Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54220.t1 | XP_003611433.1 | 97.3 | 555 | 15 | 0 | 1 | 555 | 1 | 555 | 7.50E-304 | 1052.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54220.t1 | P57750 | 66.5 | 559 | 178 | 6 | 1 | 555 | 1 | 554 | 7.3e-207 | 721.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54220.t1 | G7JZT7 | 97.3 | 555 | 15 | 0 | 1 | 555 | 1 | 555 | 5.4e-304 | 1052.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene54220 | 0.825382 | 4.83E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene54220 | 0.832355 | 9.91E-56 | -1.69E-46 |
| MS.gene049368 | MS.gene54220 | 0.81136 | 7.28E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene54220 | 0.880724 | 4.34E-70 | -1.69E-46 |
| MS.gene049887 | MS.gene54220 | 0.826741 | 2.30E-54 | -1.69E-46 |
| MS.gene050551 | MS.gene54220 | 0.819385 | 1.19E-52 | -1.69E-46 |
| MS.gene050646 | MS.gene54220 | 0.820518 | 6.57E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene54220 | 0.824055 | 9.93E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene54220 | 0.806606 | 7.58E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene54220 | 0.839456 | 1.57E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene54220 | 0.805983 | 1.03E-49 | -1.69E-46 |
| MS.gene051043 | MS.gene54220 | 0.809616 | 1.73E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene54220 | 0.844663 | 6.57E-59 | -1.69E-46 |
| MS.gene051234 | MS.gene54220 | 0.849237 | 3.68E-60 | -1.69E-46 |
| MS.gene051381 | MS.gene54220 | 0.80196 | 7.04E-49 | -1.69E-46 |
| MS.gene051642 | MS.gene54220 | 0.819799 | 9.61E-53 | -1.69E-46 |
| MS.gene051852 | MS.gene54220 | 0.816265 | 6.05E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene54220 | 0.831738 | 1.41E-55 | -1.69E-46 |
| MS.gene052133 | MS.gene54220 | 0.800095 | 1.69E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene54220 | 0.859802 | 3.21E-63 | -1.69E-46 |
| MS.gene052335 | MS.gene54220 | 0.844457 | 7.47E-59 | -1.69E-46 |
| MS.gene052342 | MS.gene54220 | 0.811671 | 6.23E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene54220 | 0.821562 | 3.78E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene54220 | 0.835048 | 2.11E-56 | -1.69E-46 |
| MS.gene052533 | MS.gene54220 | 0.800184 | 1.62E-48 | -1.69E-46 |
| MS.gene052609 | MS.gene54220 | 0.852932 | 3.34E-61 | -1.69E-46 |
| MS.gene053143 | MS.gene54220 | 0.850873 | 1.28E-60 | -1.69E-46 |
| MS.gene053144 | MS.gene54220 | 0.818811 | 1.61E-52 | -1.69E-46 |
| MS.gene05350 | MS.gene54220 | 0.81661 | 5.06E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene54220 | 0.846719 | 1.82E-59 | -1.69E-46 |
| MS.gene054250 | MS.gene54220 | 0.806586 | 7.65E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene54220 | 0.806223 | 9.13E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene54220 | 0.804285 | 2.32E-49 | -1.69E-46 |
| MS.gene054709 | MS.gene54220 | 0.81414 | 1.79E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene54220 | 0.847807 | 9.15E-60 | -1.69E-46 |
| MS.gene055466 | MS.gene54220 | 0.8145 | 1.49E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene54220 | 0.825165 | 5.44E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene54220 | 0.835347 | 1.77E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene54220 | 0.812062 | 5.12E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene54220 | -0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene54220 | 0.815862 | 7.44E-52 | -1.69E-46 |
| MS.gene056390 | MS.gene54220 | 0.808937 | 2.42E-50 | -1.69E-46 |
| MS.gene056677 | MS.gene54220 | 0.806414 | 8.32E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene54220 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene54220 | 0.838316 | 3.09E-57 | -1.69E-46 |
| MS.gene058087 | MS.gene54220 | 0.814468 | 1.52E-51 | -1.69E-46 |
| MS.gene058149 | MS.gene54220 | 0.835218 | 1.91E-56 | -1.69E-46 |
| MS.gene059227 | MS.gene54220 | 0.807412 | 5.12E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene54220 | 0.838065 | 3.59E-57 | -1.69E-46 |
| MS.gene061006 | MS.gene54220 | 0.829117 | 6.16E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene54220 | 0.866884 | 2.06E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54220.t1 | MTR_5g013970 | 97.297 | 555 | 15 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54220.t1 | AT5G18070 | 66.252 | 563 | 173 | 6 | 1 | 555 | 1 | 554 | 0.0 | 746 |
Find 129 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGTTTGCTGTATTTATT+AGG | 0.199901 | 5.1:-6841936 | MS.gene54220:CDS |
| AAACTTGTGGATCAATTCTT+AGG | 0.217228 | 5.1:-6840470 | MS.gene54220:CDS |
| TCAATTTGAGCATTGCTTTC+AGG | 0.217597 | 5.1:+6841985 | None:intergenic |
| CATAATAAAATTTCTGATAA+TGG | 0.249529 | 5.1:-6844370 | MS.gene54220:CDS |
| AAAGGCTGCTTTGAGATTAT+TGG | 0.254305 | 5.1:-6841532 | MS.gene54220:CDS |
| CATACAAGTTTCTGCATTGA+TGG | 0.268685 | 5.1:+6841064 | None:intergenic |
| GGGGTATGTTGTCTCAAAAT+TGG | 0.281185 | 5.1:-6844324 | MS.gene54220:CDS |
| CAGGCCGACTGAAATACTTT+TGG | 0.283967 | 5.1:-6842962 | MS.gene54220:CDS |
| TTCTCCTCAACAACTTCTTC+AGG | 0.285950 | 5.1:-6844269 | MS.gene54220:intron |
| TGCTTTGAGTGGAGTGCTTT+TGG | 0.290699 | 5.1:-6841475 | MS.gene54220:CDS |
| GATGGTTCGTGCTAGAAATA+AGG | 0.298523 | 5.1:-6842728 | MS.gene54220:CDS |
| CTATGAAAGATTCCGAAAAT+AGG | 0.302327 | 5.1:+6841692 | None:intergenic |
| CCTGTTTGCTGTATTTATTA+GGG | 0.309077 | 5.1:-6841935 | MS.gene54220:CDS |
