gene053995 | MS.gene49310 | 0.825815 | 3.82E-54 | -1.69E-46 |
| MS.gene054657 | MS.gene49310 | 0.806253 | 9.00E-50 | -1.69E-46 |
| MS.gene055166 | MS.gene49310 | 0.811763 | 5.95E-51 | -1.69E-46 |
| MS.gene055222 | MS.gene49310 | 0.806521 | 7.90E-50 | -1.69E-46 |
| MS.gene05548 | MS.gene49310 | 0.805445 | 1.33E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene49310 | 0.811214 | 7.83E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene49310 | 0.802464 | 5.54E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene49310 | 0.858326 | 8.90E-63 | -1.69E-46 |
| MS.gene055841 | MS.gene49310 | 0.81774 | 2.82E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene49310 | 0.855533 | 5.92E-62 | -1.69E-46 |
| MS.gene056403 | MS.gene49310 | 0.867578 | 1.23E-65 | -1.69E-46 |
| MS.gene056605 | MS.gene49310 | 0.869668 | 2.61E-66 | -1.69E-46 |
| MS.gene056776 | MS.gene49310 | 0.806347 | 8.60E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene49310 | 0.847818 | 9.09E-60 | -1.69E-46 |
| MS.gene056986 | MS.gene49310 | 0.803843 | 2.87E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene49310 | 0.814546 | 1.46E-51 | -1.69E-46 |
| MS.gene057555 | MS.gene49310 | 0.809432 | 1.90E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene49310 | 0.808183 | 3.51E-50 | -1.69E-46 |
| MS.gene058126 | MS.gene49310 | 0.821887 | 3.18E-53 | -1.69E-46 |
| MS.gene05950 | MS.gene49310 | 0.810857 | 9.36E-51 | -1.69E-46 |
| MS.gene05953 | MS.gene49310 | 0.83712 | 6.27E-57 | -1.69E-46 |
| MS.gene05954 | MS.gene49310 | 0.846036 | 2.80E-59 | -1.69E-46 |
| MS.gene05985 | MS.gene49310 | -0.813035 | 3.14E-51 | -1.69E-46 |
| MS.gene059935 | MS.gene49310 | 0.886746 | 2.62E-72 | -1.69E-46 |
| MS.gene060365 | MS.gene49310 | 0.837578 | 4.78E-57 | -1.69E-46 |
| MS.gene060429 | MS.gene49310 | 0.802327 | 5.91E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene49310 | 0.809812 | 1.57E-50 | -1.69E-46 |
| MS.gene060830 | MS.gene49310 | 0.85241 | 4.70E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49310.t1 | MTR_1g070145 | 96.885 | 610 | 19 | 0 | 1 | 610 | 1 | 610 | 0.0 | 1213 |
| MS.gene49310.t1 | MTR_8g099745 | 28.715 | 498 | 330 | 6 | 91 | 574 | 65 | 551 | 3.53e-49 | 181 |
| MS.gene49310.t1 | MTR_8g027385 | 28.024 | 496 | 336 | 8 | 91 | 575 | 52 | 537 | 4.40e-44 | 166 |
| MS.gene49310.t1 | MTR_3g077950 | 26.844 | 488 | 341 | 6 | 104 | 582 | 266 | 746 | 1.51e-42 | 164 |
| MS.gene49310.t1 | MTR_3g077950 | 26.844 | 488 | 341 | 6 | 104 | 582 | 294 | 774 | 1.65e-42 | 164 |
| MS.gene49310.t1 | MTR_6g007110 | 27.879 | 495 | 324 | 7 | 98 | 574 | 190 | 669 | 5.91e-41 | 159 |
| MS.gene49310.t1 | MTR_4g106900 | 25.306 | 490 | 354 | 5 | 91 | 573 | 167 | 651 | 1.39e-40 | 157 |
| MS.gene49310.t1 | MTR_6g007110 | 27.974 | 454 | 294 | 7 | 98 | 533 | 190 | 628 | 1.89e-37 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49310.t1 | AT2G31240 | 67.935 | 552 | 171 | 4 | 42 | 590 | 63 | 611 | 0.0 | 773 |
| MS.gene49310.t1 | AT3G27960 | 29.868 | 529 | 351 | 10 | 87 | 603 | 141 | 661 | 5.64e-53 | 193 |
| MS.gene49310.t1 | AT3G27960 | 29.868 | 529 | 351 | 10 | 87 | 603 | 141 | 661 | 5.64e-53 | 193 |
| MS.gene49310.t1 | AT3G27960 | 29.694 | 458 | 306 | 7 | 87 | 533 | 141 | 593 | 1.95e-48 | 179 |
| MS.gene49310.t1 | AT4G10840 | 28.872 | 523 | 337 | 9 | 93 | 591 | 78 | 589 | 5.41e-48 | 178 |
| MS.gene49310.t1 | AT4G10840 | 28.879 | 464 | 296 | 8 | 93 | 533 | 78 | 530 | 4.49e-44 | 166 |
| MS.gene49310.t1 | AT1G27500 | 26.793 | 474 | 334 | 5 | 114 | 579 | 161 | 629 | 1.91e-41 | 160 |
| MS.gene49310.t1 | AT1G27500 | 26.653 | 484 | 322 | 7 | 114 | 579 | 172 | 640 | 2.68e-41 | 159 |
Find 156 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATGAGTTTGCAGTTAA+TGG | 0.164879 | 1.1:-52471502 | MS.gene49310:CDS |
| GAAGCAGGCTATTCCTTATT+TGG | 0.171283 | 1.1:-52470572 | MS.gene49310:CDS |
| TGGTTATATCTACAACAATT+TGG | 0.200770 | 1.1:-52470497 | MS.gene49310:CDS |
| GGTTTGAAATGGGGTGTATA+AGG | 0.212869 | 1.1:+52471809 | None:intergenic |
| AGCTTTGGTCCCAAACATTT+TGG | 0.213827 | 1.1:-52470523 | MS.gene49310:CDS |
| GCTGCGTGTGTATTATTATT+AGG | 0.225487 | 1.1:+52468855 | None:intergenic |
| GGTATCTTAATAAGGCTAAT+AGG | 0.226066 | 1.1:-52471437 | MS.gene49310:CDS |
| TCGGAAGTGTTTGGAGATTA+AGG | 0.232786 | 1.1:-52471286 | MS.gene49310:CDS |
| TAATAAGGCTAATAGGGTTT+TGG | 0.236340 | 1.1:-52471430 | MS.gene49310:CDS |
| GAGGAAGATAGTGAGGAGTT+AGG | 0.240509 | 1.1:-52471252 | MS.gene49310:CDS |
| ATGCTGCAGGTGTACTATTA+TGG | 0.241724 | 1.1:+52468793 | None:intergenic |
| GGCGCTTCCGTATTGTTTAA+AGG | 0.255513 | 1.1:-52471175 | MS.gene49310:CDS |
| GGTTATATCTACAACAATTT+GGG | 0.261299 | 1.1:-52470496 | MS.gene49310:CDS |
