Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50827.t1 | AES68250.1 | 70.7 | 369 | 61 | 3 | 1 | 369 | 1 | 322 | 5.30E-136 | 494.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50827.t1 | Q3AQ69 | 31.3 | 163 | 94 | 6 | 206 | 366 | 26 | 172 | 3.8e-18 | 94.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50827.t1 | G7IYB8 | 70.7 | 369 | 61 | 3 | 1 | 369 | 1 | 322 | 3.8e-136 | 494.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene50827 | 0.801539 | 8.58E-49 | -1.69E-46 |
| MS.gene049297 | MS.gene50827 | 0.811725 | 6.06E-51 | -1.69E-46 |
| MS.gene049346 | MS.gene50827 | 0.803309 | 3.71E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene50827 | 0.819875 | 9.23E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene50827 | 0.834695 | 2.58E-56 | -1.69E-46 |
| MS.gene049915 | MS.gene50827 | 0.841884 | 3.62E-58 | -1.69E-46 |
| MS.gene050226 | MS.gene50827 | 0.817695 | 2.89E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene50827 | 0.807375 | 5.21E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene50827 | 0.804737 | 1.87E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene50827 | 0.8231 | 1.66E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene50827 | 0.809158 | 2.17E-50 | -1.69E-46 |
| MS.gene051663 | MS.gene50827 | 0.825647 | 4.18E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene50827 | 0.828508 | 8.65E-55 | -1.69E-46 |
| MS.gene052077 | MS.gene50827 | 0.819153 | 1.35E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene50827 | 0.850776 | 1.36E-60 | -1.69E-46 |
| MS.gene052188 | MS.gene50827 | 0.802622 | 5.14E-49 | -1.69E-46 |
| MS.gene052255 | MS.gene50827 | 0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene052302 | MS.gene50827 | 0.81898 | 1.48E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene50827 | 0.809888 | 1.51E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene50827 | 0.823347 | 1.45E-53 | -1.69E-46 |
| MS.gene052600 | MS.gene50827 | 0.800625 | 1.32E-48 | -1.69E-46 |
| MS.gene053836 | MS.gene50827 | 0.860528 | 1.94E-63 | -1.69E-46 |
| MS.gene054473 | MS.gene50827 | 0.811161 | 8.04E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene50827 | 0.860574 | 1.88E-63 | -1.69E-46 |
| MS.gene054942 | MS.gene50827 | 0.804374 | 2.23E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene50827 | 0.817151 | 3.83E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene50827 | 0.813459 | 2.53E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene50827 | 0.819117 | 1.37E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene50827 | 0.821562 | 3.78E-53 | -1.69E-46 |
| MS.gene057121 | MS.gene50827 | 0.828844 | 7.17E-55 | -1.69E-46 |
| MS.gene057260 | MS.gene50827 | 0.805001 | 1.65E-49 | -1.69E-46 |
| MS.gene057439 | MS.gene50827 | 0.80758 | 4.72E-50 | -1.69E-46 |
| MS.gene057750 | MS.gene50827 | 0.814318 | 1.64E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene50827 | 0.843052 | 1.78E-58 | -1.69E-46 |
| MS.gene058002 | MS.gene50827 | 0.836018 | 1.20E-56 | -1.69E-46 |
| MS.gene058142 | MS.gene50827 | 0.843849 | 1.09E-58 | -1.69E-46 |