| TGTGGATCAATTCTTAGGTT+AGG | 0.328794 | 5.1:-6840465 | None:intergenic |
| AAGGTTGCTCCACGCGGCTT+TGG | 0.340327 | 5.1:-6842320 | MS.gene54220:CDS |
| GGATTCCGTTTGATGGGTTC+AGG | 0.346566 | 5.1:-6842981 | MS.gene54220:CDS |
| TGAATGGATCAGGTGCTTAA+TGG | 0.346960 | 5.1:-6842540 | MS.gene54220:intron |
| TGTGAGTCCACCTGGTTTGC+AGG | 0.348771 | 5.1:-6841090 | MS.gene54220:CDS |
| ATGAATTTGTTGAGAAAGAA+AGG | 0.353334 | 5.1:-6843002 | MS.gene54220:CDS |
| AGTTTGCAGGTGTGCTAGTT+TGG | 0.357606 | 5.1:-6842046 | MS.gene54220:intron |
| AACAGCTAACCAGCTCATTC+AGG | 0.360513 | 5.1:-6842675 | MS.gene54220:intron |
| TGATGGGGTGAATGACAAAT+TGG | 0.374986 | 5.1:-6842489 | MS.gene54220:CDS |
| ATTGTTGAATGTGTTGGATA+TGG | 0.376034 | 5.1:-6842414 | MS.gene54220:CDS |
| CGATGCTTTGTTCGACCATC+AGG | 0.387820 | 5.1:-6840569 | MS.gene54220:CDS |
| GGTGTACAGAGTTGGAATTC+TGG | 0.392919 | 5.1:-6844449 | MS.gene54220:CDS |
| GTGGATCAATTCTTAGGTTA+GGG | 0.396539 | 5.1:-6840464 | None:intergenic |
| AAAGAAAGGATTCCGTTTGA+TGG | 0.399610 | 5.1:-6842988 | MS.gene54220:CDS |
| AGCTTCCTGCGTGGATGCTT+CGG | 0.401056 | 5.1:+6840520 | None:intergenic |
| GGGCATAAAGGCGGCGGAGC+AGG | 0.422098 | 5.1:-6842707 | MS.gene54220:CDS |
| ATCTTTCATAGAGTGGTTAG+AGG | 0.424359 | 5.1:-6841680 | MS.gene54220:CDS |
| AAGGGAGTCACTTCAATTGT+TGG | 0.428191 | 5.1:-6842799 | MS.gene54220:CDS |
| CCCTAATAAATACAGCAAAC+AGG | 0.430995 | 5.1:+6841935 | None:intergenic |
| TTCTGCATTTGCTGTAACTA+CGG | 0.432455 | 5.1:+6841121 | None:intergenic |
| AGAAGTAACAAGCTTTCTTC+AGG | 0.435172 | 5.1:-6841655 | MS.gene54220:CDS |
| GCTCAAATTGATCTTGTTGA+TGG | 0.436292 | 5.1:-6841973 | MS.gene54220:CDS |
| GCATCGACCTTGATTGTACT+TGG | 0.441277 | 5.1:+6840586 | None:intergenic |
| AAAGCTGCTGAATTTGATAT+CGG | 0.451089 | 5.1:-6841748 | MS.gene54220:CDS |
| ACTGAGCGAAAAGTGTTTGA+TGG | 0.451678 | 5.1:-6842506 | MS.gene54220:CDS |
| TGCTAGAAATAAGGGCATAA+AGG | 0.454982 | 5.1:-6842719 | MS.gene54220:CDS |
| GGCTTTGGTTCTAAAGATGC+TGG | 0.460178 | 5.1:-6842305 | MS.gene54220:CDS |
| GTGGATGGAGCTAATGGTGT+TGG | 0.462996 | 5.1:-6842464 | MS.gene54220:CDS |
| GGGTATGTTGTCTCAAAATT+GGG | 0.463116 | 5.1:-6844323 | MS.gene54220:CDS |
| TTCAGGATCAGAAGCAGAAA+AGG | 0.466570 | 5.1:-6841550 | MS.gene54220:intron |
| TTGCTGTAACTACGGATGTT+CGG | 0.466748 | 5.1:+6841129 | None:intergenic |
| TCAAGCAAAGCTTCTCCACT+TGG | 0.467584 | 5.1:+6842925 | None:intergenic |
| GCATAAATTGTTGAATGTGT+TGG | 0.470235 | 5.1:-6842420 | MS.gene54220:CDS |
| TTAAAATCGCTGATCCGAAT+GGG | 0.475395 | 5.1:-6844345 | MS.gene54220:CDS |
| GTACAAACTGCATATGCAAA+TGG | 0.487440 | 5.1:-6841847 | MS.gene54220:CDS |
| CTCAAATTGATCTTGTTGAT+GGG | 0.490125 | 5.1:-6841972 | MS.gene54220:CDS |
| TCTCGCTTCTTGCTCCCTCA+AGG | 0.490159 | 5.1:-6844661 | MS.gene54220:intron |
| AAGAAAGGATTCCGTTTGAT+GGG | 0.493408 | 5.1:-6842987 | MS.gene54220:CDS |
| TGAAGAAGTTGTTGAGGAGA+AGG | 0.494333 | 5.1:+6844271 | None:intergenic |
| GTTTAGCCACACTGTTGGCT+AGG | 0.497608 | 5.1:+6840489 | None:intergenic |
| TGGAGCTGTTGCGTCCGACA+TGG | 0.502564 | 5.1:-6842779 | MS.gene54220:CDS |
| CTGACCTTGAGCTGCCTGCT+AGG | 0.510637 | 5.1:+6841387 | None:intergenic |
| ATGGTTCGTGCTAGAAATAA+GGG | 0.510648 | 5.1:-6842727 | MS.gene54220:CDS |
| TGACAACTCCACAACTACAT+TGG | 0.515072 | 5.1:-6842750 | MS.gene54220:CDS |
| GAAGTCAATTTAACTCCCAC+TGG | 0.516230 | 5.1:-6841790 | MS.gene54220:CDS |
| TTGGTTGTGGATGGAGCTAA+TGG | 0.526538 | 5.1:-6842470 | MS.gene54220:CDS |
| AACTGCGGCAAAGCACGTCT+TGG | 0.527184 | 5.1:-6841874 | MS.gene54220:CDS |
| TTGAAAACGCAATCGGTGAT+CGG | 0.527378 | 5.1:-6844412 | MS.gene54220:CDS |
| GTTAAAATCGCTGATCCGAA+TGG | 0.529348 | 5.1:-6844346 | MS.gene54220:CDS |
| GGAGCTGTTGCGTCCGACAT+GGG | 0.532863 | 5.1:-6842778 | MS.gene54220:CDS |
| TTTAGCCACACTGTTGGCTA+GGG | 0.533958 | 5.1:+6840490 | None:intergenic |
| ATGTAAATATTTCACTCCAG+TGG | 0.535599 | 5.1:+6841774 | None:intergenic |
| AAAATTGCGAAGAACCTTGA+GGG | 0.536356 | 5.1:+6844647 | None:intergenic |
| TTTCGGAATCTTTCATAGAG+TGG | 0.536692 | 5.1:-6841687 | MS.gene54220:CDS |
| TGCAGGTGTGCTAGTTTGGA+TGG | 0.536956 | 5.1:-6842042 | MS.gene54220:intron |
| GTCGGCCTGAACCCATCAAA+CGG | 0.537990 | 5.1:+6842976 | None:intergenic |
| TGTAAATATTTCACTCCAGT+GGG | 0.539907 | 5.1:+6841775 | None:intergenic |
| GTTTGGATGGAGATGCTGAC+CGG | 0.539986 | 5.1:-6842029 | MS.gene54220:CDS |
| AACTCCACAACTACATTGGA+TGG | 0.542214 | 5.1:-6842746 | MS.gene54220:CDS |
| AAGCTTTCTTCAGGATCCAA+AGG | 0.546144 | 5.1:-6841646 | MS.gene54220:intron |
| TTTGCAAGTTCGTCAGCGAA+CGG | 0.546146 | 5.1:+6844298 | None:intergenic |
| CTGAGCGAAAAGTGTTTGAT+GGG | 0.546436 | 5.1:-6842505 | MS.gene54220:CDS |
| TTGATGGCTTCCTGCAAACC+AGG | 0.550150 | 5.1:+6841080 | None:intergenic |
| ACTGTGGTTGTGAGTCCACC+TGG | 0.553423 | 5.1:-6841098 | MS.gene54220:CDS |
| GATGGAGCTAATGGTGTTGG+TGG | 0.553803 | 5.1:-6842461 | MS.gene54220:CDS |
| GTTGAATGTGTTGGATATGG+AGG | 0.556596 | 5.1:-6842411 | MS.gene54220:CDS |
| TTTATCTCGATCTACCTAGC+AGG | 0.558657 | 5.1:-6841401 | MS.gene54220:CDS |
| GACGAAGGTGTATTGAATGA+TGG | 0.561051 | 5.1:-6842371 | MS.gene54220:CDS |
| CCTAATAAATACAGCAAACA+GGG | 0.565024 | 5.1:+6841936 | None:intergenic |
| TCAAAGCATCTCCTACTGCT+TGG | 0.568654 | 5.1:+6841490 | None:intergenic |
| TCTACCTAGCAGGCAGCTCA+AGG | 0.570097 | 5.1:-6841391 | MS.gene54220:intron |
| GGTGAATGACAAATTGGTTG+TGG | 0.570163 | 5.1:-6842483 | MS.gene54220:CDS |
| AATGACAAATTGGTTGTGGA+TGG | 0.579476 | 5.1:-6842479 | MS.gene54220:CDS |