| GGGTGGTTGTTGTTGCTTAC+AGG | 0.274076 | 1.1:-52470601 | MS.gene49310:CDS |
| AGGAGTTAGGGAAAGGGAAT+AGG | 0.275680 | 1.1:-52471239 | MS.gene49310:CDS |
| GAGCATTTCTTGGGTTGTTT+TGG | 0.276205 | 1.1:+52471695 | None:intergenic |
| TCAGCAGCACTTTCCAAATA+AGG | 0.279505 | 1.1:+52470559 | None:intergenic |
| AAAAGTTTGCAGACTGTAAA+AGG | 0.282943 | 1.1:-52470828 | MS.gene49310:CDS |
| GGTTTAGCTGCATTGAAAAT+TGG | 0.289450 | 1.1:-52471627 | MS.gene49310:CDS |
| CGAATGCTTTGAGCATTTCT+TGG | 0.290758 | 1.1:+52471685 | None:intergenic |
| GTCTTAATTATGGTTTAAAT+AGG | 0.293303 | 1.1:-52471476 | MS.gene49310:CDS |
| TGTGTCAGGTTGGGAGTTAC+TGG | 0.296347 | 1.1:+52468770 | None:intergenic |
| AATAGGTTTAGTGATAGTTT+AGG | 0.302645 | 1.1:-52471459 | MS.gene49310:CDS |
| TCAAAGGCTTATGGTGATAT+TGG | 0.309390 | 1.1:-52470349 | MS.gene49310:CDS |
| AGGAAGATAGTGAGGAGTTA+GGG | 0.310369 | 1.1:-52471251 | MS.gene49310:CDS |
| ATAGGTTTAGTGATAGTTTA+GGG | 0.311847 | 1.1:-52471458 | MS.gene49310:CDS |
| TTAATGGGTAGTCTTAATTA+TGG | 0.322455 | 1.1:-52471486 | MS.gene49310:CDS |
| CAGAATCTTTCAAAGGCTTA+TGG | 0.327198 | 1.1:-52470358 | MS.gene49310:CDS |
| CCTCCGAGTGCTGCTCTTGT+GGG | 0.336592 | 1.1:+52470644 | None:intergenic |
| TATGTCAGGTTGGGAGTTAT+TGG | 0.341920 | 1.1:+52468830 | None:intergenic |
| AGGTGTTTAGAGATTTCTAT+TGG | 0.345983 | 1.1:-52470808 | MS.gene49310:CDS |
| GTATCTTAATAAGGCTAATA+GGG | 0.348444 | 1.1:-52471436 | MS.gene49310:CDS |
| AGGGTGGACATGGTTTGAAA+TGG | 0.351871 | 1.1:+52471798 | None:intergenic |
| GAGATACATACGAAGCGATT+AGG | 0.352147 | 1.1:-52471147 | MS.gene49310:CDS |
| GGCGTTGGAGCAGAATGTTT+TGG | 0.357994 | 1.1:-52471049 | MS.gene49310:CDS |
| AGAGAATCTTCGGAAGTGTT+TGG | 0.370920 | 1.1:-52471295 | MS.gene49310:CDS |
| GCGAATATGATGATTGCTTT+GGG | 0.375275 | 1.1:-52470964 | MS.gene49310:CDS |
| ATAACCAACTCCAAAATGTT+TGG | 0.376664 | 1.1:+52470513 | None:intergenic |
| CTTCTTGGGATTGTTTATAG+TGG | 0.378113 | 1.1:-52471090 | MS.gene49310:CDS |
| GGGTGGACATGGTTTGAAAT+GGG | 0.378368 | 1.1:+52471799 | None:intergenic |
| GTGTTTGTGTTGATGATGTT+AGG | 0.380305 | 1.1:-52471389 | MS.gene49310:CDS |
| GCGCATGATAGGAAGCTTCT+TGG | 0.385283 | 1.1:-52471105 | MS.gene49310:CDS |
| TAGTTTAGGGTATCTTAATA+AGG | 0.387240 | 1.1:-52471445 | MS.gene49310:CDS |
| GGAAATTTCATTCAATGAAA+AGG | 0.398867 | 1.1:-52471655 | MS.gene49310:CDS |
| CTTCTTCTGCACTTGCTCCA+TGG | 0.399591 | 1.1:+52468970 | None:intergenic |
| AGATACATACGAAGCGATTA+GGG | 0.403607 | 1.1:-52471146 | MS.gene49310:CDS |
| CCCTCCGAGTGCTGCTCTTG+TGG | 0.404697 | 1.1:+52470643 | None:intergenic |
| GTTTGAAATGGGGTGTATAA+GGG | 0.406264 | 1.1:+52471810 | None:intergenic |
| GCTATGAGTTTGCAGTTAAT+GGG | 0.407040 | 1.1:-52471501 | MS.gene49310:CDS |
| CTGTTGAGGTTGCGCATGAT+AGG | 0.407770 | 1.1:-52471116 | MS.gene49310:CDS |
| GGATGTCTGCTAAACTGTTC+GGG | 0.410647 | 1.1:+52468734 | None:intergenic |
| TGCGAATATGATGATTGCTT+TGG | 0.410869 | 1.1:-52470965 | MS.gene49310:CDS |
| GGGGTGTATAAGGGTTTGTT+GGG | 0.412378 | 1.1:+52471819 | None:intergenic |
| AGCAGCAAGTTATAGATGCT+TGG | 0.412778 | 1.1:-52468998 | MS.gene49310:CDS |
| AGCTCTTGTGCTTGTATCAA+TGG | 0.413035 | 1.1:-52470872 | MS.gene49310:CDS |
| GGAGTTAGGGAAAGGGAATA+GGG | 0.418677 | 1.1:-52471238 | MS.gene49310:CDS |
| TAACCAACTCCAAAATGTTT+GGG | 0.419203 | 1.1:+52470514 | None:intergenic |
| TGGGATTGTTTATAGTGGGA+TGG | 0.423640 | 1.1:-52471085 | MS.gene49310:CDS |
| GGAAGTGTATCTGCAAGAAT+AGG | 0.426493 | 1.1:-52470622 | MS.gene49310:CDS |
| GGGGAAAGCGTTATGTAATC+AGG | 0.427739 | 1.1:-52470851 | MS.gene49310:CDS |
| CGCATGATAGGAAGCTTCTT+GGG | 0.430357 | 1.1:-52471104 | MS.gene49310:CDS |
| GGGTGTATAAGGGTTTGTTG+GGG | 0.431964 | 1.1:+52471820 | None:intergenic |
| AGGATGTCTGCTAAACTGTT+CGG | 0.436022 | 1.1:+52468733 | None:intergenic |
| GCTCTTGTGCTTGTATCAAT+GGG | 0.440321 | 1.1:-52470871 | MS.gene49310:CDS |
| GAATGCTTTGAGCATTTCTT+GGG | 0.441209 | 1.1:+52471686 | None:intergenic |
| GGTGTATAAGGGTTTGTTGG+GGG | 0.442205 | 1.1:+52471821 | None:intergenic |
| AAGAGGCGCTAGAGAATCTT+CGG | 0.442376 | 1.1:-52471305 | MS.gene49310:CDS |
| GGTGTTTAGAGATTTCTATT+GGG | 0.444294 | 1.1:-52470807 | MS.gene49310:CDS |
| GGAAAGTGAAGAGCCTTCAT+AGG | 0.447539 | 1.1:+52468876 | None:intergenic |
| GATTGACGTGGCGGTGTGTC+AGG | 0.451015 | 1.1:+52468756 | None:intergenic |
| GCAGCAAGTTATAGATGCTT+GGG | 0.454415 | 1.1:-52468997 | MS.gene49310:CDS |
| TCATGCTGTGCAATTTGAGT+TGG | 0.455338 | 1.1:-52471358 | MS.gene49310:CDS |
| TGGGGTGTATAAGGGTTTGT+TGG | 0.456078 | 1.1:+52471818 | None:intergenic |
| TGCTGCAGGTGTACTATTAT+GGG | 0.459170 | 1.1:+52468794 | None:intergenic |
| GAAGTGTATCTGCAAGAATA+GGG | 0.459783 | 1.1:-52470621 | MS.gene49310:CDS |
| ATAGTGAGGAGTTAGGGAAA+GGG | 0.461155 | 1.1:-52471245 | MS.gene49310:CDS |
