Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56052.t1 | XP_003588551.1 | 97.4 | 385 | 10 | 0 | 1 | 385 | 1 | 385 | 3.20E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56052.t1 | Q08298 | 60.7 | 392 | 145 | 6 | 1 | 384 | 1 | 391 | 1.3e-85 | 318.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56052.t1 | G7I4D4 | 97.4 | 385 | 10 | 0 | 1 | 385 | 1 | 385 | 2.3e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene56052 | 0.844564 | 6.99E-59 | -1.69E-46 |
| MS.gene049907 | MS.gene56052 | 0.806671 | 7.35E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene56052 | 0.802388 | 5.74E-49 | -1.69E-46 |
| MS.gene050520 | MS.gene56052 | 0.84001 | 1.12E-57 | -1.69E-46 |
| MS.gene051255 | MS.gene56052 | 0.855275 | 7.04E-62 | -1.69E-46 |
| MS.gene051360 | MS.gene56052 | 0.845494 | 3.92E-59 | -1.69E-46 |
| MS.gene051525 | MS.gene56052 | 0.815704 | 8.07E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene56052 | 0.814986 | 1.16E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene56052 | 0.801119 | 1.05E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene56052 | 0.848781 | 4.93E-60 | -1.69E-46 |
| MS.gene052485 | MS.gene56052 | 0.82035 | 7.18E-53 | -1.69E-46 |
| MS.gene052999 | MS.gene56052 | 0.827839 | 1.25E-54 | -1.69E-46 |
| MS.gene053169 | MS.gene56052 | 0.829504 | 4.96E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene56052 | 0.827516 | 1.50E-54 | -1.69E-46 |
| MS.gene053813 | MS.gene56052 | 0.812088 | 5.05E-51 | -1.69E-46 |
| MS.gene053928 | MS.gene56052 | 0.810858 | 9.35E-51 | -1.69E-46 |
| MS.gene054010 | MS.gene56052 | 0.821326 | 4.28E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene56052 | 0.811771 | 5.93E-51 | -1.69E-46 |
| MS.gene054013 | MS.gene56052 | 0.815886 | 7.35E-52 | -1.69E-46 |
| MS.gene054556 | MS.gene56052 | 0.837786 | 4.23E-57 | -1.69E-46 |
| MS.gene055116 | MS.gene56052 | 0.810872 | 9.29E-51 | -1.69E-46 |
| MS.gene055604 | MS.gene56052 | 0.812359 | 4.41E-51 | -1.69E-46 |
| MS.gene055666 | MS.gene56052 | 0.829848 | 4.09E-55 | -1.69E-46 |
| MS.gene055909 | MS.gene56052 | 0.811344 | 7.34E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene56052 | 0.814606 | 1.41E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene56052 | 0.810463 | 1.14E-50 | -1.69E-46 |
| MS.gene056902 | MS.gene56052 | 0.820457 | 6.79E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene56052 | 0.823591 | 1.28E-53 | -1.69E-46 |
| MS.gene057448 | MS.gene56052 | 0.81612 | 6.51E-52 | -1.69E-46 |
| MS.gene057449 | MS.gene56052 | 0.804714 | 1.89E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene56052 | 0.8173 | 3.54E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene56052 | 0.817304 | 3.53E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene56052 | 0.808221 | 3.45E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene56052 | 0.813531 | 2.44E-51 | -1.69E-46 |
| MS.gene05842 | MS.gene56052 | 0.82228 | 2.58E-53 | -1.69E-46 |
| MS.gene058948 | MS.gene56052 | 0.81298 | 3.23E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene56052 | 0.802541 | 5.34E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene56052 | 0.803253 | 3.81E-49 | -1.69E-46 |
| MS.gene059129 | MS.gene56052 | 0.884921 | 1.27E-71 | -1.69E-46 |
| MS.gene059420 | MS.gene56052 | 0.823709 | 1.20E-53 | -1.69E-46 |
| MS.gene059674 | MS.gene56052 | 0.822833 | 1.92E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene56052 | 0.808624 | 2.83E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene56052 | 0.812763 | 3.60E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene56052 | 0.8154 | 9.43E-52 | -1.69E-46 |
| MS.gene059711 | MS.gene56052 | 0.817609 | 3.02E-52 | -1.69E-46 |
| MS.gene059974 | MS.gene56052 | 0.876957 | 9.24E-69 | -1.69E-46 |
| MS.gene060469 | MS.gene56052 | 0.804298 | 2.31E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene56052 | 0.838377 | 2.98E-57 | -1.69E-46 |
| MS.gene060986 | MS.gene56052 | 0.82633 | 2.88E-54 | -1.69E-46 |
| MS.gene061154 | MS.gene56052 | 0.836262 | 1.04E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56052.t1 | MTR_1g008500 | 97.143 | 385 | 11 | 0 | 1 | 385 | 1 | 385 | 0.0 | 764 |
| MS.gene56052.t1 | MTR_0312s0030 | 63.239 | 389 | 75 | 7 | 1 | 385 | 1 | 325 | 2.91e-162 | 458 |
| MS.gene56052.t1 | MTR_1g007520 | 63.239 | 389 | 75 | 7 | 1 | 385 | 1 | 325 | 2.91e-162 | 458 |
| MS.gene56052.t1 | MTR_1g008590 | 63.239 | 389 | 75 | 7 | 1 | 385 | 1 | 325 | 1.85e-155 | 441 |
| MS.gene56052.t1 | MTR_1g008510 | 61.538 | 390 | 81 | 6 | 1 | 385 | 1 | 326 | 2.07e-155 | 441 |
| MS.gene56052.t1 | MTR_1g008560 | 58.987 | 395 | 87 | 6 | 1 | 385 | 1 | 330 | 2.49e-150 | 428 |
| MS.gene56052.t1 | MTR_1g008450 | 59.067 | 386 | 84 | 9 | 1 | 385 | 1 | 313 | 5.79e-142 | 406 |