| MS.gene058710 | MS.gene50827 | 0.823635 | 1.25E-53 | -1.69E-46 |
| MS.gene058749 | MS.gene50827 | 0.98031 | 6.35E-150 | -1.69E-46 |
| MS.gene058833 | MS.gene50827 | 0.802181 | 6.34E-49 | -1.69E-46 |
| MS.gene058845 | MS.gene50827 | 0.825575 | 4.35E-54 | -1.69E-46 |
| MS.gene059285 | MS.gene50827 | 0.844418 | 7.65E-59 | -1.69E-46 |
| MS.gene059518 | MS.gene50827 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene50827 | 0.813353 | 2.67E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene50827 | 0.822153 | 2.76E-53 | -1.69E-46 |
| MS.gene060476 | MS.gene50827 | 0.827682 | 1.37E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene50827 | 0.848435 | 6.14E-60 | -1.69E-46 |
| MS.gene061113 | MS.gene50827 | 0.801243 | 9.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50827.t1 | MTR_3g005140 | 85.095 | 369 | 8 | 7 | 1 | 369 | 1 | 322 | 0.0 | 610 |
| MS.gene50827.t1 | MTR_7g011850 | 44.177 | 249 | 124 | 7 | 128 | 368 | 47 | 288 | 2.50e-56 | 186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50827.t1 | AT1G33780 | 65.370 | 257 | 76 | 4 | 112 | 368 | 70 | 313 | 7.27e-112 | 329 |
| MS.gene50827.t1 | AT3G29240 | 41.803 | 244 | 120 | 5 | 141 | 368 | 75 | 312 | 1.26e-53 | 180 |
| MS.gene50827.t1 | AT3G29240 | 41.803 | 244 | 120 | 5 | 141 | 368 | 75 | 312 | 1.26e-53 | 180 |
Find 85 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAACCTCTTGAAACAAAA+TGG | 0.155587 | 3.4:+875247 | MS.gene50827:CDS |
| TCTGATTGTTCTCTGCATTT+TGG | 0.182538 | 3.4:+875483 | MS.gene50827:CDS |
| TTGATTAATCTAACCTTTAC+AGG | 0.207878 | 3.4:+874089 | MS.gene50827:CDS |
| TAGCTCAAGTTTGCTGTATA+AGG | 0.253519 | 3.4:+875749 | MS.gene50827:CDS |
| CATGATTTCAGTTTCTTTGT+TGG | 0.269750 | 3.4:+875657 | MS.gene50827:CDS |
| CACCCACAAGAAGGGCCTTT+TGG | 0.291430 | 3.4:+875384 | MS.gene50827:CDS |
| GGAGAGAAGTTGAAGCTTCC+AGG | 0.302782 | 3.4:+875543 | MS.gene50827:CDS |
| AGTTTCTTTGTTGGTTATGC+TGG | 0.346630 | 3.4:+875666 | MS.gene50827:CDS |
| AATCTAACCTTTACAGGTAA+TGG | 0.370717 | 3.4:+874095 | MS.gene50827:CDS |
| GTAGTCCCTGGTCTATATTA+TGG | 0.381600 | 3.4:+875576 | MS.gene50827:CDS |
| CAGATTCTTCTGAAGGTTTG+TGG | 0.391415 | 3.4:+875778 | MS.gene50827:CDS |
| CCGTGGTGGTCATGTTAATC+TGG | 0.405342 | 3.4:+874187 | MS.gene50827:CDS |
| CAGAATAAAATGAATTGGTT+GGG | 0.406618 | 3.4:-873721 | None:intergenic |
| CCCGCCTTCTTTGTGTGTAT+CGG | 0.407328 | 3.4:-875211 | None:intergenic |
| GTTATTCTCCTTCTAAGATC+TGG | 0.410814 | 3.4:+875354 | MS.gene50827:CDS |
| CCAGTCTCAGGTACAGGAAT+AGG | 0.419654 | 3.4:-875276 | None:intergenic |
| CAAACCTCTTGAAACAAAAT+GGG | 0.422046 | 3.4:+875248 | MS.gene50827:CDS |
| GTCTAGTTCCAGATCTTAGA+AGG | 0.431238 | 3.4:-875362 | None:intergenic |
| TGTTCCAGAATAAAATGAAT+TGG | 0.441229 | 3.4:-873726 | None:intergenic |
| AGATTCTTCTGAAGGTTTGT+GGG | 0.444169 | 3.4:+875779 | MS.gene50827:CDS |
| TTCCAAAAGGCCCTTCTTGT+GGG | 0.447471 | 3.4:-875386 | None:intergenic |
| TTAGCAGTGACAACAAGAAA+TGG | 0.448377 | 3.4:-873830 | None:intergenic |
| AATCACGGCGGAGGTGGAGG+AGG | 0.449102 | 3.4:+873884 | MS.gene50827:CDS |
| CACGGCGGAGGTGGAGGAGG+AGG | 0.453111 | 3.4:+873887 | MS.gene50827:CDS |