| AACTGCAAACTCATAGCATA+AGG | 0.469559 | 1.1:+52471507 | None:intergenic |
| CAAGAAATGCTCAAAGCATT+CGG | 0.480287 | 1.1:-52471684 | MS.gene49310:CDS |
| GTCAGCAGCGCAGATGTTTG+CGG | 0.481206 | 1.1:-52470443 | MS.gene49310:CDS |
| TTCTTGGGATTGTTTATAGT+GGG | 0.486322 | 1.1:-52471089 | MS.gene49310:CDS |
| AGAAACCTCCATGATATCCT+TGG | 0.489502 | 1.1:+52470417 | None:intergenic |
| TCATTCAATGAAAAGGAGCT+TGG | 0.491295 | 1.1:-52471648 | MS.gene49310:CDS |
| GCTAATGTTAAGACGGCGAT+GGG | 0.491334 | 1.1:-52471336 | MS.gene49310:CDS |
| TTTGGGTAGGTTAGAGAATG+AGG | 0.492492 | 1.1:-52471412 | MS.gene49310:CDS |
| GAACGGTTGAAAGAGAGCTT+TGG | 0.492632 | 1.1:-52470538 | MS.gene49310:CDS |
| GTTGTTGTTGCTTACAGGTA+AGG | 0.496912 | 1.1:-52470596 | MS.gene49310:CDS |
| TGCAAATGAGGTTCCTATGA+AGG | 0.499756 | 1.1:-52468889 | MS.gene49310:CDS |
| ACGAGCAAGATGAGAGAAGA+AGG | 0.502527 | 1.1:+52471899 | None:intergenic |
| GAAGAATTGGAATCTCAGTT+CGG | 0.503248 | 1.1:-52471013 | MS.gene49310:CDS |
| GATGTAACGGTATGTCAGGT+TGG | 0.504036 | 1.1:+52468820 | None:intergenic |
| GATAGTGAGGAGTTAGGGAA+AGG | 0.510103 | 1.1:-52471246 | MS.gene49310:CDS |
| CTGCGATTTCGTTGCTGAAG+AGG | 0.511189 | 1.1:-52470690 | MS.gene49310:CDS |
| ATGTAACGGTATGTCAGGTT+GGG | 0.511251 | 1.1:+52468821 | None:intergenic |
| TTGGGTAGGTTAGAGAATGA+GGG | 0.511672 | 1.1:-52471411 | MS.gene49310:CDS |
| ACGTGGCGGTGTGTCAGGTT+GGG | 0.514066 | 1.1:+52468761 | None:intergenic |
| GCTCAAAGCATTCGGTGAGA+TGG | 0.514737 | 1.1:-52471676 | MS.gene49310:CDS |
| GATATCATGGAGGTTTCTCT+TGG | 0.517703 | 1.1:-52470412 | MS.gene49310:CDS |
| GTTCATAGTTTCATATAGCA+TGG | 0.522310 | 1.1:+52470723 | None:intergenic |
| GATTGTTTATAGTGGGATGG+AGG | 0.522341 | 1.1:-52471082 | MS.gene49310:CDS |
| GACGTGGCGGTGTGTCAGGT+TGG | 0.523342 | 1.1:+52468760 | None:intergenic |
| TGCGATTTCGTTGCTGAAGA+GGG | 0.530007 | 1.1:-52470689 | MS.gene49310:CDS |
| TGCGGTAGCCAAGGATATCA+TGG | 0.531067 | 1.1:-52470425 | MS.gene49310:CDS |
| CCGCGGTGTCTCTGCAAATG+AGG | 0.535152 | 1.1:-52468901 | MS.gene49310:CDS |
| TGTCTAGGAGAGATTTGAGT+GGG | 0.536028 | 1.1:+52471765 | None:intergenic |
| GAAAGGGAATAGGGATTTAG+CGG | 0.537665 | 1.1:-52471229 | MS.gene49310:CDS |
| GCTTACAGGTAAGGTGAAGC+AGG | 0.537806 | 1.1:-52470587 | MS.gene49310:CDS |
| GGAAGTTTCTGAGGCATACT+CGG | 0.541766 | 1.1:-52470752 | MS.gene49310:CDS |
| GGTGGACATGGTTTGAAATG+GGG | 0.545688 | 1.1:+52471800 | None:intergenic |
| CTATTATGGGATTGATGTAA+CGG | 0.547602 | 1.1:+52468807 | None:intergenic |
| GAAACTCAATTGCAAGGGAA+TGG | 0.548823 | 1.1:+52469021 | None:intergenic |
| CCACAAGAGCAGCACTCGGA+GGG | 0.552886 | 1.1:-52470643 | MS.gene49310:CDS |
| GGAGGATCATGAGAAGGCGT+TGG | 0.552931 | 1.1:-52471064 | MS.gene49310:CDS |
| TGAGTTGGCTAATGTTAAGA+CGG | 0.567694 | 1.1:-52471343 | MS.gene49310:CDS |
| GATTGATGTAACGGTATGTC+AGG | 0.570067 | 1.1:+52468816 | None:intergenic |
| GGCGATGGGGAGGAGAGAAG+AGG | 0.570707 | 1.1:-52471322 | MS.gene49310:CDS |
| TCTAACGCCTTTAAACAATA+CGG | 0.571467 | 1.1:+52471168 | None:intergenic |
| AGCATGTCAGAATCTTTCAA+AGG | 0.573306 | 1.1:-52470365 | MS.gene49310:CDS |
| GGCTAATGTTAAGACGGCGA+TGG | 0.573411 | 1.1:-52471337 | MS.gene49310:CDS |
| GGGAGATACGATGAAGCTGT+TGG | 0.573991 | 1.1:-52470943 | MS.gene49310:CDS |
| GCTGCTGAAACTCAATTGCA+AGG | 0.574173 | 1.1:+52469015 | None:intergenic |
| AATTGCACAGCATGAAGCAC+AGG | 0.576090 | 1.1:+52471366 | None:intergenic |
| GTTATATCTACAACAATTTG+GGG | 0.576788 | 1.1:-52470495 | MS.gene49310:CDS |
| AGGCTTATGGTGATATTGGA+AGG | 0.580409 | 1.1:-52470345 | MS.gene49310:intron |
| CTGCTGAAACTCAATTGCAA+GGG | 0.582844 | 1.1:+52469016 | None:intergenic |
| ATTAGGGATGAATTCTGTTG+AGG | 0.587352 | 1.1:-52471130 | MS.gene49310:CDS |
| CTCATTTGCAGAGACACCGC+GGG | 0.591950 | 1.1:+52468902 | None:intergenic |
| TACACCGGTGGAAGTTTCTG+AGG | 0.595722 | 1.1:-52470761 | MS.gene49310:CDS |
| ATGTTAAGACGGCGATGGGG+AGG | 0.595931 | 1.1:-52471332 | MS.gene49310:CDS |
| GCAGATGTTTGCGGTAGCCA+AGG | 0.596662 | 1.1:-52470434 | MS.gene49310:CDS |
| GGTCTTAAGCTTGATCGTGA+AGG | 0.602523 | 1.1:-52471606 | MS.gene49310:CDS |
| TGGGAGTTACTGGATGCTGC+AGG | 0.602801 | 1.1:+52468780 | None:intergenic |
| AACATCTGCGCTGCTGACTG+AGG | 0.607323 | 1.1:+52470448 | None:intergenic |
| GCTCCCACAAGAGCAGCACT+CGG | 0.608859 | 1.1:-52470647 | MS.gene49310:CDS |
| ATAGATGCTTGGGAAAGCCA+TGG | 0.619820 | 1.1:-52468987 | MS.gene49310:CDS |
| ATTTGGAAAGTGCTGCTGAA+CGG | 0.624374 | 1.1:-52470555 | MS.gene49310:CDS |
| TCGCGGAGAGGAGAGAGAGA+AGG | 0.627138 | 1.1:+52471867 | None:intergenic |
| TAAACTGTTCGGGATTGACG+TGG | 0.629660 | 1.1:+52468744 | None:intergenic |
| TGGGATGGAGGATCATGAGA+AGG | 0.633696 | 1.1:-52471070 | MS.gene49310:CDS |