| MS.gene56052.t1 | MTR_3g109490 | 51.813 | 386 | 117 | 5 | 1 | 383 | 1 | 320 | 4.03e-134 | 386 |
| MS.gene56052.t1 | MTR_1g008530 | 79.452 | 219 | 44 | 1 | 168 | 385 | 6 | 224 | 5.60e-127 | 365 |
| MS.gene56052.t1 | MTR_1g008470 | 68.657 | 268 | 66 | 4 | 118 | 385 | 51 | 300 | 4.36e-125 | 363 |
| MS.gene56052.t1 | MTR_1g008470 | 75.000 | 64 | 13 | 1 | 1 | 64 | 1 | 61 | 3.88e-22 | 95.9 |
| MS.gene56052.t1 | MTR_1g008460 | 65.399 | 263 | 73 | 5 | 126 | 385 | 50 | 297 | 7.17e-115 | 337 |
| MS.gene56052.t1 | MTR_1g008460 | 76.190 | 63 | 12 | 1 | 1 | 63 | 1 | 60 | 1.93e-22 | 96.7 |
| MS.gene56052.t1 | MTR_1g008580 | 83.626 | 171 | 28 | 0 | 214 | 384 | 1 | 171 | 6.86e-104 | 304 |
| MS.gene56052.t1 | MTR_4g069680 | 43.304 | 224 | 122 | 4 | 166 | 385 | 65 | 287 | 1.28e-60 | 197 |
| MS.gene56052.t1 | MTR_3g107830 | 43.750 | 224 | 121 | 3 | 166 | 385 | 34 | 256 | 5.13e-59 | 192 |
| MS.gene56052.t1 | MTR_3g116410 | 42.857 | 224 | 123 | 4 | 166 | 385 | 54 | 276 | 9.82e-58 | 190 |
| MS.gene56052.t1 | MTR_3g116380 | 43.243 | 222 | 120 | 4 | 166 | 383 | 82 | 301 | 2.53e-57 | 189 |
| MS.gene56052.t1 | MTR_1g008420 | 50.000 | 228 | 68 | 10 | 14 | 237 | 14 | 199 | 3.63e-48 | 163 |
| MS.gene56052.t1 | MTR_3g116320 | 41.284 | 218 | 118 | 5 | 171 | 383 | 474 | 686 | 2.98e-46 | 168 |
| MS.gene56052.t1 | MTR_3g116270 | 39.171 | 217 | 124 | 5 | 171 | 383 | 292 | 504 | 1.27e-45 | 164 |
| MS.gene56052.t1 | MTR_4g069570 | 37.443 | 219 | 127 | 6 | 171 | 383 | 120 | 334 | 2.18e-44 | 157 |
| MS.gene56052.t1 | MTR_4g069040 | 36.287 | 237 | 140 | 7 | 153 | 383 | 277 | 508 | 5.06e-43 | 157 |
| MS.gene56052.t1 | MTR_4g069550 | 37.443 | 219 | 127 | 6 | 171 | 383 | 247 | 461 | 4.42e-41 | 151 |
| MS.gene56052.t1 | MTR_8g064500 | 36.530 | 219 | 129 | 5 | 171 | 384 | 159 | 372 | 1.53e-39 | 145 |
| MS.gene56052.t1 | MTR_4g069520 | 36.986 | 219 | 128 | 6 | 171 | 383 | 507 | 721 | 4.99e-39 | 148 |
| MS.gene56052.t1 | MTR_4g069520 | 36.986 | 219 | 128 | 6 | 171 | 383 | 493 | 707 | 5.69e-39 | 148 |
| MS.gene56052.t1 | MTR_8g064560 | 35.616 | 219 | 131 | 5 | 171 | 384 | 412 | 625 | 6.44e-36 | 139 |
| MS.gene56052.t1 | MTR_5g034320 | 33.641 | 217 | 136 | 5 | 171 | 383 | 415 | 627 | 2.18e-34 | 134 |
| MS.gene56052.t1 | MTR_8g064530 | 35.160 | 219 | 132 | 6 | 171 | 384 | 429 | 642 | 3.32e-34 | 134 |
| MS.gene56052.t1 | MTR_3g078090 | 37.173 | 191 | 113 | 4 | 198 | 384 | 439 | 626 | 4.69e-33 | 130 |
| MS.gene56052.t1 | MTR_8g445170 | 40.667 | 150 | 82 | 3 | 234 | 383 | 240 | 382 | 2.42e-32 | 125 |
| MS.gene56052.t1 | MTR_6g086530 | 33.333 | 195 | 122 | 6 | 198 | 385 | 13 | 206 | 3.62e-32 | 120 |
| MS.gene56052.t1 | MTR_8g046000 | 35.455 | 220 | 108 | 8 | 170 | 383 | 30 | 221 | 7.21e-32 | 120 |
| MS.gene56052.t1 | MTR_8g445140 | 43.066 | 137 | 71 | 3 | 247 | 383 | 172 | 301 | 9.66e-32 | 122 |
| MS.gene56052.t1 | MTR_2g081610 | 35.514 | 214 | 109 | 7 | 171 | 383 | 73 | 258 | 2.06e-31 | 120 |
| MS.gene56052.t1 | MTR_8g045890 | 45.255 | 137 | 68 | 4 | 247 | 383 | 301 | 430 | 1.84e-30 | 121 |
| MS.gene56052.t1 | MTR_8g045890 | 44.526 | 137 | 69 | 4 | 247 | 383 | 342 | 471 | 3.59e-30 | 121 |
| MS.gene56052.t1 | MTR_8g045880 | 42.466 | 146 | 77 | 3 | 238 | 383 | 175 | 313 | 3.78e-30 | 118 |
| MS.gene56052.t1 | MTR_8g045890 | 45.255 | 137 | 68 | 4 | 247 | 383 | 379 | 508 | 4.00e-30 | 121 |
| MS.gene56052.t1 | MTR_8g045880 | 42.466 | 146 | 77 | 3 | 238 | 383 | 210 | 348 | 5.60e-30 | 119 |
| MS.gene56052.t1 | MTR_8g045880 | 42.466 | 146 | 77 | 3 | 238 | 383 | 212 | 350 | 7.36e-30 | 118 |
| MS.gene56052.t1 | MTR_4g133840 | 34.043 | 188 | 105 | 4 | 198 | 382 | 15 | 186 | 8.63e-30 | 114 |
| MS.gene56052.t1 | MTR_2g081590 | 32.889 | 225 | 122 | 7 | 160 | 383 | 62 | 258 | 5.33e-29 | 114 |
| MS.gene56052.t1 | MTR_2g081770 | 32.558 | 215 | 119 | 6 | 171 | 383 | 79 | 269 | 1.97e-28 | 112 |
| MS.gene56052.t1 | MTR_5g033340 | 30.455 | 220 | 145 | 5 | 169 | 384 | 164 | 379 | 6.27e-26 | 107 |
| MS.gene56052.t1 | MTR_5g033340 | 31.613 | 155 | 99 | 4 | 216 | 366 | 2 | 153 | 1.80e-14 | 74.7 |
| MS.gene56052.t1 | MTR_1g045860 | 38.776 | 147 | 78 | 4 | 240 | 383 | 121 | 258 | 7.95e-25 | 102 |
| MS.gene56052.t1 | MTR_5g033350 | 31.250 | 192 | 125 | 4 | 197 | 384 | 12 | 200 | 3.59e-24 | 99.0 |
| MS.gene56052.t1 | MTR_8g044290 | 45.455 | 110 | 54 | 3 | 240 | 349 | 229 | 332 | 3.81e-23 | 100 |
| MS.gene56052.t1 | MTR_5g033330 | 30.317 | 221 | 140 | 6 | 169 | 382 | 403 | 616 | 1.03e-22 | 100 |
| MS.gene56052.t1 | MTR_5g033330 | 30.732 | 205 | 128 | 6 | 169 | 366 | 195 | 392 | 1.91e-19 | 90.5 |
| MS.gene56052.t1 | MTR_5g033330 | 31.034 | 174 | 113 | 4 | 197 | 366 | 14 | 184 | 1.66e-16 | 81.6 |
| MS.gene56052.t1 | MTR_5g033360 | 28.767 | 219 | 132 | 6 | 169 | 384 | 25 | 222 | 4.96e-21 | 91.3 |