| CACAAGTTTAGCCACACTGT+TGG | 0.579773 | 5.1:+6840484 | None:intergenic |
| GAGATCGTTGAAAACGCAAT+CGG | 0.580026 | 5.1:-6844419 | MS.gene54220:CDS |
| TGCATCGATTCTGTCGTCGA+CGG | 0.582873 | 5.1:-6844470 | MS.gene54220:CDS |
| AAGGTGTCGTATGGTACGGC+GGG | 0.584569 | 5.1:-6844505 | MS.gene54220:CDS |
| ATTTGAGCATTGCTTTCAGG+TGG | 0.585796 | 5.1:+6841988 | None:intergenic |
| GGAAGTCATATTGAAGCACA+TGG | 0.585933 | 5.1:-6841451 | MS.gene54220:CDS |
| AAGTTGATCAACCAAGCAGT+AGG | 0.591729 | 5.1:-6841501 | MS.gene54220:CDS |
| TCGTCGACGGTGTACAGAGT+TGG | 0.592319 | 5.1:-6844457 | MS.gene54220:CDS |
| CGAACCATCCAATGTAGTTG+TGG | 0.594215 | 5.1:+6842742 | None:intergenic |
| CAACAGTGTGGCTAAACTTG+TGG | 0.595844 | 5.1:-6840483 | MS.gene54220:CDS |
| TCATATTGAAGCACATGGGA+TGG | 0.600856 | 5.1:-6841446 | MS.gene54220:CDS |
| CTCCCCAAAAGTATTTCAGT+CGG | 0.606500 | 5.1:+6842958 | None:intergenic |
| TGGGATGGTCAATACAGAGA+TGG | 0.607831 | 5.1:-6841431 | MS.gene54220:CDS |
| AGTGAAGGTGTCGTATGGTA+CGG | 0.614377 | 5.1:-6844509 | MS.gene54220:CDS |
| GTTCTAAAGATGCTGGCACA+AGG | 0.616918 | 5.1:-6842298 | MS.gene54220:intron |
| GCAGTAGGAGATGCTTTGAG+TGG | 0.617815 | 5.1:-6841486 | MS.gene54220:CDS |
| GAAGGTGTCGTATGGTACGG+CGG | 0.620088 | 5.1:-6844506 | MS.gene54220:CDS |
| AAATAAGGGCATAAAGGCGG+CGG | 0.621092 | 5.1:-6842713 | MS.gene54220:CDS |
| TTGTACTGACCTGAATGAGC+TGG | 0.622362 | 5.1:+6842666 | None:intergenic |
| TAAAATCGCTGATCCGAATG+GGG | 0.628884 | 5.1:-6844344 | MS.gene54220:CDS |
| ACAACATCCTCAGTTCCTGA+TGG | 0.640812 | 5.1:+6840554 | None:intergenic |
| GGTATCTGCAGCTTCCTGCG+TGG | 0.645035 | 5.1:+6840511 | None:intergenic |
| TACAGCAAATGCAGAAACTG+TGG | 0.647747 | 5.1:-6841114 | MS.gene54220:CDS |
| CCGAAAATAGGATAGTTCCA+TGG | 0.647835 | 5.1:+6841704 | None:intergenic |
| TGTTCGACCATCAGGAACTG+AGG | 0.653263 | 5.1:-6840561 | MS.gene54220:CDS |
| GTACAGAGTTGGAATTCTGG+CGG | 0.655280 | 5.1:-6844446 | MS.gene54220:CDS |
| TCAAATTGATCTTGTTGATG+GGG | 0.656178 | 5.1:-6841971 | MS.gene54220:CDS |
| GGGAGAGACACAAGGCCAAG+TGG | 0.658164 | 5.1:-6842940 | MS.gene54220:CDS |
| TAGAAATAAGGGCATAAAGG+CGG | 0.658465 | 5.1:-6842716 | MS.gene54220:CDS |
| GTAGGAGTGAAGGTGTCGTA+TGG | 0.660094 | 5.1:-6844514 | MS.gene54220:intron |
| AGTTGTCAAAATGCCCATGT+CGG | 0.663393 | 5.1:+6842765 | None:intergenic |
| ATGGCTTCCTGCAAACCAGG+TGG | 0.669699 | 5.1:+6841083 | None:intergenic |
| GGTGTATTGAATGATGGAGT+CGG | 0.675083 | 5.1:-6842365 | MS.gene54220:CDS |
| CAAACCTGAAGAAGTTGTTG+AGG | 0.675857 | 5.1:+6844265 | None:intergenic |
| AAAATCGCTGATCCGAATGG+GGG | 0.681857 | 5.1:-6844343 | MS.gene54220:CDS |
| GAAGTCATATTGAAGCACAT+GGG | 0.697397 | 5.1:-6841450 | MS.gene54220:CDS |
| CGAAATAGCAGTGATGACGA+AGG | 0.699562 | 5.1:-6842386 | MS.gene54220:CDS |
| TGATTATGTGCAGAAAGAGA+AGG | 0.707330 | 5.1:-6842339 | MS.gene54220:CDS |
| ATATGCCGAAGCATCCACGC+AGG | 0.714226 | 5.1:-6840525 | MS.gene54220:CDS |
| TCTTTAGAACCAAAGCCGCG+TGG | 0.716832 | 5.1:+6842311 | None:intergenic |
| AAAGAGAAGGTTGCTCCACG+CGG | 0.735177 | 5.1:-6842326 | MS.gene54220:CDS |
| TGAGCGAAAAGTGTTTGATG+GGG | 0.765554 | 5.1:-6842504 | MS.gene54220:CDS |
| AGATACCCTAGCCAACAGTG+TGG | 0.790848 | 5.1:-6840495 | MS.gene54220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATTAATTA+AGG | + | chr5.1:6841923-6841942 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTTTTGTGT+AGG | - | chr5.1:6840634-6840653 | MS.gene54220:intron | 10.0% |
| !! | AAATAATTGGATAAATATGA+AGG | - | chr5.1:6842348-6842367 | MS.gene54220:CDS | 15.0% |
| !! | AATAATTGGATAAATATGAA+GGG | - | chr5.1:6842349-6842368 | MS.gene54220:CDS | 15.0% |
| !! | AGTTTAATGTTCTAATTAAA+AGG | + | chr5.1:6844498-6844517 | None:intergenic | 15.0% |
| !! | CATAATAAAATTTCTGATAA+TGG | - | chr5.1:6840796-6840815 | MS.gene54220:intron | 15.0% |
| !! | TACTAATTACCTTAAAAATT+TGG | - | chr5.1:6843348-6843367 | MS.gene54220:intron | 15.0% |
| !! | TATATAACAATAACAAAAGT+AGG | + | chr5.1:6843909-6843928 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTGTTTGTTTC+AGG | - | chr5.1:6843599-6843618 | MS.gene54220:intron | 15.0% |
| !!! | GATTTTTTAAAATTTTACGA+GGG | - | chr5.1:6844437-6844456 | MS.gene54220:CDS | 15.0% |
| !!! | TGATTTTTTAAAATTTTACG+AGG | - | chr5.1:6844436-6844455 | MS.gene54220:CDS | 15.0% |
| !!! | TTTTGTTATTACTGTTAATA+CGG | - | chr5.1:6840601-6840620 | MS.gene54220:intron | 15.0% |
| !! | AAAATGAATATTTACATCTC+AGG | - | chr5.1:6842916-6842935 | MS.gene54220:CDS | 20.0% |
| !! | AAAGAAGATATAAAAAACTG+CGG | - | chr5.1:6843277-6843296 | MS.gene54220:intron | 20.0% |
| !! | ATTCAATTAACAAACATTGA+AGG | + | chr5.1:6844389-6844408 | None:intergenic | 20.0% |
| !! | GTATTAAAGTCGTAAATAAT+TGG | - | chr5.1:6842335-6842354 | MS.gene54220:CDS | 20.0% |
| !! | TATGTTAGTTCATTATTGAT+TGG | - | chr5.1:6844320-6844339 | MS.gene54220:CDS | 20.0% |
| !! | TTATCTTACTATATCATTTC+TGG | - | chr5.1:6843808-6843827 | MS.gene54220:intron | 20.0% |
| !! | TTGAACTTAACTATCATTAT+CGG | - | chr5.1:6841288-6841307 | MS.gene54220:intron | 20.0% |
| !!! | ATTCTTTGATTCTAAAAGAT+TGG | - | chr5.1:6844294-6844313 | MS.gene54220:CDS | 20.0% |
| !!! | ATTTAAAATTTTGTACCATG+AGG | - | chr5.1:6841389-6841408 | MS.gene54220:intron | 20.0% |
| !!! | ATTTATTGTGTTACTACTAA+TGG | - | chr5.1:6843083-6843102 | MS.gene54220:intron | 20.0% |
| !!! | CATGGTACAAAATTTTAAAT+TGG | + | chr5.1:6841389-6841408 | None:intergenic | 20.0% |
