Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56300.t1 | XP_003598322.1 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 9.50E-140 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56300.t1 | Q9SN26 | 53.1 | 260 | 95 | 5 | 1 | 259 | 1 | 234 | 5.8e-61 | 235.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56300.t1 | G7IVD5 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 6.9e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene56300 | 0.820727 | 5.89E-53 | -1.69E-46 |
| MS.gene049419 | MS.gene56300 | -0.829893 | 3.99E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene56300 | 0.820842 | 5.54E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene56300 | 0.848529 | 5.78E-60 | -1.69E-46 |
| MS.gene04998 | MS.gene56300 | 0.803532 | 3.33E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene56300 | 0.82192 | 3.12E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene56300 | 0.821239 | 4.49E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene56300 | 0.801338 | 9.44E-49 | -1.69E-46 |
| MS.gene051184 | MS.gene56300 | 0.800012 | 1.76E-48 | -1.69E-46 |
| MS.gene051541 | MS.gene56300 | 0.803786 | 2.95E-49 | -1.69E-46 |
| MS.gene052052 | MS.gene56300 | 0.81857 | 1.83E-52 | -1.69E-46 |
| MS.gene052118 | MS.gene56300 | 0.814377 | 1.59E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene56300 | 0.818874 | 1.56E-52 | -1.69E-46 |
| MS.gene052493 | MS.gene56300 | 0.817698 | 2.88E-52 | -1.69E-46 |
| MS.gene052533 | MS.gene56300 | 0.828333 | 9.53E-55 | -1.69E-46 |
| MS.gene053298 | MS.gene56300 | 0.838627 | 2.57E-57 | -1.69E-46 |
| MS.gene053726 | MS.gene56300 | 0.818232 | 2.18E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene56300 | 0.824839 | 6.49E-54 | -1.69E-46 |
| MS.gene05439 | MS.gene56300 | 0.801875 | 7.32E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene56300 | 0.82056 | 6.43E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene56300 | 0.882652 | 8.70E-71 | -1.69E-46 |
| MS.gene054893 | MS.gene56300 | 0.874953 | 4.51E-68 | -1.69E-46 |
| MS.gene055864 | MS.gene56300 | 0.83397 | 3.93E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene56300 | 0.810606 | 1.06E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene56300 | 0.808191 | 3.50E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene56300 | 0.832027 | 1.19E-55 | -1.69E-46 |
| MS.gene057155 | MS.gene56300 | 0.818274 | 2.14E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene56300 | 0.800851 | 1.19E-48 | -1.69E-46 |
| MS.gene057622 | MS.gene56300 | 0.820441 | 6.85E-53 | -1.69E-46 |
| MS.gene058008 | MS.gene56300 | 0.806007 | 1.01E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene56300 | 0.816588 | 5.12E-52 | -1.69E-46 |
| MS.gene058095 | MS.gene56300 | 0.812251 | 4.66E-51 | -1.69E-46 |
| MS.gene058159 | MS.gene56300 | 0.837364 | 5.43E-57 | -1.69E-46 |
| MS.gene058429 | MS.gene56300 | 0.832393 | 9.70E-56 | -1.69E-46 |
| MS.gene05878 | MS.gene56300 | 0.812859 | 3.43E-51 | -1.69E-46 |