| MS.gene56052.t1 | MTR_4g068420 | 35.294 | 136 | 68 | 5 | 251 | 383 | 1 | 119 | 3.57e-20 | 85.9 |
| MS.gene56052.t1 | MTR_8g075930 | 41.772 | 79 | 42 | 2 | 298 | 373 | 10 | 87 | 9.73e-18 | 77.8 |
| MS.gene56052.t1 | MTR_5g033430 | 34.831 | 89 | 52 | 3 | 300 | 384 | 24 | 110 | 1.78e-13 | 67.0 |
| MS.gene56052.t1 | MTR_5g033440 | 32.184 | 87 | 57 | 2 | 300 | 384 | 24 | 110 | 2.90e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56052.t1 | AT5G25610 | 50.120 | 417 | 149 | 10 | 1 | 384 | 1 | 391 | 1.04e-120 | 355 |
| MS.gene56052.t1 | AT1G49320 | 38.095 | 231 | 133 | 5 | 164 | 385 | 51 | 280 | 1.76e-48 | 166 |
| MS.gene56052.t1 | AT1G60390 | 35.780 | 218 | 128 | 6 | 171 | 382 | 409 | 620 | 4.77e-35 | 136 |
| MS.gene56052.t1 | AT1G70370 | 35.023 | 217 | 133 | 4 | 171 | 383 | 411 | 623 | 2.39e-34 | 134 |
| MS.gene56052.t1 | AT1G70370 | 35.023 | 217 | 133 | 4 | 171 | 383 | 411 | 623 | 2.39e-34 | 134 |
| MS.gene56052.t1 | AT1G23760 | 34.101 | 217 | 135 | 5 | 171 | 383 | 407 | 619 | 1.18e-32 | 129 |
Find 73 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCTTTGTGTAACATCTT+TGG | 0.229077 | 1.3:-11393769 | MS.gene56052:CDS |
| TTCTTCTGTTCCTTCCTTGA+TGG | 0.248730 | 1.3:+11393851 | None:intergenic |
| TCTACTTTGCTTGAAGAAAA+AGG | 0.263194 | 1.3:+11393894 | None:intergenic |
| GGCAAAAGGTGTGAAGAAAT+TGG | 0.273962 | 1.3:-11393646 | MS.gene56052:CDS |
| TTCCACAGGATCATGTTGTT+TGG | 0.285326 | 1.3:-11393392 | MS.gene56052:CDS |
| TTGGACTTCCAATACAATTC+AGG | 0.287171 | 1.3:+11396420 | None:intergenic |
| ATTGAATTAGCAACATCTTT+AGG | 0.293417 | 1.3:+11393918 | None:intergenic |
| ACTTGAAAAGCCAAATGTTT+AGG | 0.303666 | 1.3:+11393456 | None:intergenic |
| TCCACAGGATCATGTTGTTT+GGG | 0.305699 | 1.3:-11393391 | MS.gene56052:CDS |
| CATTTGAGTTGTGGGAAGTT+TGG | 0.322640 | 1.3:+11396401 | None:intergenic |
| AGGAGATCTGTGATGGCTTT+TGG | 0.348386 | 1.3:+11396378 | None:intergenic |
| GTGCCTTTGGAAGGTGTTGA+TGG | 0.355685 | 1.3:-11393531 | MS.gene56052:CDS |
| GGAGGTGTGAATGTTGATTC+AGG | 0.361960 | 1.3:-11394329 | MS.gene56052:CDS |
| AAGAAGAAAAGTGCTACATT+TGG | 0.370145 | 1.3:+11394020 | None:intergenic |
| ACAATGGAATCCTAAACATT+TGG | 0.370419 | 1.3:-11393466 | MS.gene56052:CDS |
| TAAAGTTTACTCTGTGCCTT+TGG | 0.379443 | 1.3:-11393544 | MS.gene56052:CDS |
| CCTTACCACCTGAATTGTAT+TGG | 0.385889 | 1.3:-11396428 | MS.gene56052:CDS |
| TGTAACATCTTTGGAATCAA+TGG | 0.425700 | 1.3:-11393760 | MS.gene56052:CDS |
| GCAAAAGGTGTGAAGAAATT+GGG | 0.438714 | 1.3:-11393645 | MS.gene56052:CDS |
| CAAGAATATGTAATGGCAAA+AGG | 0.445313 | 1.3:-11393660 | MS.gene56052:CDS |
| CCTTGATGGAGAACATGTTA+AGG | 0.448883 | 1.3:+11393865 | None:intergenic |
| TGTGGAAGGAAGTGACAAAC+TGG | 0.450964 | 1.3:+11393408 | None:intergenic |
| ATCACAGATCTCCTTCATCT+TGG | 0.452756 | 1.3:-11396369 | MS.gene56052:intron |
| CAAGTGCTCAATGTTCAACC+TGG | 0.454270 | 1.3:-11393438 | MS.gene56052:CDS |
| GATTTCACTACTTCGAAACT+TGG | 0.458312 | 1.3:-11393735 | MS.gene56052:CDS |
| GTCAATGTTCATGCAGGAAA+AGG | 0.459109 | 1.3:-11394131 | MS.gene56052:CDS |
| ACATTCACTGAGGTTCCTCC+TGG | 0.460070 | 1.3:+11394296 | None:intergenic |
| ACATTCACTGCTGTTCCACC+TGG | 0.477807 | 1.3:+11394233 | None:intergenic |
| TTCAGGTGGTAAGGCAGCAT+TGG | 0.480612 | 1.3:+11396437 | None:intergenic |
| TTTCCAACTGAAACATGTAC+TGG | 0.492608 | 1.3:+11394098 | None:intergenic |
| TTAACTGCTGTTCCACCACC+TGG | 0.493188 | 1.3:+11394170 | None:intergenic |
| TACATTGAGTATGATAAAGA+TGG | 0.494921 | 1.3:+11396582 | None:intergenic |
| AGTTTGTCACTTCCTTCCAC+AGG | 0.501409 | 1.3:-11393406 | MS.gene56052:CDS |
| CCAATACAATTCAGGTGGTA+AGG | 0.508538 | 1.3:+11396428 | None:intergenic |
| AAAGGCACATCAGTAGATGT+AGG | 0.513274 | 1.3:-11394356 | MS.gene56052:CDS |
| GGTGGAGTCCATGTTGATGC+AGG | 0.515104 | 1.3:-11394266 | MS.gene56052:CDS |
| GTTTACTCTGTGCCTTTGGA+AGG | 0.519063 | 1.3:-11393540 | MS.gene56052:CDS |
| TCAGTGAATGTTGGCAAAGG+TGG | 0.519162 | 1.3:-11394284 | MS.gene56052:CDS |
| GTTCATGTAAATGCAGGTAA+AGG | 0.521792 | 1.3:-11394197 | MS.gene56052:CDS |
| TGCGAAGACAATGGTATCAA+AGG | 0.525214 | 1.3:-11393798 | MS.gene56052:CDS |
| ACATCAGTAGATGTAGGAAA+AGG | 0.536878 | 1.3:-11394350 | MS.gene56052:CDS |
| CCTTAACATGTTCTCCATCA+AGG | 0.536982 | 1.3:-11393865 | MS.gene56052:CDS |
| GGTGGAACAGCAGTGAATGT+TGG | 0.538800 | 1.3:-11394230 | MS.gene56052:CDS |
| TGACAAACTGGAACAGTCCC+AGG | 0.541759 | 1.3:+11393420 | None:intergenic |
| GTTCATGCAGGAAAAGGAAG+AGG | 0.544075 | 1.3:-11394125 | MS.gene56052:CDS |
| ACAGCAGTTAATGTTGGAAA+AGG | 0.545041 | 1.3:-11394158 | MS.gene56052:CDS |
| AAACCAGTACATGTTTCAGT+TGG | 0.548855 | 1.3:-11394101 | MS.gene56052:CDS |
| GGTGGAGTTCATGTAAATGC+AGG | 0.553242 | 1.3:-11394203 | MS.gene56052:CDS |
| GCAGTTAATGTTGGAAAAGG+TGG | 0.564699 | 1.3:-11394155 | MS.gene56052:CDS |
