AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053202

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053202.t1 MTR_4g130820 64.659 747 236 11 1 739 1 727 0.0 950
MS.gene053202.t1 MTR_1g028370 50.000 746 324 13 14 744 5 716 0.0 716
MS.gene053202.t1 MTR_3g091080 50.136 738 325 9 14 739 4 710 0.0 713
MS.gene053202.t1 MTR_2g460590 52.199 682 293 6 82 744 24 691 0.0 709
MS.gene053202.t1 MTR_3g109030 52.395 668 294 8 89 739 61 721 0.0 677
MS.gene053202.t1 MTR_2g094860 49.517 725 327 14 20 738 10 701 0.0 677
MS.gene053202.t1 MTR_7g117310 48.780 738 334 10 17 739 7 715 0.0 666
MS.gene053202.t1 MTR_7g117310 48.780 738 334 10 17 739 19 727 0.0 666
MS.gene053202.t1 MTR_7g117310 51.740 661 287 7 92 739 20 661 0.0 664
MS.gene053202.t1 MTR_4g058730 54.651 602 260 6 69 666 25 617 0.0 664
MS.gene053202.t1 MTR_7g034605 51.156 649 294 10 100 738 43 678 0.0 656
MS.gene053202.t1 MTR_1g064240 51.420 669 293 13 89 742 59 710 0.0 656
MS.gene053202.t1 MTR_8g027755 50.617 648 302 7 97 737 81 717 0.0 645
MS.gene053202.t1 MTR_3g088875 47.654 682 320 11 90 743 20 692 0.0 631
MS.gene053202.t1 MTR_6g477760 40.956 586 310 15 101 666 123 692 1.03e-127 396
MS.gene053202.t1 MTR_6g075290 39.626 588 324 12 100 672 192 763 1.17e-120 380
MS.gene053202.t1 MTR_6g075440 34.429 700 400 18 16 686 90 759 4.69e-117 370
MS.gene053202.t1 MTR_5g007630 38.047 594 324 15 101 678 172 737 4.98e-117 370
MS.gene053202.t1 MTR_6g075440 34.543 689 395 18 16 681 90 745 5.86e-117 370
MS.gene053202.t1 MTR_6g075290 39.160 595 319 16 93 672 156 722 3.83e-110 351
MS.gene053202.t1 MTR_8g464570 35.777 573 348 10 103 664 64 627 5.53e-110 349
MS.gene053202.t1 MTR_6g075290 39.437 568 311 13 120 672 12 561 2.35e-109 344
MS.gene053202.t1 MTR_7g012260 36.333 589 354 9 86 666 102 677 5.78e-109 347
MS.gene053202.t1 MTR_2g081110 34.835 577 351 11 99 664 61 623 3.42e-105 336
MS.gene053202.t1 MTR_6g075410 34.932 584 344 14 100 667 97 660 2.64e-96 313
MS.gene053202.t1 MTR_6g075390 35.596 545 312 13 100 627 114 636 2.14e-92 303
MS.gene053202.t1 MTR_6g076060 36.712 444 249 11 232 660 29 455 2.68e-72 244
MS.gene053202.t1 MTR_6g075320 41.176 119 70 0 100 218 148 266 4.46e-24 103
MS.gene053202.t1 MTR_2g094810 44.954 109 60 0 180 288 12 120 5.27e-24 98.2
MS.gene053202.t1 MTR_4g113530 25.366 205 150 2 379 582 239 441 5.23e-17 86.3
MS.gene053202.t1 MTR_3g108320 25.616 203 148 2 380 582 243 442 2.12e-16 83.6
MS.gene053202.t1 MTR_3g108320 25.616 203 148 2 380 582 243 442 2.14e-16 83.6
MS.gene053202.t1 MTR_3g108320 25.616 203 148 2 380 582 243 442 3.06e-16 83.2
MS.gene053202.t1 MTR_2g006870 24.020 204 152 2 379 582 262 462 6.90e-15 79.3
MS.gene053202.t1 MTR_5g077770 24.194 186 138 2 374 559 277 459 1.34e-12 72.0
MS.gene053202.t1 MTR_8g046440 19.792 192 153 1 374 565 29 219 5.59e-11 65.1
MS.gene053202.t1 MTR_6g075460 41.250 80 45 2 599 676 45 124 6.76e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053202.t1 AT1G19780 68.428 757 214 11 6 744 2 751 0.0 1023
MS.gene053202.t1 AT1G15990 68.000 750 210 14 6 739 2 737 0.0 997
MS.gene053202.t1 AT2G23980 62.781 755 254 10 1 739 1 744 0.0 953
MS.gene053202.t1 AT2G23980 62.781 755 254 10 1 739 1 744 0.0 953
MS.gene053202.t1 AT2G23980 62.781 755 254 10 1 739 1 744 0.0 953
MS.gene053202.t1 AT2G23980 62.781 755 254 10 1 739 1 744 0.0 953
MS.gene053202.t1 AT2G23980 62.781 755 254 10 1 739 1 744 0.0 953
MS.gene053202.t1 AT4G30560 63.298 752 240 9 1 739 1 729 0.0 947
MS.gene053202.t1 AT4G30560 63.298 752 240 9 1 739 1 729 0.0 947
MS.gene053202.t1 AT5G57940 64.441 734 238 8 11 739 1 716 0.0 944
MS.gene053202.t1 AT5G57940 64.441 734 238 8 11 739 1 716 0.0 944
MS.gene053202.t1 AT2G23980 60.925 778 254 11 1 739 1 767 0.0 939
MS.gene053202.t1 AT2G23980 60.925 778 254 11 1 739 1 767 0.0 939
MS.gene053202.t1 AT2G23980 60.925 778 254 11 1 739 1 767 0.0 939
MS.gene053202.t1 AT2G23980 60.925 778 254 11 1 739 1 767 0.0 939
MS.gene053202.t1 AT5G57940 63.896 734 235 8 11 739 1 709 0.0 931
MS.gene053202.t1 AT2G23980 63.049 728 246 9 24 739 1 717 0.0 928
MS.gene053202.t1 AT4G30560 63.636 726 231 8 24 739 1 703 0.0 925
MS.gene053202.t1 AT4G30560 63.636 726 231 8 24 739 1 703 0.0 925
MS.gene053202.t1 AT4G30560 63.636 726 231 8 24 739 1 703 0.0 925
MS.gene053202.t1 AT1G19780 70.480 542 143 8 217 744 2 540 0.0 754
MS.gene053202.t1 AT1G01340 53.858 661 278 6 92 739 59 705 0.0 719
MS.gene053202.t1 AT1G01340 53.858 661 278 6 92 739 54 700 0.0 719
MS.gene053202.t1 AT4G01010 51.489 705 293 11 53 741 24 695 0.0 704
MS.gene053202.t1 AT4G01010 51.489 705 293 11 53 741 24 695 0.0 704
MS.gene053202.t1 AT5G53130 49.730 742 326 10 14 739 4 714 0.0 691
MS.gene053202.t1 AT2G24610 52.444 675 287 11 89 739 60 724 0.0 681
MS.gene053202.t1 AT2G28260 50.946 687 305 8 55 739 21 677 0.0 681
MS.gene053202.t1 AT2G24610 52.444 675 287 11 89 739 75 739 0.0 680
MS.gene053202.t1 AT2G28260 52.024 667 289 7 74 739 1 637 0.0 679
MS.gene053202.t1 AT4G30360 51.672 658 299 10 99 743 69 720 0.0 655
MS.gene053202.t1 AT2G46430 47.241 743 327 12 14 737 5 701 0.0 654
MS.gene053202.t1 AT2G46430 47.241 743 327 12 14 737 5 701 0.0 654
MS.gene053202.t1 AT5G14870 49.552 670 303 9 98 738 37 700 0.0 648
MS.gene053202.t1 AT3G48010 47.640 678 303 12 98 737 41 704 0.0 624
MS.gene053202.t1 AT2G46440 43.178 623 310 13 99 706 28 621 1.51e-161 481
MS.gene053202.t1 AT2G46450 38.321 655 343 16 99 735 28 639 8.65e-148 446