| AACAATAATCACGGCGGAGG+TGG | 0.457273 | 3.4:+873878 | MS.gene50827:CDS |
| GGCGGAGGTGGAGGAGGAGG+AGG | 0.457665 | 3.4:+873890 | MS.gene50827:CDS |
| TTGTTTACAGTTAATGATCT+CGG | 0.459996 | 3.4:-873777 | None:intergenic |
| TGCAGCAGGGCTTGTGAAGA+AGG | 0.465727 | 3.4:+875620 | MS.gene50827:CDS |
| GTGGCTACCGACAAGCTTGA+TGG | 0.470507 | 3.4:+875309 | MS.gene50827:CDS |
| CCAGAATAAAATGAATTGGT+TGG | 0.476573 | 3.4:-873722 | None:intergenic |
| CCTATTCCTGTACCTGAGAC+TGG | 0.480085 | 3.4:+875276 | MS.gene50827:CDS |
| AATAATCACGGCGGAGGTGG+AGG | 0.494325 | 3.4:+873881 | MS.gene50827:CDS |
| CTGGTCACCATTACCTGTAA+AGG | 0.496107 | 3.4:-874102 | None:intergenic |
| AGATTAATCAACAACACAAC+AGG | 0.496410 | 3.4:-874077 | None:intergenic |
| AACTGTTTAGATGATGCAGC+AGG | 0.499367 | 3.4:+875606 | MS.gene50827:CDS |
| TGGTTATGCTGGATGGCAAA+TGG | 0.500950 | 3.4:+875677 | MS.gene50827:CDS |
| ACAAGTACACAGCCAGTCTC+AGG | 0.508596 | 3.4:-875288 | None:intergenic |
| ATTCCAAAAGGCCCTTCTTG+TGG | 0.511329 | 3.4:-875387 | None:intergenic |
| TGTTTAATCTTCTTGTGAAG+AGG | 0.512942 | 3.4:-875423 | None:intergenic |
| GGGACTACCTCTTCAAATCC+TGG | 0.516956 | 3.4:-875561 | None:intergenic |
| TAGCAGTGACAACAAGAAAT+GGG | 0.520121 | 3.4:-873829 | None:intergenic |
| GAGAATAACAGTTCTTTCAA+AGG | 0.520498 | 3.4:-875340 | None:intergenic |
| GTGGTCATGTTAATCTGGAT+TGG | 0.533501 | 3.4:+874192 | MS.gene50827:CDS |
| GCTTTGACAGATTCTTCTGA+AGG | 0.533529 | 3.4:+875771 | MS.gene50827:CDS |
| CGAGCTCCATAATATAGACC+AGG | 0.539007 | 3.4:-875582 | None:intergenic |
| TCTTTGTTGGTTATGCTGGA+TGG | 0.540720 | 3.4:+875670 | MS.gene50827:CDS |
| TAAACTATATAGAGATGAGC+TGG | 0.545843 | 3.4:+874229 | MS.gene50827:CDS |
| CTTCTTGTTCTTCTTGCCGC+CGG | 0.547442 | 3.4:-873855 | None:intergenic |
| CCGATACACACAAAGAAGGC+GGG | 0.549826 | 3.4:+875211 | MS.gene50827:CDS |
| GCGAATACCATCAAGCTTGT+CGG | 0.551494 | 3.4:-875316 | None:intergenic |
| GCAGCAGGGCTTGTGAAGAA+GGG | 0.558137 | 3.4:+875621 | MS.gene50827:CDS |
| ACACAGCCAGTCTCAGGTAC+AGG | 0.559250 | 3.4:-875282 | None:intergenic |
| ATGAAATTGAGTCAGAGTAT+TGG | 0.561047 | 3.4:+875712 | MS.gene50827:CDS |
| GGAACTAGACACCCACAAGA+AGG | 0.566894 | 3.4:+875375 | MS.gene50827:CDS |
| TGAGACTGGCTGTGTACTTG+TGG | 0.571797 | 3.4:+875290 | MS.gene50827:CDS |
| GGATTTGAAGAGGTAGTCCC+TGG | 0.577229 | 3.4:+875564 | MS.gene50827:CDS |
| TTCTTCTGAAGGTTTGTGGG+AGG | 0.586761 | 3.4:+875782 | MS.gene50827:CDS |
| CGATTGATGACAATTCCAAA+AGG | 0.587218 | 3.4:-875399 | None:intergenic |
| CAGCAGGGCTTGTGAAGAAG+GGG | 0.599227 | 3.4:+875622 | MS.gene50827:CDS |
| AAGAACAATAATCACGGCGG+AGG | 0.604640 | 3.4:+873875 | MS.gene50827:CDS |
| ATGCAGAGAACAATCAGAGA+AGG | 0.607603 | 3.4:-875478 | None:intergenic |
| TGACAACAAGAAATGGGATG+CGG | 0.608709 | 3.4:-873823 | None:intergenic |
| GAAGCTTCCAGGATTTGAAG+AGG | 0.610660 | 3.4:+875554 | MS.gene50827:CDS |
| GAACTAGACACCCACAAGAA+GGG | 0.612099 | 3.4:+875376 | MS.gene50827:CDS |
| CAGAGAACAATCAGAGAAGG+TGG | 0.616018 | 3.4:-875475 | None:intergenic |
| GATGCCGATACACACAAAGA+AGG | 0.619105 | 3.4:+875207 | MS.gene50827:CDS |
