AlfalfaGEDB | MS.gene50827

M. sativa cultivar XinJiangDaYe / MS.gene50827

KEGG: -
GO: -
PFAM: PF02622.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50827.t1	AES68250.1	70.7	369	61	3	1	369	1	322	5.30E-136	494.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50827.t1	Q3AQ69	31.3	163	94	6	206	366	26	172	3.8e-18	94.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50827.t1	G7IYB8	70.7	369	61	3	1	369	1	322	3.8e-136	494.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049151	MS.gene50827	0.801539	8.58E-49	-1.69E-46
MS.gene049297	MS.gene50827	0.811725	6.06E-51	-1.69E-46
MS.gene049346	MS.gene50827	0.803309	3.71E-49	-1.69E-46
MS.gene049378	MS.gene50827	0.819875	9.23E-53	-1.69E-46
MS.gene049758	MS.gene50827	0.834695	2.58E-56	-1.69E-46
MS.gene049915	MS.gene50827	0.841884	3.62E-58	-1.69E-46
MS.gene050226	MS.gene50827	0.817695	2.89E-52	-1.69E-46
MS.gene050227	MS.gene50827	0.807375	5.21E-50	-1.69E-46
MS.gene050228	MS.gene50827	0.804737	1.87E-49	-1.69E-46
MS.gene050642	MS.gene50827	0.8231	1.66E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50827.t1	MTR_3g005140	85.095	369	8	7	1	369	1	322	0.0	610
MS.gene50827.t1	MTR_7g011850	44.177	249	124	7	128	368	47	288	2.50e-56	186

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50827.t1	AT1G33780	65.370	257	76	4	112	368	70	313	7.27e-112	329
MS.gene50827.t1	AT3G29240	41.803	244	120	5	141	368	75	312	1.26e-53	180
MS.gene50827.t1	AT3G29240	41.803	244	120	5	141	368	75	312	1.26e-53	180

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Find 85 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGAATATGGATCTGTG+TGG	0.831813	3.4:+873671	None:intergenic
AACAAGAAGAACAATAATCA+CGG	0.628711	3.4:+873869	MS.gene50827:CDS
AACAATAATCACGGCGGAGG+TGG	0.457273	3.4:+873878	MS.gene50827:CDS
AACTCTCAGAATGAGAACCG+TGG	0.749394	3.4:+874170	MS.gene50827:CDS
AACTGTTTAGATGATGCAGC+AGG	0.499367	3.4:+875606	MS.gene50827:CDS
AAGAACAATAATCACGGCGG+AGG	0.604640	3.4:+873875	MS.gene50827:CDS
AAGAAGAACAATAATCACGG+CGG	0.784381	3.4:+873872	MS.gene50827:CDS
AATAATCACGGCGGAGGTGG+AGG	0.494325	3.4:+873881	MS.gene50827:CDS
AATCACGGCGGAGGTGGAGG+AGG	0.449102	3.4:+873884	MS.gene50827:CDS
AATCTAACCTTTACAGGTAA+TGG	0.370717	3.4:+874095	MS.gene50827:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTAACCTTTACAGGTAA+TGG	+	chr3.4:874095-874114	MS.gene50827:CDS	30.0%
ACAAAGAAACTGAAATCATG+AGG	-	chr3.4:875657-875676	None:intergenic	30.0%
AGATTAATCAACAACACAAC+AGG	-	chr3.4:874080-874099	None:intergenic	30.0%
ATGAAATTGAGTCAGAGTAT+TGG	+	chr3.4:875712-875731	MS.gene50827:CDS	30.0%
ATTGATGTAGAAGCTACTAT+TGG	+	chr3.4:875082-875101	MS.gene50827:intron	30.0%
CAAACCTCTTGAAACAAAAT+GGG	+	chr3.4:875248-875267	MS.gene50827:CDS	30.0%
CATGATTTCAGTTTCTTTGT+TGG	+	chr3.4:875657-875676	MS.gene50827:CDS	30.0%
CATTATCATTAGTGCTTCTA+TGG	-	chr3.4:874432-874451	None:intergenic	30.0%
CCAGAAGGCAAAAATAATAA+TGG	+	chr3.4:874131-874150	MS.gene50827:CDS	30.0%
CCAGAATAAAATGAATTGGT+TGG	-	chr3.4:873725-873744	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	873680	875836	873680	ID=MS.gene50827
chr3.4	mRNA	873680	875836	873680	ID=MS.gene50827.t1;Parent=MS.gene50827
chr3.4	exon	873680	873970	873680	ID=MS.gene50827.t1.exon1;Parent=MS.gene50827.t1
chr3.4	CDS	873680	873970	873680	ID=cds.MS.gene50827.t1;Parent=MS.gene50827.t1
chr3.4	exon	874074	874250	874074	ID=MS.gene50827.t1.exon2;Parent=MS.gene50827.t1
chr3.4	CDS	874074	874250	874074	ID=cds.MS.gene50827.t1;Parent=MS.gene50827.t1
chr3.4	exon	875195	875836	875195	ID=MS.gene50827.t1.exon3;Parent=MS.gene50827.t1
chr3.4	CDS	875195	875836	875195	ID=cds.MS.gene50827.t1;Parent=MS.gene50827.t1