MS.gene053202.t1 AT2G46450 38.321 655 343 16 99 735 28 639 8.65e-148 446
MS.gene053202.t1 AT2G46450 37.405 655 326 17 99 735 15 603 6.45e-140 425
MS.gene053202.t1 AT2G46450 37.405 655 326 17 99 735 28 616 6.86e-140 425
MS.gene053202.t1 AT2G46440 46.567 466 209 9 256 706 3 443 1.17e-129 392
MS.gene053202.t1 AT3G17690 37.394 591 339 14 90 667 147 719 1.58e-118 373
MS.gene053202.t1 AT3G17700 37.544 570 328 10 101 658 192 745 2.77e-115 365
MS.gene053202.t1 AT5G15410 36.678 578 347 9 94 658 105 676 2.73e-108 346
MS.gene053202.t1 AT5G15410 36.678 578 347 9 94 658 106 677 3.46e-108 346
MS.gene053202.t1 AT5G54250 34.828 580 354 11 100 664 78 648 2.27e-107 343
MS.gene053202.t1 AT5G54250 34.828 580 354 11 100 664 78 648 2.27e-107 343
MS.gene053202.t1 AT5G54250 34.828 580 354 11 100 664 78 648 2.27e-107 343
MS.gene053202.t1 AT3G17690 37.698 504 292 10 90 589 147 632 4.62e-105 335
MS.gene053202.t1 AT3G17700 37.576 495 292 7 101 594 192 670 3.63e-103 332
MS.gene053202.t1 AT5G54250 34.138 580 353 12 100 664 78 643 6.20e-102 328
MS.gene053202.t1 AT3G17690 35.171 381 232 8 90 466 147 516 1.33e-65 227
MS.gene053202.t1 AT4G22200 24.020 204 152 2 379 582 263 463 2.37e-16 83.6
MS.gene053202.t1 AT4G22200 24.020 204 152 2 379 582 263 463 5.49e-16 82.8
MS.gene053202.t1 AT5G37500 21.915 470 272 13 99 561 55 436 3.28e-15 80.5
MS.gene053202.t1 AT5G37500 21.915 470 272 13 99 561 55 436 4.14e-15 80.1
MS.gene053202.t1 AT5G37500 20.940 468 279 12 99 561 55 436 4.92e-15 79.7
MS.gene053202.t1 AT5G37500 21.078 408 251 9 155 561 45 382 1.17e-14 78.6
MS.gene053202.t1 AT2G26650 23.902 205 153 2 379 582 239 441 3.43e-14 77.0
MS.gene053202.t1 AT2G26650 23.902 205 153 2 379 582 134 336 4.77e-14 76.6
MS.gene053202.t1 AT5G46240 22.727 198 152 1 379 576 246 442 5.70e-14 76.3
MS.gene053202.t1 AT3G02850 20.902 488 293 14 83 563 56 457 1.05e-13 75.5
MS.gene053202.t1 AT3G02850 20.902 488 293 14 83 563 56 457 1.16e-13 75.1
MS.gene053202.t1 AT3G02850 20.697 488 294 14 83 563 56 457 1.71e-13 74.3
MS.gene053202.t1 AT4G32650 23.153 203 153 2 380 582 276 475 1.54e-12 71.2
MS.gene053202.t1 AT4G32650 23.153 203 153 2 380 582 276 475 2.13e-12 71.2
MS.gene053202.t1 AT4G32650 23.153 203 153 2 380 582 276 475 2.37e-12 70.9

Find 148 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATAGTAATAGCTATTA+TGG 0.126403 4.2:+92468292 MS.gene053202:CDS
GGCAAGCTTGCTGCAGATTT+TGG 0.164117 4.2:-92469043 None:intergenic
GGTGGGGACTTCAGAATTTA+AGG 0.170474 4.2:+92467836 MS.gene053202:CDS
CCTCAAAGTTCGTCAAAATT+TGG 0.172842 4.2:+92469346 MS.gene053202:CDS
GCACCTTCATCTCGAGTATT+TGG 0.204342 4.2:+92466709 MS.gene053202:CDS
CCATAGACAGTAACAAAATT+TGG 0.208171 4.2:-92467815 None:intergenic
CTGCATGGAGGAAGCATTTA+AGG 0.231374 4.2:+92469239 MS.gene053202:CDS
TTCTGCAAGGGCATTGGTTC+CGG 0.240596 4.2:+92469321 MS.gene053202:CDS
TGTGACACTTTAAGATCTTC+TGG 0.248692 4.2:-92466448 None:intergenic
ATATCTCTTCTAAGATCTTT+TGG 0.250851 4.2:-92468624 None:intergenic
ATTTCGAGTCGGAGTGAAAA+AGG 0.263032 4.2:+92466363 MS.gene053202:CDS
ACTTGCTAGCTTGTTATCTA+TGG 0.279932 4.2:-92466608 None:intergenic
CAGAGAAGACTTACATAGTT+AGG 0.283571 4.2:+92468870 MS.gene053202:CDS
AGGGGTCGATGAAGAAAATT+TGG 0.285665 4.2:+92468590 MS.gene053202:CDS
CCCCATAATAGCTATTACTA+TGG 0.288425 4.2:-92468294 None:intergenic
GATATTTCATTATTGACTTC+TGG 0.297261 4.2:+92466785 MS.gene053202:CDS
AAATTTGGGGAAAACTTCTA+TGG 0.302110 4.2:-92467800 None:intergenic
ATGATGCAGGTTGGATGATT+TGG 0.310402 4.2:+92466228 MS.gene053202:intron
CATAGACAGTAACAAAATTT+GGG 0.315147 4.2:-92467814 None:intergenic
GTGCTCTTTGCTCTTCTGAT+TGG 0.318517 4.2:+92468320 MS.gene053202:CDS
CAATGAAGGCGGTGCGGAAT+TGG 0.323385 4.2:-92466687 None:intergenic
TCCATAGTAATAGCTATTAT+GGG 0.333113 4.2:+92468293 MS.gene053202:CDS
AATCAGGTTCTGAGGGCTTT+GGG 0.347993 4.2:-92469459 None:intergenic
CGCAAGACGCATGGAGGTAT+TGG 0.348515 4.2:+92466964 MS.gene053202:CDS
AAATCAGGTTCTGAGGGCTT+TGG 0.350213 4.2:-92469460 None:intergenic
TTCATCCCACTTGAGCTAGA+TGG 0.351952 4.2:-92466268 None:intergenic
TCAGATGGACTAATGAATAT+TGG 0.360085 4.2:+92466388 MS.gene053202:CDS
TCAATCAATGTCGGTTCGTC+TGG 0.370374 4.2:+92468452 MS.gene053202:CDS
TCTGCAAGGGCATTGGTTCC+GGG 0.372776 4.2:+92469322 MS.gene053202:CDS
GCTAGATGGCATTGACGAAT+TGG 0.374592 4.2:-92466254 None:intergenic
AATGGTACGGTTCATACCTT+TGG 0.384471 4.2:+92467036 MS.gene053202:CDS
ATACAACAGTCTATGCTTCT+CGG 0.384722 4.2:+92469374 MS.gene053202:CDS
TCATTGAGAGCACTGAAATC+AGG 0.396573 4.2:-92469475 None:intergenic
AAGATAAGAATCTTCTGTAT+TGG 0.406036 4.2:+92466491 MS.gene053202:CDS
CTTGCAGAATCATCACTTCC+CGG 0.414286 4.2:-92469307 None:intergenic
CGGTTTGCTGCTAATCTTCG+TGG 0.417955 4.2:+92469394 MS.gene053202:CDS
ATGAACAGCATCTCATCAAC+TGG 0.419571 4.2:-92468902 None:intergenic
TTCACGGTTCTTGTTGATGA+TGG 0.422131 4.2:-92469064 None:intergenic
TACCTCACTCATAGCTTTCA+CGG 0.425446 4.2:-92469080 None:intergenic
TACGATTTGTGGTTGAAATA+CGG 0.428941 4.2:-92466577 None:intergenic
GTCTGTACTGCCACTGCCAC+AGG 0.435030 4.2:+92466807 MS.gene053202:CDS
CACTCAAAAGTGGAGTCACT+TGG 0.446602 4.2:+92466416 MS.gene053202:CDS
TCCATTGTTGCGAATAGAAA+CGG 0.447494 4.2:-92469189 None:intergenic
GTGCCATGTACTATTTGATC+TGG 0.449942 4.2:+92467110 MS.gene053202:CDS
GGGTGTTCAACCACTTGTAT+TGG 0.454525 4.2:-92468566 None:intergenic
ATGGAAAACAAAACCTCTCC+AGG 0.456409 4.2:-92468275 None:intergenic
TGGCTAAACAATACGATTTG+TGG 0.457799 4.2:-92466588 None:intergenic
GGTATGAACCGTACCATTCT+CGG 0.464303 4.2:-92467031 None:intergenic