| TTTGCAACTTATGGGTACGC+AGG | 0.620393 | 3.4:+875809 | MS.gene50827:CDS |
| CTTGTTGTCACTGCTAACGC+CGG | 0.621404 | 3.4:+873836 | MS.gene50827:CDS |
| AACAAGAAGAACAATAATCA+CGG | 0.628711 | 3.4:+873869 | MS.gene50827:CDS |
| CGATACACACAAAGAAGGCG+GGG | 0.630007 | 3.4:+875212 | MS.gene50827:CDS |
| GCCGATACACACAAAGAAGG+CGG | 0.635205 | 3.4:+875210 | MS.gene50827:CDS |
| ACAAAGAAACTGAAATCATG+AGG | 0.637763 | 3.4:-875654 | None:intergenic |
| CAACAAGAAATGGGATGCGG+CGG | 0.642061 | 3.4:-873820 | None:intergenic |
| TGAGTCAGAGTATTGGTATG+TGG | 0.643034 | 3.4:+875719 | MS.gene50827:CDS |
| GGTGACCAGTCTATTCCAGA+AGG | 0.645000 | 3.4:+874116 | MS.gene50827:CDS |
| ACTGTTTAGATGATGCAGCA+GGG | 0.653857 | 3.4:+875607 | MS.gene50827:CDS |
| GTTGTCACTGCTAACGCCGG+CGG | 0.656759 | 3.4:+873839 | MS.gene50827:CDS |
| TTAATCAACAACACAACAGG+CGG | 0.672508 | 3.4:-874074 | None:intergenic |
| GAGCTCCATAATATAGACCA+GGG | 0.684906 | 3.4:-875581 | None:intergenic |
| TTTACAGTTAATGATCTCGG+CGG | 0.719903 | 3.4:-873774 | None:intergenic |
| CCAGATTAACATGACCACCA+CGG | 0.729731 | 3.4:-874187 | None:intergenic |
| TCTCAGAATGAGAACCGTGG+TGG | 0.747290 | 3.4:+874173 | MS.gene50827:CDS |
| AACTCTCAGAATGAGAACCG+TGG | 0.749394 | 3.4:+874170 | MS.gene50827:CDS |
| AAGAAGAACAATAATCACGG+CGG | 0.784381 | 3.4:+873872 | MS.gene50827:CDS |
| AAAGTGAATATGGATCTGTG+TGG | 0.831813 | 3.4:+873671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAGGATTTATACAATAAA+TGG | + | chr3.4:874927-874946 | MS.gene50827:intron | 15.0% |
| !! | TTATACATGATACATAATTA+TGG | + | chr3.4:874535-874554 | MS.gene50827:intron | 15.0% |
| !!! | ATATTTGAAATTATGGAAAA+CGG | + | chr3.4:874970-874989 | MS.gene50827:intron | 15.0% |
| !!! | GATTTGTATCATTTTATTTA+TGG | + | chr3.4:874833-874852 | MS.gene50827:intron | 15.0% |
| !!! | TGAAAACATATTTGAAATTA+TGG | + | chr3.4:874963-874982 | MS.gene50827:intron | 15.0% |
| !!! | TTTTAAAAGCATAGTAAAAT+TGG | - | chr3.4:874005-874024 | None:intergenic | 15.0% |
| !! | TATCGTCTAATGATTAATAT+TGG | + | chr3.4:874782-874801 | MS.gene50827:intron | 20.0% |
| !!! | GTTACTAAATCATGATTTTT+AGG | - | chr3.4:875456-875475 | None:intergenic | 20.0% |
| ! | AAAAAGTTATAGGAAGTCAA+TGG | + | chr3.4:874498-874517 | MS.gene50827:intron | 25.0% |
| ! | AACAAGAAGAACAATAATCA+CGG | + | chr3.4:873869-873888 | MS.gene50827:CDS | 25.0% |
| ! | AATCATACTTGATAGATAGT+TGG | + | chr3.4:874666-874685 | MS.gene50827:intron | 25.0% |
| ! | ACCAAGTTATAGAAAAATGA+AGG | + | chr3.4:874807-874826 | MS.gene50827:intron | 25.0% |
| ! | ATAGATACATAGAATGCAAA+AGG | - | chr3.4:875043-875062 | None:intergenic | 25.0% |
| ! | ATTATCATTAGTGCTTCTAT+GGG | - | chr3.4:874431-874450 | None:intergenic | 25.0% |
| ! | CAGAATAAAATGAATTGGTT+GGG | - | chr3.4:873724-873743 | None:intergenic | 25.0% |
| ! | CCAAGTTATAGAAAAATGAA+GGG | + | chr3.4:874808-874827 | MS.gene50827:intron | 25.0% |
| ! | CTTAATAACAAGTACAAACA+AGG | - | chr3.4:874912-874931 | None:intergenic | 25.0% |
| ! | GAGAGACTAAAAAAAGTTAT+AGG | + | chr3.4:874488-874507 | MS.gene50827:intron | 25.0% |
| ! | TGTTCCAGAATAAAATGAAT+TGG | - | chr3.4:873729-873748 | None:intergenic | 25.0% |
