Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52994.t1 | XP_003590794.1 | 79.6 | 250 | 29 | 1 | 1 | 228 | 1 | 250 | 4.00E-99 | 371.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52994.t1 | Q682V0 | 57.3 | 192 | 60 | 1 | 4 | 173 | 22 | 213 | 3.3e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52994.t1 | G7I3Z1 | 79.6 | 250 | 29 | 1 | 1 | 228 | 1 | 250 | 2.9e-99 | 371.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene52994 | 0.808891 | 2.48E-50 | -1.69E-46 |
| MS.gene04919 | MS.gene52994 | 0.816576 | 5.15E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene52994 | 0.834239 | 3.36E-56 | -1.69E-46 |
| MS.gene049283 | MS.gene52994 | 0.826682 | 2.37E-54 | -1.69E-46 |
| MS.gene049499 | MS.gene52994 | 0.803938 | 2.75E-49 | -1.69E-46 |
| MS.gene049680 | MS.gene52994 | 0.82739 | 1.61E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene52994 | 0.802135 | 6.48E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene52994 | 0.81677 | 4.66E-52 | -1.69E-46 |
| MS.gene051019 | MS.gene52994 | 0.805285 | 1.44E-49 | -1.69E-46 |
| MS.gene051637 | MS.gene52994 | 0.837536 | 4.91E-57 | -1.69E-46 |
| MS.gene051699 | MS.gene52994 | 0.808795 | 2.60E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene52994 | 0.82265 | 2.11E-53 | -1.69E-46 |
| MS.gene052793 | MS.gene52994 | 0.828541 | 8.49E-55 | -1.69E-46 |
| MS.gene053228 | MS.gene52994 | 0.838475 | 2.81E-57 | -1.69E-46 |
| MS.gene053602 | MS.gene52994 | 0.829732 | 4.37E-55 | -1.69E-46 |
| MS.gene053963 | MS.gene52994 | 0.810763 | 9.81E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene52994 | 0.813963 | 1.96E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene52994 | 0.813402 | 2.61E-51 | -1.69E-46 |
| MS.gene054957 | MS.gene52994 | 0.809707 | 1.66E-50 | -1.69E-46 |
| MS.gene055150 | MS.gene52994 | 0.868324 | 7.11E-66 | -1.69E-46 |
| MS.gene055801 | MS.gene52994 | 0.811719 | 6.08E-51 | -1.69E-46 |
| MS.gene055886 | MS.gene52994 | 0.816896 | 4.37E-52 | -1.69E-46 |
| MS.gene05624 | MS.gene52994 | 0.818457 | 1.94E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene52994 | 0.841999 | 3.38E-58 | -1.69E-46 |
| MS.gene057622 | MS.gene52994 | 0.810855 | 9.36E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene52994 | 0.841798 | 3.82E-58 | -1.69E-46 |
| MS.gene05878 | MS.gene52994 | 0.821851 | 3.24E-53 | -1.69E-46 |
| MS.gene059436 | MS.gene52994 | 0.813483 | 2.50E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene52994 | 0.861524 | 9.66E-64 | -1.69E-46 |
| MS.gene05985 | MS.gene52994 | -0.840102 | 1.06E-57 | -1.69E-46 |
| MS.gene06023 | MS.gene52994 | 0.810809 | 9.58E-51 | -1.69E-46 |
| MS.gene060244 | MS.gene52994 | 0.828765 | 7.49E-55 | -1.69E-46 |
| MS.gene060338 | MS.gene52994 | 0.803706 | 3.07E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene52994 | 0.805898 | 1.07E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene52994 | 0.802974 | 4.35E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene52994 | 0.82327 | 1.52E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene52994 | 0.835452 | 1.66E-56 | -1.69E-46 |
| MS.gene060975 | MS.gene52994 | 0.800609 | 1.33E-48 | -1.69E-46 |
| MS.gene060977 | MS.gene52994 | 0.817627 | 2.99E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene52994 | 0.807007 | 6.24E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52994.t1 | MTR_1g075330 | 86.400 | 250 | 12 | 1 | 1 | 228 | 1 | 250 | 2.27e-151 | 424 |
| MS.gene52994.t1 | MTR_1g075380 | 88.889 | 63 | 7 | 0 | 224 | 286 | 9 | 71 | 2.06e-30 | 109 |
| MS.gene52994.t1 | MTR_1g075340 | 85.714 | 63 | 9 | 0 | 224 | 286 | 8 | 70 | 5.51e-30 | 108 |
| MS.gene52994.t1 | MTR_1g075340 | 85.714 | 63 | 9 | 0 | 224 | 286 | 8 | 70 | 5.51e-30 | 108 |
| MS.gene52994.t1 | MTR_1g075410 | 84.127 | 63 | 10 | 0 | 224 | 286 | 10 | 72 | 8.02e-30 | 108 |
| MS.gene52994.t1 | MTR_5g090250 | 82.540 | 63 | 11 | 0 | 224 | 286 | 8 | 70 | 1.57e-27 | 102 |
| MS.gene52994.t1 | MTR_5g090250 | 82.540 | 63 | 11 | 0 | 224 | 286 | 8 | 70 | 1.57e-27 | 102 |
| MS.gene52994.t1 | MTR_1g070335 | 57.143 | 63 | 27 | 0 | 224 | 286 | 8 | 70 | 2.32e-16 | 72.4 |
| MS.gene52994.t1 | MTR_5g045470 | 52.381 | 63 | 30 | 0 | 224 | 286 | 7 | 69 | 9.66e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52994.t1 | AT3G23100 | 53.814 | 236 | 82 | 3 | 4 | 216 | 22 | 253 | 2.06e-78 | 239 |
| MS.gene52994.t1 | AT3G23100 | 53.814 | 236 | 82 | 3 | 4 | 216 | 22 | 253 | 2.06e-78 | 239 |
| MS.gene52994.t1 | AT1G61410 | 53.153 | 111 | 47 | 2 | 107 | 216 | 1 | 107 | 3.73e-28 | 105 |
| MS.gene52994.t1 | AT5G43580 | 48.052 | 77 | 38 | 1 | 210 | 286 | 25 | 99 | 8.61e-16 | 72.0 |
| MS.gene52994.t1 | AT2G38870 | 52.381 | 63 | 30 | 0 | 224 | 286 | 8 | 70 | 2.84e-15 | 69.7 |
| MS.gene52994.t1 | AT2G38900 | 45.588 | 68 | 35 | 1 | 219 | 286 | 23 | 88 | 3.09e-12 | 62.0 |
| MS.gene52994.t1 | AT3G46860 | 39.024 | 82 | 43 | 1 | 205 | 286 | 11 | 85 | 1.98e-11 | 59.7 |
| MS.gene52994.t1 | AT2G38900 | 46.032 | 63 | 34 | 0 | 224 | 286 | 11 | 73 | 2.11e-11 | 59.3 |
Find 63 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTGTCTGAGCGGTATT+TGG | 0.234417 | 1.1:+56402960 | MS.gene52994:CDS |
| CAACGACAGGGTTTGGGTTT+GGG | 0.289389 | 1.1:+56408232 | MS.gene52994:CDS |
| GAATTGTCTGAGCGGTATTT+GGG | 0.316473 | 1.1:+56402961 | MS.gene52994:CDS |
| GCAACGACAGGGTTTGGGTT+TGG | 0.327218 | 1.1:+56408231 | MS.gene52994:CDS |
| GAAAACTACTGCAGAAATAT+TGG | 0.339315 | 1.1:+56403864 | MS.gene52994:CDS |