| GGTGGAACAGCAGTTAATGT+TGG | 0.569822 | 1.3:-11394164 | MS.gene56052:CDS |
| GCAGTGAATGTTGGAAAAGG+TGG | 0.574359 | 1.3:-11394221 | MS.gene56052:CDS |
| ATATGTACTAACCAAGATGA+AGG | 0.581463 | 1.3:+11396358 | None:intergenic |
| GACTTCCAATACAATTCAGG+TGG | 0.581844 | 1.3:+11396423 | None:intergenic |
| GGTGGTGTCAATGTTCATGC+AGG | 0.582435 | 1.3:-11394137 | MS.gene56052:CDS |
| TGACTTGCAAGAATATGTAA+TGG | 0.583650 | 1.3:-11393667 | MS.gene56052:CDS |
| ACCTCAGTGAATGTTGGCAA+AGG | 0.595519 | 1.3:-11394287 | MS.gene56052:CDS |
| GGAGGAACCTCAGTGAATGT+TGG | 0.596804 | 1.3:-11394293 | MS.gene56052:CDS |
| AACATGTTCTCCATCAAGGA+AGG | 0.601008 | 1.3:-11393861 | MS.gene56052:CDS |
| AAGTGCTCAATGTTCAACCT+GGG | 0.607659 | 1.3:-11393437 | MS.gene56052:CDS |
| GGTAAAGGAAAACCAGGTGG+TGG | 0.607966 | 1.3:-11394182 | MS.gene56052:CDS |
| ACAGCAGTGAATGTTGGAAA+AGG | 0.617678 | 1.3:-11394224 | MS.gene56052:CDS |
| AAGATGAAGGAGATCTGTGA+TGG | 0.624460 | 1.3:+11396371 | None:intergenic |
| TCAGTAGATGTAGGAAAAGG+AGG | 0.627555 | 1.3:-11394347 | MS.gene56052:CDS |
| AAACAACATGATCCTGTGGA+AGG | 0.641220 | 1.3:+11393394 | None:intergenic |
| GTAGATTGGACAGAAGAGAA+AGG | 0.646278 | 1.3:-11394374 | MS.gene56052:intron |
| ACCCAAACAACATGATCCTG+TGG | 0.647573 | 1.3:+11393390 | None:intergenic |
| AGACAATGGTATCAAAGGAG+AGG | 0.648533 | 1.3:-11393793 | MS.gene56052:CDS |
| ATAAGTGAATGCGAAGACAA+TGG | 0.652668 | 1.3:-11393807 | MS.gene56052:CDS |
| AATGCAGGTAAAGGAAAACC+AGG | 0.656269 | 1.3:-11394188 | MS.gene56052:CDS |
| CTTCCATCAACACCTTCCAA+AGG | 0.662188 | 1.3:+11393528 | None:intergenic |
| ACCTTTGCCAACATTCACTG+AGG | 0.668754 | 1.3:+11394286 | None:intergenic |
| GTCACACTGATACTTCACAA+TGG | 0.703629 | 1.3:-11393482 | MS.gene56052:CDS |
| GCAGGTAAAGGAAAACCAGG+TGG | 0.762633 | 1.3:-11394185 | MS.gene56052:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATAATTTTTTTCCTA+TGG | + | chr1.3:11394878-11394897 | None:intergenic | 10.0% |
| !!! | GGAAAAAAATTATATTTTTT+TGG | - | chr1.3:11394880-11394899 | MS.gene56052:intron | 10.0% |
| !!! | TTTTATTAAATAAAATGAAC+GGG | - | chr1.3:11394165-11394184 | MS.gene56052:CDS | 10.0% |
| !! | AGAAAAATAAAATATGTTGA+GGG | - | chr1.3:11394836-11394855 | MS.gene56052:intron | 15.0% |
| !! | ATATCATCATATATAAAGAT+TGG | - | chr1.3:11394230-11394249 | MS.gene56052:CDS | 15.0% |
| !! | TAAAAAGGAACTAAAATATT+AGG | + | chr1.3:11393456-11393475 | None:intergenic | 15.0% |
| !! | TTTGGAAATCTTAAAAAAAA+TGG | - | chr1.3:11395424-11395443 | MS.gene56052:intron | 15.0% |
| !!! | AAAAACATAATCTTTTTGAA+CGG | + | chr1.3:11395254-11395273 | None:intergenic | 15.0% |
| !! | AAAAGCTCAATCTTAAAATT+TGG | - | chr1.3:11394203-11394222 | MS.gene56052:CDS | 20.0% |
| !! | ATATATATGAATGTGTAGAT+TGG | - | chr1.3:11395593-11395612 | MS.gene56052:intron | 20.0% |
| !! | CAAACTAATGAAATTTGATT+CGG | - | chr1.3:11395528-11395547 | MS.gene56052:intron | 20.0% |
| !! | GAGAAAAATAAAATATGTTG+AGG | - | chr1.3:11394835-11394854 | MS.gene56052:intron | 20.0% |
| !! | GTAGTATATATAGTTATGAA+AGG | - | chr1.3:11393653-11393672 | MS.gene56052:CDS | 20.0% |
| !! | TCTGGTAAAAAATAGTTATA+TGG | - | chr1.3:11393727-11393746 | MS.gene56052:CDS | 20.0% |
| !! | TTAGAAAAAGATTTACATCA+AGG | - | chr1.3:11395982-11396001 | MS.gene56052:intron | 20.0% |
| !! | TTTATATATTATCTCCTAAG+AGG | + | chr1.3:11394004-11394023 | None:intergenic | 20.0% |
| !!! | AAAACATAATCTTTTTGAAC+GGG | + | chr1.3:11395253-11395272 | None:intergenic | 20.0% |
| !!! | AAAATTATATTTTTTTGGGG+TGG | - | chr1.3:11394885-11394904 | MS.gene56052:intron | 20.0% |
| !!! | AAATTATATTTTTTTGGGGT+GGG | - | chr1.3:11394886-11394905 | MS.gene56052:intron | 20.0% |
| !!! | ATTGGTTTGTAATAAGAAAT+CGG | + | chr1.3:11395222-11395241 | None:intergenic | 20.0% |
| !!! | CATATTTTATTTTTCTCAAG+TGG | + | chr1.3:11394832-11394851 | None:intergenic | 20.0% |
| !!! | CATTTTTTGCAATCAAATTT+AGG | + | chr1.3:11393825-11393844 | None:intergenic | 20.0% |
| !!! | TATTTTTGTAATTTCTCCAT+AGG | - | chr1.3:11394859-11394878 | MS.gene56052:intron | 20.0% |
| !!! | TTCTTCTAAAAGTAACTTTT+TGG | + | chr1.3:11395012-11395031 | None:intergenic | 20.0% |
| ! | ACTCACGTATTTATGAAATA+AGG | + | chr1.3:11393916-11393935 | None:intergenic | 25.0% |
| ! | AGAACAAGCAAAATGATTTA+TGG | - | chr1.3:11394975-11394994 | MS.gene56052:intron | 25.0% |
| ! | AGATTTCCAAAAAATGTACA+CGG | + | chr1.3:11395415-11395434 | None:intergenic | 25.0% |
| ! | AGGAACCAAAATAACAAAAA+TGG | + | chr1.3:11393701-11393720 | None:intergenic | 25.0% |
| ! | ATTGAATTAGCAACATCTTT+AGG | + | chr1.3:11396066-11396085 | None:intergenic | 25.0% |
| ! | ATTTCATAAATACGTGAGTT+TGG | - | chr1.3:11393917-11393936 | MS.gene56052:CDS | 25.0% |
