Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53786.t1 | XP_003602264.1 | 89.8 | 128 | 13 | 0 | 89 | 216 | 203 | 330 | 3.30E-53 | 218.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53786.t1 | Q38931 | 75.0 | 76 | 18 | 1 | 14 | 89 | 275 | 349 | 5.6e-25 | 115.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53786.t1 | G7J7F4 | 89.8 | 128 | 13 | 0 | 89 | 216 | 203 | 330 | 2.4e-53 | 218.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene53786 | 0.83585 | 1.32E-56 | -1.69E-46 |
MS.gene050026 | MS.gene53786 | 0.822158 | 2.75E-53 | -1.69E-46 |
MS.gene050442 | MS.gene53786 | 0.80118 | 1.02E-48 | -1.69E-46 |
MS.gene051198 | MS.gene53786 | 0.804669 | 1.93E-49 | -1.69E-46 |
MS.gene05125 | MS.gene53786 | 0.800129 | 1.67E-48 | -1.69E-46 |
MS.gene051332 | MS.gene53786 | 0.803091 | 4.11E-49 | -1.69E-46 |
MS.gene051744 | MS.gene53786 | 0.81731 | 3.52E-52 | -1.69E-46 |
MS.gene051800 | MS.gene53786 | 0.802296 | 6.00E-49 | -1.69E-46 |
MS.gene052208 | MS.gene53786 | 0.819948 | 8.88E-53 | -1.69E-46 |
MS.gene052867 | MS.gene53786 | 0.800588 | 1.34E-48 | -1.69E-46 |
MS.gene05308 | MS.gene53786 | 0.824985 | 6.00E-54 | -1.69E-46 |
MS.gene053202 | MS.gene53786 | 0.80301 | 4.28E-49 | -1.69E-46 |
MS.gene053621 | MS.gene53786 | 0.813524 | 2.45E-51 | -1.69E-46 |
MS.gene05414 | MS.gene53786 | 0.833992 | 3.88E-56 | -1.69E-46 |
MS.gene05415 | MS.gene53786 | 0.830922 | 2.23E-55 | -1.69E-46 |
MS.gene05423 | MS.gene53786 | 0.809751 | 1.62E-50 | -1.69E-46 |
MS.gene054291 | MS.gene53786 | -0.802679 | 5.00E-49 | -1.69E-46 |
MS.gene05435 | MS.gene53786 | 0.806751 | 7.06E-50 | -1.69E-46 |
MS.gene054479 | MS.gene53786 | 0.805444 | 1.33E-49 | -1.69E-46 |
MS.gene054576 | MS.gene53786 | 0.802342 | 5.87E-49 | -1.69E-46 |
MS.gene054651 | MS.gene53786 | 0.829198 | 5.89E-55 | -1.69E-46 |
MS.gene054775 | MS.gene53786 | 0.823496 | 1.34E-53 | -1.69E-46 |
MS.gene055586 | MS.gene53786 | 0.822105 | 2.83E-53 | -1.69E-46 |
MS.gene055701 | MS.gene53786 | 0.805612 | 1.23E-49 | -1.69E-46 |
MS.gene055818 | MS.gene53786 | 0.81194 | 5.44E-51 | -1.69E-46 |
MS.gene055875 | MS.gene53786 | 0.81085 | 9.39E-51 | -1.69E-46 |
MS.gene056050 | MS.gene53786 | 0.805284 | 1.44E-49 | -1.69E-46 |
MS.gene056162 | MS.gene53786 | 0.802042 | 6.77E-49 | -1.69E-46 |
MS.gene056173 | MS.gene53786 | 0.806379 | 8.47E-50 | -1.69E-46 |
MS.gene056174 | MS.gene53786 | 0.809098 | 2.24E-50 | -1.69E-46 |
MS.gene05686 | MS.gene53786 | 0.81758 | 3.06E-52 | -1.69E-46 |
MS.gene056973 | MS.gene53786 | 0.807078 | 6.03E-50 | -1.69E-46 |
MS.gene057026 | MS.gene53786 | 0.800333 | 1.51E-48 | -1.69E-46 |
MS.gene057208 | MS.gene53786 | 0.806223 | 9.13E-50 | -1.69E-46 |