GCATCATCGCTTGCTTCCTC+CGG 0.465125 4.2:+92468515 MS.gene053202:CDS
GCTTGCTTCCTCCGGACCTA+AGG 0.465489 4.2:+92468523 MS.gene053202:CDS
AAAGCATGTAAAGAAGTTGA+AGG 0.466723 4.2:+92467604 MS.gene053202:CDS
GGTGAACTTGTCATAGATCC+TGG 0.473833 4.2:+92466736 MS.gene053202:CDS
CCGCGGCCGGGAATAGGAAA+AGG 0.476908 4.2:-92466319 None:intergenic
TTCACCAGCTCTCTTGAACT+TGG 0.484399 4.2:-92469433 None:intergenic
TGATGATTCTGCAAGGGCAT+TGG 0.485990 4.2:+92469315 MS.gene053202:CDS
CTGACTCTTTCCCTTAGGTC+CGG 0.486118 4.2:-92468534 None:intergenic
AGCGTCTGACTCTTTCCCTT+AGG 0.488363 4.2:-92468539 None:intergenic
TTCTTCACAATGTTTGACTC+TGG 0.491771 4.2:+92465810 None:intergenic
AGAGAAGACTTACATAGTTA+GGG 0.493349 4.2:+92468871 MS.gene053202:CDS
TATCGCTTTGCGATCAATCC+AGG 0.494047 4.2:-92466754 None:intergenic
TAGAACGTAACGACACATGC+TGG 0.500625 4.2:+92467578 MS.gene053202:CDS
GGTTCCTCTCTTTGCTAACA+TGG 0.504157 4.2:+92468796 MS.gene053202:intron
GGCATTTGCTTTAGAAGCAG+AGG 0.505619 4.2:+92469105 MS.gene053202:CDS
AATTCACATTTCTTGTATTG+TGG 0.506801 4.2:+92467631 MS.gene053202:CDS
TTTGTTTGAATTTAGTCAGA+AGG 0.518058 4.2:+92468658 MS.gene053202:CDS
ACTCAAAAGTGGAGTCACTT+GGG 0.520420 4.2:+92466417 MS.gene053202:CDS
TACAGAAGATTCTTATCTTG+AGG 0.521699 4.2:-92466487 None:intergenic
TCGAGATGAAGGTGCAATGA+AGG 0.522257 4.2:-92466701 None:intergenic
ATTCGCAACAATGGAGAACA+TGG 0.522904 4.2:+92469197 MS.gene053202:CDS
GACGAACCGACATTGATTGA+AGG 0.524267 4.2:-92468449 None:intergenic
GTATCTCAAACCTGTGGCAG+TGG 0.526783 4.2:-92466817 None:intergenic
TGGAGGAAATGAGGATCAAA+AGG 0.526808 4.2:+92468472 MS.gene053202:CDS
TCCGTTTCTATTCGCAACAA+TGG 0.528384 4.2:+92469188 MS.gene053202:CDS
TCTTTATAGCGCAAGACGCA+TGG 0.530371 4.2:+92466955 MS.gene053202:CDS
AGAGTTGCTAACATGGGCAT+TGG 0.533440 4.2:+92469018 MS.gene053202:CDS
TCATCTCGAGTATTTGGAAG+AGG 0.535503 4.2:+92466715 MS.gene053202:CDS
TTTCACAGTACACTTGGTCA+GGG 0.537219 4.2:+92468233 MS.gene053202:intron
GAAAGCTATGAGTGAGGTAG+AGG 0.537681 4.2:+92469084 MS.gene053202:CDS
CTAGAGAGTGTTACTACAGA+TGG 0.541421 4.2:+92468938 MS.gene053202:CDS
AGTTCAAGTAAGCATATACC+AGG 0.542819 4.2:+92467655 MS.gene053202:CDS
GTCTTCTCTGTATATAAACT+CGG 0.543647 4.2:-92468857 None:intergenic
TAGACACATACATAGTAGAC+AGG 0.544177 4.2:+92469153 MS.gene053202:CDS
ATCAATGTCGGTTCGTCTGG+AGG 0.548219 4.2:+92468455 MS.gene053202:CDS
ATATACCAGGGTATGAAAGT+TGG 0.549829 4.2:+92467668 MS.gene053202:CDS
TTGTTTGAATTTAGTCAGAA+GGG 0.551796 4.2:+92468659 MS.gene053202:CDS
GCACTGAAATCAGGTTCTGA+GGG 0.551873 4.2:-92469466 None:intergenic
AGAAGTGGCTTCTTCAACAG+AGG 0.551875 4.2:+92468965 MS.gene053202:CDS
CTTGCTTCCTCCGGACCTAA+GGG 0.552988 4.2:+92468524 MS.gene053202:CDS
TACAAGTCACGGTATATTGA+AGG 0.553006 4.2:+92465834 MS.gene053202:CDS
ATTGGAAGATCACTCAAAAG+TGG 0.553145 4.2:+92466406 MS.gene053202:CDS
AGCACTGAAATCAGGTTCTG+AGG 0.553944 4.2:-92469467 None:intergenic
TTTGACGAACTTTGAGGACC+CGG 0.557037 4.2:-92469340 None:intergenic
TTGCAGAATCATCACTTCCC+GGG 0.558557 4.2:-92469306 None:intergenic
CGGTTCGTCTGGAGGAAATG+AGG 0.562037 4.2:+92468463 MS.gene053202:CDS
AGTACCAAGTTCAAGAGAGC+TGG 0.565279 4.2:+92469429 MS.gene053202:CDS
CTTCCAAATACTCGAGATGA+AGG 0.565402 4.2:-92466712 None:intergenic
TCTTCTGATTGGAAACATGC+AGG 0.565687 4.2:+92468331 MS.gene053202:CDS
GAGATGCTGTTCATCATTCG+TGG 0.566373 4.2:+92468911 MS.gene053202:CDS
ACTACAGATGGTGGAAGAAG+TGG 0.567107 4.2:+92468950 MS.gene053202:CDS
TGTTGTAGATTGTAGTGTGG+AGG 0.567262 4.2:+92466930 MS.gene053202:intron
ATACTACGAATCTGATTACC+CGG 0.576933 4.2:+92469288 MS.gene053202:CDS
TTCACAGTACACTTGGTCAG+GGG 0.577586 4.2:+92468234 MS.gene053202:intron
TCAATGCCATCTAGCTCAAG+TGG 0.579410 4.2:+92466262 MS.gene053202:CDS
TTTAAGGCGAAGGCGAAGGA+AGG 0.579780 4.2:+92469255 MS.gene053202:CDS
CCATAGTAATAGCTATTATG+GGG 0.581237 4.2:+92468294 MS.gene053202:CDS
CTCAAAAGTGGAGTCACTTG+GGG 0.583096 4.2:+92466418 MS.gene053202:CDS
TTTCTCCAACTTTCATACCC+TGG 0.585593 4.2:-92467673 None:intergenic
AGCATTTAAGGCGAAGGCGA+AGG 0.589667 4.2:+92469251 MS.gene053202:CDS
CAATCTATATTCAAGCTGCA+TGG 0.590954 4.2:+92469224 MS.gene053202:CDS
ACGGTATATTGAAGGTCAGA+AGG 0.591374 4.2:+92465842 MS.gene053202:CDS
GGAGGAAGCATTTAAGGCGA+AGG 0.591557 4.2:+92469245 MS.gene053202:CDS
TTGACTCTGGTTACAAGTCA+CGG 0.595950 4.2:+92465823 MS.gene053202:CDS
GCGATGATGCATCCACTGCT+CGG 0.598686 4.2:-92468502 None:intergenic
GTTTGTTGTAGATTGTAGTG+TGG 0.607307 4.2:+92466927 MS.gene053202:intron
GACTAGTACCTACCCTGGAG+AGG 0.607375 4.2:+92468262 MS.gene053202:CDS
GAGAGTGTTACTACAGATGG+TGG 0.613056 4.2:+92468941 MS.gene053202:CDS
GACCTACCTTCAATCAATGT+CGG 0.613772 4.2:+92468443 MS.gene053202:intron
AAGGCGAAGGCGAAGGAAGG+AGG 0.615424 4.2:+92469258 MS.gene053202:CDS
ACTCTTTCCCTTAGGTCCGG+AGG 0.617015 4.2:-92468531 None:intergenic
AAAGGCGTGACTCCGAGCAG+TGG 0.621729 4.2:+92468490 MS.gene053202:CDS
AAACAAAACCTCTCCAGGGT+AGG 0.625990 4.2:-92468270 None:intergenic
GTGGTGAAGAGTTGCTAACA+TGG 0.626286 4.2:+92469011 MS.gene053202:CDS
CGGGAAGTGATGATTCTGCA+AGG 0.626896 4.2:+92469308 MS.gene053202:CDS
AAGACTTACATAGTTAGGGA+AGG 0.629987 4.2:+92468875 MS.gene053202:CDS
TACAAGTGGTTGAACACCCG+AGG 0.630986 4.2:+92468570 MS.gene053202:CDS
GACGCTACGACCAATACAAG+TGG 0.637852 4.2:+92468556 MS.gene053202:CDS
TGGAAAACAAAACCTCTCCA+GGG 0.644846 4.2:-92468274 None:intergenic
TCGTCGAAATCATTTCGAGT+CGG 0.644882 4.2:+92466352 MS.gene053202:CDS
TCGTCCATGTTAGCAAAGAG+AGG 0.645418 4.2:-92468800 None:intergenic