| ! | CGAATCAAATTTCATTAGTT+TGG | + | chr1.3:11395530-11395549 | None:intergenic | 25.0% |
| ! | CTAGAGAAAACTAAAGAAAT+TGG | - | chr1.3:11393869-11393888 | MS.gene56052:CDS | 25.0% |
| ! | GGAACCAAAATAACAAAAAT+GGG | + | chr1.3:11393700-11393719 | None:intergenic | 25.0% |
| ! | TACATTGAGTATGATAAAGA+TGG | + | chr1.3:11393402-11393421 | None:intergenic | 25.0% |
| ! | TCAAAACAATGAACTAGTAT+AGG | - | chr1.3:11395075-11395094 | MS.gene56052:intron | 25.0% |
| ! | TGGATTACAAAAATATGACT+TGG | + | chr1.3:11395149-11395168 | None:intergenic | 25.0% |
| ! | TTGTGTCAATTCATAATCAT+AGG | + | chr1.3:11395570-11395589 | None:intergenic | 25.0% |
| ! | TTTCATAAATACGTGAGTTT+GGG | - | chr1.3:11393918-11393937 | MS.gene56052:CDS | 25.0% |
| !! | CAAATTTCATTAGTTTGGAT+TGG | + | chr1.3:11395525-11395544 | None:intergenic | 25.0% |
| !! | TATATTAGAGCATATTTTGC+TGG | + | chr1.3:11394487-11394506 | None:intergenic | 25.0% |
| !!! | ATTTAACCGTGTACATTTTT+TGG | - | chr1.3:11395406-11395425 | MS.gene56052:intron | 25.0% |
| !!! | CATATTTTTGTAATCCATTC+TGG | - | chr1.3:11395152-11395171 | MS.gene56052:intron | 25.0% |
| !!! | TATTTTTTACCAGAGATGTT+AGG | + | chr1.3:11393721-11393740 | None:intergenic | 25.0% |
| !!! | TTTTTTCACTTCTGTTGAAA+CGG | + | chr1.3:11396286-11396305 | None:intergenic | 25.0% |
| AAAAGTAATGCTAGAGAAAG+TGG | + | chr1.3:11394345-11394364 | None:intergenic | 30.0% | |
| AAATGAAAGGTTATGGCTTA+TGG | - | chr1.3:11394707-11394726 | MS.gene56052:intron | 30.0% | |
| AATGAAAGGTTATGGCTTAT+GGG | - | chr1.3:11394708-11394727 | MS.gene56052:intron | 30.0% | |
| ACAATGGAATCCTAAACATT+TGG | - | chr1.3:11396515-11396534 | MS.gene56052:intron | 30.0% | |
| ACTTGAAAAGCCAAATGTTT+AGG | + | chr1.3:11396528-11396547 | None:intergenic | 30.0% | |
| ATATGTACTAACCAAGATGA+AGG | + | chr1.3:11393626-11393645 | None:intergenic | 30.0% | |
| CAAGAATATGTAATGGCAAA+AGG | - | chr1.3:11396321-11396340 | MS.gene56052:intron | 30.0% | |
| CAATAATTATGCATGAGTTG+GGG | + | chr1.3:11394385-11394404 | None:intergenic | 30.0% | |
| CACGTGATAACTAAAGTAAT+TGG | - | chr1.3:11393845-11393864 | MS.gene56052:CDS | 30.0% | |
| CTCATGCATAATTATTGCAA+TGG | - | chr1.3:11394388-11394407 | MS.gene56052:intron | 30.0% | |
| GAAATTGGTCCTATTGATAA+AGG | - | chr1.3:11393884-11393903 | MS.gene56052:CDS | 30.0% | |
| GACAGTAAAAAACTGCATAA+GGG | + | chr1.3:11396401-11396420 | None:intergenic | 30.0% | |
| GCAATAATTATGCATGAGTT+GGG | + | chr1.3:11394386-11394405 | None:intergenic | 30.0% | |
| TATGGAATGACTTATGAGAT+AGG | - | chr1.3:11393745-11393764 | MS.gene56052:CDS | 30.0% | |
| TCTAACACTCACTCATTTAT+TGG | - | chr1.3:11394298-11394317 | MS.gene56052:CDS | 30.0% | |
| TCTACTTTGCTTGAAGAAAA+AGG | + | chr1.3:11396090-11396109 | None:intergenic | 30.0% | |
| TGACAGTAAAAAACTGCATA+AGG | + | chr1.3:11396402-11396421 | None:intergenic | 30.0% | |
| TGCAATAATTATGCATGAGT+TGG | + | chr1.3:11394387-11394406 | None:intergenic | 30.0% | |
| ! | AAACCACTTCAAGTTTCATT+GGG | + | chr1.3:11395188-11395207 | None:intergenic | 30.0% |
| ! | AAAGCTTTGTGTAACATCTT+TGG | - | chr1.3:11396212-11396231 | MS.gene56052:intron | 30.0% |
| ! | AAGCCATAACCTTTCATTTT+TGG | + | chr1.3:11394706-11394725 | None:intergenic | 30.0% |
| ! | GTTTTGTGTATGTGTAATAG+AGG | - | chr1.3:11394785-11394804 | MS.gene56052:intron | 30.0% |
| ! | TGACTTGCAAGAATATGTAA+TGG | - | chr1.3:11396314-11396333 | MS.gene56052:intron | 30.0% |
| !! | AAGAAGAAAAGTGCTACATT+TGG | + | chr1.3:11395964-11395983 | None:intergenic | 30.0% |
| !! | CTAATGAAATTTGATTCGGT+CGG | - | chr1.3:11395532-11395551 | MS.gene56052:intron | 30.0% |
| !! | TAATGAAATTTGATTCGGTC+GGG | - | chr1.3:11395533-11395552 | MS.gene56052:intron | 30.0% |
| !! | TGTAACATCTTTGGAATCAA+TGG | - | chr1.3:11396221-11396240 | MS.gene56052:intron | 30.0% |
| !! | TTTTGTAATCCATTCTGGTT+CGG | - | chr1.3:11395157-11395176 | MS.gene56052:intron | 30.0% |
| !!! | CACACCCATTTTTGTTATTT+TGG | - | chr1.3:11393693-11393712 | MS.gene56052:CDS | 30.0% |
| AAACCAGTACATGTTTCAGT+TGG | - | chr1.3:11395880-11395899 | MS.gene56052:intron | 35.0% | |
| AATGAGTGACAACTGACAAT+CGG | - | chr1.3:11394677-11394696 | MS.gene56052:intron | 35.0% | |
| ACACATAATCGCGATGATTA+AGG | - | chr1.3:11395473-11395492 | MS.gene56052:intron | 35.0% | |
| ACAGCAGTTAATGTTGGAAA+AGG | - | chr1.3:11395823-11395842 | MS.gene56052:intron | 35.0% | |
| ACATCAGTAGATGTAGGAAA+AGG | - | chr1.3:11395631-11395650 | MS.gene56052:intron | 35.0% | |
| AGAGGAAGAGGAAATAAGTT+AGG | - | chr1.3:11394748-11394767 | MS.gene56052:intron | 35.0% | |
| AGTAGCTAGAAATTCACCAT+AGG | - | chr1.3:11394072-11394091 | MS.gene56052:CDS | 35.0% | |
| AGTATACACTCTCCATAAGT+TGG | + | chr1.3:11394128-11394147 | None:intergenic | 35.0% | |
| ATAACCGATTATGTATCCAG+TGG | + | chr1.3:11394944-11394963 | None:intergenic | 35.0% | |