| TTTAGCGGAAGCTTATGTTG+CGG | 0.637589 | 1.1:-52471214 | MS.gene49310:CDS |
| CCCACAAGAGCAGCACTCGG+AGG | 0.640444 | 1.1:-52470644 | MS.gene49310:CDS |
| TAAGCTTGATCGTGAAGGTG+AGG | 0.642260 | 1.1:-52471601 | MS.gene49310:CDS |
| AAGAGAACAGATTACACCGG+TGG | 0.642489 | 1.1:-52470773 | MS.gene49310:CDS |
| CGAATATGATGATTGCTTTG+GGG | 0.644617 | 1.1:-52470963 | MS.gene49310:CDS |
| TCAATTGTATCTGCATGATG+TGG | 0.648031 | 1.1:+52470388 | None:intergenic |
| ACTGTTCGGGATTGACGTGG+CGG | 0.661175 | 1.1:+52468747 | None:intergenic |
| TTGTCTAGGAGAGATTTGAG+TGG | 0.661188 | 1.1:+52471764 | None:intergenic |
| TTGATGGATGCATCGCGGAG+AGG | 0.665367 | 1.1:+52471855 | None:intergenic |
| TATGCCTCAGAAACTTCCAC+CGG | 0.674657 | 1.1:+52470757 | None:intergenic |
| GTGTATCTGCAAGAATAGGG+TGG | 0.702061 | 1.1:-52470618 | MS.gene49310:CDS |
| CCTCATTTGCAGAGACACCG+CGG | 0.706770 | 1.1:+52468901 | None:intergenic |
| CTCTTGTGCTTGTATCAATG+GGG | 0.708946 | 1.1:-52470870 | MS.gene49310:CDS |
| TAAAAGAGAACAGATTACAC+CGG | 0.715171 | 1.1:-52470776 | MS.gene49310:CDS |
| TTATATCTACAACAATTTGG+GGG | 0.722117 | 1.1:-52470494 | MS.gene49310:CDS |
| GAGGGTTGATGGATGCATCG+CGG | 0.733291 | 1.1:+52471850 | None:intergenic |
| CTAATGTTAAGACGGCGATG+GGG | 0.738436 | 1.1:-52471335 | MS.gene49310:CDS |
| GGTAGCCAAGGATATCATGG+AGG | 0.746203 | 1.1:-52470422 | MS.gene49310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTATTTCATTATTTAGAT+CGG | - | chr1.1:52471262-52471281 | MS.gene49310:CDS | 15.0% |
| !! | CTTGAATTACAAAAATATTT+AGG | - | chr1.1:52471389-52471408 | MS.gene49310:CDS | 15.0% |
| !! | TTACAAAAATATTTAGGAAT+CGG | - | chr1.1:52471395-52471414 | MS.gene49310:CDS | 15.0% |
| !! | AATTCAAGTACATACTATAT+AGG | + | chr1.1:52471377-52471396 | None:intergenic | 20.0% |
| !! | GTCTTAATTATGGTTTAAAT+AGG | - | chr1.1:52469191-52469210 | MS.gene49310:intron | 20.0% |
| !!! | AACAATTATTTTGAGACTTA+AGG | - | chr1.1:52470502-52470521 | MS.gene49310:CDS | 20.0% |
| !!! | ATAAAACTTAGTTTGATAGA+TGG | + | chr1.1:52470961-52470980 | None:intergenic | 20.0% |
| !!! | CAGTTTAAACATTTAACTTT+TGG | - | chr1.1:52470442-52470461 | MS.gene49310:CDS | 20.0% |
| !!! | TTCATGTTTTCCTAAAATAT+TGG | - | chr1.1:52471615-52471634 | MS.gene49310:CDS | 20.0% |
| ! | AAAAATATTTAGGAATCGGA+AGG | - | chr1.1:52471399-52471418 | MS.gene49310:CDS | 25.0% |
| ! | AATAGGTTTAGTGATAGTTT+AGG | - | chr1.1:52469208-52469227 | MS.gene49310:intron | 25.0% |
| ! | ATAGGTTTAGTGATAGTTTA+GGG | - | chr1.1:52469209-52469228 | MS.gene49310:intron | 25.0% |
| ! | CTGCTTTCAAAAGAAAAATT+AGG | - | chr1.1:52470628-52470647 | MS.gene49310:CDS | 25.0% |
| ! | GGAAATTTCATTCAATGAAA+AGG | - | chr1.1:52469012-52469031 | MS.gene49310:CDS | 25.0% |
| ! | GGTTATATCTACAACAATTT+GGG | - | chr1.1:52470171-52470190 | MS.gene49310:intron | 25.0% |
| ! | GTATCTTAATAAGGCTAATA+GGG | - | chr1.1:52469231-52469250 | MS.gene49310:intron | 25.0% |
| ! | GTTATATCTACAACAATTTG+GGG | - | chr1.1:52470172-52470191 | MS.gene49310:intron | 25.0% |
| ! | TGGTTATATCTACAACAATT+TGG | - | chr1.1:52470170-52470189 | MS.gene49310:intron | 25.0% |
| ! | TTATATCTACAACAATTTGG+GGG | - | chr1.1:52470173-52470192 | MS.gene49310:intron | 25.0% |
| ! | TTTCATATAAGTAGCTATGT+TGG | - | chr1.1:52470747-52470766 | MS.gene49310:CDS | 25.0% |
| !! | AACTGTATATGTTTTTCCAA+CGG | - | chr1.1:52471587-52471606 | MS.gene49310:CDS | 25.0% |
| !! | TAGTTTAGGGTATCTTAATA+AGG | - | chr1.1:52469222-52469241 | MS.gene49310:intron | 25.0% |
| !! | TTAATGGGTAGTCTTAATTA+TGG | - | chr1.1:52469181-52469200 | MS.gene49310:intron | 25.0% |
| !!! | ATCAATGTTTTGCTTGTTTT+TGG | - | chr1.1:52471227-52471246 | MS.gene49310:CDS | 25.0% |
| !!! | ATTATTTTGAGACTTAAGGA+TGG | - | chr1.1:52470506-52470525 | MS.gene49310:CDS | 25.0% |
| AAAAGTTTGCAGACTGTAAA+AGG | - | chr1.1:52469839-52469858 | MS.gene49310:intron | 30.0% | |
| AAACCAAGAGAAACAATATC+AGG | + | chr1.1:52470379-52470398 | None:intergenic | 30.0% | |
| AACCAAGAGAAACAATATCA+GGG | + | chr1.1:52470378-52470397 | None:intergenic | 30.0% | |
| AAGAAAAATTAGGCTGTGTT+TGG | - | chr1.1:52470638-52470657 | MS.gene49310:CDS | 30.0% | |
| AAGCACATTATCCAAAAAGA+AGG | + | chr1.1:52471528-52471547 | None:intergenic | 30.0% | |
| AGCACATTATCCAAAAAGAA+GGG | + | chr1.1:52471527-52471546 | None:intergenic | 30.0% | |
| AGGTGTTTAGAGATTTCTAT+TGG | - | chr1.1:52469859-52469878 | MS.gene49310:intron | 30.0% | |
| ATAACCAACTCCAAAATGTT+TGG | + | chr1.1:52470157-52470176 | None:intergenic | 30.0% | |
| ATCTTGAGTACAAAGAGTTA+TGG | - | chr1.1:52471151-52471170 | MS.gene49310:CDS | 30.0% | |
| CTATTATGGGATTGATGTAA+CGG | + | chr1.1:52471863-52471882 | None:intergenic | 30.0% | |
| GGTATCTTAATAAGGCTAAT+AGG | - | chr1.1:52469230-52469249 | MS.gene49310:intron | 30.0% | |