MS.gene057598 | MS.gene53786 | 0.813897 | 2.03E-51 | -1.69E-46 |
MS.gene058010 | MS.gene53786 | 0.803594 | 3.24E-49 | -1.69E-46 |
MS.gene058625 | MS.gene53786 | 0.808212 | 3.46E-50 | -1.69E-46 |
MS.gene058979 | MS.gene53786 | 0.844114 | 9.24E-59 | -1.69E-46 |
MS.gene05925 | MS.gene53786 | 0.815061 | 1.12E-51 | -1.69E-46 |
MS.gene059625 | MS.gene53786 | 0.826793 | 2.23E-54 | -1.69E-46 |
MS.gene060011 | MS.gene53786 | 0.827416 | 1.58E-54 | -1.69E-46 |
MS.gene060134 | MS.gene53786 | 0.817326 | 3.49E-52 | -1.69E-46 |
MS.gene060167 | MS.gene53786 | 0.824308 | 8.66E-54 | -1.69E-46 |
MS.gene060310 | MS.gene53786 | 0.808307 | 3.30E-50 | -1.69E-46 |
MS.gene060373 | MS.gene53786 | 0.832623 | 8.50E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53786.t1 | MTR_3g091650 | 89.844 | 128 | 13 | 0 | 89 | 216 | 203 | 330 | 6.22e-72 | 231 |
MS.gene53786.t1 | MTR_3g091650 | 89.844 | 128 | 13 | 0 | 89 | 216 | 203 | 330 | 3.68e-71 | 231 |
MS.gene53786.t1 | MTR_8g012340 | 66.949 | 118 | 34 | 3 | 19 | 136 | 281 | 393 | 6.39e-40 | 144 |
MS.gene53786.t1 | MTR_8g010620 | 58.197 | 122 | 45 | 3 | 16 | 136 | 80 | 196 | 3.94e-35 | 127 |
MS.gene53786.t1 | MTR_8g010620 | 58.197 | 122 | 45 | 3 | 16 | 136 | 147 | 263 | 2.11e-34 | 126 |
MS.gene53786.t1 | MTR_8g010620 | 58.197 | 122 | 45 | 3 | 16 | 136 | 183 | 299 | 2.94e-34 | 126 |
MS.gene53786.t1 | MTR_8g010620 | 58.197 | 122 | 45 | 3 | 16 | 136 | 208 | 324 | 4.15e-34 | 126 |
MS.gene53786.t1 | MTR_7g053470 | 58.065 | 124 | 45 | 4 | 16 | 139 | 272 | 388 | 2.45e-33 | 125 |
MS.gene53786.t1 | MTR_8g011100 | 59.664 | 119 | 42 | 3 | 19 | 136 | 197 | 310 | 2.59e-33 | 124 |
MS.gene53786.t1 | MTR_8g038785 | 80.263 | 76 | 9 | 1 | 16 | 91 | 413 | 482 | 3.60e-32 | 122 |
MS.gene53786.t1 | MTR_8g080980 | 53.659 | 123 | 50 | 3 | 17 | 139 | 277 | 392 | 9.64e-29 | 113 |
MS.gene53786.t1 | MTR_8g008640 | 52.941 | 119 | 54 | 2 | 16 | 134 | 203 | 319 | 1.04e-27 | 110 |
MS.gene53786.t1 | MTR_8g011560 | 52.778 | 108 | 43 | 3 | 32 | 136 | 26 | 128 | 8.77e-24 | 95.5 |
MS.gene53786.t1 | MTR_8g011140 | 73.770 | 61 | 13 | 1 | 26 | 83 | 161 | 221 | 2.43e-22 | 92.0 |
MS.gene53786.t1 | MTR_8g023740 | 72.000 | 50 | 13 | 1 | 16 | 65 | 105 | 153 | 2.70e-17 | 76.3 |
MS.gene53786.t1 | MTR_1g017870 | 55.405 | 74 | 31 | 1 | 16 | 89 | 64 | 135 | 8.88e-16 | 75.1 |
MS.gene53786.t1 | MTR_1g017870 | 55.405 | 74 | 31 | 1 | 16 | 89 | 64 | 135 | 1.17e-15 | 75.1 |
MS.gene53786.t1 | MTR_1g017870 | 55.405 | 74 | 31 | 1 | 16 | 89 | 148 | 219 | 1.32e-15 | 75.1 |
MS.gene53786.t1 | MTR_1g017870 | 55.405 | 74 | 31 | 1 | 16 | 89 | 148 | 219 | 1.48e-15 | 75.1 |
MS.gene53786.t1 | MTR_1g017870 | 55.405 | 74 | 31 | 1 | 16 | 89 | 250 | 321 | 1.67e-15 | 75.1 |