| MS.gene059144 | MS.gene56300 | 0.805801 | 1.12E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene56300 | 0.815092 | 1.10E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene56300 | 0.830761 | 2.45E-55 | -1.69E-46 |
| MS.gene05985 | MS.gene56300 | -0.814912 | 1.21E-51 | -1.69E-46 |
| MS.gene060259 | MS.gene56300 | 0.881029 | 3.37E-70 | -1.69E-46 |
| MS.gene060412 | MS.gene56300 | 0.817144 | 3.84E-52 | -1.69E-46 |
| MS.gene060413 | MS.gene56300 | 0.804158 | 2.47E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene56300 | 0.80389 | 2.81E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene56300 | 0.807877 | 4.08E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene56300 | 0.807118 | 5.91E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene56300 | 0.826551 | 2.55E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene56300 | 0.809467 | 1.87E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene56300 | 0.823303 | 1.49E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene56300 | 0.841479 | 4.64E-58 | -1.69E-46 |
| MS.gene061188 | MS.gene56300 | 0.809038 | 2.30E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56300.t1 | MTR_3g010290 | 97.297 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 0.0 | 524 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56300.t1 | AT4G10170 | 53.077 | 260 | 95 | 5 | 1 | 259 | 1 | 234 | 2.34e-81 | 245 |
| MS.gene56300.t1 | AT4G10170 | 53.077 | 260 | 95 | 5 | 1 | 259 | 1 | 234 | 2.34e-81 | 245 |
| MS.gene56300.t1 | AT1G33475 | 43.561 | 264 | 117 | 7 | 1 | 260 | 1 | 236 | 1.71e-60 | 192 |
| MS.gene56300.t1 | AT1G33475 | 55.357 | 56 | 23 | 1 | 1 | 54 | 1 | 56 | 8.45e-16 | 73.2 |
| MS.gene56300.t1 | AT1G33475 | 43.956 | 91 | 39 | 2 | 171 | 260 | 55 | 134 | 2.38e-14 | 69.3 |
Find 61 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTTTGCAAAAGGATA+TGG | 0.148205 | 3.1:-5411856 | MS.gene56300:CDS |
| AAGGCCTGATTCAGGAAATT+TGG | 0.252155 | 3.1:-5411910 | MS.gene56300:CDS |
| TTCAACCAAAGCCCCTTTAT+TGG | 0.253713 | 3.1:-5412033 | MS.gene56300:CDS |
| TTTCACATAGTGGTAGTAAT+TGG | 0.275380 | 3.1:-5412136 | MS.gene56300:CDS |
| AATGAGAGATGTTGAGTTAG+AGG | 0.307965 | 3.1:-5411961 | MS.gene56300:CDS |
| TCAACCAAAGCCCCTTTATT+GGG | 0.328565 | 3.1:-5412032 | MS.gene56300:CDS |
| GACGAAACTTCCTCGACATT+TGG | 0.372647 | 3.1:-5412110 | MS.gene56300:CDS |
| ATTTCGAGACAATAGGTAAA+AGG | 0.375196 | 3.1:-5412379 | MS.gene56300:CDS |
| CCGTCCAAATTTCCTGAATC+AGG | 0.383998 | 3.1:+5411906 | None:intergenic |
| AGTTTACGTTCAAGAGAAAC+TGG | 0.388560 | 3.1:-5412198 | MS.gene56300:CDS |
| AGAGGATCAAGGCCTGATTC+AGG | 0.392539 | 3.1:-5411918 | MS.gene56300:CDS |
| ATTATTGTTGTGTTTCTAAA+GGG | 0.397888 | 3.1:-5412496 | MS.gene56300:CDS |
| ACGTAAACTGAATTCATGTT+TGG | 0.402139 | 3.1:+5412212 | None:intergenic |
| ATTTGTCCATTCAAATTACT+TGG | 0.402162 | 3.1:+5412068 | None:intergenic |
| TACATCTTCTTCTTTGCAAA+AGG | 0.409637 | 3.1:-5411862 | MS.gene56300:CDS |
