AlfalfaGEDB | MS.gene52853

M. sativa cultivar XinJiangDaYe / MS.gene52853

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52853.t1	AES71222.2	93.8	112	7	0	17	128	54	165	3.50E-55	224.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52853.t1	Q9Z2L6	33.7	95	57	2	22	116	78	166	4.7e-08	58.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52853.t1	A0A072UZE6	93.8	112	7	0	17	128	54	165	2.5e-55	224.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene52853	0.807299	5.41E-50	-1.69E-46
MS.gene049159	MS.gene52853	0.836679	8.12E-57	-1.69E-46
MS.gene049435	MS.gene52853	0.806353	8.57E-50	-1.69E-46
MS.gene049501	MS.gene52853	0.820927	5.30E-53	-1.69E-46
MS.gene049850	MS.gene52853	0.80197	7.00E-49	-1.69E-46
MS.gene050226	MS.gene52853	0.808576	2.89E-50	-1.69E-46
MS.gene050227	MS.gene52853	0.804508	2.09E-49	-1.69E-46
MS.gene050228	MS.gene52853	0.805766	1.14E-49	-1.69E-46
MS.gene050442	MS.gene52853	0.821873	3.20E-53	-1.69E-46
MS.gene050719	MS.gene52853	0.806215	9.17E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 37 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGCGGAAATTGTCTT+TGG	0.330350	3.3:+1459661	MS.gene52853:CDS
AAAGAAAAGGATAAGGGAGT+TGG	0.492650	3.3:+1459598	MS.gene52853:CDS
AATTATACGAACTTGGAATC+AGG	0.387815	3.3:+1459771	MS.gene52853:CDS
ACCACAAGGTTTAAATGAAT+TGG	0.278023	3.3:-1458854	None:intergenic
AGAGTTCCGTCTTGGTTAAA+TGG	0.267555	3.3:+1459686	MS.gene52853:CDS
ATATCCTATAAAGGCAACTC+AGG	0.566710	3.3:+1459844	MS.gene52853:CDS
CCTTGGCAAGGAAGGCTTAA+AGG	0.244002	3.3:+1459719	MS.gene52853:CDS
CCTTTAAGCCTTCCTTGCCA+AGG	0.550309	3.3:-1459719	None:intergenic
CTCAACTGGATGTTCTTGTA+AGG	0.439096	3.3:+1459633	MS.gene52853:CDS
CTCACCTGAGTTGCCTTTAT+AGG	0.288772	3.3:-1459848	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTATACGAACTTGGAATC+AGG	+	chr3.3:1459771-1459790	MS.gene52853:CDS	30.0%
AATTATCATACTCTTCCGTT+TGG	-	chr3.3:1459528-1459547	None:intergenic	30.0%
ACCACAAGGTTTAAATGAAT+TGG	-	chr3.3:1458857-1458876	None:intergenic	30.0%
CTACATCTATGTCTAACTAT+TGG	-	chr3.3:1459231-1459250	None:intergenic	30.0%
GCACATACATAAAATCTAAG+TGG	-	chr3.3:1459398-1459417	None:intergenic	30.0%
TAAAAACCGTGTCATGTATT+AGG	-	chr3.3:1459297-1459316	None:intergenic	30.0%
TCCAATTCATTTAAACCTTG+TGG	+	chr3.3:1458853-1458872	MS.gene52853:CDS	30.0%
TCCAGACATATATCCTATAA+AGG	+	chr3.3:1459835-1459854	MS.gene52853:CDS	30.0%
TCTTGAGTTACTTACTTGTT+TGG	+	chr3.3:1459057-1459076	MS.gene52853:intron	30.0%
TTATAGGATATATGTCTGGA+TGG	-	chr3.3:1459835-1459854	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	1458783	1459865	1458783	ID=MS.gene52853
chr3.3	mRNA	1458783	1459865	1458783	ID=MS.gene52853.t1;Parent=MS.gene52853
chr3.3	exon	1458783	1458874	1458783	ID=MS.gene52853.t1.exon1;Parent=MS.gene52853.t1
chr3.3	CDS	1458783	1458874	1458783	ID=cds.MS.gene52853.t1;Parent=MS.gene52853.t1
chr3.3	exon	1459572	1459865	1459572	ID=MS.gene52853.t1.exon2;Parent=MS.gene52853.t1
chr3.3	CDS	1459572	1459865	1459572	ID=cds.MS.gene52853.t1;Parent=MS.gene52853.t1

Gene Sequence

>MS.gene52853

GTACGGGAGTTGTGGAAAGACATTACAGACCAAGAACTTCGTTCCTTCTAAAAATTCCTCAAGGATGTACTCCAATTCATTTAAACCTTGTGGTAATTTTCTCAACAATTGAAGGATAGTTATTTATTTAGTTAATTAAGTCTATGAAATTATGTTGGTTATATATATATAATAGGTTTTATCATATATTTTTTGAATTGATACCAGCTAAGTTTGCATTGCTAATTGCAAATGGAAATTAAATGTTTGCCAAACACTTTGAAATGATTATATGTCTTGAGTTACTTACTTGTTTGGTTTGCTTCAGTGAGCCTAAACTGTAAGCAGAAAATGAAAAGTATTTAAGAGATTGAATCACACAGCATAGTGTTGATGCAGCCTCGCTGACTTGTGTTAATAGAGGATGGTCGGGTTTGGTAAGGAGGGATGACGAGATAGAGAGAGTCCAATAGTTAGACATAGATGTAGAGCAAGATTAAGAAGGATGCCAGTTTTATGGTTTATCTGTGGACCTAATACATGACACGGTTTTTATGGCATTGATTGATCAATGCAGGTGATCCCACTTTGTGAAAATAGTCTGTGTTGTTGTTGTTGTGTTGTATCATCTACCCACTTAGATTTTATGTATGTGCTTGGATGAGAATTTTATGCAGTTGAAATGAAGGGTTAATCTTTTCTAAATTGTCCAACTTGTTATTAATGATAGTTTAAACTATGGGCGCCACTAACCGCTTCTTGGCCAAACGGAAGAGTATGATAATTGATAGTGCTATGTTACATTCCCAGGCAAGGCATGGAACTCGTTCTCCGACAAAGAAAAGGATAAGGGAGTTGGATAATTTGTCAGCTCAACTGGATGTTCTTGTAAGGGATGTAAAAGAGCGGAAATTGTCTTTGGAGAGAGTTCCGTCTTGGTTAAATGGATGGAAATCTCCTTGGCAAGGAAGGCTTAAAGGCGGTGAGCTAATTAAACTAGGAGAGGAAGAATTATACGAACTTGGAATCAGGATTAGAGAAAGGTTTCCGAGTTTGTTTGACGAGGATTACCATCCAGACATATATCCTATAAAGGCAACTCAG

Protein sequence

>MS.gene52853.t1

VRELWKDITDQELRSFUKFLKDVLQFIUTLWQGMELVLRQRKGUGSWIICQLNWMFLUGMUKSGNCLWREFRLGUMDGNLLGKEGLKAVSULNUERKNYTNLESGLEKGFRVCLTRITIQTYILURQL