| GGTGTTTAGAGATTTCTATT+GGG | - | chr1.1:52469860-52469879 | MS.gene49310:intron | 30.0% | |
| GTTCATAGTTTCATATAGCA+TGG | + | chr1.1:52469947-52469966 | None:intergenic | 30.0% | |
| TAAAAGAGAACAGATTACAC+CGG | - | chr1.1:52469891-52469910 | MS.gene49310:intron | 30.0% | |
| TAACCAACTCCAAAATGTTT+GGG | + | chr1.1:52470156-52470175 | None:intergenic | 30.0% | |
| TCTAACGCCTTTAAACAATA+CGG | + | chr1.1:52469502-52469521 | None:intergenic | 30.0% | |
| TCTCAAAATAATTGTTCCAC+TGG | + | chr1.1:52470498-52470517 | None:intergenic | 30.0% | |
| TTATGAGCATAGCATGAATA+AGG | + | chr1.1:52470899-52470918 | None:intergenic | 30.0% | |
| TTCTTGGGATTGTTTATAGT+GGG | - | chr1.1:52469578-52469597 | MS.gene49310:intron | 30.0% | |
| ! | AATAAGGCTAATAGGGTTTT+GGG | - | chr1.1:52469238-52469257 | MS.gene49310:intron | 30.0% |
| ! | GAAAACATGAATTTTTCCGT+TGG | + | chr1.1:52471606-52471625 | None:intergenic | 30.0% |
| ! | TAATAAGGCTAATAGGGTTT+TGG | - | chr1.1:52469237-52469256 | MS.gene49310:intron | 30.0% |
| !! | ATTCTGCAAACAATTGGTTT+TGG | - | chr1.1:52470403-52470422 | MS.gene49310:CDS | 30.0% |
| !! | TTGTTGATTCTGCAAACAAT+TGG | - | chr1.1:52470397-52470416 | MS.gene49310:CDS | 30.0% |
| !!! | TGTTGCGGTTTTGAATTTTA+AGG | - | chr1.1:52469468-52469487 | MS.gene49310:intron | 30.0% |
| !!! | TTCTGCAAACAATTGGTTTT+GGG | - | chr1.1:52470404-52470423 | MS.gene49310:CDS | 30.0% |
| AACTATATGAGAGGTAGACA+TGG | + | chr1.1:52470934-52470953 | None:intergenic | 35.0% | |
| AACTGCAAACTCATAGCATA+AGG | + | chr1.1:52469163-52469182 | None:intergenic | 35.0% | |
| AATCTGAATCCCACACTATT+AGG | + | chr1.1:52470475-52470494 | None:intergenic | 35.0% | |
| AGATACATACGAAGCGATTA+GGG | - | chr1.1:52469521-52469540 | MS.gene49310:intron | 35.0% | |
| AGCATGTCAGAATCTTTCAA+AGG | - | chr1.1:52470302-52470321 | MS.gene49310:intron | 35.0% | |
| AGCTATTCCATGTGCAATTA+TGG | + | chr1.1:52471184-52471203 | None:intergenic | 35.0% | |
| AGGTAGACATGGAAACTAAA+AGG | + | chr1.1:52470923-52470942 | None:intergenic | 35.0% | |
| ATATGCAATTGAGCTCGAAA+TGG | + | chr1.1:52471289-52471308 | None:intergenic | 35.0% | |
| ATTAGGGATGAATTCTGTTG+AGG | - | chr1.1:52469537-52469556 | MS.gene49310:intron | 35.0% | |
| CAATTAAAGAAAAAAGCCCG+CGG | - | chr1.1:52471749-52471768 | MS.gene49310:CDS | 35.0% | |
| CAGAATCTTTCAAAGGCTTA+TGG | - | chr1.1:52470309-52470328 | MS.gene49310:intron | 35.0% | |
| CGAATATGATGATTGCTTTG+GGG | - | chr1.1:52469704-52469723 | MS.gene49310:intron | 35.0% | |
| CTGACATAAAATAGAGTGCA+GGG | - | chr1.1:52470561-52470580 | MS.gene49310:CDS | 35.0% | |
| CTTCTTGGGATTGTTTATAG+TGG | - | chr1.1:52469577-52469596 | MS.gene49310:intron | 35.0% | |
| GAAGAATTGGAATCTCAGTT+CGG | - | chr1.1:52469654-52469673 | MS.gene49310:intron | 35.0% | |
| GAAGTGTATCTGCAAGAATA+GGG | - | chr1.1:52470046-52470065 | MS.gene49310:intron | 35.0% | |
| GATGGAAAGAACTATATGAG+AGG | + | chr1.1:52470943-52470962 | None:intergenic | 35.0% | |
| GCGAATATGATGATTGCTTT+GGG | - | chr1.1:52469703-52469722 | MS.gene49310:intron | 35.0% | |
| GCTATGAGTTTGCAGTTAAT+GGG | - | chr1.1:52469166-52469185 | MS.gene49310:intron | 35.0% | |
| GCTATTCCATGTGCAATTAT+GGG | + | chr1.1:52471183-52471202 | None:intergenic | 35.0% | |
| GCTGCGTGTGTATTATTATT+AGG | + | chr1.1:52471815-52471834 | None:intergenic | 35.0% | |
| GGACATATACCTAATAGTGT+GGG | - | chr1.1:52470463-52470482 | MS.gene49310:CDS | 35.0% | |
| GGTTTAGCTGCATTGAAAAT+TGG | - | chr1.1:52469040-52469059 | MS.gene49310:intron | 35.0% | |
| TAAGAACTAGCAACAGTGTT+TGG | + | chr1.1:52470837-52470856 | None:intergenic | 35.0% | |
| TATGGTGATATTGGAAGGTA+TGG | - | chr1.1:52470327-52470346 | MS.gene49310:intron | 35.0% | |
| TCAAAGGCTTATGGTGATAT+TGG | - | chr1.1:52470318-52470337 | MS.gene49310:intron | 35.0% | |
| TCAAATAAGCCATTCCAAAC+AGG | - | chr1.1:52470872-52470891 | MS.gene49310:CDS | 35.0% | |
| TCAATTGTATCTGCATGATG+TGG | + | chr1.1:52470282-52470301 | None:intergenic | 35.0% | |
| TCATTCAATGAAAAGGAGCT+TGG | - | chr1.1:52469019-52469038 | MS.gene49310:CDS | 35.0% | |
| TCTGACATAAAATAGAGTGC+AGG | - | chr1.1:52470560-52470579 | MS.gene49310:CDS | 35.0% | |
| TGCGAATATGATGATTGCTT+TGG | - | chr1.1:52469702-52469721 | MS.gene49310:intron | 35.0% | |
| TGCTATGAGTTTGCAGTTAA+TGG | - | chr1.1:52469165-52469184 | MS.gene49310:intron | 35.0% | |
| TGGACATATACCTAATAGTG+TGG | - | chr1.1:52470462-52470481 | MS.gene49310:CDS | 35.0% | |
| ! | AATTTAGACTTGGTTGTTCC+CGG | - | chr1.1:52471425-52471444 | MS.gene49310:CDS | 35.0% |
| ! | CAAGAAATGCTCAAAGCATT+CGG | - | chr1.1:52468983-52469002 | MS.gene49310:CDS | 35.0% |
| ! | CGGAAGGTATAATTTAGACT+TGG | - | chr1.1:52471415-52471434 | MS.gene49310:CDS | 35.0% |