MS.gene53786.t1 | MTR_1g017870 | 55.405 | 74 | 31 | 1 | 16 | 89 | 274 | 345 | 2.31e-15 | 74.7 |
MS.gene53786.t1 | MTR_1g017870 | 55.405 | 74 | 31 | 1 | 16 | 89 | 274 | 345 | 2.36e-15 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53786.t1 | AT3G25230 | 62.376 | 101 | 36 | 2 | 16 | 116 | 277 | 375 | 9.58e-31 | 118 |
MS.gene53786.t1 | AT3G25230 | 62.376 | 101 | 36 | 2 | 16 | 116 | 277 | 375 | 1.24e-30 | 118 |
MS.gene53786.t1 | AT5G48570 | 54.331 | 127 | 51 | 4 | 14 | 139 | 284 | 404 | 3.21e-29 | 114 |
MS.gene53786.t1 | AT5G53020 | 39.844 | 128 | 56 | 4 | 89 | 214 | 161 | 269 | 2.38e-16 | 77.8 |
MS.gene53786.t1 | AT5G53020 | 39.844 | 128 | 56 | 4 | 89 | 214 | 161 | 269 | 2.38e-16 | 77.8 |
MS.gene53786.t1 | AT5G53020 | 39.844 | 128 | 56 | 4 | 89 | 214 | 161 | 269 | 2.38e-16 | 77.8 |
MS.gene53786.t1 | AT5G53020 | 39.844 | 128 | 56 | 4 | 89 | 214 | 161 | 269 | 2.38e-16 | 77.8 |
MS.gene53786.t1 | AT5G53020 | 39.844 | 128 | 56 | 4 | 89 | 214 | 161 | 269 | 2.38e-16 | 77.8 |
MS.gene53786.t1 | AT5G53020 | 39.844 | 128 | 56 | 4 | 89 | 214 | 161 | 269 | 2.38e-16 | 77.8 |
MS.gene53786.t1 | AT5G53020 | 39.844 | 128 | 56 | 4 | 89 | 214 | 161 | 269 | 2.38e-16 | 77.8 |
MS.gene53786.t1 | AT5G53020 | 39.844 | 128 | 56 | 4 | 89 | 214 | 161 | 269 | 2.38e-16 | 77.8 |
MS.gene53786.t1 | AT5G53020 | 39.844 | 128 | 56 | 4 | 89 | 214 | 161 | 269 | 2.38e-16 | 77.8 |
MS.gene53786.t1 | AT5G53020 | 39.844 | 128 | 56 | 4 | 89 | 214 | 152 | 260 | 2.81e-16 | 77.4 |
Find 30 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAAAATTTCACAAGGATT+TGG | 0.229217 | 7.2:-70294258 | MS.gene53786:CDS |
ATCTTTGCAGTGAAAGTAAT+TGG | 0.273802 | 7.2:-70294971 | MS.gene53786:intron |
TTAAGTTATCAAAGATTAGA+AGG | 0.298370 | 7.2:-70294154 | MS.gene53786:CDS |
CGGTCGCACTGTTATGCATT+TGG | 0.321613 | 7.2:-70294363 | MS.gene53786:CDS |
GCTAAGATAAGCAAAATTTC+AGG | 0.323149 | 7.2:-70295258 | MS.gene53786:intron |
TTTACAACAGCTCCATCATT+TGG | 0.367497 | 7.2:+70295084 | None:intergenic |
CAAAGAGGAGTCTGATTTGA+TGG | 0.372221 | 7.2:-70294303 | MS.gene53786:CDS |
TGCTACCTCACCCTTCTTCA+TGG | 0.373091 | 7.2:+70294737 | None:intergenic |
TGAGCAGAGCAAGTGATTGA+TGG | 0.470924 | 7.2:-70294780 | MS.gene53786:intron |
GATGGTTCAGAAATTCACTT+TGG | 0.497055 | 7.2:-70294285 | MS.gene53786:CDS |
GGATATGAGTGTCCAAATGA+TGG | 0.517360 | 7.2:-70295096 | MS.gene53786:CDS |
GGAGGAACTTATTTCTGTCA+TGG | 0.518018 | 7.2:-70294330 | MS.gene53786:CDS |
AGCTGTAATGACCATGAAGA+AGG | 0.522299 | 7.2:-70294748 | MS.gene53786:CDS |
AAAGCAAATGCTGTTGAAAG+AGG | 0.523700 | 7.2:-70294177 | MS.gene53786:CDS |
GAGCAGAGCAAGTGATTGAT+GGG | 0.549453 | 7.2:-70294779 | MS.gene53786:intron |