| ATAAGTGAATGCGAAGACAA+TGG | - | chr1.3:11396174-11396193 | MS.gene56052:intron | 35.0% | |
| CGGAGCTAGAAAAAATATCA+GGG | - | chr1.3:11394456-11394475 | MS.gene56052:intron | 35.0% | |
| CTAGAAAAAATATCAGGGGT+GGG | - | chr1.3:11394461-11394480 | MS.gene56052:intron | 35.0% | |
| CTGAATTACGCTCACTAAAA+CGG | - | chr1.3:11394420-11394439 | MS.gene56052:intron | 35.0% | |
| GATTCAGGAAAAACAAAACC+AGG | - | chr1.3:11395667-11395686 | MS.gene56052:intron | 35.0% | |
| GATTTCACTACTTCGAAACT+TGG | - | chr1.3:11396246-11396265 | MS.gene56052:intron | 35.0% | |
| GCAGCATAGTTGTACAAAAA+TGG | + | chr1.3:11395916-11395935 | None:intergenic | 35.0% | |
| GGAGCTAGAAAAAATATCAG+GGG | - | chr1.3:11394457-11394476 | MS.gene56052:intron | 35.0% | |
| GTTCATGTAAATGCAGGTAA+AGG | - | chr1.3:11395784-11395803 | MS.gene56052:intron | 35.0% | |
| TAAAGTTTACTCTGTGCCTT+TGG | - | chr1.3:11396437-11396456 | MS.gene56052:CDS | 35.0% | |
| TAATCATCGCGATTATGTGT+GGG | + | chr1.3:11395473-11395492 | None:intergenic | 35.0% | |
| TGAACCGAACCTTTATCAAT+AGG | + | chr1.3:11393896-11393915 | None:intergenic | 35.0% | |
| TGAATTACGCTCACTAAAAC+GGG | - | chr1.3:11394421-11394440 | MS.gene56052:intron | 35.0% | |
| TGGTCCTATTGATAAAGGTT+CGG | - | chr1.3:11393889-11393908 | MS.gene56052:CDS | 35.0% | |
| TTAATCATCGCGATTATGTG+TGG | + | chr1.3:11395474-11395493 | None:intergenic | 35.0% | |
| TTGGACTTCCAATACAATTC+AGG | + | chr1.3:11393564-11393583 | None:intergenic | 35.0% | |
| TTTCCAACTGAAACATGTAC+TGG | + | chr1.3:11395886-11395905 | None:intergenic | 35.0% | |
| ! | CAAACCACTTCAAGTTTCAT+TGG | + | chr1.3:11395189-11395208 | None:intergenic | 35.0% |
| ! | GCAAAAGGTGTGAAGAAATT+GGG | - | chr1.3:11396336-11396355 | MS.gene56052:intron | 35.0% |
| !! | AAACTTGAAGTGGTTTGCTT+TGG | - | chr1.3:11395192-11395211 | MS.gene56052:intron | 35.0% |
| !! | ATAGAGGAAGCATTAAAGTC+TGG | - | chr1.3:11394801-11394820 | MS.gene56052:intron | 35.0% |
| !! | CCATAACCTTTCATTTTTGG+CGG | + | chr1.3:11394703-11394722 | None:intergenic | 35.0% |
| !! | TAGAGGAAGCATTAAAGTCT+GGG | - | chr1.3:11394802-11394821 | MS.gene56052:intron | 35.0% |
| !! | TTGTTTTTCCTGCATCAACA+TGG | + | chr1.3:11395726-11395745 | None:intergenic | 35.0% |
| !!! | ATTTTGGTTCCTAACATCTC+TGG | - | chr1.3:11393709-11393728 | MS.gene56052:CDS | 35.0% |
| AAACAACATGATCCTGTGGA+AGG | + | chr1.3:11396590-11396609 | None:intergenic | 40.0% | |
| AACATGTTCTCCATCAAGGA+AGG | - | chr1.3:11396120-11396139 | MS.gene56052:intron | 40.0% | |
| AAGATGAAGGAGATCTGTGA+TGG | + | chr1.3:11393613-11393632 | None:intergenic | 40.0% | |
| AAGTGCTCAATGTTCAACCT+GGG | - | chr1.3:11396544-11396563 | MS.gene56052:intron | 40.0% | |
| AATGCAGGTAAAGGAAAACC+AGG | - | chr1.3:11395793-11395812 | MS.gene56052:intron | 40.0% | |
| ACAGCAGTGAATGTTGGAAA+AGG | - | chr1.3:11395757-11395776 | MS.gene56052:intron | 40.0% | |
| ACTAAAACGGGTACATACAG+TGG | - | chr1.3:11394433-11394452 | MS.gene56052:intron | 40.0% | |
| AGAAGTTCTCCACAATGGTA+AGG | + | chr1.3:11393978-11393997 | None:intergenic | 40.0% | |
| AGACAATGGTATCAAAGGAG+AGG | - | chr1.3:11396188-11396207 | MS.gene56052:intron | 40.0% | |
| AGGCACATGCTAGAATAGTT+TGG | + | chr1.3:11393436-11393455 | None:intergenic | 40.0% | |
| ATCACAGATCTCCTTCATCT+TGG | - | chr1.3:11393612-11393631 | MS.gene56052:CDS | 40.0% | |
| ATTCCTCGCTTATTCACCTA+TGG | + | chr1.3:11394091-11394110 | None:intergenic | 40.0% | |
| CATCCCAATGAAACTTGAAG+TGG | - | chr1.3:11395182-11395201 | MS.gene56052:intron | 40.0% | |
| CCAATACAATTCAGGTGGTA+AGG | + | chr1.3:11393556-11393575 | None:intergenic | 40.0% | |
| CCGCCAAAAATGAAAGGTTA+TGG | - | chr1.3:11394700-11394719 | MS.gene56052:intron | 40.0% | |
| CCTTAACATGTTCTCCATCA+AGG | - | chr1.3:11396116-11396135 | MS.gene56052:intron | 40.0% | |
| CCTTACCACCTGAATTGTAT+TGG | - | chr1.3:11393553-11393572 | MS.gene56052:CDS | 40.0% | |
| CCTTGATGGAGAACATGTTA+AGG | + | chr1.3:11396119-11396138 | None:intergenic | 40.0% | |
| GACTTCCAATACAATTCAGG+TGG | + | chr1.3:11393561-11393580 | None:intergenic | 40.0% | |
| GAGGTTTGAACTCCAACTTA+TGG | - | chr1.3:11394113-11394132 | MS.gene56052:CDS | 40.0% | |
| GATCCAACTAAGAGAGAGAA+GGG | - | chr1.3:11394603-11394622 | MS.gene56052:intron | 40.0% | |
| GCAGTTAATGTTGGAAAAGG+TGG | - | chr1.3:11395826-11395845 | MS.gene56052:intron | 40.0% | |
| GCGGAGCTAGAAAAAATATC+AGG | - | chr1.3:11394455-11394474 | MS.gene56052:intron | 40.0% | |
| GCTAGAAAAAATATCAGGGG+TGG | - | chr1.3:11394460-11394479 | MS.gene56052:intron | 40.0% | |
| GTAGATTGGACAGAAGAGAA+AGG | - | chr1.3:11395607-11395626 | MS.gene56052:intron | 40.0% | |
| GTCAATGTTCATGCAGGAAA+AGG | - | chr1.3:11395850-11395869 | MS.gene56052:intron | 40.0% | |
| GTCACACTGATACTTCACAA+TGG | - | chr1.3:11396499-11396518 | MS.gene56052:intron | 40.0% | |