| !!! | GCAAAAAAAGTACTTATATT+TGG | - | chr5.1:6841835-6841854 | MS.gene54220:CDS | 20.0% |
| !!! | GTACAAAATTTTAAATTGGT+CGG | + | chr5.1:6841385-6841404 | None:intergenic | 20.0% |
| !!! | GTTGAGATTATCTTTTTTAA+TGG | - | chr5.1:6842961-6842980 | MS.gene54220:CDS | 20.0% |
| ! | AATCCAATCCCTTATAAAAA+GGG | - | chr5.1:6841451-6841470 | MS.gene54220:CDS | 25.0% |
| ! | ACAATGAATGTTATTACATG+CGG | - | chr5.1:6842127-6842146 | MS.gene54220:intron | 25.0% |
| ! | ATCACACTAATTAAGAAACT+TGG | + | chr5.1:6842058-6842077 | None:intergenic | 25.0% |
| ! | CTTGCTTAATGTTACTATAT+TGG | - | chr5.1:6843056-6843075 | MS.gene54220:intron | 25.0% |
| ! | GAAAATTTCAACCAATTTGA+AGG | + | chr5.1:6841330-6841349 | None:intergenic | 25.0% |
| ! | TAACAACAACAAAAACCATT+TGG | + | chr5.1:6841587-6841606 | None:intergenic | 25.0% |
| ! | TAATCCAATCCCTTATAAAA+AGG | - | chr5.1:6841450-6841469 | MS.gene54220:CDS | 25.0% |
| ! | TACAAATCATGAGATAGAAA+TGG | + | chr5.1:6841167-6841186 | None:intergenic | 25.0% |
| ! | TAGAAGCTGAATATAGTTTA+TGG | + | chr5.1:6842289-6842308 | None:intergenic | 25.0% |
| ! | TTAACAAACATTGAAGGAAA+AGG | + | chr5.1:6844383-6844402 | None:intergenic | 25.0% |
| ! | TTGTACTTTGCCTATTTAAA+AGG | - | chr5.1:6841733-6841752 | MS.gene54220:CDS | 25.0% |
| !! | AATTATGCAAGATTTGTTTG+AGG | - | chr5.1:6844251-6844270 | MS.gene54220:intron | 25.0% |
| !! | TAAATTTGCATGATTCCTTT+TGG | - | chr5.1:6841607-6841626 | MS.gene54220:intron | 25.0% |
| !! | TATTATTTAGTACTGAGTTC+TGG | - | chr5.1:6841686-6841705 | MS.gene54220:CDS | 25.0% |
| !! | TCAATTTGAAATTGTGTGAT+AGG | - | chr5.1:6840946-6840965 | MS.gene54220:intron | 25.0% |
| !! | TGATATCGGTATATATTTTG+AGG | - | chr5.1:6843432-6843451 | MS.gene54220:intron | 25.0% |
| !! | TTGATAAATCTAGAGTGTTT+GGG | + | chr5.1:6841099-6841118 | None:intergenic | 25.0% |
| !!! | AATTAAAAGGCATTAGTAGA+TGG | + | chr5.1:6844485-6844504 | None:intergenic | 25.0% |
| !!! | ATGAATTTGTTGAGAAAGAA+AGG | - | chr5.1:6842164-6842183 | MS.gene54220:intron | 25.0% |
| !!! | ATTAAAAGGCATTAGTAGAT+GGG | + | chr5.1:6844484-6844503 | None:intergenic | 25.0% |
| !!! | ATTTGATTTGCTAGCATATA+TGG | + | chr5.1:6841264-6841283 | None:intergenic | 25.0% |
| !!! | TGTCACAAAGATAACTTTTT+TGG | + | chr5.1:6841055-6841074 | None:intergenic | 25.0% |
| !!! | TTAAACTGTTCTGAAATCAA+CGG | - | chr5.1:6843975-6843994 | MS.gene54220:intron | 25.0% |
| AAACTTGTGGATCAATTCTT+AGG | - | chr5.1:6844696-6844715 | MS.gene54220:CDS | 30.0% | |
| AAAGCTGCTGAATTTGATAT+CGG | - | chr5.1:6843418-6843437 | MS.gene54220:intron | 30.0% | |
| ACCTAATACAATGCATAACA+CGG | + | chr5.1:6841358-6841377 | None:intergenic | 30.0% | |
| ACTCTAGATTTATCAACCAT+TGG | - | chr5.1:6841103-6841122 | MS.gene54220:CDS | 30.0% | |
| AGGTCTTCAAAAAAAAACGA+AGG | + | chr5.1:6841216-6841235 | None:intergenic | 30.0% | |
| AGTATGTTTGAATCTCCAAA+TGG | - | chr5.1:6841569-6841588 | MS.gene54220:intron | 30.0% | |
| AGTGGTTCCATATTATATCA+CGG | + | chr5.1:6844157-6844176 | None:intergenic | 30.0% | |
| ATGTAAATATTTCACTCCAG+TGG | + | chr5.1:6843395-6843414 | None:intergenic | 30.0% | |
| ATTGTTGAATGTGTTGGATA+TGG | - | chr5.1:6842752-6842771 | MS.gene54220:CDS | 30.0% | |
| CAAATCTTGCATAATTGATG+TGG | + | chr5.1:6844247-6844266 | None:intergenic | 30.0% | |
| CATCATAACAGAATTAGGAA+AGG | + | chr5.1:6842527-6842546 | None:intergenic | 30.0% | |
| CATTCACATAATGATCCTTA+AGG | + | chr5.1:6842612-6842631 | None:intergenic | 30.0% | |
| CCTAATAAATACAGCAAACA+GGG | + | chr5.1:6843233-6843252 | None:intergenic | 30.0% | |
| CTAACAGTTTAAAAAACCAG+AGG | + | chr5.1:6844003-6844022 | None:intergenic | 30.0% | |
| CTATGAAAGATTCCGAAAAT+AGG | + | chr5.1:6843477-6843496 | None:intergenic | 30.0% | |
| CTATGCATCATAACAGAATT+AGG | + | chr5.1:6842532-6842551 | None:intergenic | 30.0% | |
| CTCAAATTGATCTTGTTGAT+GGG | - | chr5.1:6843194-6843213 | MS.gene54220:intron | 30.0% | |
| CTTAAGGATCATTATGTGAA+TGG | - | chr5.1:6842610-6842629 | MS.gene54220:intron | 30.0% | |
| GCATAAATTGTTGAATGTGT+TGG | - | chr5.1:6842746-6842765 | MS.gene54220:CDS | 30.0% | |
| GGATATTCAAAGTTAACCAA+TGG | + | chr5.1:6841122-6841141 | None:intergenic | 30.0% | |
| GGTCTTCAAAAAAAAACGAA+GGG | + | chr5.1:6841215-6841234 | None:intergenic | 30.0% | |
| GTACTGAAAAATAAACAAGC+CGG | + | chr5.1:6843159-6843178 | None:intergenic | 30.0% | |
| GTCTTCAAAAAAAAACGAAG+GGG | + | chr5.1:6841214-6841233 | None:intergenic | 30.0% | |
| TATATTGCAGGTAATTTGAC+AGG | - | chr5.1:6843861-6843880 | MS.gene54220:intron | 30.0% | |
| TCAAATTGATCTTGTTGATG+GGG | - | chr5.1:6843195-6843214 | MS.gene54220:intron | 30.0% | |
| TCTCAACTGTCATAACATAA+TGG | + | chr5.1:6842948-6842967 | None:intergenic | 30.0% | |
| TGTAAATATTTCACTCCAGT+GGG | + | chr5.1:6843394-6843413 | None:intergenic | 30.0% | |
| TTGAAATTGTGTGATAGGTT+AGG | - | chr5.1:6840951-6840970 | MS.gene54220:intron | 30.0% | |
| TTTGTTGCCGTGATATAATA+TGG | - | chr5.1:6844147-6844166 | MS.gene54220:intron | 30.0% | |
| ! | AAATTTTGTACCATGAGGTT+AGG | - | chr5.1:6841394-6841413 | MS.gene54220:CDS | 30.0% |
| ! | ACTTCACTTCCCTTTTTATA+AGG | + | chr5.1:6841463-6841482 | None:intergenic | 30.0% |
| ! | CATTAACGTGCCTTTTAAAT+AGG | + | chr5.1:6841746-6841765 | None:intergenic | 30.0% |
| ! | CTTCACTTCCCTTTTTATAA+GGG | + | chr5.1:6841462-6841481 | None:intergenic | 30.0% |
| ! | CTTCGAGATCCAAATTTTTA+AGG | + | chr5.1:6843360-6843379 | None:intergenic | 30.0% |
| ! | GACATACTTCGTCTTTTATT+TGG | - | chr5.1:6841789-6841808 | MS.gene54220:CDS | 30.0% |