TATCAAAATATTGTCAAGGA+AGG | 0.562743 | 7.2:-70295123 | MS.gene53786:CDS |
AGACATCTTGCAGCAGAACT+CGG | 0.574753 | 7.2:-70294383 | MS.gene53786:CDS |
TATGCATTTGGATGCTACAA+AGG | 0.577556 | 7.2:-70294351 | MS.gene53786:CDS |
AAATGGAGAGAAGATTCAGA+AGG | 0.581106 | 7.2:-70294107 | MS.gene53786:CDS |
GTTTGAATTCACAAGAGATG+AGG | 0.584171 | 7.2:-70294888 | MS.gene53786:CDS |
TTTGAATTCACAAGAGATGA+GGG | 0.588141 | 7.2:-70294887 | MS.gene53786:intron |
TTCTGTCATGGAGAACAAAG+AGG | 0.590110 | 7.2:-70294318 | MS.gene53786:CDS |
AATATTGTCAAGGAAGGAGA+AGG | 0.591534 | 7.2:-70295117 | MS.gene53786:CDS |
AGGGTATCAAAATATTGTCA+AGG | 0.599506 | 7.2:-70295127 | MS.gene53786:CDS |
GCTGTAATGACCATGAAGAA+GGG | 0.607177 | 7.2:-70294747 | MS.gene53786:CDS |
AATGACCATGAAGAAGGGTG+AGG | 0.610564 | 7.2:-70294742 | MS.gene53786:CDS |
GCATTTGGATGCTACAAAGG+AGG | 0.627843 | 7.2:-70294348 | MS.gene53786:CDS |
GGAGATTGCAAAATTTCACA+AGG | 0.637872 | 7.2:-70294264 | MS.gene53786:CDS |
GCGAACATAAGCGAAATGCA+AGG | 0.645192 | 7.2:-70295282 | None:intergenic |
GCTCTGTTTCATCATCGCCA+TGG | 0.646782 | 7.2:+70294912 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATCATTGAAAACTAAATG+AGG | + | chr7.2:70294655-70294674 | None:intergenic | 20.0% |
!! | TATATTAAAATCATGTCCTA+TGG | - | chr7.2:70294852-70294871 | MS.gene53786:intron | 20.0% |
!! | TGGTACAAAAACAAATTTAT+GGG | + | chr7.2:70294495-70294514 | None:intergenic | 20.0% |
!! | TTAAGTTATCAAAGATTAGA+AGG | - | chr7.2:70295168-70295187 | MS.gene53786:intron | 20.0% |
!! | TTGGTACAAAAACAAATTTA+TGG | + | chr7.2:70294496-70294515 | None:intergenic | 20.0% |
!!! | CGTTTTTTACTATGATATTT+TGG | - | chr7.2:70294773-70294792 | MS.gene53786:CDS | 20.0% |
! | AAAAACAAATTTATGGGAGA+GGG | + | chr7.2:70294489-70294508 | None:intergenic | 25.0% |
! | CGTTAGTAATTTCAATCTTT+AGG | + | chr7.2:70294755-70294774 | None:intergenic | 25.0% |
! | TATCAAAATATTGTCAAGGA+AGG | - | chr7.2:70294199-70294218 | MS.gene53786:CDS | 25.0% |
! | TGTAAAGCTTTCAAAATACA+AGG | - | chr7.2:70294100-70294119 | MS.gene53786:CDS | 25.0% |
AATAACATTCTTCTGATCTC+AGG | - | chr7.2:70294877-70294896 | MS.gene53786:intron | 30.0% | |
ACAAAGCAACAAAATCAAAG+AGG | + | chr7.2:70294126-70294145 | None:intergenic | 30.0% | |
AGAAGAATGTTATTGACCAT+AGG | + | chr7.2:70294871-70294890 | None:intergenic | 30.0% | |
ATCATCATTGATGCTAATGA+AGG | - | chr7.2:70294267-70294286 | MS.gene53786:CDS | 30.0% | |
ATCTTTGCAGTGAAAGTAAT+TGG | - | chr7.2:70294351-70294370 | MS.gene53786:CDS | 30.0% | |
CAAAAACAAATTTATGGGAG+AGG | + | chr7.2:70294490-70294509 | None:intergenic | 30.0% | |
CTTCTTGTCATCAATTACTT+CGG | + | chr7.2:70294177-70294196 | None:intergenic | 30.0% | |