GGGAAGTGATGATTCTGCAA+GGG 0.645571 4.2:+92469309 MS.gene053202:CDS
ATACCAGATCAAATAGTACA+TGG 0.646335 4.2:-92467113 None:intergenic
CAATGCCATCTAGCTCAAGT+GGG 0.666519 4.2:+92466263 MS.gene053202:CDS
ATAGACAGTAACAAAATTTG+GGG 0.668163 4.2:-92467813 None:intergenic
GTCAGAAGGAGAAATTTGTG+AGG 0.668583 4.2:+92465856 MS.gene053202:CDS
TGTAGATAACGGGTTCTGTG+TGG 0.671626 4.2:+92467542 MS.gene053202:intron
CTTCTGACTAGTACCTACCC+TGG 0.672528 4.2:+92468257 MS.gene053202:CDS
AGATGAAGGTGCAATGAAGG+CGG 0.673510 4.2:-92466698 None:intergenic
ACAAGTGGTTGAACACCCGA+GGG 0.676415 4.2:+92468571 MS.gene053202:CDS
AACCGTGAAAGCTATGAGTG+AGG 0.683734 4.2:+92469078 MS.gene053202:CDS
TTCGCAACAATGGAGAACAT+GGG 0.684012 4.2:+92469198 MS.gene053202:CDS
TACTACGAATCTGATTACCC+GGG 0.696386 4.2:+92469289 MS.gene053202:CDS
TGGTGAAGAGTTGCTAACAT+GGG 0.697702 4.2:+92469012 MS.gene053202:CDS
AAGGTGCAATGAAGGCGGTG+CGG 0.699069 4.2:-92466693 None:intergenic
AACCGACATTGATTGAAGGT+AGG 0.702813 4.2:-92468445 None:intergenic
TCTATATTCAAGCTGCATGG+AGG 0.707083 4.2:+92469227 MS.gene053202:CDS
TTATAGCGCAAGACGCATGG+AGG 0.742423 4.2:+92466958 MS.gene053202:CDS
GTTCAAGTAAGCATATACCA+GGG 0.749555 4.2:+92467656 MS.gene053202:CDS
CAAGTGGTTGAACACCCGAG+GGG 0.768003 4.2:+92468572 MS.gene053202:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATATGTATTAGTGT+CGG + chr4.2:92467959-92467978 MS.gene053202:intron 15.0%
!! ATATTTATAAAGGATGATAT+AGG - chr4.2:92468130-92468149 None:intergenic 15.0%
!! ATGTTTACAGTAAAAACTTT+CGG - chr4.2:92468361-92468380 None:intergenic 20.0%
!! GAATCAAAGCATATTTATAA+AGG - chr4.2:92468140-92468159 None:intergenic 20.0%
!!! ACTATTATTTTGTAGATAAC+GGG + chr4.2:92467532-92467551 MS.gene053202:intron 20.0%
!!! GACTATTATTTTGTAGATAA+CGG + chr4.2:92467531-92467550 MS.gene053202:intron 20.0%
!!! TATATTCCACTTTAAGTTTA+GGG + chr4.2:92466152-92466171 MS.gene053202:intron 20.0%
!!! TATTGGTTAATTTAAGAACA+TGG + chr4.2:92466094-92466113 MS.gene053202:intron 20.0%
!!! TGTGAGGTATTTTTATTTTT+GGG + chr4.2:92465872-92465891 MS.gene053202:intron 20.0%
!!! TTATAAACTGAGTGTTTTAT+AGG - chr4.2:92467922-92467941 None:intergenic 20.0%
!!! TTATATTCCACTTTAAGTTT+AGG + chr4.2:92466151-92466170 MS.gene053202:intron 20.0%
!!! TTGTGAGGTATTTTTATTTT+TGG + chr4.2:92465871-92465890 MS.gene053202:intron 20.0%
! AAGATAAGAATCTTCTGTAT+TGG + chr4.2:92466491-92466510 MS.gene053202:CDS 25.0%
! AAGCAAAACAGAATGATATT+TGG - chr4.2:92468214-92468233 None:intergenic 25.0%
! AATTCACATTTCTTGTATTG+TGG + chr4.2:92467631-92467650 MS.gene053202:CDS 25.0%
! AGATGCTTATGTTAACAAAT+TGG - chr4.2:92466188-92466207 None:intergenic 25.0%
! ATAGACAGTAACAAAATTTG+GGG - chr4.2:92467816-92467835 None:intergenic 25.0%
! CAACAAACATTAAGACATAT+TGG - chr4.2:92466915-92466934 None:intergenic 25.0%
! CATAGACAGTAACAAAATTT+GGG - chr4.2:92467817-92467836 None:intergenic 25.0%
! GTATAACATATCAATGTGAT+TGG + chr4.2:92465894-92465913 MS.gene053202:intron 25.0%
! TATCATTCACATATTCTCTT+TGG + chr4.2:92467265-92467284 MS.gene053202:intron 25.0%
! TCCATAGTAATAGCTATTAT+GGG + chr4.2:92468293-92468312 MS.gene053202:CDS 25.0%
! TCTTAAGAAATGAACTTACA+TGG - chr4.2:92467150-92467169 None:intergenic 25.0%
! TGAGAAAATAAAGAGTTAGA+AGG - chr4.2:92468745-92468764 None:intergenic 25.0%
! TTCCATAGTAATAGCTATTA+TGG + chr4.2:92468292-92468311 MS.gene053202:CDS 25.0%
! TTGTTTGAATTTAGTCAGAA+GGG + chr4.2:92468659-92468678 MS.gene053202:CDS 25.0%
! TTTGTTTGAATTTAGTCAGA+AGG + chr4.2:92468658-92468677 MS.gene053202:CDS 25.0%
!! ATTTTCTCATTAACATTCTG+TGG + chr4.2:92468756-92468775 MS.gene053202:intron 25.0%
!! TAGAAAAATTGGATGCTTTT+TGG - chr4.2:92467309-92467328 None:intergenic 25.0%
!!! AAAAGCATCCAATTTTTCTA+TGG + chr4.2:92467309-92467328 MS.gene053202:intron 25.0%
!!! AATAAATTTTGGTGTCCAAT+CGG - chr4.2:92467382-92467401 None:intergenic 25.0%
!!! ATATCTCTTCTAAGATCTTT+TGG - chr4.2:92468627-92468646 None:intergenic 25.0%
!!! ATGAGGAGTATCAATTTTAA+TGG - chr4.2:92467342-92467361 None:intergenic 25.0%
!!! GATATTTCATTATTGACTTC+TGG + chr4.2:92466785-92466804 MS.gene053202:CDS 25.0%
!!! GTTTTATAGGTGTTATAAAG+AGG - chr4.2:92467909-92467928 None:intergenic 25.0%
!!! TGAGGAGTATCAATTTTAAT+GGG - chr4.2:92467341-92467360 None:intergenic 25.0%
AAAGCATGTAAAGAAGTTGA+AGG + chr4.2:92467604-92467623 MS.gene053202:CDS 30.0%
AAATTTGGGGAAAACTTCTA+TGG - chr4.2:92467803-92467822 None:intergenic 30.0%
AATTAACCAATAGAACCAAG+TGG - chr4.2:92466086-92466105 None:intergenic 30.0%
AGAGAAGACTTACATAGTTA+GGG + chr4.2:92468871-92468890 MS.gene053202:CDS 30.0%
ATACCAGATCAAATAGTACA+TGG - chr4.2:92467116-92467135 None:intergenic 30.0%
ATGGCTAATGTGAAAAACAT+AGG - chr4.2:92467988-92468007 None:intergenic 30.0%
ATTGTAGATTCACTTGATGT+TGG + chr4.2:92468099-92468118 MS.gene053202:intron 30.0%
CCAATTGCATTTATAACACA+AGG - chr4.2:92468420-92468439 None:intergenic 30.0%
CCATAGACAGTAACAAAATT+TGG - chr4.2:92467818-92467837 None:intergenic 30.0%
CCATAGTAATAGCTATTATG+GGG + chr4.2:92468294-92468313 MS.gene053202:CDS 30.0%
CCTTGTGTTATAAATGCAAT+TGG + chr4.2:92468417-92468436 MS.gene053202:intron 30.0%
CTCGATAGATTTGTCATTAA+CGG + chr4.2:92466049-92466068 MS.gene053202:intron 30.0%
GGAAGTTTCCATAGAAAAAT+TGG - chr4.2:92467320-92467339 None:intergenic 30.0%
GTCTTCTCTGTATATAAACT+CGG - chr4.2:92468860-92468879 None:intergenic 30.0%
GTGGATGACATATATTATTC+AGG + chr4.2:92468775-92468794 MS.gene053202:intron 30.0%
GTTAGAATAGATTACGCTAT+AGG + chr4.2:92467457-92467476 MS.gene053202:intron 30.0%