| GACACTTTCTATCCAATTGT+TGG | 0.347121 | 1.1:-56408284 | None:intergenic |
| ACTTACGCAACGACAGGGTT+TGG | 0.351229 | 1.1:+56408225 | MS.gene52994:CDS |
| CTTACGCAACGACAGGGTTT+GGG | 0.360903 | 1.1:+56408226 | MS.gene52994:CDS |
| GTCACTCAGGTTCCAACAAT+TGG | 0.363160 | 1.1:+56408272 | MS.gene52994:CDS |
| TTCAAATTCCACCCTTTCAT+TGG | 0.363589 | 1.1:-56406396 | None:intergenic |
| CACGAATATTGATTCTTCTT+CGG | 0.369660 | 1.1:-56402722 | None:intergenic |
| TATTTGGGGTTTCGACAACC+TGG | 0.386028 | 1.1:+56402976 | MS.gene52994:CDS |
| GTTTATGCATTTGCTGATGC+TGG | 0.406007 | 1.1:+56403003 | MS.gene52994:CDS |
| TGGGTTTGGGTTAATAAAGA+TGG | 0.418377 | 1.1:+56408245 | MS.gene52994:CDS |
| CCTTCCACTCCAACCAACTC+TGG | 0.454716 | 1.1:-56408119 | None:intergenic |
| TGCTGCTCAGTGGGACCAGC+CGG | 0.460985 | 1.1:+56402924 | MS.gene52994:CDS |
| TTCTCATGGATGCAAACATA+AGG | 0.465523 | 1.1:+56403890 | MS.gene52994:CDS |
| AATGCCATCATTGTGCTAGA+AGG | 0.471882 | 1.1:+56408185 | MS.gene52994:CDS |
| ACTAGTTCTTCGAAGGATGT+TGG | 0.485278 | 1.1:+56406921 | MS.gene52994:CDS |
| ATGCTGGTGATGCTCATAAG+AGG | 0.491015 | 1.1:+56403019 | MS.gene52994:CDS |
| AGAAATATTGGACTTTCTCA+TGG | 0.496713 | 1.1:+56403876 | MS.gene52994:CDS |
| GAAGCAGCGTGCTGCTCAGT+GGG | 0.503408 | 1.1:+56402915 | MS.gene52994:CDS |
| CCAGAGTTGGTTGGAGTGGA+AGG | 0.515293 | 1.1:+56408119 | MS.gene52994:CDS |
| TGTTCTCAGCTAAGAGCTCA+TGG | 0.516002 | 1.1:+56408096 | MS.gene52994:intron |
| GAATGACACTGCATTGGAGA+TGG | 0.516889 | 1.1:+56403815 | MS.gene52994:CDS |
| CCGACGACTTACGCAACGAC+AGG | 0.517888 | 1.1:+56408219 | MS.gene52994:CDS |
| GTGAGAGAATAGCCAATGAA+AGG | 0.523831 | 1.1:+56406384 | MS.gene52994:CDS |
| GTTGGTTGGAGTGGAAGGAA+AGG | 0.527079 | 1.1:+56408124 | MS.gene52994:CDS |
| AGATCCTTCTAGCACAATGA+TGG | 0.537596 | 1.1:-56408189 | None:intergenic |
| AGGGAGGAATGACACTGCAT+TGG | 0.540751 | 1.1:+56403809 | MS.gene52994:CDS |
| TGAGAGAATAGCCAATGAAA+GGG | 0.557370 | 1.1:+56406385 | MS.gene52994:CDS |
| AGAAGAATCAATATTCGTGA+AGG | 0.557463 | 1.1:+56402726 | MS.gene52994:CDS |
| CCACGTACTCTTCCACCGGC+TGG | 0.560726 | 1.1:-56402939 | None:intergenic |
| GTTGTCGTGGACGTTTGAGA+AGG | 0.561969 | 1.1:+56403789 | MS.gene52994:intron |
| GTGTATTACTAGTTCTTCGA+AGG | 0.563762 | 1.1:+56406914 | MS.gene52994:CDS |
| ATGGCCAGAGTTGGTTGGAG+TGG | 0.564909 | 1.1:+56408115 | MS.gene52994:CDS |
| ATTAGAAGCTGAGAAGTGCT+TGG | 0.565059 | 1.1:+56406355 | MS.gene52994:CDS |
| AATTCAGAGGGAGAATCCAT+TGG | 0.572843 | 1.1:+56408160 | MS.gene52994:CDS |
| TAAGAGCTCATGGCCAGAGT+TGG | 0.573671 | 1.1:+56408106 | MS.gene52994:CDS |
| CAGCTGTCAAAACAAGATAA+CGG | 0.575664 | 1.1:+56406798 | MS.gene52994:CDS |
| AGCTCATGGCCAGAGTTGGT+TGG | 0.578782 | 1.1:+56408110 | MS.gene52994:CDS |
| ATTTGGGGTTTCGACAACCT+GGG | 0.580929 | 1.1:+56402977 | MS.gene52994:CDS |
| TTGTCGTGGACGTTTGAGAA+GGG | 0.583754 | 1.1:+56403790 | MS.gene52994:CDS |
| TAAAGATGGAATTGTCACTC+AGG | 0.589757 | 1.1:+56408259 | MS.gene52994:CDS |
| TGTGAATGTTGCAGTTGTCG+TGG | 0.589936 | 1.1:+56403776 | MS.gene52994:intron |
| TGCTCAGTGGGACCAGCCGG+TGG | 0.593157 | 1.1:+56402927 | MS.gene52994:CDS |
| GAAGAATCAATATTCGTGAA+GGG | 0.593164 | 1.1:+56402727 | MS.gene52994:CDS |
| AGCAGAAGCTACAATTCAGA+GGG | 0.593359 | 1.1:+56408148 | MS.gene52994:CDS |
| TAGCAGAAGCTACAATTCAG+AGG | 0.596029 | 1.1:+56408147 | MS.gene52994:CDS |
| CGGCAACAAATCTCTTCAAG+AGG | 0.596675 | 1.1:+56406818 | MS.gene52994:CDS |
| AATTCCACGTACTCTTCCAC+CGG | 0.602320 | 1.1:-56402943 | None:intergenic |
| TGAATCTCAAATCTATACAA+AGG | 0.608331 | 1.1:+56406415 | MS.gene52994:CDS |
| CCTGTCGTTGCGTAAGTCGT+CGG | 0.616539 | 1.1:-56408219 | None:intergenic |
| TGAAGCAGCGTGCTGCTCAG+TGG | 0.619678 | 1.1:+56402914 | MS.gene52994:CDS |
| CCAGCCGGTGGAAGAGTACG+TGG | 0.619854 | 1.1:+56402939 | MS.gene52994:CDS |
| CGACGACTTACGCAACGACA+GGG | 0.619969 | 1.1:+56408220 | MS.gene52994:CDS |
| TCGTGGACGTTTGAGAAGGG+AGG | 0.620819 | 1.1:+56403793 | MS.gene52994:CDS |
| GCAAATGCATAAACAGACCC+AGG | 0.643154 | 1.1:-56402994 | None:intergenic |
| AATTGTCTGAGCGGTATTTG+GGG | 0.650141 | 1.1:+56402962 | MS.gene52994:CDS |
| ACAATGATGGCATTCACCAA+TGG | 0.650325 | 1.1:-56408176 | None:intergenic |
| GAGAATAGCCAATGAAAGGG+TGG | 0.673255 | 1.1:+56406388 | MS.gene52994:CDS |
| TGCTGGTGATGCTCATAAGA+GGG | 0.680650 | 1.1:+56403020 | MS.gene52994:CDS |
| AGTACGTGGAATTGTCTGAG+CGG | 0.752537 | 1.1:+56402953 | MS.gene52994:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATGAATAATAAATTAAA+TGG | + | chr1.1:56408026-56408045 | MS.gene52994:intron | 10.0% |
| !!! | AACATAATTTTTTTTTGTTT+TGG | - | chr1.1:56403316-56403335 | None:intergenic | 10.0% |
| !! | AATTCCAATTTCAAATTTAA+AGG | - | chr1.1:56404515-56404534 | None:intergenic | 15.0% |
| !! | ATGTTCAAAACTAAATAAAA+GGG | - | chr1.1:56405991-56406010 | None:intergenic | 15.0% |
| !! | CAGTAATTGATAAATAAATA+CGG | - | chr1.1:56407390-56407409 | None:intergenic | 15.0% |
| !! | TCTATAATCTATAATATATG+TGG | + | chr1.1:56407273-56407292 | MS.gene52994:intron | 15.0% |
| !! | TCTTCTATTTATGTATAAAA+GGG | - | chr1.1:56406081-56406100 | None:intergenic | 15.0% |
| !!! | AATCCAACAATTTTTTTTTT+CGG | + | chr1.1:56405376-56405395 | MS.gene52994:intron | 15.0% |
| !!! | AATTTTTTTAGGTAACAAAA+TGG | - | chr1.1:56407695-56407714 | None:intergenic | 15.0% |
| !!! | ATCAATTATTTTATGTGAAA+TGG | + | chr1.1:56404117-56404136 | MS.gene52994:intron | 15.0% |
| !!! | ATTACCTTTAAATTTGAAAT+TGG | + | chr1.1:56404508-56404527 | MS.gene52994:intron | 15.0% |