GCTAAGATAAGCAAAATTTC+AGG | - | chr7.2:70294064-70294083 | MS.gene53786:CDS | 30.0% | |
TGCAAAATTTCACAAGGATT+TGG | - | chr7.2:70295064-70295083 | MS.gene53786:intron | 30.0% | |
TGCACTAAATCCATTATGAA+AGG | + | chr7.2:70294300-70294319 | None:intergenic | 30.0% | |
TTTGAATTCACAAGAGATGA+GGG | - | chr7.2:70294435-70294454 | MS.gene53786:intron | 30.0% | |
! | AAATTTTGTCAGCAATGTTG+AGG | - | chr7.2:70295099-70295118 | MS.gene53786:CDS | 30.0% |
! | AGGGTATCAAAATATTGTCA+AGG | - | chr7.2:70294195-70294214 | MS.gene53786:CDS | 30.0% |
! | CTTTGTTTCTTTGATGTGTT+GGG | - | chr7.2:70294140-70294159 | MS.gene53786:CDS | 30.0% |
! | GAAGTAATTGATGACAAGAA+GGG | - | chr7.2:70294176-70294195 | MS.gene53786:CDS | 30.0% |
! | TCAATGATTTGATAACTACC+AGG | - | chr7.2:70294665-70294684 | MS.gene53786:intron | 30.0% |
!! | AGCACTGTATTTTTGAAGAA+GGG | - | chr7.2:70294387-70294406 | MS.gene53786:CDS | 30.0% |
!! | TAGCACTGTATTTTTGAAGA+AGG | - | chr7.2:70294386-70294405 | MS.gene53786:CDS | 30.0% |
!! | TTCATAATGGATTTAGTGCA+TGG | - | chr7.2:70294300-70294319 | MS.gene53786:CDS | 30.0% |
!!! | AAACATTGACTTTTGTCAGT+TGG | + | chr7.2:70294515-70294534 | None:intergenic | 30.0% |
AAAGCAAATGCTGTTGAAAG+AGG | - | chr7.2:70295145-70295164 | MS.gene53786:intron | 35.0% | |
AAATGGAGAGAAGATTCAGA+AGG | - | chr7.2:70295215-70295234 | MS.gene53786:intron | 35.0% | |
AATATTGTCAAGGAAGGAGA+AGG | - | chr7.2:70294205-70294224 | MS.gene53786:CDS | 35.0% | |
CTGAGCATGAAACAGAAAAA+TGG | - | chr7.2:70295198-70295217 | MS.gene53786:intron | 35.0% | |
GATGGTTCAGAAATTCACTT+TGG | - | chr7.2:70295037-70295056 | MS.gene53786:intron | 35.0% | |
GGAGATTGCAAAATTTCACA+AGG | - | chr7.2:70295058-70295077 | MS.gene53786:intron | 35.0% | |
GTTTGAATTCACAAGAGATG+AGG | - | chr7.2:70294434-70294453 | MS.gene53786:intron | 35.0% | |
TACTTTGACAGTTTGTGTGT+TGG | - | chr7.2:70294827-70294846 | MS.gene53786:intron | 35.0% | |
TATGCATTTGGATGCTACAA+AGG | - | chr7.2:70294971-70294990 | MS.gene53786:intron | 35.0% | |
TTTACAACAGCTCCATCATT+TGG | + | chr7.2:70294241-70294260 | None:intergenic | 35.0% | |
! | CGAAGTAATTGATGACAAGA+AGG | - | chr7.2:70294175-70294194 | MS.gene53786:CDS | 35.0% |
!! | GCTTTGTTTCTTTGATGTGT+TGG | - | chr7.2:70294139-70294158 | MS.gene53786:CDS | 35.0% |
AAGTACCATCTCTTCAACAC+TGG | - | chr7.2:70294692-70294711 | MS.gene53786:intron | 40.0% | |
AGCTGTAATGACCATGAAGA+AGG | - | chr7.2:70294574-70294593 | MS.gene53786:intron | 40.0% | |
AGGCTCTCTTCCTTTCATAA+TGG | - | chr7.2:70294287-70294306 | MS.gene53786:CDS | 40.0% | |
CACTGCAAAGATGCAAAATG+AGG | + | chr7.2:70294343-70294362 | None:intergenic | 40.0% | |
GCTGTAATGACCATGAAGAA+GGG | - | chr7.2:70294575-70294594 | MS.gene53786:intron | 40.0% | |