TACAGAAGATTCTTATCTTG+AGG - chr4.2:92466490-92466509 None:intergenic 30.0%
TACGATTTGTGGTTGAAATA+CGG - chr4.2:92466580-92466599 None:intergenic 30.0%
TACGGAAGATAGAAAAAGAA+AGG - chr4.2:92466562-92466581 None:intergenic 30.0%
TCTTTCAGACTAATATACAG+TGG + chr4.2:92466205-92466224 MS.gene053202:intron 30.0%
TTGTAGATATTCTGACATAG+AGG + chr4.2:92467435-92467454 MS.gene053202:intron 30.0%
TTGTAGATTCACTTGATGTT+GGG + chr4.2:92468100-92468119 MS.gene053202:intron 30.0%
! AATATTTTCCGAGAATGGTA+CGG + chr4.2:92467023-92467042 MS.gene053202:CDS 30.0%
! AATTTTGTTACTGTCTATGG+TGG + chr4.2:92467818-92467837 MS.gene053202:CDS 30.0%
! ATTTTGTTACTGTCTATGGT+GGG + chr4.2:92467819-92467838 MS.gene053202:CDS 30.0%
! CCAAATTTTGTTACTGTCTA+TGG + chr4.2:92467815-92467834 MS.gene053202:CDS 30.0%
! CTCCATAAAAGAAAAAGTGT+TGG + chr4.2:92467225-92467244 MS.gene053202:intron 30.0%
! GACTCTATTAATCTGGATTT+TGG + chr4.2:92465967-92465986 MS.gene053202:intron 30.0%
! TCTGGTCTTTATATCAAAGT+CGG + chr4.2:92468036-92468055 MS.gene053202:intron 30.0%
!! GATAACTCAGCTTTTAACTA+TGG + chr4.2:92467739-92467758 MS.gene053202:CDS 30.0%
!! TATTAATCTGGATTTTGGTC+AGG + chr4.2:92465972-92465991 MS.gene053202:intron 30.0%
!! TCAGATGGACTAATGAATAT+TGG + chr4.2:92466388-92466407 MS.gene053202:CDS 30.0%
!! TTTTCTGAAAATGCATTGCT+TGG + chr4.2:92467088-92467107 MS.gene053202:CDS 30.0%
!!! ATAAATTTTGGTGTCCAATC+GGG - chr4.2:92467381-92467400 None:intergenic 30.0%
!!! CACCAACACTTTTTCTTTTA+TGG - chr4.2:92467230-92467249 None:intergenic 30.0%
!!! TTTTTAACTTCTGAAGCCAA+AGG - chr4.2:92467055-92467074 None:intergenic 30.0%
AAGACTTACATAGTTAGGGA+AGG + chr4.2:92468875-92468894 MS.gene053202:CDS 35.0%
AGAATAGATTACGCTATAGG+CGG + chr4.2:92467460-92467479 MS.gene053202:intron 35.0%
AGTTCAAGTAAGCATATACC+AGG + chr4.2:92467655-92467674 MS.gene053202:CDS 35.0%
ATACAACAGTCTATGCTTCT+CGG + chr4.2:92469374-92469393 MS.gene053202:CDS 35.0%
ATACTACGAATCTGATTACC+CGG + chr4.2:92469288-92469307 MS.gene053202:CDS 35.0%
ATATACCAGGGTATGAAAGT+TGG + chr4.2:92467668-92467687 MS.gene053202:CDS 35.0%
ATTGGAAGATCACTCAAAAG+TGG + chr4.2:92466406-92466425 MS.gene053202:CDS 35.0%
CAAAACATATTGAGCATGGA+TGG - chr4.2:92466842-92466861 None:intergenic 35.0%
CAATCTATATTCAAGCTGCA+TGG + chr4.2:92469224-92469243 MS.gene053202:CDS 35.0%
CAGAGAAGACTTACATAGTT+AGG + chr4.2:92468870-92468889 MS.gene053202:CDS 35.0%
CATAAGTGATACAGAAGCAA+TGG - chr4.2:92467194-92467213 None:intergenic 35.0%
CCCCATAATAGCTATTACTA+TGG - chr4.2:92468297-92468316 None:intergenic 35.0%
CCTCAAAGTTCGTCAAAATT+TGG + chr4.2:92469346-92469365 MS.gene053202:CDS 35.0%
GAAACATTGATCATTCGTGT+CGG - chr4.2:92467506-92467525 None:intergenic 35.0%
GAACCAGAGAGTTAAGATAA+CGG - chr4.2:92465933-92465952 None:intergenic 35.0%
GGAAAGAGACTCTATTAATC+TGG + chr4.2:92465960-92465979 MS.gene053202:intron 35.0%
GTTCAAGTAAGCATATACCA+GGG + chr4.2:92467656-92467675 MS.gene053202:CDS 35.0%
TAATATACAGTGGATGATGC+AGG + chr4.2:92466215-92466234 MS.gene053202:intron 35.0%
TACAAGTCACGGTATATTGA+AGG + chr4.2:92465834-92465853 MS.gene053202:CDS 35.0%
TACGCAAAACATATTGAGCA+TGG - chr4.2:92466846-92466865 None:intergenic 35.0%
TAGACACATACATAGTAGAC+AGG + chr4.2:92469153-92469172 MS.gene053202:CDS 35.0%
TCAGAAGTTAAAAAGACAGC+TGG + chr4.2:92467061-92467080 MS.gene053202:CDS 35.0%
TCCATTGTTGCGAATAGAAA+CGG - chr4.2:92469192-92469211 None:intergenic 35.0%
TCTGTATCACTTATGAAGCT+CGG + chr4.2:92467199-92467218 MS.gene053202:intron 35.0%
TGCAATGAGAAATCTCAGAA+AGG - chr4.2:92468709-92468728 None:intergenic 35.0%
TGCATACCCTAAACTTAAAG+TGG - chr4.2:92466161-92466180 None:intergenic 35.0%
TGGCTAAACAATACGATTTG+TGG - chr4.2:92466591-92466610 None:intergenic 35.0%
TTTCCGTTATCTTAACTCTC+TGG + chr4.2:92465927-92465946 MS.gene053202:intron 35.0%
! AATCTATCGAGAGTATATCC+AGG - chr4.2:92466040-92466059 None:intergenic 35.0%
! CATGCAATATTTTCCGAGAA+TGG + chr4.2:92467018-92467037 MS.gene053202:CDS 35.0%
! GAAGTATCAAGAAGTGTATG+AGG - chr4.2:92467359-92467378 None:intergenic 35.0%
! TTGAAGGAAGGTGATTTTTG+TGG + chr4.2:92468992-92469011 MS.gene053202:CDS 35.0%
! TTTTCACATTAGCCATGTAG+AGG + chr4.2:92467992-92468011 MS.gene053202:intron 35.0%
! TTTTGTTACTGTCTATGGTG+GGG + chr4.2:92467820-92467839 MS.gene053202:CDS 35.0%
!! ACTTGCTAGCTTGTTATCTA+TGG - chr4.2:92466611-92466630 None:intergenic 35.0%
!! CATTAACCACTTGGTTCTAT+TGG + chr4.2:92466077-92466096 MS.gene053202:intron 35.0%
!! CCAAATTTTGACGAACTTTG+AGG - chr4.2:92469349-92469368 None:intergenic 35.0%
!! GTTTGTTGTAGATTGTAGTG+TGG + chr4.2:92466927-92466946 MS.gene053202:intron 35.0%
!! TATCTTAACTCTCTGGTTCT+CGG + chr4.2:92465934-92465953 MS.gene053202:intron 35.0%
!! TGTGACACTTTAAGATCTTC+TGG - chr4.2:92466451-92466470 None:intergenic 35.0%
!! TTTGCTTTTCACAGTACACT+TGG + chr4.2:92468227-92468246 MS.gene053202:intron 35.0%
AAAGACCAGACACACGATAT+GGG - chr4.2:92468026-92468045 None:intergenic 40.0%
AATGGTACGGTTCATACCTT+TGG + chr4.2:92467036-92467055 MS.gene053202:CDS 40.0%
ACGGAAGTTCATTAACCACT+TGG + chr4.2:92466068-92466087 MS.gene053202:intron 40.0%
ACGGTATATTGAAGGTCAGA+AGG + chr4.2:92465842-92465861 MS.gene053202:CDS 40.0%
ACTCAAAAGTGGAGTCACTT+GGG + chr4.2:92466417-92466436 MS.gene053202:CDS 40.0%
ACTTCTTGATACTTCCCGAT+TGG + chr4.2:92467364-92467383 MS.gene053202:intron 40.0%
AGGGGTCGATGAAGAAAATT+TGG + chr4.2:92468590-92468609 MS.gene053202:CDS 40.0%
ATGAACAGCATCTCATCAAC+TGG - chr4.2:92468905-92468924 None:intergenic 40.0%