| ! | TTAATGACAAGTTCATCAAA+AGG | - | chr3.4:874702-874721 | None:intergenic | 25.0% |
| ! | TTGATTAATCTAACCTTTAC+AGG | + | chr3.4:874089-874108 | MS.gene50827:CDS | 25.0% |
| ! | TTGTTTACAGTTAATGATCT+CGG | - | chr3.4:873780-873799 | None:intergenic | 25.0% |
| !!! | CTTGTTTGTACTTGTTATTA+AGG | + | chr3.4:874910-874929 | MS.gene50827:intron | 25.0% |
| AATCTAACCTTTACAGGTAA+TGG | + | chr3.4:874095-874114 | MS.gene50827:CDS | 30.0% | |
| ACAAAGAAACTGAAATCATG+AGG | - | chr3.4:875657-875676 | None:intergenic | 30.0% | |
| AGATTAATCAACAACACAAC+AGG | - | chr3.4:874080-874099 | None:intergenic | 30.0% | |
| ATGAAATTGAGTCAGAGTAT+TGG | + | chr3.4:875712-875731 | MS.gene50827:CDS | 30.0% | |
| ATTGATGTAGAAGCTACTAT+TGG | + | chr3.4:875082-875101 | MS.gene50827:intron | 30.0% | |
| CAAACCTCTTGAAACAAAAT+GGG | + | chr3.4:875248-875267 | MS.gene50827:CDS | 30.0% | |
| CATGATTTCAGTTTCTTTGT+TGG | + | chr3.4:875657-875676 | MS.gene50827:CDS | 30.0% | |
| CATTATCATTAGTGCTTCTA+TGG | - | chr3.4:874432-874451 | None:intergenic | 30.0% | |
| CCAGAAGGCAAAAATAATAA+TGG | + | chr3.4:874131-874150 | MS.gene50827:CDS | 30.0% | |
| CCAGAATAAAATGAATTGGT+TGG | - | chr3.4:873725-873744 | None:intergenic | 30.0% | |
| GAATGAAGTTATTCCAATTC+AGG | - | chr3.4:874342-874361 | None:intergenic | 30.0% | |
| GAGAATAACAGTTCTTTCAA+AGG | - | chr3.4:875343-875362 | None:intergenic | 30.0% | |
| TAAACTATATAGAGATGAGC+TGG | + | chr3.4:874229-874248 | MS.gene50827:CDS | 30.0% | |
| TCATTCCATTGTAGAAAAGA+TGG | + | chr3.4:874356-874375 | MS.gene50827:intron | 30.0% | |
| TGTTTAATCTTCTTGTGAAG+AGG | - | chr3.4:875426-875445 | None:intergenic | 30.0% | |
| ! | CCAACCAATTCATTTTATTC+TGG | + | chr3.4:873722-873741 | MS.gene50827:CDS | 30.0% |
| !! | AGCATGTTTTTGCTAAAATC+AGG | + | chr3.4:875522-875541 | MS.gene50827:CDS | 30.0% |
| !! | CATAGAAGCACTAATGATAA+TGG | + | chr3.4:874430-874449 | MS.gene50827:intron | 30.0% |
| !! | CATTTTATTTATGGCTCGTT+TGG | + | chr3.4:874842-874861 | MS.gene50827:intron | 30.0% |
| !! | CCCTTCATTTTTCTATAACT+TGG | - | chr3.4:874811-874830 | None:intergenic | 30.0% |
| !!! | CCATTATTATTTTTGCCTTC+TGG | - | chr3.4:874134-874153 | None:intergenic | 30.0% |
| AAGAAGAACAATAATCACGG+CGG | + | chr3.4:873872-873891 | MS.gene50827:CDS | 35.0% | |
| CAATTAACCTTTATCCCACT+AGG | - | chr3.4:874589-874608 | None:intergenic | 35.0% | |
| CCAAACCTCTTGAAACAAAA+TGG | + | chr3.4:875247-875266 | MS.gene50827:CDS | 35.0% | |
| CCATATCTAAGAAGCAATAC+AGG | + | chr3.4:875115-875134 | MS.gene50827:intron | 35.0% | |
| CCTGTATTGCTTCTTAGATA+TGG | - | chr3.4:875118-875137 | None:intergenic | 35.0% | |
| GGGATAAAGGTTAATTGTCA+AGG | + | chr3.4:874592-874611 | MS.gene50827:intron | 35.0% | |
| TAGAATGCAAAAGGCGAAAA+AGG | - | chr3.4:875034-875053 | None:intergenic | 35.0% | |
| TAGACGATAAACACCTCAAT+GGG | - | chr3.4:874771-874790 | None:intergenic | 35.0% | |
| TAGCAGTGACAACAAGAAAT+GGG | - | chr3.4:873832-873851 | None:intergenic | 35.0% | |
| TCAGAAGTCCAATAGTTAAG+AGG | + | chr3.4:874461-874480 | MS.gene50827:intron | 35.0% | |
| TCTCTCTACCTCTTAACTAT+TGG | - | chr3.4:874472-874491 | None:intergenic | 35.0% | |