GGATATGAGTGTCCAAATGA+TGG | - | chr7.2:70294226-70294245 | MS.gene53786:CDS | 40.0% | |
TTCTGTCATGGAGAACAAAG+AGG | - | chr7.2:70295004-70295023 | MS.gene53786:intron | 40.0% | |
! | CAAAGAGGAGTCTGATTTGA+TGG | - | chr7.2:70295019-70295038 | MS.gene53786:intron | 40.0% |
!! | GGAGGAACTTATTTCTGTCA+TGG | - | chr7.2:70294992-70295011 | MS.gene53786:intron | 40.0% |
!! | GTATTTTTGAAGAAGGGCCA+TGG | - | chr7.2:70294393-70294412 | MS.gene53786:CDS | 40.0% |
AAGAGATGGTACTTCGAACC+TGG | + | chr7.2:70294686-70294705 | None:intergenic | 45.0% | |
AATGACCATGAAGAAGGGTG+AGG | - | chr7.2:70294580-70294599 | MS.gene53786:intron | 45.0% | |
AGACATCTTGCAGCAGAACT+CGG | - | chr7.2:70294939-70294958 | MS.gene53786:CDS | 45.0% | |
GAGCAGAGCAAGTGATTGAT+GGG | - | chr7.2:70294543-70294562 | MS.gene53786:intron | 45.0% | |
GCATTTGGATGCTACAAAGG+AGG | - | chr7.2:70294974-70294993 | MS.gene53786:intron | 45.0% | |
TACCATCTCTTCAACACTGG+TGG | - | chr7.2:70294695-70294714 | MS.gene53786:intron | 45.0% | |
TGAGCAGAGCAAGTGATTGA+TGG | - | chr7.2:70294542-70294561 | MS.gene53786:intron | 45.0% | |
CGGTCGCACTGTTATGCATT+TGG | - | chr7.2:70294959-70294978 | MS.gene53786:CDS | 50.0% | |
GCTCTGTTTCATCATCGCCA+TGG | + | chr7.2:70294413-70294432 | None:intergenic | 50.0% | |
TGCTACCTCACCCTTCTTCA+TGG | + | chr7.2:70294588-70294607 | None:intergenic | 50.0% | |
! | GTCCACCAGTGTTGAAGAGA+TGG | + | chr7.2:70294700-70294719 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 70294055 | 70295289 | 70294055 | ID=MS.gene53786 |
chr7.2 | mRNA | 70294055 | 70295289 | 70294055 | ID=MS.gene53786.t1;Parent=MS.gene53786 |
chr7.2 | exon | 70295259 | 70295289 | 70295259 | ID=MS.gene53786.t1.exon1;Parent=MS.gene53786.t1 |
chr7.2 | CDS | 70295259 | 70295289 | 70295259 | ID=cds.MS.gene53786.t1;Parent=MS.gene53786.t1 |
chr7.2 | exon | 70295082 | 70295150 | 70295082 | ID=MS.gene53786.t1.exon2;Parent=MS.gene53786.t1 |
chr7.2 | CDS | 70295082 | 70295150 | 70295082 | ID=cds.MS.gene53786.t1;Parent=MS.gene53786.t1 |
chr7.2 | exon | 70294888 | 70294983 | 70294888 | ID=MS.gene53786.t1.exon3;Parent=MS.gene53786.t1 |
chr7.2 | CDS | 70294888 | 70294983 | 70294888 | ID=cds.MS.gene53786.t1;Parent=MS.gene53786.t1 |
chr7.2 | exon | 70294723 | 70294795 | 70294723 | ID=MS.gene53786.t1.exon4;Parent=MS.gene53786.t1 |
chr7.2 | CDS | 70294723 | 70294795 | 70294723 | ID=cds.MS.gene53786.t1;Parent=MS.gene53786.t1 |
chr7.2 | exon | 70294055 | 70294445 | 70294055 | ID=MS.gene53786.t1.exon5;Parent=MS.gene53786.t1 |
chr7.2 | CDS | 70294055 | 70294445 | 70294055 | ID=cds.MS.gene53786.t1;Parent=MS.gene53786.t1 |
Gene Sequence |
Protein sequence |