ATGGAAAACAAAACCTCTCC+AGG - chr4.2:92468278-92468297 None:intergenic 40.0%
ATTCGCAACAATGGAGAACA+TGG + chr4.2:92469197-92469216 MS.gene053202:CDS 40.0%
CTTCCAAATACTCGAGATGA+AGG - chr4.2:92466715-92466734 None:intergenic 40.0%
GACCTACCTTCAATCAATGT+CGG + chr4.2:92468443-92468462 MS.gene053202:intron 40.0%
GTCAGAAGGAGAAATTTGTG+AGG + chr4.2:92465856-92465875 MS.gene053202:CDS 40.0%
GTGCCATGTACTATTTGATC+TGG + chr4.2:92467110-92467129 MS.gene053202:CDS 40.0%
TAAAGACCAGACACACGATA+TGG - chr4.2:92468027-92468046 None:intergenic 40.0%
TACCTCACTCATAGCTTTCA+CGG - chr4.2:92469083-92469102 None:intergenic 40.0%
TACTACGAATCTGATTACCC+GGG + chr4.2:92469289-92469308 MS.gene053202:CDS 40.0%
TCATCTCGAGTATTTGGAAG+AGG + chr4.2:92466715-92466734 MS.gene053202:CDS 40.0%
TCCGTTTCTATTCGCAACAA+TGG + chr4.2:92469188-92469207 MS.gene053202:CDS 40.0%
TCTATATTCAAGCTGCATGG+AGG + chr4.2:92469227-92469246 MS.gene053202:CDS 40.0%
TCTTCTGATTGGAAACATGC+AGG + chr4.2:92468331-92468350 MS.gene053202:CDS 40.0%
TGGAAAACAAAACCTCTCCA+GGG - chr4.2:92468277-92468296 None:intergenic 40.0%
TGGAGGAAATGAGGATCAAA+AGG + chr4.2:92468472-92468491 MS.gene053202:CDS 40.0%
TGGTGAAGAGTTGCTAACAT+GGG + chr4.2:92469012-92469031 MS.gene053202:CDS 40.0%
TGTTGTAGATTGTAGTGTGG+AGG + chr4.2:92466930-92466949 MS.gene053202:intron 40.0%
TTCGCAACAATGGAGAACAT+GGG + chr4.2:92469198-92469217 MS.gene053202:CDS 40.0%
TTGACTCTGGTTACAAGTCA+CGG + chr4.2:92465823-92465842 MS.gene053202:CDS 40.0%
TTTCACAGTACACTTGGTCA+GGG + chr4.2:92468233-92468252 MS.gene053202:intron 40.0%
TTTCTCCAACTTTCATACCC+TGG - chr4.2:92467676-92467695 None:intergenic 40.0%
! AACCGACATTGATTGAAGGT+AGG - chr4.2:92468448-92468467 None:intergenic 40.0%
! AATTTTCTTCATCGACCCCT+CGG - chr4.2:92468590-92468609 None:intergenic 40.0%
! ATCGAGAGTATATCCAGGTT+CGG - chr4.2:92466035-92466054 None:intergenic 40.0%
! ATGATGCAGGTTGGATGATT+TGG + chr4.2:92466228-92466247 MS.gene053202:intron 40.0%
! ATTTCGAGTCGGAGTGAAAA+AGG + chr4.2:92466363-92466382 MS.gene053202:CDS 40.0%
! TCGTCGAAATCATTTCGAGT+CGG + chr4.2:92466352-92466371 MS.gene053202:CDS 40.0%
! TGTTTGCCTTTTCCTATTCC+CGG + chr4.2:92466313-92466332 MS.gene053202:CDS 40.0%
! TTCACGGTTCTTGTTGATGA+TGG - chr4.2:92469067-92469086 None:intergenic 40.0%
! TTTCGAGTCGGAGTGAAAAA+GGG + chr4.2:92466364-92466383 MS.gene053202:CDS 40.0%
! TTTTCACAGTACACTTGGTC+AGG + chr4.2:92468232-92468251 MS.gene053202:intron 40.0%
!! AATCTGGATTTTGGTCAGGT+TGG + chr4.2:92465976-92465995 MS.gene053202:intron 40.0%
!! ATCTTAACTCTCTGGTTCTC+GGG + chr4.2:92465935-92465954 MS.gene053202:intron 40.0%
!! CTAGAGAGTGTTACTACAGA+TGG + chr4.2:92468938-92468957 MS.gene053202:CDS 40.0%
!! CTTCAACAGAGGAGTTTTGA+AGG + chr4.2:92468976-92468995 MS.gene053202:CDS 40.0%
!! TCATTGAGAGCACTGAAATC+AGG - chr4.2:92469478-92469497 None:intergenic 40.0%
!!! AACAGAGGAGTTTTGAAGGA+AGG + chr4.2:92468980-92468999 MS.gene053202:CDS 40.0%
!!! TCGACGAATTTTTTTTCCCG+CGG - chr4.2:92466339-92466358 None:intergenic 40.0%
AAACAAAACCTCTCCAGGGT+AGG - chr4.2:92468273-92468292 None:intergenic 45.0%
AACCGTGAAAGCTATGAGTG+AGG + chr4.2:92469078-92469097 MS.gene053202:CDS 45.0%
AGAAGTGGCTTCTTCAACAG+AGG + chr4.2:92468965-92468984 MS.gene053202:CDS 45.0%
AGAGTTGCTAACATGGGCAT+TGG + chr4.2:92469018-92469037 MS.gene053202:CDS 45.0%
AGTACCAAGTTCAAGAGAGC+TGG + chr4.2:92469429-92469448 MS.gene053202:CDS 45.0%
ATACAGTGGATGATGCAGGT+TGG + chr4.2:92466219-92466238 MS.gene053202:intron 45.0%
CACTCAAAAGTGGAGTCACT+TGG + chr4.2:92466416-92466435 MS.gene053202:CDS 45.0%
CTCAAAAGTGGAGTCACTTG+GGG + chr4.2:92466418-92466437 MS.gene053202:CDS 45.0%
CTTGCAGAATCATCACTTCC+CGG - chr4.2:92469310-92469329 None:intergenic 45.0%
GAAAGCTATGAGTGAGGTAG+AGG + chr4.2:92469084-92469103 MS.gene053202:CDS 45.0%
GAGATGCTGTTCATCATTCG+TGG + chr4.2:92468911-92468930 MS.gene053202:CDS 45.0%
GCACCTTCATCTCGAGTATT+TGG + chr4.2:92466709-92466728 MS.gene053202:CDS 45.0%
GGAGTGAAAAAGGGATCAGA+TGG + chr4.2:92466373-92466392 MS.gene053202:CDS 45.0%
GGGAAGTGATGATTCTGCAA+GGG + chr4.2:92469309-92469328 MS.gene053202:CDS 45.0%
GGGTGTTCAACCACTTGTAT+TGG - chr4.2:92468569-92468588 None:intergenic 45.0%
GGTATGAACCGTACCATTCT+CGG - chr4.2:92467034-92467053 None:intergenic 45.0%
GGTGAACTTGTCATAGATCC+TGG + chr4.2:92466736-92466755 MS.gene053202:CDS 45.0%
GGTGGGGACTTCAGAATTTA+AGG + chr4.2:92467836-92467855 MS.gene053202:CDS 45.0%
GGTTCCTCTCTTTGCTAACA+TGG + chr4.2:92468796-92468815 MS.gene053202:intron 45.0%
GTGCTCTTTGCTCTTCTGAT+TGG + chr4.2:92468320-92468339 MS.gene053202:CDS 45.0%
GTGGTGAAGAGTTGCTAACA+TGG + chr4.2:92469011-92469030 MS.gene053202:CDS 45.0%
TAGAACGTAACGACACATGC+TGG + chr4.2:92467578-92467597 MS.gene053202:CDS 45.0%
TATCGCTTTGCGATCAATCC+AGG - chr4.2:92466757-92466776 None:intergenic 45.0%
TCGTCCATGTTAGCAAAGAG+AGG - chr4.2:92468803-92468822 None:intergenic 45.0%
TCTTTATAGCGCAAGACGCA+TGG + chr4.2:92466955-92466974 MS.gene053202:CDS 45.0%
TGGATGGTATCTCAAACCTG+TGG - chr4.2:92466826-92466845 None:intergenic 45.0%
TTCACAGTACACTTGGTCAG+GGG + chr4.2:92468234-92468253 MS.gene053202:intron 45.0%
TTCACCAGCTCTCTTGAACT+TGG - chr4.2:92469436-92469455 None:intergenic 45.0%
TTCATCCCACTTGAGCTAGA+TGG - chr4.2:92466271-92466290 None:intergenic 45.0%
TTGCAGAATCATCACTTCCC+GGG - chr4.2:92469309-92469328 None:intergenic 45.0%
! AGATGAAGGTGCAATGAAGG+CGG - chr4.2:92466701-92466720 None:intergenic 45.0%
! AGCACTGAAATCAGGTTCTG+AGG - chr4.2:92469470-92469489 None:intergenic 45.0%