| TTAATCAACAACACAACAGG+CGG | - | chr3.4:874077-874096 | None:intergenic | 35.0% | |
| TTAGACGATAAACACCTCAA+TGG | - | chr3.4:874772-874791 | None:intergenic | 35.0% | |
| TTAGCAGTGACAACAAGAAA+TGG | - | chr3.4:873833-873852 | None:intergenic | 35.0% | |
| TTTACAGTTAATGATCTCGG+CGG | - | chr3.4:873777-873796 | None:intergenic | 35.0% | |
| ! | AGATTCTTCTGAAGGTTTGT+GGG | + | chr3.4:875779-875798 | MS.gene50827:CDS | 35.0% |
| ! | AGTCTTGTCATAACCCATAT+AGG | + | chr3.4:874382-874401 | MS.gene50827:intron | 35.0% |
| ! | AGTTTCTTTGTTGGTTATGC+TGG | + | chr3.4:875666-875685 | MS.gene50827:CDS | 35.0% |
| ! | ATTAATCTAAGATGCCTCCT+TGG | + | chr3.4:874717-874736 | MS.gene50827:intron | 35.0% |
| ! | CGATTGATGACAATTCCAAA+AGG | - | chr3.4:875402-875421 | None:intergenic | 35.0% |
| ! | CTCTACCATCTTTTCTACAA+TGG | - | chr3.4:874364-874383 | None:intergenic | 35.0% |
| ! | GAGGAGATTTTGCAACTTAT+GGG | + | chr3.4:875801-875820 | MS.gene50827:CDS | 35.0% |
| ! | TCTGATTGTTCTCTGCATTT+TGG | + | chr3.4:875483-875502 | MS.gene50827:CDS | 35.0% |
| !! | AAAATTGGTTTGCAGGTTGA+TGG | - | chr3.4:873990-874009 | None:intergenic | 35.0% |
| !! | CCATTTTGTTTCAAGAGGTT+TGG | - | chr3.4:875250-875269 | None:intergenic | 35.0% |
| !! | GAAGCACTAATGATAATGGT+TGG | + | chr3.4:874434-874453 | MS.gene50827:intron | 35.0% |
| !! | GCATAGTAAAATTGGTTTGC+AGG | - | chr3.4:873997-874016 | None:intergenic | 35.0% |
| !! | GTTATTCTCCTTCTAAGATC+TGG | + | chr3.4:875354-875373 | MS.gene50827:CDS | 35.0% |
| !! | TAGCTCAAGTTTGCTGTATA+AGG | + | chr3.4:875749-875768 | MS.gene50827:CDS | 35.0% |
| AAAAACATGCTTGCCTCAAG+AGG | - | chr3.4:875513-875532 | None:intergenic | 40.0% | |
| AACTGTTTAGATGATGCAGC+AGG | + | chr3.4:875606-875625 | MS.gene50827:CDS | 40.0% | |
| ACATGTCCAAACCACCTATA+TGG | - | chr3.4:874399-874418 | None:intergenic | 40.0% | |
| ACTGTTTAGATGATGCAGCA+GGG | + | chr3.4:875607-875626 | MS.gene50827:CDS | 40.0% | |
| ATGCAGAGAACAATCAGAGA+AGG | - | chr3.4:875481-875500 | None:intergenic | 40.0% | |
| CATAACCCATATAGGTGGTT+TGG | + | chr3.4:874390-874409 | MS.gene50827:intron | 40.0% | |
| CATGTCCAAACCACCTATAT+GGG | - | chr3.4:874398-874417 | None:intergenic | 40.0% | |
| CTTGTCATAACCCATATAGG+TGG | + | chr3.4:874385-874404 | MS.gene50827:intron | 40.0% | |
| GAGCTCCATAATATAGACCA+GGG | - | chr3.4:875584-875603 | None:intergenic | 40.0% | |
| GCTTTGACAGATTCTTCTGA+AGG | + | chr3.4:875771-875790 | MS.gene50827:CDS | 40.0% | |
| GTAGTCCCTGGTCTATATTA+TGG | + | chr3.4:875576-875595 | MS.gene50827:CDS | 40.0% | |
| GTGGTCATGTTAATCTGGAT+TGG | + | chr3.4:874192-874211 | MS.gene50827:CDS | 40.0% | |
| TGACAACAAGAAATGGGATG+CGG | - | chr3.4:873826-873845 | None:intergenic | 40.0% | |
| TGTACCTCTGTCTGTTTAAG+TGG | + | chr3.4:874303-874322 | MS.gene50827:intron | 40.0% | |
| TTAACCTTTATCCCACTAGG+TGG | - | chr3.4:874586-874605 | None:intergenic | 40.0% | |
| TTCGAGTCAACTTCCTGAAT+TGG | + | chr3.4:874326-874345 | MS.gene50827:intron | 40.0% | |
| ! | ATAGGTGGTTTGGACATGTT+TGG | + | chr3.4:874400-874419 | MS.gene50827:intron | 40.0% |