| GTTATGGCTTATGGGTTTGT+AGG | - | chr1.3:11394716-11394735 | MS.gene56052:intron | 40.0% | |
| TAAAGATTGGACCAGCTTAG+AGG | - | chr1.3:11394243-11394262 | MS.gene56052:CDS | 40.0% | |
| TCAGGAAAAACAAAACCAGG+AGG | - | chr1.3:11395670-11395689 | MS.gene56052:intron | 40.0% | |
| TCAGTAGATGTAGGAAAAGG+AGG | - | chr1.3:11395634-11395653 | MS.gene56052:intron | 40.0% | |
| TGCGAAGACAATGGTATCAA+AGG | - | chr1.3:11396183-11396202 | MS.gene56052:intron | 40.0% | |
| TGGGTGTGAAAATCCAAAAG+CGG | + | chr1.3:11393681-11393700 | None:intergenic | 40.0% | |
| TTCCACAGGATCATGTTGTT+TGG | - | chr1.3:11396589-11396608 | MS.gene56052:CDS | 40.0% | |
| TTCTTCTGTTCCTTCCTTGA+TGG | + | chr1.3:11396133-11396152 | None:intergenic | 40.0% | |
| TTGTCAGTTGTCACTCATTC+CGG | + | chr1.3:11394676-11394695 | None:intergenic | 40.0% | |
| TTGTTAGCATTCCTCTAAGC+TGG | + | chr1.3:11394257-11394276 | None:intergenic | 40.0% | |
| ! | AAAGGCACATCAGTAGATGT+AGG | - | chr1.3:11395625-11395644 | MS.gene56052:intron | 40.0% |
| ! | CACTTCAAGTTTCATTGGGA+TGG | + | chr1.3:11395184-11395203 | None:intergenic | 40.0% |
| ! | GGCAAAAGGTGTGAAGAAAT+TGG | - | chr1.3:11396335-11396354 | MS.gene56052:intron | 40.0% |
| ! | GTTATGAAAGGAACCGCTTT+TGG | - | chr1.3:11393665-11393684 | MS.gene56052:CDS | 40.0% |
| ! | TCCACAGGATCATGTTGTTT+GGG | - | chr1.3:11396590-11396609 | MS.gene56052:CDS | 40.0% |
| ! | TTTGGGTTTCCTTACCATTG+TGG | - | chr1.3:11393966-11393985 | MS.gene56052:CDS | 40.0% |
| !! | CATTTGAGTTGTGGGAAGTT+TGG | + | chr1.3:11393583-11393602 | None:intergenic | 40.0% |
| !!! | GCTTTTGGCATTTGAGTTGT+GGG | + | chr1.3:11393591-11393610 | None:intergenic | 40.0% |
| AAAACGGGTACATACAGTGG+CGG | - | chr1.3:11394436-11394455 | MS.gene56052:intron | 45.0% | |
| AATCGGCCGCCAAAAATGAA+AGG | - | chr1.3:11394694-11394713 | MS.gene56052:intron | 45.0% | |
| ACCCAAACAACATGATCCTG+TGG | + | chr1.3:11396594-11396613 | None:intergenic | 45.0% | |
| ACCGATTATGTATCCAGTGG+CGG | + | chr1.3:11394941-11394960 | None:intergenic | 45.0% | |
| ACCTCAGTGAATGTTGGCAA+AGG | - | chr1.3:11395694-11395713 | MS.gene56052:intron | 45.0% | |
| ACCTTTGCCAACATTCACTG+AGG | + | chr1.3:11395698-11395717 | None:intergenic | 45.0% | |
| ACTCCCTTCTCTCTCTTAGT+TGG | + | chr1.3:11394609-11394628 | None:intergenic | 45.0% | |
| CAAGTGCTCAATGTTCAACC+TGG | - | chr1.3:11396543-11396562 | MS.gene56052:intron | 45.0% | |
| CGATCCAACTAAGAGAGAGA+AGG | - | chr1.3:11394602-11394621 | MS.gene56052:intron | 45.0% | |
| CTTCCATCAACACCTTCCAA+AGG | + | chr1.3:11396456-11396475 | None:intergenic | 45.0% | |
| GATGCAGGAAAAACAAAGCC+AGG | - | chr1.3:11395730-11395749 | MS.gene56052:intron | 45.0% | |
| GCAGTGAATGTTGGAAAAGG+TGG | - | chr1.3:11395760-11395779 | MS.gene56052:intron | 45.0% | |
| GGAGAACTTCTTAGCCTCTT+AGG | - | chr1.3:11393987-11394006 | MS.gene56052:CDS | 45.0% | |
| GGCTAAGAAGTTCTCCACAA+TGG | + | chr1.3:11393983-11394002 | None:intergenic | 45.0% | |
| GGTGGAACAGCAGTTAATGT+TGG | - | chr1.3:11395817-11395836 | MS.gene56052:intron | 45.0% | |
| GGTGGAGTTCATGTAAATGC+AGG | - | chr1.3:11395778-11395797 | MS.gene56052:intron | 45.0% | |
| GTGAATAAGCGAGGAATACG+AGG | - | chr1.3:11394094-11394113 | MS.gene56052:CDS | 45.0% | |
| GTTCATGCAGGAAAAGGAAG+AGG | - | chr1.3:11395856-11395875 | MS.gene56052:intron | 45.0% | |
| GTTTACTCTGTGCCTTTGGA+AGG | - | chr1.3:11396441-11396460 | MS.gene56052:CDS | 45.0% | |
| TCACCATAGGTGAATAAGCG+AGG | - | chr1.3:11394085-11394104 | MS.gene56052:CDS | 45.0% | |
| TCAGTGAATGTTGGCAAAGG+TGG | - | chr1.3:11395697-11395716 | MS.gene56052:intron | 45.0% | |
| TCCGCCACTGGATACATAAT+CGG | - | chr1.3:11394937-11394956 | MS.gene56052:intron | 45.0% | |
| TGTGGAAGGAAGTGACAAAC+TGG | + | chr1.3:11396576-11396595 | None:intergenic | 45.0% | |
| TTTGAACGGGTCGAGTTCAT+TGG | + | chr1.3:11395240-11395259 | None:intergenic | 45.0% | |
| ! | AGGAGATCTGTGATGGCTTT+TGG | + | chr1.3:11393606-11393625 | None:intergenic | 45.0% |
| ! | AGTTTGTCACTTCCTTCCAC+AGG | - | chr1.3:11396575-11396594 | MS.gene56052:intron | 45.0% |
| ! | ATTATGCATGAGTTGGGGCT+AGG | + | chr1.3:11394380-11394399 | None:intergenic | 45.0% |
| !! | AGGAAGCATTAAAGTCTGGG+TGG | - | chr1.3:11394805-11394824 | MS.gene56052:intron | 45.0% |
| !! | CGATTATGTGTGGGTTGGTT+TGG | + | chr1.3:11395464-11395483 | None:intergenic | 45.0% |
| !! | GGAAGCATTAAAGTCTGGGT+GGG | - | chr1.3:11394806-11394825 | MS.gene56052:intron | 45.0% |
| !! | GGAGGTGTGAATGTTGATTC+AGG | - | chr1.3:11395652-11395671 | MS.gene56052:intron | 45.0% |
| !! | GTATAGGAGTGTTCTCGAGT+CGG | - | chr1.3:11395091-11395110 | MS.gene56052:intron | 45.0% |
| !!! | GGCTTTTGGCATTTGAGTTG+TGG | + | chr1.3:11393592-11393611 | None:intergenic | 45.0% |