! ATTTTCTTCATCGACCCCTC+GGG - chr4.2:92468589-92468608 None:intergenic 45.0%
! CAATGCCATCTAGCTCAAGT+GGG + chr4.2:92466263-92466282 MS.gene053202:CDS 45.0%
! GACGAACCGACATTGATTGA+AGG - chr4.2:92468452-92468471 None:intergenic 45.0%
! GCACTGAAATCAGGTTCTGA+GGG - chr4.2:92469469-92469488 None:intergenic 45.0%
! TCAATGCCATCTAGCTCAAG+TGG + chr4.2:92466262-92466281 MS.gene053202:CDS 45.0%
! TCGAGATGAAGGTGCAATGA+AGG - chr4.2:92466704-92466723 None:intergenic 45.0%
! TGATGATTCTGCAAGGGCAT+TGG + chr4.2:92469315-92469334 MS.gene053202:CDS 45.0%
! TTTGACGAACTTTGAGGACC+CGG - chr4.2:92469343-92469362 None:intergenic 45.0%
!! AAATCAGGTTCTGAGGGCTT+TGG - chr4.2:92469463-92469482 None:intergenic 45.0%
!! AATCAGGTTCTGAGGGCTTT+GGG - chr4.2:92469462-92469481 None:intergenic 45.0%
!! ACTACAGATGGTGGAAGAAG+TGG + chr4.2:92468950-92468969 MS.gene053202:CDS 45.0%
!! CTGCATGGAGGAAGCATTTA+AGG + chr4.2:92469239-92469258 MS.gene053202:CDS 45.0%
!! GAGAGTGTTACTACAGATGG+TGG + chr4.2:92468941-92468960 MS.gene053202:CDS 45.0%
!! GCTAGATGGCATTGACGAAT+TGG - chr4.2:92466257-92466276 None:intergenic 45.0%
!! GGCATTTGCTTTAGAAGCAG+AGG + chr4.2:92469105-92469124 MS.gene053202:CDS 45.0%
!! TCAATCAATGTCGGTTCGTC+TGG + chr4.2:92468452-92468471 MS.gene053202:CDS 45.0%
!! TCTTAACTCTCTGGTTCTCG+GGG + chr4.2:92465936-92465955 MS.gene053202:intron 45.0%
!! TGTAGATAACGGGTTCTGTG+TGG + chr4.2:92467542-92467561 MS.gene053202:intron 45.0%
!!! AATTGAATATAAATAAATTT+TGG - chr4.2:92467393-92467412 None:intergenic 5.0%
ACAAGTGGTTGAACACCCGA+GGG + chr4.2:92468571-92468590 MS.gene053202:CDS 50.0%
AGCGTCTGACTCTTTCCCTT+AGG - chr4.2:92468542-92468561 None:intergenic 50.0%
ATCCAGGTTCGGATCTTGAC+TGG - chr4.2:92466024-92466043 None:intergenic 50.0%
ATGTGCCCATATCGTGTGTC+TGG + chr4.2:92468018-92468037 MS.gene053202:intron 50.0%
CGGGAAGTGATGATTCTGCA+AGG + chr4.2:92469308-92469327 MS.gene053202:CDS 50.0%
CTGACTCTTTCCCTTAGGTC+CGG - chr4.2:92468537-92468556 None:intergenic 50.0%
CTTCTGACTAGTACCTACCC+TGG + chr4.2:92468257-92468276 MS.gene053202:CDS 50.0%
GACGCTACGACCAATACAAG+TGG + chr4.2:92468556-92468575 MS.gene053202:CDS 50.0%
GTATCTCAAACCTGTGGCAG+TGG - chr4.2:92466820-92466839 None:intergenic 50.0%
TACAAGTGGTTGAACACCCG+AGG + chr4.2:92468570-92468589 MS.gene053202:CDS 50.0%
TTATAGCGCAAGACGCATGG+AGG + chr4.2:92466958-92466977 MS.gene053202:CDS 50.0%
TTCCAGTCAAGATCCGAACC+TGG + chr4.2:92466019-92466038 MS.gene053202:intron 50.0%
! AGCATTTAAGGCGAAGGCGA+AGG + chr4.2:92469251-92469270 MS.gene053202:CDS 50.0%
! TTTAAGGCGAAGGCGAAGGA+AGG + chr4.2:92469255-92469274 MS.gene053202:CDS 50.0%
!! ATCAATGTCGGTTCGTCTGG+AGG + chr4.2:92468455-92468474 MS.gene053202:CDS 50.0%
!! CGGTTTGCTGCTAATCTTCG+TGG + chr4.2:92469394-92469413 MS.gene053202:CDS 50.0%
!! CTTAACTCTCTGGTTCTCGG+GGG + chr4.2:92465937-92465956 MS.gene053202:intron 50.0%
!! GGAGGAAGCATTTAAGGCGA+AGG + chr4.2:92469245-92469264 MS.gene053202:CDS 50.0%
!! TTAACTCTCTGGTTCTCGGG+GGG + chr4.2:92465938-92465957 MS.gene053202:intron 50.0%
!! TTCTGCAAGGGCATTGGTTC+CGG + chr4.2:92469321-92469340 MS.gene053202:CDS 50.0%
!!! CGAATTTTTTTTCCCGCGGC+CGG - chr4.2:92466335-92466354 None:intergenic 50.0%
!!! GAATTTTTTTTCCCGCGGCC+GGG - chr4.2:92466334-92466353 None:intergenic 50.0%
!!! GGCAAGCTTGCTGCAGATTT+TGG - chr4.2:92469046-92469065 None:intergenic 50.0%
AAGGTGCAATGAAGGCGGTG+CGG - chr4.2:92466696-92466715 None:intergenic 55.0%
ACTCTTTCCCTTAGGTCCGG+AGG - chr4.2:92468534-92468553 None:intergenic 55.0%
CAAGTGGTTGAACACCCGAG+GGG + chr4.2:92468572-92468591 MS.gene053202:CDS 55.0%
CAATGAAGGCGGTGCGGAAT+TGG - chr4.2:92466690-92466709 None:intergenic 55.0%
CGGTTCGTCTGGAGGAAATG+AGG + chr4.2:92468463-92468482 MS.gene053202:CDS 55.0%
CTTGCTTCCTCCGGACCTAA+GGG + chr4.2:92468524-92468543 MS.gene053202:CDS 55.0%
GACTAGTACCTACCCTGGAG+AGG + chr4.2:92468262-92468281 MS.gene053202:CDS 55.0%
GCATCATCGCTTGCTTCCTC+CGG + chr4.2:92468515-92468534 MS.gene053202:CDS 55.0%
GCGATGATGCATCCACTGCT+CGG - chr4.2:92468505-92468524 None:intergenic 55.0%
TGGGCACATGCACCTCTACA+TGG - chr4.2:92468007-92468026 None:intergenic 55.0%
! CGCAAGACGCATGGAGGTAT+TGG + chr4.2:92466964-92466983 MS.gene053202:CDS 55.0%
!! TAACTCTCTGGTTCTCGGGG+GGG + chr4.2:92465939-92465958 MS.gene053202:intron 55.0%
!! TCTGCAAGGGCATTGGTTCC+GGG + chr4.2:92469322-92469341 MS.gene053202:CDS 55.0%
AAGGCGAAGGCGAAGGAAGG+AGG + chr4.2:92469258-92469277 MS.gene053202:CDS 60.0%
GCTTGCTTCCTCCGGACCTA+AGG + chr4.2:92468523-92468542 MS.gene053202:CDS 60.0%
GTCTGTACTGCCACTGCCAC+AGG + chr4.2:92466807-92466826 MS.gene053202:CDS 60.0%
! AAAGGCGTGACTCCGAGCAG+TGG + chr4.2:92468490-92468509 MS.gene053202:CDS 60.0%
! CCTTTTCCTATTCCCGGCCG+CGG + chr4.2:92466319-92466338 MS.gene053202:CDS 60.0%
! CTTTTCCTATTCCCGGCCGC+GGG + chr4.2:92466320-92466339 MS.gene053202:CDS 60.0%
! TTTTTCCCGCGGCCGGGAAT+AGG - chr4.2:92466328-92466347 None:intergenic 60.0%
CCGCGGCCGGGAATAGGAAA+AGG - chr4.2:92466322-92466341 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 92465819 92469507 92465819 ID=MS.gene053202
chr4.2 mRNA 92465819 92469507 92465819 ID=MS.gene053202.t1;Parent=MS.gene053202
chr4.2 exon 92465819 92465877 92465819 ID=MS.gene053202.t1.exon1;Parent=MS.gene053202.t1
chr4.2 CDS 92465819 92465877 92465819 ID=cds.MS.gene053202.t1;Parent=MS.gene053202.t1
chr4.2 exon 92466237 92466828 92466237 ID=MS.gene053202.t1.exon2;Parent=MS.gene053202.t1
chr4.2 CDS 92466237 92466828 92466237 ID=cds.MS.gene053202.t1;Parent=MS.gene053202.t1