| ! | CAGATTCTTCTGAAGGTTTG+TGG | + | chr3.4:875778-875797 | MS.gene50827:CDS | 40.0% |
| ! | GATTGTTCTCTGCATTTTGG+TGG | + | chr3.4:875486-875505 | MS.gene50827:CDS | 40.0% |
| ! | GGAGGAGATTTTGCAACTTA+TGG | + | chr3.4:875800-875819 | MS.gene50827:CDS | 40.0% |
| ! | GTCTAGTTCCAGATCTTAGA+AGG | - | chr3.4:875365-875384 | None:intergenic | 40.0% |
| ! | TCTTTGTTGGTTATGCTGGA+TGG | + | chr3.4:875670-875689 | MS.gene50827:CDS | 40.0% |
| !! | TGAGCCCATTTTGTTTCAAG+AGG | - | chr3.4:875255-875274 | None:intergenic | 40.0% |
| !! | TGAGTCAGAGTATTGGTATG+TGG | + | chr3.4:875719-875738 | MS.gene50827:CDS | 40.0% |
| !!! | TTTTGCCTTCTGGAATAGAC+TGG | - | chr3.4:874124-874143 | None:intergenic | 40.0% |
| AACTCTCAGAATGAGAACCG+TGG | + | chr3.4:874170-874189 | MS.gene50827:CDS | 45.0% | |
| AAGAACAATAATCACGGCGG+AGG | + | chr3.4:873875-873894 | MS.gene50827:CDS | 45.0% | |
| ATTCAGAAGACTCCACCTAG+TGG | + | chr3.4:874571-874590 | MS.gene50827:intron | 45.0% | |
| ATTCCAAAAGGCCCTTCTTG+TGG | - | chr3.4:875390-875409 | None:intergenic | 45.0% | |
| CAGAGAACAATCAGAGAAGG+TGG | - | chr3.4:875478-875497 | None:intergenic | 45.0% | |
| CCAGATTAACATGACCACCA+CGG | - | chr3.4:874190-874209 | None:intergenic | 45.0% | |
| CGAACCACTTAAACAGACAG+AGG | - | chr3.4:874310-874329 | None:intergenic | 45.0% | |
| CGAGCTCCATAATATAGACC+AGG | - | chr3.4:875585-875604 | None:intergenic | 45.0% | |
| CTGGTCACCATTACCTGTAA+AGG | - | chr3.4:874105-874124 | None:intergenic | 45.0% | |
| GAACTAGACACCCACAAGAA+GGG | + | chr3.4:875376-875395 | MS.gene50827:CDS | 45.0% | |
| GAAGCTTCCAGGATTTGAAG+AGG | + | chr3.4:875554-875573 | MS.gene50827:CDS | 45.0% | |
| GATGCCGATACACACAAAGA+AGG | + | chr3.4:875207-875226 | MS.gene50827:CDS | 45.0% | |
| GCGAATACCATCAAGCTTGT+CGG | - | chr3.4:875319-875338 | None:intergenic | 45.0% | |
| GGAGCAACTTACTCGATGTT+AGG | + | chr3.4:875136-875155 | MS.gene50827:intron | 45.0% | |
| TGACTGTATCTGTCCCATTG+AGG | + | chr3.4:874755-874774 | MS.gene50827:intron | 45.0% | |
| TGGTTATGCTGGATGGCAAA+TGG | + | chr3.4:875677-875696 | MS.gene50827:CDS | 45.0% | |
| TTCAGAAGACTCCACCTAGT+GGG | + | chr3.4:874572-874591 | MS.gene50827:intron | 45.0% | |
| TTCCAAAAGGCCCTTCTTGT+GGG | - | chr3.4:875389-875408 | None:intergenic | 45.0% | |
| TTTGCAACTTATGGGTACGC+AGG | + | chr3.4:875809-875828 | MS.gene50827:CDS | 45.0% | |
| ! | TTCTTCTGAAGGTTTGTGGG+AGG | + | chr3.4:875782-875801 | MS.gene50827:CDS | 45.0% |
| AACAATAATCACGGCGGAGG+TGG | + | chr3.4:873878-873897 | MS.gene50827:CDS | 50.0% | |
| ACAAGTACACAGCCAGTCTC+AGG | - | chr3.4:875291-875310 | None:intergenic | 50.0% | |
| CAACAAGAAATGGGATGCGG+CGG | - | chr3.4:873823-873842 | None:intergenic | 50.0% | |
| CATGTTGTCAGCCTCAACCA+AGG | - | chr3.4:874737-874756 | None:intergenic | 50.0% | |
| CCAGTCTCAGGTACAGGAAT+AGG | - | chr3.4:875279-875298 | None:intergenic | 50.0% | |
| CCCGCCTTCTTTGTGTGTAT+CGG | - | chr3.4:875214-875233 | None:intergenic | 50.0% | |
| CCGATACACACAAAGAAGGC+GGG | + | chr3.4:875211-875230 | MS.gene50827:CDS | 50.0% | |
| CCGTGGTGGTCATGTTAATC+TGG | + | chr3.4:874187-874206 | MS.gene50827:CDS | 50.0% | |