| !! | AAAATAAAAAATAAAATCTT+AGG | + | chr1.3:11393788-11393807 | None:intergenic | 5.0% |
| !! | TTTATTTATGAATATTAAAA+AGG | + | chr1.3:11393471-11393490 | None:intergenic | 5.0% |
| !!! | AAAAAAATTATATTTTTTTG+GGG | - | chr1.3:11394882-11394901 | MS.gene56052:intron | 5.0% |
| !!! | ATTTTATTAAATAAAATGAA+CGG | - | chr1.3:11394164-11394183 | MS.gene56052:CDS | 5.0% |
| !!! | GAAAAAAATTATATTTTTTT+GGG | - | chr1.3:11394881-11394900 | MS.gene56052:intron | 5.0% |
| ACATTCACTGAGGTTCCTCC+TGG | + | chr1.3:11395688-11395707 | None:intergenic | 50.0% | |
| ACATTCACTGCTGTTCCACC+TGG | + | chr1.3:11395751-11395770 | None:intergenic | 50.0% | |
| CAGTGAAAATGGAGGTGACG+CGG | - | chr1.3:11394650-11394669 | MS.gene56052:intron | 50.0% | |
| CATCGCGATTATGTGTGGGT+TGG | + | chr1.3:11395469-11395488 | None:intergenic | 50.0% | |
| GATTATGTATCCAGTGGCGG+AGG | + | chr1.3:11394938-11394957 | None:intergenic | 50.0% | |
| GCAGGAAAAACAAAGCCAGG+TGG | - | chr1.3:11395733-11395752 | MS.gene56052:intron | 50.0% | |
| GCAGGTAAAGGAAAACCAGG+TGG | - | chr1.3:11395796-11395815 | MS.gene56052:intron | 50.0% | |
| GGAGGAACCTCAGTGAATGT+TGG | - | chr1.3:11395688-11395707 | MS.gene56052:intron | 50.0% | |
| GGTAAAGGAAAACCAGGTGG+TGG | - | chr1.3:11395799-11395818 | MS.gene56052:intron | 50.0% | |
| GGTGGAACAGCAGTGAATGT+TGG | - | chr1.3:11395751-11395770 | MS.gene56052:intron | 50.0% | |
| GTTTGTAGGTCGCGTAACAG+AGG | - | chr1.3:11394730-11394749 | MS.gene56052:intron | 50.0% | |
| TGACAAACTGGAACAGTCCC+AGG | + | chr1.3:11396564-11396583 | None:intergenic | 50.0% | |
| TTAACTGCTGTTCCACCACC+TGG | + | chr1.3:11395814-11395833 | None:intergenic | 50.0% | |
| TTCAGGTGGTAAGGCAGCAT+TGG | + | chr1.3:11393547-11393566 | None:intergenic | 50.0% | |
| ! | AGGCTTATATGGGCTGAGGT+GGG | + | chr1.3:11394918-11394937 | None:intergenic | 50.0% |
| ! | GATTCGGTCGGGTAAGAGTT+TGG | - | chr1.3:11395544-11395563 | MS.gene56052:intron | 50.0% |
| ! | GGTGGTGTCAATGTTCATGC+AGG | - | chr1.3:11395844-11395863 | MS.gene56052:intron | 50.0% |
| ! | TAAGAGAGAGAAGGGAGTGC+CGG | - | chr1.3:11394611-11394630 | MS.gene56052:intron | 50.0% |
| ! | TCACCTCCATTTTCACTGCC+CGG | + | chr1.3:11394648-11394667 | None:intergenic | 50.0% |
| !! | GTGCCTTTGGAAGGTGTTGA+TGG | - | chr1.3:11396450-11396469 | MS.gene56052:CDS | 50.0% |
| !!! | TATTTTTTTGGGGTGGGCCG+TGG | - | chr1.3:11394892-11394911 | MS.gene56052:intron | 50.0% |
| AGGTCGCGTAACAGAGGAAG+AGG | - | chr1.3:11394736-11394755 | MS.gene56052:intron | 55.0% | |
| GGTGGAGTCCATGTTGATGC+AGG | - | chr1.3:11395715-11395734 | MS.gene56052:intron | 55.0% | |
| TGGGATGGACCGAACCAGAA+TGG | + | chr1.3:11395169-11395188 | None:intergenic | 55.0% | |
| ! | CCAGTGGCGGAGGCTTATAT+GGG | + | chr1.3:11394928-11394947 | None:intergenic | 55.0% |
| ! | GAGGCTTATATGGGCTGAGG+TGG | + | chr1.3:11394919-11394938 | None:intergenic | 55.0% |
| ! | TCCAGTGGCGGAGGCTTATA+TGG | + | chr1.3:11394929-11394948 | None:intergenic | 55.0% |
| !! | TAGGAGTGTTCTCGAGTCGG+AGG | - | chr1.3:11395094-11395113 | MS.gene56052:intron | 55.0% |
| ACGCCGGGCAGTGAAAATGG+AGG | - | chr1.3:11394642-11394661 | MS.gene56052:intron | 60.0% | |
| CCCATATAAGCCTCCGCCAC+TGG | - | chr1.3:11394925-11394944 | MS.gene56052:intron | 60.0% | |
| GAAAATGGAGGTGACGCGGC+CGG | - | chr1.3:11394654-11394673 | MS.gene56052:intron | 60.0% | |
| TCGACGCCGGGCAGTGAAAA+TGG | - | chr1.3:11394639-11394658 | MS.gene56052:intron | 60.0% | |
| ! | ATATGGGCTGAGGTGGGCCA+CGG | + | chr1.3:11394912-11394931 | None:intergenic | 60.0% |
| ! | GCGGAGGCTTATATGGGCTG+AGG | + | chr1.3:11394922-11394941 | None:intergenic | 60.0% |
| !! | GAGAGAAGGGAGTGCCGGAG+TGG | - | chr1.3:11394616-11394635 | MS.gene56052:intron | 65.0% |
| ! | AGTGCCGGAGTGGTCGACGC+CGG | - | chr1.3:11394626-11394645 | MS.gene56052:intron | 70.0% |
| GTGCCGGAGTGGTCGACGCC+GGG | - | chr1.3:11394627-11394646 | MS.gene56052:intron | 75.0% | |
| !! | CTGCCCGGCGTCGACCACTC+CGG | + | chr1.3:11394633-11394652 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 11393380 | 11396623 | 11393380 | ID=MS.gene56052 |
| chr1.3 | mRNA | 11393380 | 11396623 | 11393380 | ID=MS.gene56052.t1;Parent=MS.gene56052 |
| chr1.3 | exon | 11396585 | 11396623 | 11396585 | ID=MS.gene56052.t1.exon1;Parent=MS.gene56052.t1 |
| chr1.3 | CDS | 11396585 | 11396623 | 11396585 | ID=cds.MS.gene56052.t1;Parent=MS.gene56052.t1 |
| chr1.3 | exon | 11396370 | 11396475 | 11396370 | ID=MS.gene56052.t1.exon2;Parent=MS.gene56052.t1 |
| chr1.3 | CDS | 11396370 | 11396475 | 11396370 | ID=cds.MS.gene56052.t1;Parent=MS.gene56052.t1 |
| chr1.3 | exon | 11393380 | 11394392 | 11393380 | ID=MS.gene56052.t1.exon3;Parent=MS.gene56052.t1 |
| chr1.3 | CDS | 11393380 | 11394392 | 11393380 | ID=cds.MS.gene56052.t1;Parent=MS.gene56052.t1 |
| Gene Sequence |
| Protein sequence |