| ! | GTTGATAAATCTAGAGTGTT+TGG | + | chr5.1:6841100-6841119 | None:intergenic | 30.0% |
| ! | TAACGTCTCTTTTATTCTCA+TGG | - | chr5.1:6841960-6841979 | MS.gene54220:CDS | 30.0% |
| ! | TTGTTTCTTTCTGTGATTGA+TGG | - | chr5.1:6842565-6842584 | MS.gene54220:intron | 30.0% |
| !! | CCTGTTTGCTGTATTTATTA+GGG | - | chr5.1:6843231-6843250 | MS.gene54220:intron | 30.0% |
| !!! | CTCTGGTTTTTTAAACTGTT+AGG | - | chr5.1:6844001-6844020 | MS.gene54220:intron | 30.0% |
| !!! | GGTATATATTTTGAGGCAAA+TGG | - | chr5.1:6843439-6843458 | MS.gene54220:intron | 30.0% |
| !!! | TTTTTTTTGTGTAGGAGTGA+AGG | - | chr5.1:6840642-6840661 | MS.gene54220:intron | 30.0% |
| AAAAATTGCGAAGAACCTTG+AGG | + | chr5.1:6840523-6840542 | None:intergenic | 35.0% | |
| AAAATTGCGAAGAACCTTGA+GGG | + | chr5.1:6840522-6840541 | None:intergenic | 35.0% | |
| AAAGAAAGGATTCCGTTTGA+TGG | - | chr5.1:6842178-6842197 | MS.gene54220:intron | 35.0% | |
| AACCAATTTGAAGGACTTGT+TGG | + | chr5.1:6841321-6841340 | None:intergenic | 35.0% | |
| AAGAAAGGATTCCGTTTGAT+GGG | - | chr5.1:6842179-6842198 | MS.gene54220:intron | 35.0% | |
| AATGACAAATTGGTTGTGGA+TGG | - | chr5.1:6842687-6842706 | MS.gene54220:CDS | 35.0% | |
| ACCACAAGAAGTTATATTGC+AGG | - | chr5.1:6843849-6843868 | MS.gene54220:intron | 35.0% | |
| ACCGTGTTATGCATTGTATT+AGG | - | chr5.1:6841354-6841373 | MS.gene54220:intron | 35.0% | |
| ACCTGCAATATAACTTCTTG+TGG | + | chr5.1:6843853-6843872 | None:intergenic | 35.0% | |
| ACGTCTACTAAATCAAAGGT+AGG | + | chr5.1:6843034-6843053 | None:intergenic | 35.0% | |
| AGAAGTAACAAGCTTTCTTC+AGG | - | chr5.1:6843511-6843530 | MS.gene54220:intron | 35.0% | |
| AGACACGTCTACTAAATCAA+AGG | + | chr5.1:6843038-6843057 | None:intergenic | 35.0% | |
| AGGTTAGGCCCATTATTAAA+GGG | - | chr5.1:6841409-6841428 | MS.gene54220:CDS | 35.0% | |
| ATCTTTCATAGAGTGGTTAG+AGG | - | chr5.1:6843486-6843505 | MS.gene54220:intron | 35.0% | |
| ATGATTTAACCAATCCACAC+TGG | - | chr5.1:6842998-6843017 | MS.gene54220:CDS | 35.0% | |
| ATGGTTCGTGCTAGAAATAA+GGG | - | chr5.1:6842439-6842458 | MS.gene54220:CDS | 35.0% | |
| ATGTGAGGTGAAATTCCAAA+AGG | + | chr5.1:6841625-6841644 | None:intergenic | 35.0% | |
| CATACAAGTTTCTGCATTGA+TGG | + | chr5.1:6844105-6844124 | None:intergenic | 35.0% | |
| CATCATTGAACACATCCTTA+AGG | - | chr5.1:6842594-6842613 | MS.gene54220:intron | 35.0% | |
| CCCTAATAAATACAGCAAAC+AGG | + | chr5.1:6843234-6843253 | None:intergenic | 35.0% | |
| CGGCAACAAATAAAAAGAGA+AGG | + | chr5.1:6844137-6844156 | None:intergenic | 35.0% | |
| CGTCTACTAAATCAAAGGTA+GGG | + | chr5.1:6843033-6843052 | None:intergenic | 35.0% | |
| CTTAAGGATGTGTTCAATGA+TGG | + | chr5.1:6842596-6842615 | None:intergenic | 35.0% | |
| GAAGCCATTGAATAAACCTT+TGG | + | chr5.1:6843539-6843558 | None:intergenic | 35.0% | |
| GAAGTCATATTGAAGCACAT+GGG | - | chr5.1:6843716-6843735 | MS.gene54220:intron | 35.0% | |
| GATCATTATGTGAATGGATC+AGG | - | chr5.1:6842616-6842635 | MS.gene54220:intron | 35.0% | |
| GCTCAAATTGATCTTGTTGA+TGG | - | chr5.1:6843193-6843212 | MS.gene54220:intron | 35.0% | |
| GGATCCAAAGGTTTATTCAA+TGG | - | chr5.1:6843532-6843551 | MS.gene54220:intron | 35.0% | |
| GGGTATGTTGTCTCAAAATT+GGG | - | chr5.1:6840843-6840862 | MS.gene54220:intron | 35.0% | |
| GTAATTTGACAGGTAGTCAA+GGG | - | chr5.1:6843871-6843890 | MS.gene54220:intron | 35.0% | |
| GTACAAACTGCATATGCAAA+TGG | - | chr5.1:6843319-6843338 | MS.gene54220:intron | 35.0% | |
| GTATCCTCCCCTTTAATAAT+GGG | + | chr5.1:6841420-6841439 | None:intergenic | 35.0% | |
| GTCTACTAAATCAAAGGTAG+GGG | + | chr5.1:6843032-6843051 | None:intergenic | 35.0% | |
| GTTGTACTAATATTGCAGCT+TGG | - | chr5.1:6844533-6844552 | MS.gene54220:intron | 35.0% | |
| TAAGCTGATACAATGCTAGA+TGG | + | chr5.1:6840987-6841006 | None:intergenic | 35.0% | |
| TCATGAGATAGAAATGGTCA+AGG | + | chr5.1:6841161-6841180 | None:intergenic | 35.0% | |
| TGATTATGTGCAGAAAGAGA+AGG | - | chr5.1:6842827-6842846 | MS.gene54220:intron | 35.0% | |
| TGCTTATAATCGAGATCGAA+AGG | - | chr5.1:6842096-6842115 | MS.gene54220:intron | 35.0% | |
| TGTATCCTCCCCTTTAATAA+TGG | + | chr5.1:6841421-6841440 | None:intergenic | 35.0% | |
| TGTGTGATAGGTTAGGTTTA+TGG | - | chr5.1:6840958-6840977 | MS.gene54220:intron | 35.0% | |
| TTAAAATCGCTGATCCGAAT+GGG | - | chr5.1:6840821-6840840 | MS.gene54220:intron | 35.0% | |
| TTACTACTAATGGAGCTAGT+TGG | - | chr5.1:6843093-6843112 | MS.gene54220:intron | 35.0% | |
| TTCAAAAAAAAACGAAGGGG+TGG | + | chr5.1:6841211-6841230 | None:intergenic | 35.0% | |
| TTTCGGAATCTTTCATAGAG+TGG | - | chr5.1:6843479-6843498 | MS.gene54220:intron | 35.0% | |
| ! | AAAGGCACGTTAATGAAGTA+AGG | - | chr5.1:6841751-6841770 | MS.gene54220:CDS | 35.0% |
| ! | CCATGGAACTATCCTATTTT+CGG | - | chr5.1:6843462-6843481 | MS.gene54220:intron | 35.0% |
| ! | CTTCCCTTTTTATAAGGGAT+TGG | + | chr5.1:6841457-6841476 | None:intergenic | 35.0% |
| ! | TAGAAATAAGGGCATAAAGG+CGG | - | chr5.1:6842450-6842469 | MS.gene54220:CDS | 35.0% |
| ! | TCAACAACTTCTTCAGGTTT+GGG | - | chr5.1:6840903-6840922 | MS.gene54220:intron | 35.0% |
| ! | TCAATTTGAGCATTGCTTTC+AGG | + | chr5.1:6843184-6843203 | None:intergenic | 35.0% |
| ! | TGCTAGAAATAAGGGCATAA+AGG | - | chr5.1:6842447-6842466 | MS.gene54220:CDS | 35.0% |
| ! | TTTTCAGCCAAGTACAATCA+AGG | - | chr5.1:6844573-6844592 | MS.gene54220:intron | 35.0% |
| !! | AAAGGCTGCTTTGAGATTAT+TGG | - | chr5.1:6843634-6843653 | MS.gene54220:intron | 35.0% |