| CCTATTCCTGTACCTGAGAC+TGG | + | chr3.4:875276-875295 | MS.gene50827:CDS | 50.0% | |
| CGATACACACAAAGAAGGCG+GGG | + | chr3.4:875212-875231 | MS.gene50827:CDS | 50.0% | |
| CTAAGATGCCTCCTTGGTTG+AGG | + | chr3.4:874723-874742 | MS.gene50827:intron | 50.0% | |
| CTTCTTGTTCTTCTTGCCGC+CGG | - | chr3.4:873858-873877 | None:intergenic | 50.0% | |
| GACTCCACCTAGTGGGATAA+AGG | + | chr3.4:874579-874598 | MS.gene50827:intron | 50.0% | |
| GCCGATACACACAAAGAAGG+CGG | + | chr3.4:875210-875229 | MS.gene50827:CDS | 50.0% | |
| GGAACTAGACACCCACAAGA+AGG | + | chr3.4:875375-875394 | MS.gene50827:CDS | 50.0% | |
| GGAGAGAAGTTGAAGCTTCC+AGG | + | chr3.4:875543-875562 | MS.gene50827:CDS | 50.0% | |
| GGATTTGAAGAGGTAGTCCC+TGG | + | chr3.4:875564-875583 | MS.gene50827:CDS | 50.0% | |
| GGGACTACCTCTTCAAATCC+TGG | - | chr3.4:875564-875583 | None:intergenic | 50.0% | |
| GGTGACCAGTCTATTCCAGA+AGG | + | chr3.4:874116-874135 | MS.gene50827:CDS | 50.0% | |
| TCTCAGAATGAGAACCGTGG+TGG | + | chr3.4:874173-874192 | MS.gene50827:CDS | 50.0% | |
| ! | CTTGTTGTCACTGCTAACGC+CGG | + | chr3.4:873836-873855 | MS.gene50827:CDS | 50.0% |
| ! | TGAGACTGGCTGTGTACTTG+TGG | + | chr3.4:875290-875309 | MS.gene50827:CDS | 50.0% |
| !! | GCATTTTGGTGGACCTCTTG+AGG | + | chr3.4:875497-875516 | MS.gene50827:CDS | 50.0% |
| AATAATCACGGCGGAGGTGG+AGG | + | chr3.4:873881-873900 | MS.gene50827:CDS | 55.0% | |
| ACACAGCCAGTCTCAGGTAC+AGG | - | chr3.4:875285-875304 | None:intergenic | 55.0% | |
| CAGCAGGGCTTGTGAAGAAG+GGG | + | chr3.4:875622-875641 | MS.gene50827:CDS | 55.0% | |
| GCAGCAGGGCTTGTGAAGAA+GGG | + | chr3.4:875621-875640 | MS.gene50827:CDS | 55.0% | |
| GTGGCTACCGACAAGCTTGA+TGG | + | chr3.4:875309-875328 | MS.gene50827:CDS | 55.0% | |
| GTTGTCAGCCTCAACCAAGG+AGG | - | chr3.4:874734-874753 | None:intergenic | 55.0% | |
| TGCAGCAGGGCTTGTGAAGA+AGG | + | chr3.4:875620-875639 | MS.gene50827:CDS | 55.0% | |
| ! | CACCCACAAGAAGGGCCTTT+TGG | + | chr3.4:875384-875403 | MS.gene50827:CDS | 55.0% |
| GTTGTCACTGCTAACGCCGG+CGG | + | chr3.4:873839-873858 | MS.gene50827:CDS | 60.0% | |
| AATCACGGCGGAGGTGGAGG+AGG | + | chr3.4:873884-873903 | MS.gene50827:CDS | 65.0% | |
| CACGGCGGAGGTGGAGGAGG+AGG | + | chr3.4:873887-873906 | MS.gene50827:CDS | 75.0% | |
| GGCGGAGGTGGAGGAGGAGG+AGG | + | chr3.4:873890-873909 | MS.gene50827:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 873680 | 875836 | 873680 | ID=MS.gene50827 |
| chr3.4 | mRNA | 873680 | 875836 | 873680 | ID=MS.gene50827.t1;Parent=MS.gene50827 |
| chr3.4 | exon | 873680 | 873970 | 873680 | ID=MS.gene50827.t1.exon1;Parent=MS.gene50827.t1 |
| chr3.4 | CDS | 873680 | 873970 | 873680 | ID=cds.MS.gene50827.t1;Parent=MS.gene50827.t1 |
| chr3.4 | exon | 874074 | 874250 | 874074 | ID=MS.gene50827.t1.exon2;Parent=MS.gene50827.t1 |
| chr3.4 | CDS | 874074 | 874250 | 874074 | ID=cds.MS.gene50827.t1;Parent=MS.gene50827.t1 |
| chr3.4 | exon | 875195 | 875836 | 875195 | ID=MS.gene50827.t1.exon3;Parent=MS.gene50827.t1 |
| chr3.4 | CDS | 875195 | 875836 | 875195 | ID=cds.MS.gene50827.t1;Parent=MS.gene50827.t1 |
| Gene Sequence |
| Protein sequence |