Gene Sequence

>MS.gene50827

ATGGATCTGTGTGGCGTTAATGTGAAGAACAATCTTTTGTACCCAACCAATTCATTTTATTCTGGAACAACAAGATCATCATCTTTTTACAACGCCGCCGAGATCATTAACTGTAAACAACAACAACAACACTTTCAACGCCGCCGCATCCCATTTCTTGTTGTCACTGCTAACGCCGGCGGCAAGAAGAACAAGAAGAACAATAATCACGGCGGAGGTGGAGGAGGAGGAGGTATGTATACTCTTCATTTCTTGTTGTCACTCACTGCATTTGCATTATTATTTATACTTGTAAGTAATTCTCTATCCATCAACCTGCAAACCAATTTTACTATGCTTTTAAAACATTCAGTCAATGTCATCATGCTTCTAATTTACTGTTTTACAAGTATAGCCGCCTGTTGTGTTGTTGATTAATCTAACCTTTACAGGTAATGGTGACCAGTCTATTCCAGAAGGCAAAAATAATAATGGTGATAAATCAAATAACAACTCTCAGAATGAGAACCGTGGTGGTCATGTTAATCTGGATTGGCGTGAATTCAGAGCTAAACTATATAGAGATGAGCTGGTAGTAATCAATTCATTGCTAAATAAATACAATCTGTCTGTAATTTACATGATGTACCTCTGTCTGTTTAAGTGGTTCGAGTCAACTTCCTGAATTGGAATAACTTCATTCCATTGTAGAAAAGATGGTAGAGTCTTGTCATAACCCATATAGGTGGTTTGGACATGTTTGGAAAAACCCATAGAAGCACTAATGATAATGGTTGGTTGATCAGAAGTCCAATAGTTAAGAGGTAGAGAGAGACTAAAAAAAGTTATAGGAAGTCAATGGTCTATTTGTGAACTTTATACATGATACATAATTATGGCATTGTTTGATTCATTCAGAAGACTCCACCTAGTGGGATAAAGGTTAATTGTCAAGGTTTTAAAACATCTGTTATATCTCTTTATGTGATTTGTTTCAGCAGTAGTATAATCATACTTGATAGATAGTTGGAGATTCATCTCCTTTTGATGAACTTGTCATTAATCTAAGATGCCTCCTTGGTTGAGGCTGACAACATGACTGTATCTGTCCCATTGAGGTGTTTATCGTCTAATGATTAATATTGGTGACCAAGTTATAGAAAAATGAAGGGTTGATTTGTATCATTTTATTTATGGCTCGTTTGGTTTAAGAAAATGTGTTTTATTTTCACTAATATTTACAAATACTACCTTGTTTGTACTTGTTATTAAGGATTTATACAATAAATGGTGAAAATAGAAAATGAAAACATATTTGAAATTATGGAAAACGGAAACTGACTTTTTTTCATAATTATTAATGAAAAAAAATCCTTTTTCGCCTTTTGCATTCTATGTATCTATACTTGATGTACTTTTAATTATTGATGTAGAAGCTACTATTGGTTATGATTGACCATATCTAAGAAGCAATACAGGAGCAACTTACTCGATGTTAGGTTTCATTAACTGAGTTTTTCTTGACTTAATTAACAGAAAGAAATAGCAGATGCCGATACACACAAAGAAGGCGGGGCATTACACATTTCCAAACCTCTTGAAACAAAATGGGCTCATCCTATTCCTGTACCTGAGACTGGCTGTGTACTTGTGGCTACCGACAAGCTTGATGGTATTCGCACCTTTGAAAGAACTGTTATTCTCCTTCTAAGATCTGGAACTAGACACCCACAAGAAGGGCCTTTTGGAATTGTCATCAATCGTCCTCTTCACAAGAAGATTAAACAGATGAATCCTAAAAATCATGATTTAGTAACCACCTTCTCTGATTGTTCTCTGCATTTTGGTGGACCTCTTGAGGCAAGCATGTTTTTGCTAAAATCAGGAGAGAAGTTGAAGCTTCCAGGATTTGAAGAGGTAGTCCCTGGTCTATATTATGGAGCTCGAAACTGTTTAGATGATGCAGCAGGGCTTGTGAAGAAGGGGATTATCAAGCCTCATGATTTCAGTTTCTTTGTTGGTTATGCTGGATGGCAAATGGATCAGTTGCGAGATGAAATTGAGTCAGAGTATTGGTATGTGGCTGCATGTAGCTCAAGTTTGCTGTATAAGGCTTTGACAGATTCTTCTGAAGGTTTGTGGGAGGAGATTTTGCAACTTATGGGTACGCAGGATTGA

Protein sequence

>MS.gene50827.t1

MDLCGVNVKNNLLYPTNSFYSGTTRSSSFYNAAEIINCKQQQQHFQRRRIPFLVVTANAGGKKNKKNNNHGGGGGGGGMYTLHFLLSLTAFALLFILPPVVLLINLTFTGNGDQSIPEGKNNNGDKSNNNSQNENRGGHVNLDWREFRAKLYRDELKEIADADTHKEGGALHISKPLETKWAHPIPVPETGCVLVATDKLDGIRTFERTVILLLRSGTRHPQEGPFGIVINRPLHKKIKQMNPKNHDLVTTFSDCSLHFGGPLEASMFLLKSGEKLKLPGFEEVVPGLYYGARNCLDDAAGLVKKGIIKPHDFSFFVGYAGWQMDQLRDEIESEYWYVAACSSSLLYKALTDSSEGLWEEILQLMGTQD