| !! | CCCTGTTTGCTGTATTTATT+AGG | - | chr5.1:6843230-6843249 | MS.gene54220:intron | 35.0% |
| !! | TTCTGCATTTGCTGTAACTA+CGG | + | chr5.1:6844048-6844067 | None:intergenic | 35.0% |
| AACTCCACAACTACATTGGA+TGG | - | chr5.1:6842420-6842439 | MS.gene54220:CDS | 40.0% | |
| AAGCTTTCTTCAGGATCCAA+AGG | - | chr5.1:6843520-6843539 | MS.gene54220:intron | 40.0% | |
| AAGGGAGTCACTTCAATTGT+TGG | - | chr5.1:6842367-6842386 | MS.gene54220:CDS | 40.0% | |
| AGCCAACAAGTCCTTCAAAT+TGG | - | chr5.1:6841316-6841335 | MS.gene54220:intron | 40.0% | |
| AGGAAGCAACAACAGTTAGA+CGG | + | chr5.1:6844363-6844382 | None:intergenic | 40.0% | |
| AGGGAAGTGAAGTAACAGAA+AGG | - | chr5.1:6841470-6841489 | MS.gene54220:CDS | 40.0% | |
| AGTTAGTGCGGCTAAGTATT+GGG | - | chr5.1:6841518-6841537 | MS.gene54220:CDS | 40.0% | |
| AGTTGTCAAAATGCCCATGT+CGG | + | chr5.1:6842404-6842423 | None:intergenic | 40.0% | |
| CAAACCTGAAGAAGTTGTTG+AGG | + | chr5.1:6840904-6840923 | None:intergenic | 40.0% | |
| CATTTCTACCCACCAATTGA+AGG | - | chr5.1:6844200-6844219 | MS.gene54220:intron | 40.0% | |
| CCGAAAATAGGATAGTTCCA+TGG | + | chr5.1:6843465-6843484 | None:intergenic | 40.0% | |
| GAAGTCAATTTAACTCCCAC+TGG | - | chr5.1:6843376-6843395 | MS.gene54220:intron | 40.0% | |
| GAGATCGTTGAAAACGCAAT+CGG | - | chr5.1:6840747-6840766 | MS.gene54220:intron | 40.0% | |
| GAGGTTAGGCCCATTATTAA+AGG | - | chr5.1:6841408-6841427 | MS.gene54220:CDS | 40.0% | |
| GATAGTTATCCAGTGTGGAT+TGG | + | chr5.1:6843010-6843029 | None:intergenic | 40.0% | |
| GATGGTTCGTGCTAGAAATA+AGG | - | chr5.1:6842438-6842457 | MS.gene54220:CDS | 40.0% | |
| GCACGTTAATGAAGTAAGGA+GGG | - | chr5.1:6841755-6841774 | MS.gene54220:CDS | 40.0% | |
| GGAAGTCATATTGAAGCACA+TGG | - | chr5.1:6843715-6843734 | MS.gene54220:intron | 40.0% | |
| GGAAGTGAAGTAACAGAAAG+GGG | - | chr5.1:6841472-6841491 | MS.gene54220:CDS | 40.0% | |
| GGAGATTCAAACATACTGAG+TGG | + | chr5.1:6841566-6841585 | None:intergenic | 40.0% | |
| GGGAAGTGAAGTAACAGAAA+GGG | - | chr5.1:6841471-6841490 | MS.gene54220:CDS | 40.0% | |
| GGGGTATGTTGTCTCAAAAT+TGG | - | chr5.1:6840842-6840861 | MS.gene54220:intron | 40.0% | |
| GGTAATTTGACAGGTAGTCA+AGG | - | chr5.1:6843870-6843889 | MS.gene54220:intron | 40.0% | |
| GGTGAATGACAAATTGGTTG+TGG | - | chr5.1:6842683-6842702 | MS.gene54220:CDS | 40.0% | |
| GGTTAGGCCCATTATTAAAG+GGG | - | chr5.1:6841410-6841429 | MS.gene54220:CDS | 40.0% | |
| GTGGAAGGTGAGAAATAAGA+AGG | + | chr5.1:6841236-6841255 | None:intergenic | 40.0% | |
| GTTAAAATCGCTGATCCGAA+TGG | - | chr5.1:6840820-6840839 | MS.gene54220:intron | 40.0% | |
| GTTGAATGTGTTGGATATGG+AGG | - | chr5.1:6842755-6842774 | MS.gene54220:CDS | 40.0% | |
| TAAAATCGCTGATCCGAATG+GGG | - | chr5.1:6840822-6840841 | MS.gene54220:intron | 40.0% | |
| TACAGCAAATGCAGAAACTG+TGG | - | chr5.1:6844052-6844071 | MS.gene54220:intron | 40.0% | |
| TCATATTGAAGCACATGGGA+TGG | - | chr5.1:6843720-6843739 | MS.gene54220:intron | 40.0% | |
| TGAAGAAGTTGTTGAGGAGA+AGG | + | chr5.1:6840898-6840917 | None:intergenic | 40.0% | |
| TGAAGCTGCTAGACAAGTAT+GGG | - | chr5.1:6842261-6842280 | MS.gene54220:intron | 40.0% | |
| TGAATGGATCAGGTGCTTAA+TGG | - | chr5.1:6842626-6842645 | MS.gene54220:intron | 40.0% | |
| TGACAACTCCACAACTACAT+TGG | - | chr5.1:6842416-6842435 | MS.gene54220:CDS | 40.0% | |
| TGATGGGGTGAATGACAAAT+TGG | - | chr5.1:6842677-6842696 | MS.gene54220:CDS | 40.0% | |
| TTCAGGATCAGAAGCAGAAA+AGG | - | chr5.1:6843616-6843635 | MS.gene54220:intron | 40.0% | |
| TTCTCCTCAACAACTTCTTC+AGG | - | chr5.1:6840897-6840916 | MS.gene54220:intron | 40.0% | |
| TTGAAAACGCAATCGGTGAT+CGG | - | chr5.1:6840754-6840773 | MS.gene54220:intron | 40.0% | |
| TTGAAGCTGCTAGACAAGTA+TGG | - | chr5.1:6842260-6842279 | MS.gene54220:intron | 40.0% | |
| TTGCTGTAACTACGGATGTT+CGG | + | chr5.1:6844040-6844059 | None:intergenic | 40.0% | |
| TTTATCTCGATCTACCTAGC+AGG | - | chr5.1:6843765-6843784 | MS.gene54220:intron | 40.0% | |
| ! | AAGTTGATCAACCAAGCAGT+AGG | - | chr5.1:6843665-6843684 | MS.gene54220:intron | 40.0% |
| ! | AGGCCGACTGAAATACTTTT+GGG | - | chr5.1:6842205-6842224 | MS.gene54220:intron | 40.0% |
| ! | ATTTGAGCATTGCTTTCAGG+TGG | + | chr5.1:6843181-6843200 | None:intergenic | 40.0% |
| ! | CTCAACAACTTCTTCAGGTT+TGG | - | chr5.1:6840902-6840921 | MS.gene54220:intron | 40.0% |
| ! | GACGAAGGTGTATTGAATGA+TGG | - | chr5.1:6842795-6842814 | MS.gene54220:CDS | 40.0% |
| ! | GCATATATGGATTACGTGGA+AGG | + | chr5.1:6841251-6841270 | None:intergenic | 40.0% |
| ! | GCTAGCATATATGGATTACG+TGG | + | chr5.1:6841255-6841274 | None:intergenic | 40.0% |
| ! | GGTGTATTGAATGATGGAGT+CGG | - | chr5.1:6842801-6842820 | MS.gene54220:intron | 40.0% |
| ! | TCAAACACTTTTCGCTCAGT+CGG | + | chr5.1:6842660-6842679 | None:intergenic | 40.0% |
| !! | AACCACTCATTTTGACCTCA+AGG | - | chr5.1:6844170-6844189 | MS.gene54220:intron | 40.0% |
| !! | AATTTGAAGGACTTGTTGGC+TGG | + | chr5.1:6841317-6841336 | None:intergenic | 40.0% |
| !! | ACTGAGCGAAAAGTGTTTGA+TGG | - | chr5.1:6842660-6842679 | MS.gene54220:intron | 40.0% |
| !! | ATTTGAAGGACTTGTTGGCT+GGG | + | chr5.1:6841316-6841335 | None:intergenic | 40.0% |
| !! | CTCCCCAAAAGTATTTCAGT+CGG | + | chr5.1:6842211-6842230 | None:intergenic | 40.0% |
| !! | CTGAGCGAAAAGTGTTTGAT+GGG | - | chr5.1:6842661-6842680 | MS.gene54220:intron | 40.0% |
| !! | TAATAATGGGCCTAACCTCA+TGG | + | chr5.1:6841407-6841426 | None:intergenic | 40.0% |