| !!! | ATTTAAAATTACTACCTAAA+TGG | - | chr1.1:56404399-56404418 | None:intergenic | 15.0% |
| !!! | ATTTTTACAAAAGATGATTA+AGG | - | chr1.1:56405426-56405445 | None:intergenic | 15.0% |
| !!! | GCATATATGTTAATTTTTTT+AGG | - | chr1.1:56407706-56407725 | None:intergenic | 15.0% |
| !!! | TAGTAATTTTAAATTACAGT+TGG | + | chr1.1:56404405-56404424 | MS.gene52994:intron | 15.0% |
| !!! | TAGTGTTAATTTTTTGAAAT+AGG | + | chr1.1:56403383-56403402 | MS.gene52994:intron | 15.0% |
| !! | AAAATAGTCATACATATTGA+AGG | + | chr1.1:56407940-56407959 | MS.gene52994:intron | 20.0% |
| !! | AAAATGCATATAATCAAACA+TGG | - | chr1.1:56406023-56406042 | None:intergenic | 20.0% |
| !! | AAACAGAATGATGTAAAAAA+TGG | - | chr1.1:56403695-56403714 | None:intergenic | 20.0% |
| !! | AAACTAGAAAAATAAGAAAC+AGG | - | chr1.1:56405033-56405052 | None:intergenic | 20.0% |
| !! | AAGGTAATTAATAATGTAAG+AGG | - | chr1.1:56404496-56404515 | None:intergenic | 20.0% |
| !! | AATAGGAATGTAATGTTTAA+CGG | + | chr1.1:56404065-56404084 | MS.gene52994:intron | 20.0% |
| !! | AATTGCAAAAAGAAAGAAAA+AGG | + | chr1.1:56407912-56407931 | MS.gene52994:intron | 20.0% |
| !! | AGTTTCAATATCCATAAAAT+AGG | - | chr1.1:56404968-56404987 | None:intergenic | 20.0% |
| !! | ATAAAAGTTAGTTCGTTAAT+TGG | - | chr1.1:56406243-56406262 | None:intergenic | 20.0% |
| !! | ATAATATGAAGTGAAATAGA+AGG | + | chr1.1:56403356-56403375 | MS.gene52994:intron | 20.0% |
| !! | ATACAAGAAAAGATAAGAAT+TGG | - | chr1.1:56407564-56407583 | None:intergenic | 20.0% |
| !! | CTCTTCTATTTATGTATAAA+AGG | - | chr1.1:56406082-56406101 | None:intergenic | 20.0% |
| !! | CTTATCTCAAATTATTATTC+AGG | - | chr1.1:56403103-56403122 | None:intergenic | 20.0% |
| !! | GAAAAAAAAAATTGTTGGAT+TGG | - | chr1.1:56405377-56405396 | None:intergenic | 20.0% |
| !! | GAACACAATATGATTAAATA+AGG | - | chr1.1:56404368-56404387 | None:intergenic | 20.0% |
| !! | GATGTTCAAAACTAAATAAA+AGG | - | chr1.1:56405992-56406011 | None:intergenic | 20.0% |
| !! | GTAATAAAAAAAAACCCATA+AGG | + | chr1.1:56407823-56407842 | MS.gene52994:intron | 20.0% |
| !! | TAACAAAATGGTTATAGAAT+TGG | - | chr1.1:56407683-56407702 | None:intergenic | 20.0% |
| !! | TATTACAAAACTTTCGAATT+TGG | + | chr1.1:56406674-56406693 | MS.gene52994:intron | 20.0% |
| !! | TCTTAAACTTGAGTAAATAT+GGG | + | chr1.1:56404882-56404901 | MS.gene52994:intron | 20.0% |
| !! | TGAAATATACTATACTATCA+AGG | + | chr1.1:56404564-56404583 | MS.gene52994:intron | 20.0% |
| !!! | AAGTTTTGATTTTGATTTGT+GGG | + | chr1.1:56402856-56402875 | MS.gene52994:intron | 20.0% |
| !!! | AGTCGATTTGATAATAATAT+AGG | - | chr1.1:56407339-56407358 | None:intergenic | 20.0% |
| !!! | AGTGTATTTATAGTAGTTTT+TGG | - | chr1.1:56407855-56407874 | None:intergenic | 20.0% |
| !!! | CAATCCAACAATTTTTTTTT+CGG | + | chr1.1:56405375-56405394 | MS.gene52994:intron | 20.0% |
| !!! | GTTGAATTTTTTTTTAGCAT+CGG | + | chr1.1:56402882-56402901 | MS.gene52994:intron | 20.0% |
| !!! | TAATCAATATGCCTATTTTA+TGG | + | chr1.1:56404954-56404973 | MS.gene52994:intron | 20.0% |
| !!! | TATCAAAAAGATACATTTTG+TGG | - | chr1.1:56404818-56404837 | None:intergenic | 20.0% |
| !!! | TATGGGTTTTTTTTTATTAC+AGG | - | chr1.1:56407823-56407842 | None:intergenic | 20.0% |
| ! | AAAAGTAGCTAGAACTAAAT+TGG | + | chr1.1:56404330-56404349 | MS.gene52994:intron | 25.0% |
| ! | AAAGTAGCTAGAACTAAATT+GGG | + | chr1.1:56404331-56404350 | MS.gene52994:intron | 25.0% |
| ! | AATGTTTAACGGTGTAAAAT+TGG | + | chr1.1:56404076-56404095 | MS.gene52994:intron | 25.0% |
| ! | AATTGAATACAACAACAAAC+TGG | - | chr1.1:56404190-56404209 | None:intergenic | 25.0% |
| ! | AGTGAGATGAAATTCAAAAA+AGG | - | chr1.1:56404851-56404870 | None:intergenic | 25.0% |
| ! | ATAATACACAAGTCAAATCA+TGG | + | chr1.1:56407774-56407793 | MS.gene52994:intron | 25.0% |
| ! | ATCTCCGAAAAAAAAATTGT+TGG | - | chr1.1:56405797-56405816 | None:intergenic | 25.0% |
| ! | CACACATATTAAATCCAAAA+AGG | + | chr1.1:56407621-56407640 | MS.gene52994:intron | 25.0% |
| ! | CGAAAAAAAAATTGTTGGAT+TGG | - | chr1.1:56405792-56405811 | None:intergenic | 25.0% |
| ! | CTTAAACTTGAGTAAATATG+GGG | + | chr1.1:56404883-56404902 | MS.gene52994:intron | 25.0% |
| ! | GAAAAACAAATACATTGGTA+AGG | - | chr1.1:56403594-56403613 | None:intergenic | 25.0% |
| ! | GAAATGAAACAATGATATAC+AGG | - | chr1.1:56404168-56404187 | None:intergenic | 25.0% |
| ! | GTCTTAAACTTGAGTAAATA+TGG | + | chr1.1:56404881-56404900 | MS.gene52994:intron | 25.0% |
| ! | GTTAATATCAACTACTGTAA+TGG | + | chr1.1:56405072-56405091 | MS.gene52994:intron | 25.0% |
| ! | GTTTATTATGGTTATTGTCT+TGG | + | chr1.1:56404011-56404030 | MS.gene52994:intron | 25.0% |
| ! | TAAAACAACAAGGTAAAATG+AGG | - | chr1.1:56406624-56406643 | None:intergenic | 25.0% |
| ! | TACATATTGAAGGATCAAAA+AGG | + | chr1.1:56407950-56407969 | MS.gene52994:intron | 25.0% |
| ! | TACGAAAAATAACAAACAGT+TGG | - | chr1.1:56403052-56403071 | None:intergenic | 25.0% |
| ! | TCATGAAAATGTCAAATTTC+AGG | - | chr1.1:56404547-56404566 | None:intergenic | 25.0% |
| ! | TCGAAGAAAAACAAATACAT+TGG | - | chr1.1:56403599-56403618 | None:intergenic | 25.0% |
| ! | TCTCCGAAAAAAAAAATTGT+TGG | - | chr1.1:56405382-56405401 | None:intergenic | 25.0% |
| ! | TGAAACTTAAAGTATGTCAA+TGG | + | chr1.1:56404981-56405000 | MS.gene52994:intron | 25.0% |
| ! | TGAAGATAGATTAGTGAAAA+GGG | - | chr1.1:56402837-56402856 | None:intergenic | 25.0% |
| ! | TGAATCTCAAATCTATACAA+AGG | + | chr1.1:56406415-56406434 | MS.gene52994:CDS | 25.0% |
| ! | TGCAAATCTAAAAACAATGT+CGG | + | chr1.1:56407242-56407261 | MS.gene52994:intron | 25.0% |