| ! | GAATGCTTTGAGCATTTCTT+GGG | + | chr1.1:52468984-52469003 | None:intergenic | 35.0% |
| ! | GATTAAGGAGATGACTTTTG+AGG | - | chr1.1:52469396-52469415 | MS.gene49310:intron | 35.0% |
| ! | GGCTGCAATTCCAATATTTT+AGG | + | chr1.1:52471628-52471647 | None:intergenic | 35.0% |
| ! | GTTTGAAATGGGGTGTATAA+GGG | + | chr1.1:52468860-52468879 | None:intergenic | 35.0% |
| ! | TGAGTTGGCTAATGTTAAGA+CGG | - | chr1.1:52469324-52469343 | MS.gene49310:intron | 35.0% |
| ! | TGTTTGGAATGGCTTATTTG+AGG | + | chr1.1:52470873-52470892 | None:intergenic | 35.0% |
| ! | TTCCCTGATATTGTTTCTCT+TGG | - | chr1.1:52470373-52470392 | MS.gene49310:CDS | 35.0% |
| !! | CGCAGAAGATTTTGAAGAAT+TGG | - | chr1.1:52469641-52469660 | MS.gene49310:intron | 35.0% |
| !! | GCAAATTCAAGAGCTTTTTC+AGG | + | chr1.1:52469094-52469113 | None:intergenic | 35.0% |
| !! | GTGTTTGTGTTGATGATGTT+AGG | - | chr1.1:52469278-52469297 | MS.gene49310:intron | 35.0% |
| !!! | TGCGGTTTTGAATTTTAAGG+AGG | - | chr1.1:52469471-52469490 | MS.gene49310:intron | 35.0% |
| !!! | TTGTTTCTGTCCCTTCTTTT+TGG | - | chr1.1:52471514-52471533 | MS.gene49310:CDS | 35.0% |
| ACACCAAATCAGAACTCTCT+TGG | + | chr1.1:52471037-52471056 | None:intergenic | 40.0% | |
| AGAAACCTCCATGATATCCT+TGG | + | chr1.1:52470253-52470272 | None:intergenic | 40.0% | |
| AGCAGCAAGTTATAGATGCT+TGG | - | chr1.1:52471669-52471688 | MS.gene49310:CDS | 40.0% | |
| AGCATGAATAAGGACCTGTT+TGG | + | chr1.1:52470889-52470908 | None:intergenic | 40.0% | |
| AGCTCTTGTGCTTGTATCAA+TGG | - | chr1.1:52469795-52469814 | MS.gene49310:intron | 40.0% | |
| AGGAAGATAGTGAGGAGTTA+GGG | - | chr1.1:52469416-52469435 | MS.gene49310:intron | 40.0% | |
| AGGCTTATGGTGATATTGGA+AGG | - | chr1.1:52470322-52470341 | MS.gene49310:intron | 40.0% | |
| ATAGTGAGGAGTTAGGGAAA+GGG | - | chr1.1:52469422-52469441 | MS.gene49310:intron | 40.0% | |
| ATGCTGCAGGTGTACTATTA+TGG | + | chr1.1:52471877-52471896 | None:intergenic | 40.0% | |
| ATGTAACGGTATGTCAGGTT+GGG | + | chr1.1:52471849-52471868 | None:intergenic | 40.0% | |
| CTCTTGTGCTTGTATCAATG+GGG | - | chr1.1:52469797-52469816 | MS.gene49310:intron | 40.0% | |
| CTGCTGAAACTCAATTGCAA+GGG | + | chr1.1:52471654-52471673 | None:intergenic | 40.0% | |
| GAAACTCAATTGCAAGGGAA+TGG | + | chr1.1:52471649-52471668 | None:intergenic | 40.0% | |
| GAAAGGGAATAGGGATTTAG+CGG | - | chr1.1:52469438-52469457 | MS.gene49310:intron | 40.0% | |
| GAAGCAGGCTATTCCTTATT+TGG | - | chr1.1:52470095-52470114 | MS.gene49310:intron | 40.0% | |
| GAATAAGGACCTGTTTGGAA+TGG | + | chr1.1:52470884-52470903 | None:intergenic | 40.0% | |
| GAGATACATACGAAGCGATT+AGG | - | chr1.1:52469520-52469539 | MS.gene49310:intron | 40.0% | |
| GAGCACAGAAGAGAATATAG+TGG | + | chr1.1:52471013-52471032 | None:intergenic | 40.0% | |
| GATATCATGGAGGTTTCTCT+TGG | - | chr1.1:52470255-52470274 | MS.gene49310:intron | 40.0% | |
| GATTGATGTAACGGTATGTC+AGG | + | chr1.1:52471854-52471873 | None:intergenic | 40.0% | |
| GCAGCAAGTTATAGATGCTT+GGG | - | chr1.1:52471670-52471689 | MS.gene49310:CDS | 40.0% | |
| GCTCTTGTGCTTGTATCAAT+GGG | - | chr1.1:52469796-52469815 | MS.gene49310:intron | 40.0% | |
| TCAACGTAACATACTGTGAG+TGG | - | chr1.1:52471480-52471499 | MS.gene49310:CDS | 40.0% | |
| TCAGCAGCACTTTCCAAATA+AGG | + | chr1.1:52470111-52470130 | None:intergenic | 40.0% | |
| TCATGCTGTGCAATTTGAGT+TGG | - | chr1.1:52469309-52469328 | MS.gene49310:intron | 40.0% | |
| TGCAAATGAGGTTCCTATGA+AGG | - | chr1.1:52471778-52471797 | MS.gene49310:CDS | 40.0% | |
| TGCTGCAGGTGTACTATTAT+GGG | + | chr1.1:52471876-52471895 | None:intergenic | 40.0% | |
| TGTCTAGGAGAGATTTGAGT+GGG | + | chr1.1:52468905-52468924 | None:intergenic | 40.0% | |
| TTGGGTAGGTTAGAGAATGA+GGG | - | chr1.1:52469256-52469275 | MS.gene49310:intron | 40.0% | |
| TTGTCTAGGAGAGATTTGAG+TGG | + | chr1.1:52468906-52468925 | None:intergenic | 40.0% | |
| TTTAGCGGAAGCTTATGTTG+CGG | - | chr1.1:52469453-52469472 | MS.gene49310:intron | 40.0% | |
| TTTGGGTAGGTTAGAGAATG+AGG | - | chr1.1:52469255-52469274 | MS.gene49310:intron | 40.0% | |
| ! | CGAATGCTTTGAGCATTTCT+TGG | + | chr1.1:52468985-52469004 | None:intergenic | 40.0% |
| ! | GATTGTTTATAGTGGGATGG+AGG | - | chr1.1:52469585-52469604 | MS.gene49310:intron | 40.0% |
| ! | GGAAGTGTATCTGCAAGAAT+AGG | - | chr1.1:52470045-52470064 | MS.gene49310:intron | 40.0% |
| ! | GGTTTGAAATGGGGTGTATA+AGG | + | chr1.1:52468861-52468880 | None:intergenic | 40.0% |
| ! | GTTGTTGTTGCTTACAGGTA+AGG | - | chr1.1:52470071-52470090 | MS.gene49310:intron | 40.0% |
| ! | TCACCAAGAGAGTTCTGATT+TGG | - | chr1.1:52471031-52471050 | MS.gene49310:CDS | 40.0% |
| ! | TCGATGATTTTGCGTTGTCT+AGG | + | chr1.1:52468920-52468939 | None:intergenic | 40.0% |