| !! | TGAGCGAAAAGTGTTTGATG+GGG | - | chr5.1:6842662-6842681 | MS.gene54220:intron | 40.0% |
| !!! | TATTTTGAGGCAAATGGCCA+TGG | - | chr5.1:6843445-6843464 | MS.gene54220:intron | 40.0% |
| AAAATCGCTGATCCGAATGG+GGG | - | chr5.1:6840823-6840842 | MS.gene54220:intron | 45.0% | |
| AACAGCTAACCAGCTCATTC+AGG | - | chr5.1:6842491-6842510 | MS.gene54220:CDS | 45.0% | |
| AATTGAAGGAGGGAGACTAG+TGG | - | chr5.1:6844214-6844233 | MS.gene54220:intron | 45.0% | |
| ACAACATCCTCAGTTCCTGA+TGG | + | chr5.1:6844615-6844634 | None:intergenic | 45.0% | |
| AGTGAAGTAACAGAAAGGGG+AGG | - | chr5.1:6841475-6841494 | MS.gene54220:CDS | 45.0% | |
| AGTGTGAAGTGGAGTTAGTG+CGG | - | chr5.1:6841506-6841525 | MS.gene54220:CDS | 45.0% | |
| AGTTTGCAGGTGTGCTAGTT+TGG | - | chr5.1:6843120-6843139 | MS.gene54220:intron | 45.0% | |
| CAACAGTGTGGCTAAACTTG+TGG | - | chr5.1:6844683-6844702 | MS.gene54220:CDS | 45.0% | |
| CACAAGTTTAGCCACACTGT+TGG | + | chr5.1:6844685-6844704 | None:intergenic | 45.0% | |
| CGAACCATCCAATGTAGTTG+TGG | + | chr5.1:6842427-6842446 | None:intergenic | 45.0% | |
| GAGTTAGTGCGGCTAAGTAT+TGG | - | chr5.1:6841517-6841536 | MS.gene54220:CDS | 45.0% | |
| GGCACGTTAATGAAGTAAGG+AGG | - | chr5.1:6841754-6841773 | MS.gene54220:CDS | 45.0% | |
| GGTGTACAGAGTTGGAATTC+TGG | - | chr5.1:6840717-6840736 | MS.gene54220:intron | 45.0% | |
| GTACAGAGTTGGAATTCTGG+CGG | - | chr5.1:6840720-6840739 | MS.gene54220:intron | 45.0% | |
| GTGAAGTAACAGAAAGGGGA+GGG | - | chr5.1:6841476-6841495 | MS.gene54220:CDS | 45.0% | |
| TACAATGCATAACACGGTGC+TGG | + | chr5.1:6841352-6841371 | None:intergenic | 45.0% | |
| TAGGCCCATTATTAAAGGGG+AGG | - | chr5.1:6841413-6841432 | MS.gene54220:CDS | 45.0% | |
| TAGGGGATAGTTATCCAGTG+TGG | + | chr5.1:6843015-6843034 | None:intergenic | 45.0% | |
| TCAAGCAAAGCTTCTCCACT+TGG | + | chr5.1:6842244-6842263 | None:intergenic | 45.0% | |
| TCTACCCACCAATTGAAGGA+GGG | - | chr5.1:6844204-6844223 | MS.gene54220:intron | 45.0% | |
| TGAGACAACATACCCCCATT+CGG | + | chr5.1:6840838-6840857 | None:intergenic | 45.0% | |
| TGGGATGGTCAATACAGAGA+TGG | - | chr5.1:6843735-6843754 | MS.gene54220:intron | 45.0% | |
| TTCTACCCACCAATTGAAGG+AGG | - | chr5.1:6844203-6844222 | MS.gene54220:intron | 45.0% | |
| TTGGTTGTGGATGGAGCTAA+TGG | - | chr5.1:6842696-6842715 | MS.gene54220:CDS | 45.0% | |
| TTTGCAAGTTCGTCAGCGAA+CGG | + | chr5.1:6840871-6840890 | None:intergenic | 45.0% | |
| ! | AAATAAGGGCATAAAGGCGG+CGG | - | chr5.1:6842453-6842472 | MS.gene54220:CDS | 45.0% |
| ! | ACTAGTCTCCCTCCTTCAAT+TGG | + | chr5.1:6844215-6844234 | None:intergenic | 45.0% |
| ! | CAAACACTTTTCGCTCAGTC+GGG | + | chr5.1:6842659-6842678 | None:intergenic | 45.0% |
| ! | CAGGCCGACTGAAATACTTT+TGG | - | chr5.1:6842204-6842223 | MS.gene54220:intron | 45.0% |
| ! | CGAAATAGCAGTGATGACGA+AGG | - | chr5.1:6842780-6842799 | MS.gene54220:CDS | 45.0% |
| ! | GCATCGACCTTGATTGTACT+TGG | + | chr5.1:6844583-6844602 | None:intergenic | 45.0% |
| ! | GCTTGGTCTCTTGTCTTTTC+TGG | - | chr5.1:6844550-6844569 | MS.gene54220:intron | 45.0% |
| ! | GGCCGACTGAAATACTTTTG+GGG | - | chr5.1:6842206-6842225 | MS.gene54220:intron | 45.0% |
| ! | TCAAAGCATCTCCTACTGCT+TGG | + | chr5.1:6843679-6843698 | None:intergenic | 45.0% |
| ! | TCTGAAATCAACGGTTCCTC+TGG | - | chr5.1:6843984-6844003 | MS.gene54220:intron | 45.0% |
| ! | TTGGTGGGTAGAAATGCAAC+TGG | + | chr5.1:6844196-6844215 | None:intergenic | 45.0% |
| ! | TTGTACTGACCTGAATGAGC+TGG | + | chr5.1:6842503-6842522 | None:intergenic | 45.0% |
| ! | TTTAGCCACACTGTTGGCTA+GGG | + | chr5.1:6844679-6844698 | None:intergenic | 45.0% |
| !! | AGTGAAGGTGTCGTATGGTA+CGG | - | chr5.1:6840657-6840676 | MS.gene54220:intron | 45.0% |
| !! | GCTAGTTGGTTCTAGTTTGC+AGG | - | chr5.1:6843107-6843126 | MS.gene54220:intron | 45.0% |
| !! | GGCTTTGGTTCTAAAGATGC+TGG | - | chr5.1:6842861-6842880 | MS.gene54220:intron | 45.0% |
| !! | GTTCTAAAGATGCTGGCACA+AGG | - | chr5.1:6842868-6842887 | MS.gene54220:intron | 45.0% |
| !! | TACTTTTGGGGAGAGACACA+AGG | - | chr5.1:6842218-6842237 | MS.gene54220:intron | 45.0% |
| !! | TAGAAATGCAACTGGCCTTG+AGG | + | chr5.1:6844188-6844207 | None:intergenic | 45.0% |
| !! | TGCTTTGAGTGGAGTGCTTT+TGG | - | chr5.1:6843691-6843710 | MS.gene54220:intron | 45.0% |
| !! | TTTGAAGGACTTGTTGGCTG+GGG | + | chr5.1:6841315-6841334 | None:intergenic | 45.0% |
| !! | TTTGAGTGGAGTGCTTTTGG+TGG | - | chr5.1:6843694-6843713 | MS.gene54220:intron | 45.0% |
| !!! | TAAAATTTTAAAAAATCAAT+TGG | + | chr5.1:6844434-6844453 | None:intergenic | 5.0% |
| AAAGAGAAGGTTGCTCCACG+CGG | - | chr5.1:6842840-6842859 | MS.gene54220:intron | 50.0% | |
| AGATACCCTAGCCAACAGTG+TGG | - | chr5.1:6844671-6844690 | MS.gene54220:CDS | 50.0% | |
| AGGGCATGATGAGTGTGAAG+TGG | - | chr5.1:6841495-6841514 | MS.gene54220:CDS | 50.0% | |
| AGTCTCCCTCCTTCAATTGG+TGG | + | chr5.1:6844212-6844231 | None:intergenic | 50.0% | |
| CAAGGAGCAAAGCGAAAGGT+TGG | + | chr5.1:6841143-6841162 | None:intergenic | 50.0% | |
| CACGCAGTATGCAACATGTG+AGG | + | chr5.1:6841640-6841659 | None:intergenic | 50.0% | |
| GGCCTTGAGGTCAAAATGAG+TGG | + | chr5.1:6844175-6844194 | None:intergenic | 50.0% | |
| GGTGGTCGAATCACTAGTAG+AGG | + | chr5.1:6841193-6841212 | None:intergenic | 50.0% | |
| GTCTCCCTCCTTCAATTGGT+GGG | + | chr5.1:6844211-6844230 | None:intergenic | 50.0% | |
| GTGGATGGAGCTAATGGTGT+TGG | - | chr5.1:6842702-6842721 | MS.gene54220:CDS | 50.0% | |
| GTTTGGATGGAGATGCTGAC+CGG | - | chr5.1:6843137-6843156 | MS.gene54220:intron | 50.0% | |