| ! | TGTACAAAATTCACTTAAGT+TGG | + | chr1.1:56407064-56407083 | MS.gene52994:intron | 25.0% |
| ! | TTCAAAACTAAATAAAAGGG+AGG | - | chr1.1:56405988-56406007 | None:intergenic | 25.0% |
| ! | TTGAAGATAGATTAGTGAAA+AGG | - | chr1.1:56402838-56402857 | None:intergenic | 25.0% |
| !! | AATAAGTTGGCTGTTATTTA+TGG | + | chr1.1:56404686-56404705 | MS.gene52994:intron | 25.0% |
| !! | AATTGGAGGTTGTTATTATA+GGG | - | chr1.1:56406226-56406245 | None:intergenic | 25.0% |
| !! | ATACAGGTCAAAATTTTCAA+TGG | - | chr1.1:56406482-56406501 | None:intergenic | 25.0% |
| !! | GTTTCTCGATTTGTTTATTA+TGG | + | chr1.1:56403999-56404018 | MS.gene52994:intron | 25.0% |
| !! | TAATTGGAGGTTGTTATTAT+AGG | - | chr1.1:56406227-56406246 | None:intergenic | 25.0% |
| !! | TATGTGAAATGGTTTTTGAT+AGG | + | chr1.1:56404128-56404147 | MS.gene52994:intron | 25.0% |
| !!! | AAAAGCATCATAAAACAACA+AGG | - | chr1.1:56406634-56406653 | None:intergenic | 25.0% |
| !!! | AGTTTTGATTTTGATTTGTG+GGG | + | chr1.1:56402857-56402876 | MS.gene52994:intron | 25.0% |
| !!! | ATTGAAAATTTTGACCTGTA+TGG | + | chr1.1:56406481-56406500 | MS.gene52994:intron | 25.0% |
| !!! | CAAGTTTTGATTTTGATTTG+TGG | + | chr1.1:56402855-56402874 | MS.gene52994:intron | 25.0% |
| !!! | GTATAAAAGGGTTATTTCTT+TGG | - | chr1.1:56406069-56406088 | None:intergenic | 25.0% |
| !!! | GTTATTCTGTTTTAGTTTCT+GGG | + | chr1.1:56406732-56406751 | MS.gene52994:intron | 25.0% |
| !!! | TGTTATTCTGTTTTAGTTTC+TGG | + | chr1.1:56406731-56406750 | MS.gene52994:intron | 25.0% |
| !!! | TTAGTTTTGAACATCATAGT+TGG | + | chr1.1:56405997-56406016 | MS.gene52994:intron | 25.0% |
| !!! | TTCTTTGGAATTGAATTCTT+GGG | - | chr1.1:56406054-56406073 | None:intergenic | 25.0% |
| !!! | TTTCTTTGGAATTGAATTCT+TGG | - | chr1.1:56406055-56406074 | None:intergenic | 25.0% |
| AAAAATAACAAACAGTTGGC+AGG | - | chr1.1:56403048-56403067 | None:intergenic | 30.0% | |
| AAAACTAAATAAAAGGGAGG+AGG | - | chr1.1:56405985-56406004 | None:intergenic | 30.0% | |
| AAAAGTGAAACCATAGTTCT+AGG | - | chr1.1:56407151-56407170 | None:intergenic | 30.0% | |
| AAAATGTCTGATGAATGCAA+AGG | + | chr1.1:56407979-56407998 | MS.gene52994:intron | 30.0% | |
| AAACTAAATAAAAGGGAGGA+GGG | - | chr1.1:56405984-56406003 | None:intergenic | 30.0% | |
| AAAGTTAGTTCGTTAATTGG+AGG | - | chr1.1:56406240-56406259 | None:intergenic | 30.0% | |
| AACTTAAAGTATGTCAATGG+AGG | + | chr1.1:56404984-56405003 | MS.gene52994:intron | 30.0% | |
| AAGGCATGTGATATACAAAA+GGG | - | chr1.1:56404631-56404650 | None:intergenic | 30.0% | |
| AATCTAAAAACAATGTCGGT+AGG | + | chr1.1:56407246-56407265 | MS.gene52994:intron | 30.0% | |
| ACAAACACGTCATAAAGATA+AGG | - | chr1.1:56407600-56407619 | None:intergenic | 30.0% | |
| AGAAATATTGGACTTTCTCA+TGG | + | chr1.1:56403876-56403895 | MS.gene52994:CDS | 30.0% | |
| AGAAGAATCAATATTCGTGA+AGG | + | chr1.1:56402726-56402745 | MS.gene52994:CDS | 30.0% | |
| AGGTAAAATGAGGTCAATAT+TGG | - | chr1.1:56406614-56406633 | None:intergenic | 30.0% | |
| AGTAGTGACTCTATTATGAA+GGG | - | chr1.1:56406127-56406146 | None:intergenic | 30.0% | |
| ATAGTAAAGGCTTATCAAAC+CGG | + | chr1.1:56403231-56403250 | MS.gene52994:intron | 30.0% | |
| ATATGGCAATAAGGAACATA+TGG | - | chr1.1:56404919-56404938 | None:intergenic | 30.0% | |
| ATGTGAATGACTGTATGAAT+CGG | - | chr1.1:56405320-56405339 | None:intergenic | 30.0% | |
| ATTGATTAGATACTTTCCGA+TGG | - | chr1.1:56403650-56403669 | None:intergenic | 30.0% | |
| CAACCTCTTAAATAGATATC+TGG | + | chr1.1:56403285-56403304 | MS.gene52994:intron | 30.0% | |
| GAAAACTACTGCAGAAATAT+TGG | + | chr1.1:56403864-56403883 | MS.gene52994:CDS | 30.0% | |
| GAAATGAGACACAAATAAGT+TGG | + | chr1.1:56404673-56404692 | MS.gene52994:intron | 30.0% | |
| GAACTCTGTTATTATCTACA+CGG | - | chr1.1:56407476-56407495 | None:intergenic | 30.0% | |
| GAAGAATCAATATTCGTGAA+GGG | + | chr1.1:56402727-56402746 | MS.gene52994:CDS | 30.0% | |
| GAATCTCATAAGTTGTTGAA+CGG | - | chr1.1:56407801-56407820 | None:intergenic | 30.0% | |
| GATCCAGATATCTATTTAAG+AGG | - | chr1.1:56403291-56403310 | None:intergenic | 30.0% | |
| GGAAGAAGTTGTCATAAAAA+CGG | + | chr1.1:56406313-56406332 | MS.gene52994:intron | 30.0% | |
| GTAATTATATGTGTCAGTGT+CGG | + | chr1.1:56403136-56403155 | MS.gene52994:intron | 30.0% | |
| GTGCAGTAAACATATAGTAA+AGG | + | chr1.1:56403218-56403237 | MS.gene52994:intron | 30.0% | |
| GTGTAAAATTGGAGTTCAAA+GGG | + | chr1.1:56404087-56404106 | MS.gene52994:intron | 30.0% | |
| GTGTTCATATTCTACCATTT+AGG | + | chr1.1:56404382-56404401 | MS.gene52994:intron | 30.0% | |
| GTTATAGAATGTGGTATGAT+TGG | + | chr1.1:56403184-56403203 | MS.gene52994:intron | 30.0% | |
| TAGTAGTGACTCTATTATGA+AGG | - | chr1.1:56406128-56406147 | None:intergenic | 30.0% | |
| TATTACCATGCTTGATTGTA+GGG | - | chr1.1:56407207-56407226 | None:intergenic | 30.0% | |
| TGATATCTCTGTCTCATAAT+TGG | + | chr1.1:56407105-56407124 | MS.gene52994:intron | 30.0% | |
| TTCTCTCAAGATTAGAATTG+AGG | - | chr1.1:56404305-56404324 | None:intergenic | 30.0% | |
| TTGCGTGATATCGTAAAATT+TGG | + | chr1.1:56407746-56407765 | MS.gene52994:intron | 30.0% | |
| TTGTACAAATGTGAAATCCA+TGG | - | chr1.1:56407051-56407070 | None:intergenic | 30.0% | |
| TTTGCAATTCTTCTTGTGTT+TGG | - | chr1.1:56407901-56407920 | None:intergenic | 30.0% | |
| ! | AAAGTGAAACCATAGTTCTA+GGG | - | chr1.1:56407150-56407169 | None:intergenic | 30.0% |
| ! | AGTAGTTGATATTAACGATG+TGG | - | chr1.1:56405068-56405087 | None:intergenic | 30.0% |