| AGATGAAGGTCTTGGTAACT+TGG | 0.412330 | 3.1:-5412309 | MS.gene56300:CDS |
| TCTTCTTTGCAAAAGGATAT+GGG | 0.415200 | 3.1:-5411855 | MS.gene56300:CDS |
| TAGCTAGAACAATGCGTACT+TGG | 0.417134 | 3.1:+5411781 | None:intergenic |
| CATTATTGTTGTGTTTCTAA+AGG | 0.425949 | 3.1:-5412497 | MS.gene56300:CDS |
| CTCAAAACGTCCGTAAGAAA+TGG | 0.447780 | 3.1:-5411809 | MS.gene56300:CDS |
| CTCCACCACTATACGCATAC+AGG | 0.453254 | 3.1:+5412465 | None:intergenic |
| TACTTCACAATTGTAGATGA+AGG | 0.455781 | 3.1:-5412323 | MS.gene56300:CDS |
| CCATTCAAATTACTTGGTGA+TGG | 0.462379 | 3.1:+5412074 | None:intergenic |
| CACAGCCTTGTGCTTGGAGG+CGG | 0.462743 | 3.1:-5412423 | MS.gene56300:CDS |
| ACAATTGTAGATGAAGGTCT+TGG | 0.466801 | 3.1:-5412317 | MS.gene56300:CDS |
| ACAATAGGTAAAAGGACTTA+CGG | 0.467377 | 3.1:-5412371 | MS.gene56300:CDS |
| CTTGGCGCCACCATTTCTTA+CGG | 0.469508 | 3.1:+5411799 | None:intergenic |
| CAATAGGTAAAAGGACTTAC+GGG | 0.479243 | 3.1:-5412370 | MS.gene56300:CDS |
| TTAGAGAATGTTTCACATAG+TGG | 0.480167 | 3.1:-5412146 | MS.gene56300:CDS |
| AGGCGGTTCCTTCTTTCCAC+AGG | 0.481926 | 3.1:-5412406 | MS.gene56300:CDS |
| AAATTACTTGGTGATGGAGA+TGG | 0.492575 | 3.1:+5412080 | None:intergenic |
| TTCAGAAAGGTAGCTAGAAA+AGG | 0.498079 | 3.1:-5412251 | MS.gene56300:CDS |
| AGGTGGTATTTCGAGACAAT+AGG | 0.503747 | 3.1:-5412386 | MS.gene56300:CDS |
| GGTTCAATGAGGACGAGATC+AGG | 0.506463 | 3.1:-5411834 | MS.gene56300:CDS |
| AGGTAGCTAGAAAAGGTTCA+AGG | 0.518283 | 3.1:-5412244 | MS.gene56300:CDS |
| CACACCCTGTATGCGTATAG+TGG | 0.522863 | 3.1:-5412470 | MS.gene56300:CDS |
| CGGTTCCTTCTTTCCACAGG+TGG | 0.523709 | 3.1:-5412403 | MS.gene56300:CDS |
| CCATCACCAAGTAATTTGAA+TGG | 0.529421 | 3.1:-5412074 | MS.gene56300:CDS |
| AAATACCACCTGTGGAAAGA+AGG | 0.529530 | 3.1:+5412398 | None:intergenic |
| GTGATCAGATTACGAATGAC+AGG | 0.539134 | 3.1:+5412173 | None:intergenic |
| ACTTCCTCGACATTTGGCAT+TGG | 0.540398 | 3.1:-5412104 | MS.gene56300:CDS |
| GCAAGAGAAGAAGAAAGTAA+AGG | 0.545957 | 3.1:-5411997 | MS.gene56300:CDS |
| TGTCACAGCCTTGTGCTTGG+AGG | 0.553859 | 3.1:-5412426 | MS.gene56300:CDS |
| GAATGTCACAGCCTTGTGCT+TGG | 0.555477 | 3.1:-5412429 | MS.gene56300:CDS |
| AATCTACAGATAGAGGATCA+AGG | 0.570567 | 3.1:-5411929 | MS.gene56300:CDS |
| CACTATACGCATACAGGGTG+TGG | 0.574835 | 3.1:+5412471 | None:intergenic |
| GGTAGCTAGAAAAGGTTCAA+GGG | 0.580926 | 3.1:-5412243 | MS.gene56300:CDS |
| AAAACGTCCGTAAGAAATGG+TGG | 0.598377 | 3.1:-5411806 | MS.gene56300:CDS |
| TTGTCTCGAAATACCACCTG+TGG | 0.605879 | 3.1:+5412390 | None:intergenic |
| AGGAACCGCCTCCAAGCACA+AGG | 0.610638 | 3.1:+5412418 | None:intergenic |
| GTAGCTAGAAAAGGTTCAAG+GGG | 0.613162 | 3.1:-5412242 | MS.gene56300:CDS |
| AAGATGTAGCAGCACCACCT+TGG | 0.620183 | 3.1:+5411877 | None:intergenic |
| AATTTGGACGGTATTAGCCA+AGG | 0.623716 | 3.1:-5411894 | MS.gene56300:CDS |
| TGTCAGAGATGAATTCAGAA+AGG | 0.624051 | 3.1:-5412264 | MS.gene56300:CDS |
| CCTGATTCAGGAAATTTGGA+CGG | 0.627032 | 3.1:-5411906 | MS.gene56300:CDS |