| ! | TGGGATTGTTTATAGTGGGA+TGG | - | chr1.1:52469582-52469601 | MS.gene49310:intron | 40.0% |
| !! | AGAGAATCTTCGGAAGTGTT+TGG | - | chr1.1:52469372-52469391 | MS.gene49310:intron | 40.0% |
| !! | AGCTTTGGTCCCAAACATTT+TGG | - | chr1.1:52470144-52470163 | MS.gene49310:intron | 40.0% |
| !! | ATTTGGAAAGTGCTGCTGAA+CGG | - | chr1.1:52470112-52470131 | MS.gene49310:intron | 40.0% |
| !! | GACTTTTGAGGAAGATAGTG+AGG | - | chr1.1:52469408-52469427 | MS.gene49310:intron | 40.0% |
| !! | GAGAGATTTGAGTGGGTTTT+TGG | + | chr1.1:52468898-52468917 | None:intergenic | 40.0% |
| !! | GAGCATTTCTTGGGTTGTTT+TGG | + | chr1.1:52468975-52468994 | None:intergenic | 40.0% |
| !! | TATGTCAGGTTGGGAGTTAT+TGG | + | chr1.1:52471840-52471859 | None:intergenic | 40.0% |
| !! | TCGGAAGTGTTTGGAGATTA+AGG | - | chr1.1:52469381-52469400 | MS.gene49310:intron | 40.0% |
| !! | TTGAGTGGGTTTTTGGATGA+GGG | + | chr1.1:52468891-52468910 | None:intergenic | 40.0% |
| !! | TTTGAGTGGGTTTTTGGATG+AGG | + | chr1.1:52468892-52468911 | None:intergenic | 40.0% |
| !!! | CATTTCTTGGGTTGTTTTGG+CGG | + | chr1.1:52468972-52468991 | None:intergenic | 40.0% |
| AAGAGAACAGATTACACCGG+TGG | - | chr1.1:52469894-52469913 | MS.gene49310:intron | 45.0% | |
| AATTGCACAGCATGAAGCAC+AGG | + | chr1.1:52469304-52469323 | None:intergenic | 45.0% | |
| ACGAGCAAGATGAGAGAAGA+AGG | + | chr1.1:52468771-52468790 | None:intergenic | 45.0% | |
| AGGAGTTAGGGAAAGGGAAT+AGG | - | chr1.1:52469428-52469447 | MS.gene49310:intron | 45.0% | |
| AGGGTGGACATGGTTTGAAA+TGG | + | chr1.1:52468872-52468891 | None:intergenic | 45.0% | |
| ATAGATGCTTGGGAAAGCCA+TGG | - | chr1.1:52471680-52471699 | MS.gene49310:CDS | 45.0% | |
| CGCATGATAGGAAGCTTCTT+GGG | - | chr1.1:52469563-52469582 | MS.gene49310:intron | 45.0% | |
| CTAATGTTAAGACGGCGATG+GGG | - | chr1.1:52469332-52469351 | MS.gene49310:intron | 45.0% | |
| CTTTACGAGAACCTCTGAAC+CGG | + | chr1.1:52471447-52471466 | None:intergenic | 45.0% | |
| GAACGGTTGAAAGAGAGCTT+TGG | - | chr1.1:52470129-52470148 | MS.gene49310:intron | 45.0% | |
| GAGGAAGATAGTGAGGAGTT+AGG | - | chr1.1:52469415-52469434 | MS.gene49310:intron | 45.0% | |
| GATAGTGAGGAGTTAGGGAA+AGG | - | chr1.1:52469421-52469440 | MS.gene49310:intron | 45.0% | |
| GATGTAACGGTATGTCAGGT+TGG | + | chr1.1:52471850-52471869 | None:intergenic | 45.0% | |
| GCTAATGTTAAGACGGCGAT+GGG | - | chr1.1:52469331-52469350 | MS.gene49310:intron | 45.0% | |
| GCTGCTGAAACTCAATTGCA+AGG | + | chr1.1:52471655-52471674 | None:intergenic | 45.0% | |
| GGAAAGTGAAGAGCCTTCAT+AGG | + | chr1.1:52471794-52471813 | None:intergenic | 45.0% | |
| GGAGTTAGGGAAAGGGAATA+GGG | - | chr1.1:52469429-52469448 | MS.gene49310:intron | 45.0% | |
| GGCGCTTCCGTATTGTTTAA+AGG | - | chr1.1:52469492-52469511 | MS.gene49310:intron | 45.0% | |
| GGTCTTAAGCTTGATCGTGA+AGG | - | chr1.1:52469061-52469080 | MS.gene49310:intron | 45.0% | |
| GTGTATCTGCAAGAATAGGG+TGG | - | chr1.1:52470049-52470068 | MS.gene49310:intron | 45.0% | |
| TAAACTGTTCGGGATTGACG+TGG | + | chr1.1:52471926-52471945 | None:intergenic | 45.0% | |
| TAAGCTTGATCGTGAAGGTG+AGG | - | chr1.1:52469066-52469085 | MS.gene49310:intron | 45.0% | |
| TATGCCTCAGAAACTTCCAC+CGG | + | chr1.1:52469913-52469932 | None:intergenic | 45.0% | |
| TGCGATTTCGTTGCTGAAGA+GGG | - | chr1.1:52469978-52469997 | MS.gene49310:intron | 45.0% | |
| TGGGGTGTATAAGGGTTTGT+TGG | + | chr1.1:52468852-52468871 | None:intergenic | 45.0% | |
| TTTACGAGAACCTCTGAACC+GGG | + | chr1.1:52471446-52471465 | None:intergenic | 45.0% | |
| ! | GGGGTGTATAAGGGTTTGTT+GGG | + | chr1.1:52468851-52468870 | None:intergenic | 45.0% |
| ! | GGGTGGACATGGTTTGAAAT+GGG | + | chr1.1:52468871-52468890 | None:intergenic | 45.0% |
| ! | GGTGGACATGGTTTGAAATG+GGG | + | chr1.1:52468870-52468889 | None:intergenic | 45.0% |
| ! | GTTTGTTGGGGGTGAAAAGA+GGG | + | chr1.1:52468838-52468857 | None:intergenic | 45.0% |
| ! | TTTTTGGATGAGGGTGGACA+TGG | + | chr1.1:52468882-52468901 | None:intergenic | 45.0% |
| !! | AAGAGGCGCTAGAGAATCTT+CGG | - | chr1.1:52469362-52469381 | MS.gene49310:intron | 45.0% |
| !! | GGAAGTTTCTGAGGCATACT+CGG | - | chr1.1:52469915-52469934 | MS.gene49310:intron | 45.0% |
| !! | GGGGAAAGCGTTATGTAATC+AGG | - | chr1.1:52469816-52469835 | MS.gene49310:intron | 45.0% |
| !! | GGGTGTATAAGGGTTTGTTG+GGG | + | chr1.1:52468850-52468869 | None:intergenic | 45.0% |
| !! | GGTGTATAAGGGTTTGTTGG+GGG | + | chr1.1:52468849-52468868 | None:intergenic | 45.0% |
| !!! | AGGCTAATAGGGTTTTGGGT+AGG | - | chr1.1:52469242-52469261 | MS.gene49310:intron | 45.0% |
| !!! | GGTCCCAAACATTTTGGAGT+TGG | - | chr1.1:52470150-52470169 | MS.gene49310:intron | 45.0% |
| CCATGTGCAATTATGGGCTC+AGG | + | chr1.1:52471177-52471196 | None:intergenic | 50.0% | |