| ! | ATGGTTTTTGATAGGTGAAA+TGG | + | chr1.1:56404136-56404155 | MS.gene52994:intron | 30.0% |
| ! | GAACTAGTAATACACTTTTG+AGG | - | chr1.1:56406909-56406928 | None:intergenic | 30.0% |
| ! | GTAGTTGATATTAACGATGT+GGG | - | chr1.1:56405067-56405086 | None:intergenic | 30.0% |
| ! | TATTTTGCATGACTGTTCAA+AGG | - | chr1.1:56407498-56407517 | None:intergenic | 30.0% |
| ! | TTTTCAAATCCTGCTTGATT+TGG | + | chr1.1:56405932-56405951 | MS.gene52994:intron | 30.0% |
| !! | ATTTGTTTTTCTTCGATGTG+AGG | + | chr1.1:56403603-56403622 | MS.gene52994:intron | 30.0% |
| !! | CACGAATATTGATTCTTCTT+CGG | - | chr1.1:56402725-56402744 | None:intergenic | 30.0% |
| !! | GAAGTTGTCTTTTTCATCTT+TGG | - | chr1.1:56404780-56404799 | None:intergenic | 30.0% |
| !! | GGATGATAATGGTAACAAAT+AGG | + | chr1.1:56404048-56404067 | MS.gene52994:intron | 30.0% |
| !! | TTTGTTTTTCTTCGATGTGA+GGG | + | chr1.1:56403604-56403623 | MS.gene52994:intron | 30.0% |
| !!! | ATTGGTAAGGTTTTAAACAG+AGG | - | chr1.1:56403581-56403600 | None:intergenic | 30.0% |
| !!! | CAAAACTCTCAGTTTTTTCT+GGG | - | chr1.1:56406851-56406870 | None:intergenic | 30.0% |
| !!! | TCAAAACTCTCAGTTTTTTC+TGG | - | chr1.1:56406852-56406871 | None:intergenic | 30.0% |
| !!! | TGTTTTGGGAGTTAGAATAA+TGG | - | chr1.1:56406287-56406306 | None:intergenic | 30.0% |
| AAACACGAAACATACAAGTG+AGG | - | chr1.1:56403983-56404002 | None:intergenic | 35.0% | |
| AAACAGGTAAATCTTTGAGC+TGG | + | chr1.1:56405231-56405250 | MS.gene52994:intron | 35.0% | |
| AACAGGTAAATCTTTGAGCT+GGG | + | chr1.1:56405232-56405251 | MS.gene52994:intron | 35.0% | |
| AACATAACCTAATGCTAAGC+TGG | + | chr1.1:56404432-56404451 | MS.gene52994:intron | 35.0% | |
| ACTATCAAGGATCTACTAAG+TGG | + | chr1.1:56404577-56404596 | MS.gene52994:intron | 35.0% | |
| AGAACCATCATATGGCAATA+AGG | - | chr1.1:56404928-56404947 | None:intergenic | 35.0% | |
| ATGAGACAGAGATATCACAA+GGG | - | chr1.1:56407102-56407121 | None:intergenic | 35.0% | |
| ATTACCATGCTTGATTGTAG+GGG | - | chr1.1:56407206-56407225 | None:intergenic | 35.0% | |
| CAAGGCATGTGATATACAAA+AGG | - | chr1.1:56404632-56404651 | None:intergenic | 35.0% | |
| CACCAACACTTCTAATCAAA+AGG | - | chr1.1:56403165-56403184 | None:intergenic | 35.0% | |
| CACCATTGAATATTCAGTCA+CGG | + | chr1.1:56403719-56403738 | MS.gene52994:intron | 35.0% | |
| CAGCTGTCAAAACAAGATAA+CGG | + | chr1.1:56406798-56406817 | MS.gene52994:CDS | 35.0% | |
| CATTAATAGCCAGTAGTGAA+AGG | - | chr1.1:56403752-56403771 | None:intergenic | 35.0% | |
| GATTCATACAGTCATTCACA+TGG | + | chr1.1:56405319-56405338 | MS.gene52994:intron | 35.0% | |
| GGTGTAAAATTGGAGTTCAA+AGG | + | chr1.1:56404086-56404105 | MS.gene52994:intron | 35.0% | |
| GTATTACCATGCTTGATTGT+AGG | - | chr1.1:56407208-56407227 | None:intergenic | 35.0% | |
| GTTATTATCTACACGGAACT+TGG | - | chr1.1:56407469-56407488 | None:intergenic | 35.0% | |
| TAAAATTGGAGTTCAAAGGG+AGG | + | chr1.1:56404090-56404109 | MS.gene52994:intron | 35.0% | |
| TAAACCTGAGAACCATCATA+TGG | - | chr1.1:56404936-56404955 | None:intergenic | 35.0% | |
| TAAAGATGGAATTGTCACTC+AGG | + | chr1.1:56408259-56408278 | MS.gene52994:CDS | 35.0% | |
| TATCAACAGGTCATAACAGT+TGG | + | chr1.1:56404719-56404738 | MS.gene52994:intron | 35.0% | |
| TATCTCTGTCTCATAATTGG+TGG | + | chr1.1:56407108-56407127 | MS.gene52994:intron | 35.0% | |
| TATGAGACAGAGATATCACA+AGG | - | chr1.1:56407103-56407122 | None:intergenic | 35.0% | |
| TATTATGAAGGGTAAACCCT+CGG | - | chr1.1:56406116-56406135 | None:intergenic | 35.0% | |
| TCAAAGATTTACCTGTTTCC+AGG | - | chr1.1:56405229-56405248 | None:intergenic | 35.0% | |
| TGAGAGAATAGCCAATGAAA+GGG | + | chr1.1:56406385-56406404 | MS.gene52994:CDS | 35.0% | |
| TGGAGTCAAATGATATCAAC+AGG | + | chr1.1:56404706-56404725 | MS.gene52994:intron | 35.0% | |
| TGTATGAATATGACCAGACA+AGG | - | chr1.1:56404650-56404669 | None:intergenic | 35.0% | |
| TGTTCCTTATTGCCATATGA+TGG | + | chr1.1:56404921-56404940 | MS.gene52994:intron | 35.0% | |
| TTAAGTAGTGCTTGCGTTAA+TGG | + | chr1.1:56403463-56403482 | MS.gene52994:intron | 35.0% | |
| TTCAAATTCCACCCTTTCAT+TGG | - | chr1.1:56406399-56406418 | None:intergenic | 35.0% | |
| TTCTCATGGATGCAAACATA+AGG | + | chr1.1:56403890-56403909 | MS.gene52994:CDS | 35.0% | |
| TTTATGACAACTTCTTCCTG+TGG | - | chr1.1:56406311-56406330 | None:intergenic | 35.0% | |
| ! | ACATTTTGTGGCTTTCTATG+AGG | - | chr1.1:56404806-56404825 | None:intergenic | 35.0% |
| ! | ATGAATCGGCCAATTTTCTT+TGG | - | chr1.1:56405306-56405325 | None:intergenic | 35.0% |
| ! | CTTGACAATTTGTTCTCACT+AGG | - | chr1.1:56407658-56407677 | None:intergenic | 35.0% |
| ! | GCAGTAGTTTTCTTACAATC+TGG | - | chr1.1:56403856-56403875 | None:intergenic | 35.0% |
| ! | GTGTATTACTAGTTCTTCGA+AGG | + | chr1.1:56406914-56406933 | MS.gene52994:CDS | 35.0% |
| ! | TCAAATATGGTTGATGTGTG+TGG | + | chr1.1:56403504-56403523 | MS.gene52994:intron | 35.0% |
| ! | TGGGTTTGGGTTAATAAAGA+TGG | + | chr1.1:56408245-56408264 | MS.gene52994:CDS | 35.0% |
| ! | TTTTCGTATGAACGAGAACT+GGG | + | chr1.1:56405635-56405654 | MS.gene52994:intron | 35.0% |
| !! | AAGTGAAACCATAGTTCTAG+GGG | - | chr1.1:56407149-56407168 | None:intergenic | 35.0% |
| !! | AGTGTTGGTGTTATAGAATG+TGG | + | chr1.1:56403175-56403194 | MS.gene52994:intron | 35.0% |
| !! | CACCTTTTGATTAGAAGTGT+TGG | + | chr1.1:56403160-56403179 | MS.gene52994:intron | 35.0% |
| !! | CTTTGGGATAGAAATTCCAT+CGG | + | chr1.1:56403631-56403650 | MS.gene52994:intron | 35.0% |
| !! | GTTTCGATTTTCAAAGCGTT+GGG | - | chr1.1:56407447-56407466 | None:intergenic | 35.0% |