chr4.2 exon 92466938 92467150 92466938 ID=MS.gene053202.t1.exon3;Parent=MS.gene053202.t1
chr4.2 CDS 92466938 92467150 92466938 ID=cds.MS.gene053202.t1;Parent=MS.gene053202.t1
chr4.2 exon 92467547 92467857 92467547 ID=MS.gene053202.t1.exon4;Parent=MS.gene053202.t1
chr4.2 CDS 92467547 92467857 92467547 ID=cds.MS.gene053202.t1;Parent=MS.gene053202.t1
chr4.2 exon 92468241 92468352 92468241 ID=MS.gene053202.t1.exon5;Parent=MS.gene053202.t1
chr4.2 CDS 92468241 92468352 92468241 ID=cds.MS.gene053202.t1;Parent=MS.gene053202.t1
chr4.2 exon 92468444 92468680 92468444 ID=MS.gene053202.t1.exon6;Parent=MS.gene053202.t1
chr4.2 CDS 92468444 92468680 92468444 ID=cds.MS.gene053202.t1;Parent=MS.gene053202.t1
chr4.2 exon 92468797 92469507 92468797 ID=MS.gene053202.t1.exon7;Parent=MS.gene053202.t1
chr4.2 CDS 92468797 92469507 92468797 ID=cds.MS.gene053202.t1;Parent=MS.gene053202.t1
Gene Sequence

>MS.gene053202

ATGTTTGACTCTGGTTACAAGTCACGGTATATTGAAGGTCAGAAGGAGAAATTTGTGAGGTATTTTTATTTTTGGGTATAACATATCAATGTGATTGGTTACTTTTTTTTTCCGTTATCTTAACTCTCTGGTTCTCGGGGGGGAAAGAGACTCTATTAATCTGGATTTTGGTCAGGTTGGTAAAGTTTGATCAATGATTGTTCCAGTCAAGATCCGAACCTGGATATACTCTCGATAGATTTGTCATTAACGGAAGTTCATTAACCACTTGGTTCTATTGGTTAATTTAAGAACATGGACTAAATTTTGATTTTACTTGCATTTTTTTTTTGTTATATTCCACTTTAAGTTTAGGGTATGCAATGTCCAATTTGTTAACATAAGCATCTTTCAGACTAATATACAGTGGATGATGCAGGTTGGATGATTTGGATTCCAATTCGTCAATGCCATCTAGCTCAAGTGGGATGAAGAAGTTAAGATTTAATTTAGATTGTTTGCCTTTTCCTATTCCCGGCCGCGGGAAAAAAAATTCGTCGAAATCATTTCGAGTCGGAGTGAAAAAGGGATCAGATGGACTAATGAATATTGGAAGATCACTCAAAAGTGGAGTCACTTGGGGAGTTTTTCCAGAAGATCTTAAAGTGTCACAGAAAAAAGTATTTGATCCTCAAGATAAGAATCTTCTGTATTGGAACAAGTTTTTCGAGATTCTATGCATTCTTTCTGTAGCTTGTGATCCTTTCTTTTTCTATCTTCCGTATTTCAACCACAAATCGTATTGTTTAGCCATAGATAACAAGCTAGCAAGTTTTACTGTTACATTGAGAACAATATGTGATTGTATTTATCTCATTCGCATAAGTTTCCAATTCCGCACCGCCTTCATTGCACCTTCATCTCGAGTATTTGGAAGAGGTGAACTTGTCATAGATCCTGGATTGATCGCAAAGCGATATTTACAACGATATTTCATTATTGACTTCTGGTCTGTACTGCCACTGCCACAGGTTTGAGATACCATCCATGCTCAATATGTTTTGCGTACTACGTAATGTCTCATCTCTATTTTATTTTATTTTATTTTTTTTTGCCAATATGTCTTAATGTTTGTTGTAGATTGTAGTGTGGAGGTATCTTTATAGCGCAAGACGCATGGAGGTATTGGATACAAAAACATCACTATTGAGACATGTTATCATGCAATATTTTCCGAGAATGGTACGGTTCATACCTTTGGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAAAATGCATTGCTTGGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGCCATGTAAGTTCATTTCTTAAGACAATTCTTCTGTTTTAATTCTCCATTGCTTCTGTATCACTTATGAAGCTCGGATACTCCATAAAAGAAAAAGTGTTGGTGTCGTATCTGTATCACTATCATTCACATATTCTCTTTGGATATTTCTCGATACGTGTCCAAAAAGCATCCAATTTTTCTATGGAAACTTCCCATTAAAATTGATACTCCTCATACACTTCTTGATACTTCCCGATTGGACACCAAAATTTATTTATATTCAATTTTGAGTTTTAATTATGATGCTTTTGTAGATATTCTGACATAGAGGTTAGAATAGATTACGCTATAGGCGGAAGCTCTAGCATTCTTGTTACCGACACGAATGATCAATGTTTCTTTCTGACTATTATTTTGTAGATAACGGGTTCTGTGTGGTACTTGCTAGCGATAGAACGTAACGACACATGCTGGAAGAAAGCATGTAAAGAAGTTGAAGGATGTAATTCACATTTCTTGTATTGTGGAAGTTCAAGTAAGCATATACCAGGGTATGAAAGTTGGAGAAATGTCAGTCAATCTGTGCTTAAAAGTAAATGCTTTGTTGAAGATGATAACTCAGCTTTTAACTATGGAATCTTTTCTCAAGCTATAGAATCTCATATTGTTGCTTCCATAGAAGTTTTCCCCAAATTTTGTTACTGTCTATGGTGGGGACTTCAGAATTTAAGGTATGTTCTTTCTATGATTCTTTAGAACTATATATTATCTACATGAGTCCTCTTTATAACACCTATAAAACACTCAGTTTATAAATGTAATTATAATTAATAAATATATATGTATTAGTGTCGGTGTCCTATGTTTTTCACATTAGCCATGTAGAGGTGCATGTGCCCATATCGTGTGTCTGGTCTTTATATCAAAGTCGGTGCTTCATATGTCTTAAATCTATAATTTATAGAATTTTAGATTGTAGATTCACTTGATGTTGGGTTAACCTATATCATCCTTTATAAATATGCTTTGATTCTTATTGATTCAAAATATGAACACATAAGATGATAACATGTTCACACTTTGACCAAATATCATTCTGTTTTGCTTTTCACAGTACACTTGGTCAGGGGCTTCTGACTAGTACCTACCCTGGAGAGGTTTTGTTTTCCATAGTAATAGCTATTATGGGGCTTGTGCTCTTTGCTCTTCTGATTGGAAACATGCAGGTAAACCGAAAGTTTTTACTGTAAACATTGATTTATTGCATCTTGATTACTATTATACTTTAATCCTTGTGTTATAAATGCAATTGGACAGACCTACCTTCAATCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGACCTAAGGGAAAGAGTCAGACGCTACGACCAATACAAGTGGTTGAACACCCGAGGGGTCGATGAAGAAAATTTGGTTCAGAGTCTTCCAAAAGATCTTAGAAGAGATATCAAACGTCATCTTTGTTTGAATTTAGTCAGAAGGGTGAGTACTGAGCAAACTAATTTGTCCTTTCTGAGATTTCTCATTGCAACAGAAAAGTGTTCCTTCTAACTCTTTATTTTCTCATTAACATTCTGTGGATGACATATATTATTCAGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGACGCGATATGTGAGCGATTGAAACCGAGTTTATATACAGAGAAGACTTACATAGTTAGGGAAGGTGATCCAGTTGATGAGATGCTGTTCATCATTCGTGGTCGTCTAGAGAGTGTTACTACAGATGGTGGAAGAAGTGGCTTCTTCAACAGAGGAGTTTTGAAGGAAGGTGATTTTTGTGGTGAAGAGTTGCTAACATGGGCATTGGATCCAAAATCTGCAGCAAGCTTGCCATCATCAACAAGAACCGTGAAAGCTATGAGTGAGGTAGAGGCATTTGCTTTAGAAGCAGAGGAATTGAAGTTTGTTGCATCACAGTTTAGACACATACATAGTAGACAGGTTCAGCATACATTCCGTTTCTATTCGCAACAATGGAGAACATGGGCTGCAATCTATATTCAAGCTGCATGGAGGAAGCATTTAAGGCGAAGGCGAAGGAAGGAGGAAGAAGAATACTACGAATCTGATTACCCGGGAAGTGATGATTCTGCAAGGGCATTGGTTCCGGGTCCTCAAAGTTCGTCAAAATTTGGACTTAATACAACAGTCTATGCTTCTCGGTTTGCTGCTAATCTTCGTGGTCATAGACTTCGAGTACCAAGTTCAAGAGAGCTGGTGAATATCCCAAAGCCCTCAGAACCTGATTTCAGTGCTCTCAATGATGAAGAGTGA
Protein sequence

>MS.gene053202.t1

MFDSGYKSRYIEGQKEKFVRLDDLDSNSSMPSSSSGMKKLRFNLDCLPFPIPGRGKKNSSKSFRVGVKKGSDGLMNIGRSLKSGVTWGVFPEDLKVSQKKVFDPQDKNLLYWNKFFEILCILSVACDPFFFYLPYFNHKSYCLAIDNKLASFTVTLRTICDCIYLIRISFQFRTAFIAPSSRVFGRGELVIDPGLIAKRYLQRYFIIDFWSVLPLPQIVVWRYLYSARRMEVLDTKTSLLRHVIMQYFPRMVRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKKACKEVEGCNSHFLYCGSSSKHIPGYESWRNVSQSVLKSKCFVEDDNSAFNYGIFSQAIESHIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVLFSIVIAIMGLVLFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEKTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSAASLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKHLRRRRRKEEEEYYESDYPGSDDSARALVPGPQSSSKFGLNTTVYASRFAANLRGHRLRVPSSRELVNIPKPSEPDFSALNDEE