| TGGTCAAGGAGCAAAGCGAA+AGG | + | chr5.1:6841147-6841166 | None:intergenic | 50.0% | |
| TGTTCGACCATCAGGAACTG+AGG | - | chr5.1:6844605-6844624 | MS.gene54220:intron | 50.0% | |
| ! | CGATGCTTTGTTCGACCATC+AGG | - | chr5.1:6844597-6844616 | MS.gene54220:intron | 50.0% |
| ! | GATGGAGCTAATGGTGTTGG+TGG | - | chr5.1:6842705-6842724 | MS.gene54220:CDS | 50.0% |
| ! | GCAGTAGGAGATGCTTTGAG+TGG | - | chr5.1:6843680-6843699 | MS.gene54220:intron | 50.0% |
| ! | GTTTAGCCACACTGTTGGCT+AGG | + | chr5.1:6844680-6844699 | None:intergenic | 50.0% |
| ! | TGCAGGTGTGCTAGTTTGGA+TGG | - | chr5.1:6843124-6843143 | MS.gene54220:intron | 50.0% |
| ! | TTGATGGCTTCCTGCAAACC+AGG | + | chr5.1:6844089-6844108 | None:intergenic | 50.0% |
| !! | GGATTCCGTTTGATGGGTTC+AGG | - | chr5.1:6842185-6842204 | MS.gene54220:intron | 50.0% |
| !! | GTAGGAGTGAAGGTGTCGTA+TGG | - | chr5.1:6840652-6840671 | MS.gene54220:intron | 50.0% |
| !! | TCTTTAGAACCAAAGCCGCG+TGG | + | chr5.1:6842858-6842877 | None:intergenic | 50.0% |
| !! | TGCATCGATTCTGTCGTCGA+CGG | - | chr5.1:6840696-6840715 | MS.gene54220:intron | 50.0% |
| !! | TTGAAGGACTTGTTGGCTGG+GGG | + | chr5.1:6841314-6841333 | None:intergenic | 50.0% |
| AACTGCGGCAAAGCACGTCT+TGG | - | chr5.1:6843292-6843311 | MS.gene54220:intron | 55.0% | |
| ACATACTGAGTGGCACCCCT+CGG | + | chr5.1:6841556-6841575 | None:intergenic | 55.0% | |
| ACTGTGGTTGTGAGTCCACC+TGG | - | chr5.1:6844068-6844087 | MS.gene54220:intron | 55.0% | |
| AGCTTCCTGCGTGGATGCTT+CGG | + | chr5.1:6844649-6844668 | None:intergenic | 55.0% | |
| ATGGCTTCCTGCAAACCAGG+TGG | + | chr5.1:6844086-6844105 | None:intergenic | 55.0% | |
| GTCGGCCTGAACCCATCAAA+CGG | + | chr5.1:6842193-6842212 | None:intergenic | 55.0% | |
| TCGTCGACGGTGTACAGAGT+TGG | - | chr5.1:6840709-6840728 | MS.gene54220:intron | 55.0% | |
| TCTACCTAGCAGGCAGCTCA+AGG | - | chr5.1:6843775-6843794 | MS.gene54220:intron | 55.0% | |
| TCTCGCTTCTTGCTCCCTCA+AGG | - | chr5.1:6840505-6840524 | MS.gene54220:CDS | 55.0% | |
| TGGGTGATTCCCATCTCCGA+GGG | - | chr5.1:6841537-6841556 | MS.gene54220:CDS | 55.0% | |
| TTGGGTGATTCCCATCTCCG+AGG | - | chr5.1:6841536-6841555 | MS.gene54220:CDS | 55.0% | |
| ! | ATATGCCGAAGCATCCACGC+AGG | - | chr5.1:6844641-6844660 | MS.gene54220:intron | 55.0% |
| ! | TGTGAGTCCACCTGGTTTGC+AGG | - | chr5.1:6844076-6844095 | MS.gene54220:intron | 55.0% |
| !! | AAGGTGTCGTATGGTACGGC+GGG | - | chr5.1:6840661-6840680 | MS.gene54220:intron | 55.0% |
| !! | GAAGGTGTCGTATGGTACGG+CGG | - | chr5.1:6840660-6840679 | MS.gene54220:intron | 55.0% |
| AAGGTTGCTCCACGCGGCTT+TGG | - | chr5.1:6842846-6842865 | MS.gene54220:intron | 60.0% | |
| CTGACCTTGAGCTGCCTGCT+AGG | + | chr5.1:6843782-6843801 | None:intergenic | 60.0% | |
| GGAGCTGTTGCGTCCGACAT+GGG | - | chr5.1:6842388-6842407 | MS.gene54220:CDS | 60.0% | |
| GGGAGAGACACAAGGCCAAG+TGG | - | chr5.1:6842226-6842245 | MS.gene54220:intron | 60.0% | |
| GGGTGATTCCCATCTCCGAG+GGG | - | chr5.1:6841538-6841557 | MS.gene54220:CDS | 60.0% | |
| GGTATCTGCAGCTTCCTGCG+TGG | + | chr5.1:6844658-6844677 | None:intergenic | 60.0% | |
| TGGAGCTGTTGCGTCCGACA+TGG | - | chr5.1:6842387-6842406 | MS.gene54220:CDS | 60.0% | |
| GAGTGGCACCCCTCGGAGAT+GGG | + | chr5.1:6841549-6841568 | None:intergenic | 65.0% | |
| TGAGTGGCACCCCTCGGAGA+TGG | + | chr5.1:6841550-6841569 | None:intergenic | 65.0% | |
| GGGCATAAAGGCGGCGGAGC+AGG | - | chr5.1:6842459-6842478 | MS.gene54220:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 6840466 | 6844722 | 6840466 | ID=MS.gene54220 |
| chr5.1 | mRNA | 6840466 | 6844722 | 6840466 | ID=MS.gene54220.t1;Parent=MS.gene54220 |
| chr5.1 | exon | 6844662 | 6844722 | 6844662 | ID=MS.gene54220.t1.exon1;Parent=MS.gene54220.t1 |
| chr5.1 | CDS | 6844662 | 6844722 | 6844662 | ID=cds.MS.gene54220.t1;Parent=MS.gene54220.t1 |
| chr5.1 | exon | 6844270 | 6844532 | 6844270 | ID=MS.gene54220.t1.exon2;Parent=MS.gene54220.t1 |
| chr5.1 | CDS | 6844270 | 6844532 | 6844270 | ID=cds.MS.gene54220.t1;Parent=MS.gene54220.t1 |
| chr5.1 | exon | 6842912 | 6843031 | 6842912 | ID=MS.gene54220.t1.exon3;Parent=MS.gene54220.t1 |
| chr5.1 | CDS | 6842912 | 6843031 | 6842912 | ID=cds.MS.gene54220.t1;Parent=MS.gene54220.t1 |
| chr5.1 | exon | 6842676 | 6842818 | 6842676 | ID=MS.gene54220.t1.exon4;Parent=MS.gene54220.t1 |
| chr5.1 | CDS | 6842676 | 6842818 | 6842676 | ID=cds.MS.gene54220.t1;Parent=MS.gene54220.t1 |
| chr5.1 | exon | 6842299 | 6842550 | 6842299 | ID=MS.gene54220.t1.exon5;Parent=MS.gene54220.t1 |
| chr5.1 | CDS | 6842299 | 6842550 | 6842299 | ID=cds.MS.gene54220.t1;Parent=MS.gene54220.t1 |
| chr5.1 | exon | 6841647 | 6842059 | 6841647 | ID=MS.gene54220.t1.exon6;Parent=MS.gene54220.t1 |
| chr5.1 | CDS | 6841647 | 6842059 | 6841647 | ID=cds.MS.gene54220.t1;Parent=MS.gene54220.t1 |
| chr5.1 | exon | 6841392 | 6841567 | 6841392 | ID=MS.gene54220.t1.exon7;Parent=MS.gene54220.t1 |
| chr5.1 | CDS | 6841392 | 6841567 | 6841392 | ID=cds.MS.gene54220.t1;Parent=MS.gene54220.t1 |
| chr5.1 | exon | 6841069 | 6841165 | 6841069 | ID=MS.gene54220.t1.exon8;Parent=MS.gene54220.t1 |
| chr5.1 | CDS | 6841069 | 6841165 | 6841069 | ID=cds.MS.gene54220.t1;Parent=MS.gene54220.t1 |
| chr5.1 | exon | 6840466 | 6840608 | 6840466 | ID=MS.gene54220.t1.exon9;Parent=MS.gene54220.t1 |
| chr5.1 | CDS | 6840466 | 6840608 | 6840466 | ID=cds.MS.gene54220.t1;Parent=MS.gene54220.t1 |
| Gene Sequence |
| Protein sequence |