| !! | TTTGACCTGTATGGTTTTAC+CGG | + | chr1.1:56406490-56406509 | MS.gene52994:intron | 35.0% |
| !!! | AGTTTTTGGTAGCAACCTTA+TGG | - | chr1.1:56407841-56407860 | None:intergenic | 35.0% |
| !!! | GTTTTTGGTAGCAACCTTAT+GGG | - | chr1.1:56407840-56407859 | None:intergenic | 35.0% |
| AAGAGAAATCTCTCTTCCGA+GGG | + | chr1.1:56406097-56406116 | MS.gene52994:intron | 40.0% | |
| AATGCCATCATTGTGCTAGA+AGG | + | chr1.1:56408185-56408204 | MS.gene52994:CDS | 40.0% | |
| AATTCAGAGGGAGAATCCAT+TGG | + | chr1.1:56408160-56408179 | MS.gene52994:CDS | 40.0% | |
| AATTGTCTGAGCGGTATTTG+GGG | + | chr1.1:56402962-56402981 | MS.gene52994:CDS | 40.0% | |
| ACAATGATGGCATTCACCAA+TGG | - | chr1.1:56408179-56408198 | None:intergenic | 40.0% | |
| ACAGGTAAATCTTTGAGCTG+GGG | + | chr1.1:56405233-56405252 | MS.gene52994:intron | 40.0% | |
| ACTACTTAAACCGTGGGTAT+TGG | - | chr1.1:56403452-56403471 | None:intergenic | 40.0% | |
| AGATCCTTCTAGCACAATGA+TGG | - | chr1.1:56408192-56408211 | None:intergenic | 40.0% | |
| AGCAGAAGCTACAATTCAGA+GGG | + | chr1.1:56408148-56408167 | MS.gene52994:CDS | 40.0% | |
| AGTTGCTTCAGCAATCTATC+AGG | - | chr1.1:56406565-56406584 | None:intergenic | 40.0% | |
| ATTGCCATATGATGGTTCTC+AGG | + | chr1.1:56404929-56404948 | MS.gene52994:intron | 40.0% | |
| CTACTTAAACCGTGGGTATT+GGG | - | chr1.1:56403451-56403470 | None:intergenic | 40.0% | |
| CTCCGTGACTGAATATTCAA+TGG | - | chr1.1:56403724-56403743 | None:intergenic | 40.0% | |
| CTGACTATTCCAAATCAAGC+AGG | - | chr1.1:56405944-56405963 | None:intergenic | 40.0% | |
| GAATTGTCTGAGCGGTATTT+GGG | + | chr1.1:56402961-56402980 | MS.gene52994:CDS | 40.0% | |
| GTCTGATGAATGCAAAGGTA+AGG | + | chr1.1:56407984-56408003 | MS.gene52994:intron | 40.0% | |
| GTGAGAGAATAGCCAATGAA+AGG | + | chr1.1:56406384-56406403 | MS.gene52994:CDS | 40.0% | |
| TAAATGCACCCCTAGAACTA+TGG | + | chr1.1:56407138-56407157 | MS.gene52994:intron | 40.0% | |
| TAGCAGAAGCTACAATTCAG+AGG | + | chr1.1:56408147-56408166 | MS.gene52994:CDS | 40.0% | |
| TGAATATTCAGTCACGGAGA+CGG | + | chr1.1:56403725-56403744 | MS.gene52994:intron | 40.0% | |
| TGAGACAGAGATATCACAAG+GGG | - | chr1.1:56407101-56407120 | None:intergenic | 40.0% | |
| TGCTTGAAAGGTCTTCTGTT+TGG | + | chr1.1:56403256-56403275 | MS.gene52994:intron | 40.0% | |
| TGGATTGAGATGATGTGGAT+GGG | + | chr1.1:56405132-56405151 | MS.gene52994:intron | 40.0% | |
| TGTATATCACATGCCTTGTC+TGG | + | chr1.1:56404634-56404653 | MS.gene52994:intron | 40.0% | |
| TGTCATGCTTGGGATGATAA+TGG | + | chr1.1:56404037-56404056 | MS.gene52994:intron | 40.0% | |
| TTAATGGTTGCGGTTACGTT+GGG | + | chr1.1:56403479-56403498 | MS.gene52994:intron | 40.0% | |
| TTCAGCAATCTATCAGGAGT+AGG | - | chr1.1:56406559-56406578 | None:intergenic | 40.0% | |
| ! | AATCGGCCAATTTTCTTTGG+CGG | - | chr1.1:56405303-56405322 | None:intergenic | 40.0% |
| ! | ACACATGGATTGAGATGATG+TGG | + | chr1.1:56405127-56405146 | MS.gene52994:intron | 40.0% |
| ! | ACTAGTTCTTCGAAGGATGT+TGG | + | chr1.1:56406921-56406940 | MS.gene52994:CDS | 40.0% |
| ! | ACTTCTTCCTGTGGATGTTT+TGG | - | chr1.1:56406302-56406321 | None:intergenic | 40.0% |
| ! | ATGGATTGAGATGATGTGGA+TGG | + | chr1.1:56405131-56405150 | MS.gene52994:intron | 40.0% |
| ! | CAAGTGTTTTGCTTTCACCA+TGG | + | chr1.1:56407031-56407050 | MS.gene52994:intron | 40.0% |
| ! | CAATATTCGTGAAGGGTACA+TGG | + | chr1.1:56402734-56402753 | MS.gene52994:intron | 40.0% |
| ! | CTTCTTCCTGTGGATGTTTT+GGG | - | chr1.1:56406301-56406320 | None:intergenic | 40.0% |
| ! | CTTTTCGTATGAACGAGAAC+TGG | + | chr1.1:56405634-56405653 | MS.gene52994:intron | 40.0% |
| ! | CTTTTGACCAGCTTAGCATT+AGG | - | chr1.1:56404442-56404461 | None:intergenic | 40.0% |
| ! | GGTTTCGATTTTCAAAGCGT+TGG | - | chr1.1:56407448-56407467 | None:intergenic | 40.0% |
| ! | GTTTATGCATTTGCTGATGC+TGG | + | chr1.1:56403003-56403022 | MS.gene52994:CDS | 40.0% |
| ! | TCGATGTGAGGGTTTTCTTT+GGG | + | chr1.1:56403615-56403634 | MS.gene52994:intron | 40.0% |
| ! | TTCGATGTGAGGGTTTTCTT+TGG | + | chr1.1:56403614-56403633 | MS.gene52994:intron | 40.0% |
| !! | AGTATGTCAATGGAGGTGTT+TGG | + | chr1.1:56404991-56405010 | MS.gene52994:intron | 40.0% |
| !! | ATTAGAAGCTGAGAAGTGCT+TGG | + | chr1.1:56406355-56406374 | MS.gene52994:CDS | 40.0% |
| AATTCCACGTACTCTTCCAC+CGG | - | chr1.1:56402946-56402965 | None:intergenic | 45.0% | |
| ACAACCCCTACAATCAAGCA+TGG | + | chr1.1:56407199-56407218 | MS.gene52994:intron | 45.0% | |
| AGAAGACCTTTCAAGCACAC+CGG | - | chr1.1:56403253-56403272 | None:intergenic | 45.0% | |
| AGGTCTACAACTGCAACATC+AGG | - | chr1.1:56403561-56403580 | None:intergenic | 45.0% | |
| AGTACGTGGAATTGTCTGAG+CGG | + | chr1.1:56402953-56402972 | MS.gene52994:CDS | 45.0% | |
| AGTGCTCATAGTGCAACACA+TGG | + | chr1.1:56405112-56405131 | MS.gene52994:intron | 45.0% | |
| AGTGCTTGCGTTAATGGTTG+CGG | + | chr1.1:56403469-56403488 | MS.gene52994:intron | 45.0% | |
| ATCAAACCGGTGTGCTTGAA+AGG | + | chr1.1:56403244-56403263 | MS.gene52994:intron | 45.0% | |
| CGGCAACAAATCTCTTCAAG+AGG | + | chr1.1:56406818-56406837 | MS.gene52994:CDS | 45.0% | |
| CTAACTCCCAAAACATCCAC+AGG | + | chr1.1:56406292-56406311 | MS.gene52994:intron | 45.0% | |
| CTAGTGCCGCCAAAGAAAAT+TGG | + | chr1.1:56405452-56405471 | MS.gene52994:intron | 45.0% | |
| CTATGCCGGTAAAACCATAC+AGG | - | chr1.1:56406498-56406517 | None:intergenic | 45.0% | |
| GAAGAGAAATCTCTCTTCCG+AGG | + | chr1.1:56406096-56406115 | MS.gene52994:intron | 45.0% | |