| CCTGAGCCCATAATTGCACA+TGG | - | chr1.1:52471174-52471193 | MS.gene49310:CDS | 50.0% | |
| CGGTTCAGAGGTTCTCGTAA+AGG | - | chr1.1:52471445-52471464 | MS.gene49310:CDS | 50.0% | |
| CTGCGATTTCGTTGCTGAAG+AGG | - | chr1.1:52469977-52469996 | MS.gene49310:intron | 50.0% | |
| CTGTTGAGGTTGCGCATGAT+AGG | - | chr1.1:52469551-52469570 | MS.gene49310:intron | 50.0% | |
| CTTCTTCTGCACTTGCTCCA+TGG | + | chr1.1:52471700-52471719 | None:intergenic | 50.0% | |
| GCGCATGATAGGAAGCTTCT+TGG | - | chr1.1:52469562-52469581 | MS.gene49310:intron | 50.0% | |
| GCTTACAGGTAAGGTGAAGC+AGG | - | chr1.1:52470080-52470099 | MS.gene49310:intron | 50.0% | |
| GGCTAATGTTAAGACGGCGA+TGG | - | chr1.1:52469330-52469349 | MS.gene49310:intron | 50.0% | |
| GGGAGATACGATGAAGCTGT+TGG | - | chr1.1:52469724-52469743 | MS.gene49310:intron | 50.0% | |
| GGTAGCCAAGGATATCATGG+AGG | - | chr1.1:52470245-52470264 | MS.gene49310:intron | 50.0% | |
| GTGTGGGATTCAGATTCCAG+TGG | - | chr1.1:52470479-52470498 | MS.gene49310:CDS | 50.0% | |
| TACACCGGTGGAAGTTTCTG+AGG | - | chr1.1:52469906-52469925 | MS.gene49310:intron | 50.0% | |
| TGCGGTAGCCAAGGATATCA+TGG | - | chr1.1:52470242-52470261 | MS.gene49310:intron | 50.0% | |
| TGGGATGGAGGATCATGAGA+AGG | - | chr1.1:52469597-52469616 | MS.gene49310:intron | 50.0% | |
| ! | GCTCAAAGCATTCGGTGAGA+TGG | - | chr1.1:52468991-52469010 | MS.gene49310:CDS | 50.0% |
| ! | GGGGGCAGCATATTTAGAGT+TGG | - | chr1.1:52470191-52470210 | MS.gene49310:intron | 50.0% |
| ! | GGGTGGTTGTTGTTGCTTAC+AGG | - | chr1.1:52470066-52470085 | MS.gene49310:intron | 50.0% |
| !! | AGTGGGTTTTTGGATGAGGG+TGG | + | chr1.1:52468888-52468907 | None:intergenic | 50.0% |
| !! | GGCGTTGGAGCAGAATGTTT+TGG | - | chr1.1:52469618-52469637 | MS.gene49310:intron | 50.0% |
| !! | GGTTTGTTGGGGGTGAAAAG+AGG | + | chr1.1:52468839-52468858 | None:intergenic | 50.0% |
| !! | TGTGTCAGGTTGGGAGTTAC+TGG | + | chr1.1:52471900-52471919 | None:intergenic | 50.0% |
| ACTGTTCGGGATTGACGTGG+CGG | + | chr1.1:52471923-52471942 | None:intergenic | 55.0% | |
| ATGTTAAGACGGCGATGGGG+AGG | - | chr1.1:52469335-52469354 | MS.gene49310:intron | 55.0% | |
| CCTCATTTGCAGAGACACCG+CGG | + | chr1.1:52471769-52471788 | None:intergenic | 55.0% | |
| CTCATTTGCAGAGACACCGC+GGG | + | chr1.1:52471768-52471787 | None:intergenic | 55.0% | |
| CTTGGTTGTTCCCGGTTCAG+AGG | - | chr1.1:52471433-52471452 | MS.gene49310:CDS | 55.0% | |
| GCAGATGTTTGCGGTAGCCA+AGG | - | chr1.1:52470233-52470252 | MS.gene49310:intron | 55.0% | |
| GGGGGTGAAAAGAGGGTTGA+TGG | + | chr1.1:52468831-52468850 | None:intergenic | 55.0% | |
| GTCAGCAGCGCAGATGTTTG+CGG | - | chr1.1:52470224-52470243 | MS.gene49310:intron | 55.0% | |
| TGGGAGTTACTGGATGCTGC+AGG | + | chr1.1:52471890-52471909 | None:intergenic | 55.0% | |
| ! | AACATCTGCGCTGCTGACTG+AGG | + | chr1.1:52470222-52470241 | None:intergenic | 55.0% |
| ! | GGAGGATCATGAGAAGGCGT+TGG | - | chr1.1:52469603-52469622 | MS.gene49310:intron | 55.0% |
| ! | TTGATGGATGCATCGCGGAG+AGG | + | chr1.1:52468815-52468834 | None:intergenic | 55.0% |
| !! | GAGGGTTGATGGATGCATCG+CGG | + | chr1.1:52468820-52468839 | None:intergenic | 55.0% |
| ACGTGGCGGTGTGTCAGGTT+GGG | + | chr1.1:52471909-52471928 | None:intergenic | 60.0% | |
| CCACAAGAGCAGCACTCGGA+GGG | - | chr1.1:52470024-52470043 | MS.gene49310:intron | 60.0% | |
| CCGCGGTGTCTCTGCAAATG+AGG | - | chr1.1:52471766-52471785 | MS.gene49310:CDS | 60.0% | |
| GATTGACGTGGCGGTGTGTC+AGG | + | chr1.1:52471914-52471933 | None:intergenic | 60.0% | |
| GCTCCCACAAGAGCAGCACT+CGG | - | chr1.1:52470020-52470039 | MS.gene49310:intron | 60.0% | |
| TCGCGGAGAGGAGAGAGAGA+AGG | + | chr1.1:52468803-52468822 | None:intergenic | 60.0% | |
| ! | CCTCCGAGTGCTGCTCTTGT+GGG | + | chr1.1:52470026-52470045 | None:intergenic | 60.0% |
| CCCACAAGAGCAGCACTCGG+AGG | - | chr1.1:52470023-52470042 | MS.gene49310:intron | 65.0% | |
| GACGTGGCGGTGTGTCAGGT+TGG | + | chr1.1:52471910-52471929 | None:intergenic | 65.0% | |
| GGCGATGGGGAGGAGAGAAG+AGG | - | chr1.1:52469345-52469364 | MS.gene49310:intron | 65.0% | |
| ! | CCCTCCGAGTGCTGCTCTTG+TGG | + | chr1.1:52470027-52470046 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52468743 | 52471946 | 52468743 | ID=MS.gene49310 |
| chr1.1 | mRNA | 52468743 | 52471946 | 52468743 | ID=MS.gene49310.t1;Parent=MS.gene49310 |
| chr1.1 | exon | 52470346 | 52471946 | 52470346 | ID=MS.gene49310.t1.exon1;Parent=MS.gene49310.t1 |
| chr1.1 | CDS | 52470346 | 52471946 | 52470346 | ID=cds.MS.gene49310.t1;Parent=MS.gene49310.t1 |
| chr1.1 | exon | 52468743 | 52469043 | 52468743 | ID=MS.gene49310.t1.exon2;Parent=MS.gene49310.t1 |
| chr1.1 | CDS | 52468743 | 52469043 | 52468743 | ID=cds.MS.gene49310.t1;Parent=MS.gene49310.t1 |
| Gene Sequence |
| Protein sequence |