| GAATGACACTGCATTGGAGA+TGG | + | chr1.1:56403815-56403834 | MS.gene52994:CDS | 45.0% | |
| GAGAATAGCCAATGAAAGGG+TGG | + | chr1.1:56406388-56406407 | MS.gene52994:CDS | 45.0% | |
| GCAAATGCATAAACAGACCC+AGG | - | chr1.1:56402997-56403016 | None:intergenic | 45.0% | |
| GCAAGCACTACTTAAACCGT+GGG | - | chr1.1:56403458-56403477 | None:intergenic | 45.0% | |
| GGAATTGTCTGAGCGGTATT+TGG | + | chr1.1:56402960-56402979 | MS.gene52994:CDS | 45.0% | |
| GGTCCTTGTGACTAACAGAA+CGG | + | chr1.1:56405340-56405359 | MS.gene52994:intron | 45.0% | |
| GTCACTCAGGTTCCAACAAT+TGG | + | chr1.1:56408272-56408291 | MS.gene52994:CDS | 45.0% | |
| GTCCTTGTGACTAACAGAAC+GGG | + | chr1.1:56405341-56405360 | MS.gene52994:intron | 45.0% | |
| GTCTTGGAGATGTCATGCTT+GGG | + | chr1.1:56404027-56404046 | MS.gene52994:intron | 45.0% | |
| GTTAATGGTTGCGGTTACGT+TGG | + | chr1.1:56403478-56403497 | MS.gene52994:intron | 45.0% | |
| GTTACGTTGGGGGTCAAATA+TGG | + | chr1.1:56403491-56403510 | MS.gene52994:intron | 45.0% | |
| TAATGGTTGCGGTTACGTTG+GGG | + | chr1.1:56403480-56403499 | MS.gene52994:intron | 45.0% | |
| TCACTTGAACCCAATACCCA+CGG | + | chr1.1:56403439-56403458 | MS.gene52994:intron | 45.0% | |
| TCCTTGTGACTAACAGAACG+GGG | + | chr1.1:56405342-56405361 | MS.gene52994:intron | 45.0% | |
| TCTATCAGGAGTAGGACCAA+TGG | - | chr1.1:56406551-56406570 | None:intergenic | 45.0% | |
| TGTCTTGGAGATGTCATGCT+TGG | + | chr1.1:56404026-56404045 | MS.gene52994:intron | 45.0% | |
| TGTGAATGTTGCAGTTGTCG+TGG | + | chr1.1:56403776-56403795 | MS.gene52994:intron | 45.0% | |
| TGTTCTCAGCTAAGAGCTCA+TGG | + | chr1.1:56408096-56408115 | MS.gene52994:intron | 45.0% | |
| TTGTCGTGGACGTTTGAGAA+GGG | + | chr1.1:56403790-56403809 | MS.gene52994:CDS | 45.0% | |
| ! | ATGCTGGTGATGCTCATAAG+AGG | + | chr1.1:56403019-56403038 | MS.gene52994:CDS | 45.0% |
| ! | ATTTGGGGTTTCGACAACCT+GGG | + | chr1.1:56402977-56402996 | MS.gene52994:CDS | 45.0% |
| ! | TATTTGGGGTTTCGACAACC+TGG | + | chr1.1:56402976-56402995 | MS.gene52994:CDS | 45.0% |
| ! | TCTACTAAGTGGCTTGTGAG+CGG | + | chr1.1:56404588-56404607 | MS.gene52994:intron | 45.0% |
| ! | TGCTGGTGATGCTCATAAGA+GGG | + | chr1.1:56403020-56403039 | MS.gene52994:CDS | 45.0% |
| !! | ATGGTTTTACCGGCATAGCA+TGG | + | chr1.1:56406500-56406519 | MS.gene52994:intron | 45.0% |
| !!! | AAAAAAAATTATGTTTTAAT+TGG | + | chr1.1:56403321-56403340 | MS.gene52994:intron | 5.0% |
| !!! | AAATTTTTATTATAATTTGA+TGG | + | chr1.1:56408055-56408074 | MS.gene52994:intron | 5.0% |
| !!! | ATAAAGTTTATAATATTTTT+TGG | - | chr1.1:56407364-56407383 | None:intergenic | 5.0% |
| !!! | TAAATATTTATATTTTCAAA+AGG | - | chr1.1:56407302-56407321 | None:intergenic | 5.0% |
| AAATGCAGGCCTGGAAATGC+AGG | + | chr1.1:56405203-56405222 | MS.gene52994:intron | 50.0% | |
| AATCTGCAGAAATGCAGGCC+TGG | + | chr1.1:56405194-56405213 | MS.gene52994:intron | 50.0% | |
| AATGGTTGCGGTTACGTTGG+GGG | + | chr1.1:56403481-56403500 | MS.gene52994:intron | 50.0% | |
| ACTTACGCAACGACAGGGTT+TGG | + | chr1.1:56408225-56408244 | MS.gene52994:CDS | 50.0% | |
| AGGCCTGCATTTCTGCAGAT+TGG | - | chr1.1:56405195-56405214 | None:intergenic | 50.0% | |
| AGGGAGGAATGACACTGCAT+TGG | + | chr1.1:56403809-56403828 | MS.gene52994:CDS | 50.0% | |
| AGGGTGTAACCATGCTATGC+CGG | - | chr1.1:56406512-56406531 | None:intergenic | 50.0% | |
| AGTACCGTTGCAGTTCCAAG+CGG | - | chr1.1:56402800-56402819 | None:intergenic | 50.0% | |
| ATGGCTTTCTCCTGTGACAC+AGG | - | chr1.1:56406532-56406551 | None:intergenic | 50.0% | |
| ATGGTTACACCCTGTGTCAC+AGG | + | chr1.1:56406519-56406538 | MS.gene52994:intron | 50.0% | |
| CAACGTGTCAGTGTCAGTGT+TGG | - | chr1.1:56403079-56403098 | None:intergenic | 50.0% | |
| CAAGTAAGCGTTCTCGTCCA+AGG | + | chr1.1:56406946-56406965 | MS.gene52994:intron | 50.0% | |
| CCAGTGCCGCCAAAGAAAAT+TGG | + | chr1.1:56405294-56405313 | MS.gene52994:intron | 50.0% | |
| CGCAAGCACTACTTAAACCG+TGG | - | chr1.1:56403459-56403478 | None:intergenic | 50.0% | |
| CTGTCTCTGTGACTGCGATT+GGG | - | chr1.1:56403531-56403550 | None:intergenic | 50.0% | |
| CTTACGCAACGACAGGGTTT+GGG | + | chr1.1:56408226-56408245 | MS.gene52994:CDS | 50.0% | |
| GAGATATCACAAGGGGCTTG+TGG | - | chr1.1:56407094-56407113 | None:intergenic | 50.0% | |
| GGCCTGCATTTCTGCAGATT+GGG | - | chr1.1:56405194-56405213 | None:intergenic | 50.0% | |
| GTGTCACAGGAGAAAGCCAT+TGG | + | chr1.1:56406532-56406551 | MS.gene52994:intron | 50.0% | |
| GTTGGTTGGAGTGGAAGGAA+AGG | + | chr1.1:56408124-56408143 | MS.gene52994:CDS | 50.0% | |
| GTTGTCGTGGACGTTTGAGA+AGG | + | chr1.1:56403789-56403808 | MS.gene52994:intron | 50.0% | |
| TAAGAGCTCATGGCCAGAGT+TGG | + | chr1.1:56408106-56408125 | MS.gene52994:CDS | 50.0% | |
| TGGCTTTCTCCTGTGACACA+GGG | - | chr1.1:56406531-56406550 | None:intergenic | 50.0% | |
| TGTCTCTGTGACTGCGATTG+GGG | - | chr1.1:56403530-56403549 | None:intergenic | 50.0% | |
| TTCAACCTCTCCATCACCGA+CGG | + | chr1.1:56402769-56402788 | MS.gene52994:intron | 50.0% | |
| TTCACCGCTTGGAACTGCAA+CGG | + | chr1.1:56402793-56402812 | MS.gene52994:intron | 50.0% | |
| ! | AGGTGTTCGTGCAGCCTTTT+TGG | - | chr1.1:56407638-56407657 | None:intergenic | 50.0% |
| ! | CAACGACAGGGTTTGGGTTT+GGG | + | chr1.1:56408232-56408251 | MS.gene52994:CDS | 50.0% |
| ! | CCAATTTTCTTTGGCGGCAC+TGG | - | chr1.1:56405297-56405316 | None:intergenic | 50.0% |
| ! | CTACTAAGTGGCTTGTGAGC+GGG | + | chr1.1:56404589-56404608 | MS.gene52994:intron | 50.0% |
| ACTTTCCTGAGCCCAGCACT+TGG | - | chr1.1:56405164-56405183 | None:intergenic | 55.0% | |
| ATTTCTGCAGATTGGGCCCG+GGG | - | chr1.1:56405187-56405206 | None:intergenic | 55.0% | |
| CATTTCTGCAGATTGGGCCC+GGG | - | chr1.1:56405188-56405207 | None:intergenic | 55.0% | |
| CCTGTCGTTGCGTAAGTCGT+CGG | - | chr1.1:56408222-56408241 | None:intergenic | 55.0% | |
| CCTTCCACTCCAACCAACTC+TGG | - | chr1.1:56408122-56408141 | None:intergenic | 55.0% | |
| CGACGACTTACGCAACGACA+GGG | + | chr1.1:56408220-56408239 | MS.gene52994:CDS | 55.0% | |
| GCATTTCTGCAGATTGGGCC+CGG | - | chr1.1:56405189-56405208 | None:intergenic | 55.0% | |
| GCCCCGTTCTGTTAGTCACA+AGG | - | chr1.1:56405346-56405365 | None:intergenic | 55.0% | |
| GCTGTCTCTGTGACTGCGAT+TGG | - | chr1.1:56403532-56403551 | None:intergenic | 55.0% | |
| GGAAATGCAGGCCTGGAAAC+AGG | + | chr1.1:56405215-56405234 | MS.gene52994:intron | 55.0% | |
| GGAGACGGTCCTTTCACTAC+TGG | + | chr1.1:56403740-56403759 | MS.gene52994:intron | 55.0% | |
| GGCCCAATCTGCAGAAATGC+AGG | + | chr1.1:56405189-56405208 | MS.gene52994:intron | 55.0% | |
| GTTCCAAGCGGTGAAACCGT+CGG | - | chr1.1:56402788-56402807 | None:intergenic | 55.0% | |
| GTTTCCAGGCCTGCATTTCC+AGG | - | chr1.1:56405215-56405234 | None:intergenic | 55.0% | |
| TCGTGGACGTTTGAGAAGGG+AGG | + | chr1.1:56403793-56403812 | MS.gene52994:CDS | 55.0% | |
| ! | AGCTCATGGCCAGAGTTGGT+TGG | + | chr1.1:56408110-56408129 | MS.gene52994:CDS | 55.0% |
| ! | AGCTGGGGCTGATTTCGTGA+GGG | + | chr1.1:56405248-56405267 | MS.gene52994:intron | 55.0% |
| ! | ATGGCCAGAGTTGGTTGGAG+TGG | + | chr1.1:56408115-56408134 | MS.gene52994:CDS | 55.0% |
| ! | CCAGAGTTGGTTGGAGTGGA+AGG | + | chr1.1:56408119-56408138 | MS.gene52994:CDS | 55.0% |
| ! | GCAACGACAGGGTTTGGGTT+TGG | + | chr1.1:56408231-56408250 | MS.gene52994:CDS | 55.0% |
| ! | TAAGTGGCTTGTGAGCGGGT+AGG | + | chr1.1:56404593-56404612 | MS.gene52994:intron | 55.0% |
| !! | ACGAGAACTGGGCTTTGAGC+TGG | + | chr1.1:56405646-56405665 | MS.gene52994:intron | 55.0% |
| !! | CGAGAACTGGGCTTTGAGCT+GGG | + | chr1.1:56405647-56405666 | MS.gene52994:intron | 55.0% |
| !! | GAGAACTGGGCTTTGAGCTG+GGG | + | chr1.1:56405648-56405667 | MS.gene52994:intron | 55.0% |
| !! | TGAAACCGTCGGTGATGGAG+AGG | - | chr1.1:56402777-56402796 | None:intergenic | 55.0% |
| !! | TTCTTTGGCGGCACTGGCAA+AGG | - | chr1.1:56405291-56405310 | None:intergenic | 55.0% |
| AGCGGTGAAACCGTCGGTGA+TGG | - | chr1.1:56402782-56402801 | None:intergenic | 60.0% | |
| ATGGGCCCATGCCAAGTGCT+GGG | + | chr1.1:56405150-56405169 | MS.gene52994:intron | 60.0% | |
| CCGACGACTTACGCAACGAC+AGG | + | chr1.1:56408219-56408238 | MS.gene52994:CDS | 60.0% | |
| CGTGAGGGCTGAGACAAGTG+TGG | + | chr1.1:56405263-56405282 | MS.gene52994:intron | 60.0% | |
| CTGAGCCCAGCACTTGGCAT+GGG | - | chr1.1:56405158-56405177 | None:intergenic | 60.0% | |
| TCACCGACGGTTTCACCGCT+TGG | + | chr1.1:56402782-56402801 | MS.gene52994:intron | 60.0% | |
| ! | GAAGCAGCGTGCTGCTCAGT+GGG | + | chr1.1:56402915-56402934 | MS.gene52994:CDS | 60.0% |
| ! | GAGCTGGGGCTGATTTCGTG+AGG | + | chr1.1:56405247-56405266 | MS.gene52994:intron | 60.0% |
| ! | TGAAGCAGCGTGCTGCTCAG+TGG | + | chr1.1:56402914-56402933 | MS.gene52994:CDS | 60.0% |
| CAGGCCTGGAAATGCAGGCC+TGG | + | chr1.1:56405208-56405227 | MS.gene52994:intron | 65.0% | |
| CCACGTACTCTTCCACCGGC+TGG | - | chr1.1:56402942-56402961 | None:intergenic | 65.0% | |
| CCTGAGCCCAGCACTTGGCA+TGG | - | chr1.1:56405159-56405178 | None:intergenic | 65.0% | |
| CTGGGCTCAGGAAAGTCCCC+GGG | + | chr1.1:56405168-56405187 | MS.gene52994:intron | 65.0% | |
| GATGGGCCCATGCCAAGTGC+TGG | + | chr1.1:56405149-56405168 | MS.gene52994:intron | 65.0% | |
| GCTGGGCTCAGGAAAGTCCC+CGG | + | chr1.1:56405167-56405186 | MS.gene52994:intron | 65.0% | |
| TGCTGCTCAGTGGGACCAGC+CGG | + | chr1.1:56402924-56402943 | MS.gene52994:CDS | 65.0% | |
| ! | CCAGCCGGTGGAAGAGTACG+TGG | + | chr1.1:56402939-56402958 | MS.gene52994:CDS | 65.0% |
| !! | CCATGCCAAGTGCTGGGCTC+AGG | + | chr1.1:56405156-56405175 | MS.gene52994:intron | 65.0% |
| TGCTCAGTGGGACCAGCCGG+TGG | + | chr1.1:56402927-56402946 | MS.gene52994:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 56402679 | 56408298 | 56402679 | ID=MS.gene52994 |
| chr1.1 | mRNA | 56402679 | 56408298 | 56402679 | ID=MS.gene52994.t1;Parent=MS.gene52994 |
| chr1.1 | exon | 56402679 | 56402748 | 56402679 | ID=MS.gene52994.t1.exon1;Parent=MS.gene52994.t1 |
| chr1.1 | CDS | 56402679 | 56402748 | 56402679 | ID=cds.MS.gene52994.t1;Parent=MS.gene52994.t1 |
| chr1.1 | exon | 56402899 | 56403041 | 56402899 | ID=MS.gene52994.t1.exon2;Parent=MS.gene52994.t1 |
| chr1.1 | CDS | 56402899 | 56403041 | 56402899 | ID=cds.MS.gene52994.t1;Parent=MS.gene52994.t1 |
| chr1.1 | exon | 56403790 | 56403918 | 56403790 | ID=MS.gene52994.t1.exon3;Parent=MS.gene52994.t1 |
| chr1.1 | CDS | 56403790 | 56403918 | 56403790 | ID=cds.MS.gene52994.t1;Parent=MS.gene52994.t1 |
| chr1.1 | exon | 56406314 | 56406436 | 56406314 | ID=MS.gene52994.t1.exon4;Parent=MS.gene52994.t1 |
| chr1.1 | CDS | 56406314 | 56406436 | 56406314 | ID=cds.MS.gene52994.t1;Parent=MS.gene52994.t1 |
| chr1.1 | exon | 56406747 | 56406948 | 56406747 | ID=MS.gene52994.t1.exon5;Parent=MS.gene52994.t1 |
| chr1.1 | CDS | 56406747 | 56406948 | 56406747 | ID=cds.MS.gene52994.t1;Parent=MS.gene52994.t1 |
| chr1.1 | exon | 56408105 | 56408298 | 56408105 | ID=MS.gene52994.t1.exon6;Parent=MS.gene52994.t1 |
| chr1.1 | CDS | 56408105 | 56408298 | 56408105 | ID=cds.MS.gene52994.t1;Parent=MS.gene52994.t1 |
| Gene Sequence |
| Protein sequence |