| TCCACCACTATACGCATACA+GGG | 0.629092 | 3.1:+5412466 | None:intergenic |
| GTAAATGATCAGATCAGGCA+CGG | 0.633105 | 3.1:+5411625 | None:intergenic |
| ACCCTGTATGCGTATAGTGG+TGG | 0.642922 | 3.1:-5412467 | MS.gene56300:CDS |
| TGGACCAATGCCAAATGTCG+AGG | 0.656618 | 3.1:+5412100 | None:intergenic |
| TTGGACGGTATTAGCCAAGG+TGG | 0.682644 | 3.1:-5411891 | MS.gene56300:CDS |
| AAAAGGATATGGGTTCAATG+AGG | 0.721400 | 3.1:-5411845 | MS.gene56300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATAATATTATTTGTCATC+TGG | - | chr3.1:5412416-5412435 | MS.gene56300:CDS | 20.0% |
| !!! | ATTATTGTTGTGTTTCTAAA+GGG | - | chr3.1:5411663-5411682 | MS.gene56300:intron | 20.0% |
| ! | AATACGATAACGATCAAATT+CGG | + | chr3.1:5412499-5412518 | None:intergenic | 25.0% |
| ! | ATTTGTCCATTCAAATTACT+TGG | + | chr3.1:5412094-5412113 | None:intergenic | 25.0% |
| ! | CATAAAAAATCTACAGATAG+AGG | - | chr3.1:5412223-5412242 | MS.gene56300:CDS | 25.0% |
| !! | CATTATTGTTGTGTTTCTAA+AGG | - | chr3.1:5411662-5411681 | MS.gene56300:intron | 25.0% |
| !! | TACTAGATTTTCCCAATAAA+GGG | + | chr3.1:5412141-5412160 | None:intergenic | 25.0% |
| !! | TTACTAGATTTTCCCAATAA+AGG | + | chr3.1:5412142-5412161 | None:intergenic | 25.0% |
| ACAATAGGTAAAAGGACTTA+CGG | - | chr3.1:5411788-5411807 | MS.gene56300:CDS | 30.0% | |
| ACGTAAACTGAATTCATGTT+TGG | + | chr3.1:5411950-5411969 | None:intergenic | 30.0% | |
| ATTTCGAGACAATAGGTAAA+AGG | - | chr3.1:5411780-5411799 | MS.gene56300:CDS | 30.0% | |
| GAATTTGATCGTTATCGTAT+TGG | - | chr3.1:5412498-5412517 | MS.gene56300:CDS | 30.0% | |
| TACATCTTCTTCTTTGCAAA+AGG | - | chr3.1:5412297-5412316 | MS.gene56300:CDS | 30.0% | |
| TACTTCACAATTGTAGATGA+AGG | - | chr3.1:5411836-5411855 | MS.gene56300:CDS | 30.0% | |
| TCTTCTTTGCAAAAGGATAT+GGG | - | chr3.1:5412304-5412323 | MS.gene56300:CDS | 30.0% | |
| TTAGAGAATGTTTCACATAG+TGG | - | chr3.1:5412013-5412032 | MS.gene56300:CDS | 30.0% | |
| TTCTTCTTTGCAAAAGGATA+TGG | - | chr3.1:5412303-5412322 | MS.gene56300:CDS | 30.0% | |
| TTTCACATAGTGGTAGTAAT+TGG | - | chr3.1:5412023-5412042 | MS.gene56300:CDS | 30.0% | |
| ! | ACTAGATTTTCCCAATAAAG+GGG | + | chr3.1:5412140-5412159 | None:intergenic | 30.0% |
| AAAAGGATATGGGTTCAATG+AGG | - | chr3.1:5412314-5412333 | MS.gene56300:CDS | 35.0% | |
| AATCTACAGATAGAGGATCA+AGG | - | chr3.1:5412230-5412249 | MS.gene56300:CDS | 35.0% | |
| AATGAGAGATGTTGAGTTAG+AGG | - | chr3.1:5412198-5412217 | MS.gene56300:CDS | 35.0% | |
| ACAATTGTAGATGAAGGTCT+TGG | - | chr3.1:5411842-5411861 | MS.gene56300:CDS | 35.0% | |
| AGTTTACGTTCAAGAGAAAC+TGG | - | chr3.1:5411961-5411980 | MS.gene56300:CDS | 35.0% | |
| ATCGAATGCATGATATACCA+CGG | + | chr3.1:5412453-5412472 | None:intergenic | 35.0% | |
| CAATAGGTAAAAGGACTTAC+GGG | - | chr3.1:5411789-5411808 | MS.gene56300:CDS | 35.0% | |
| CCATCACCAAGTAATTTGAA+TGG | - | chr3.1:5412085-5412104 | MS.gene56300:CDS | 35.0% | |
| GCAAGAGAAGAAGAAAGTAA+AGG | - | chr3.1:5412162-5412181 | MS.gene56300:CDS | 35.0% | |
| TGTCAGAGATGAATTCAGAA+AGG | - | chr3.1:5411895-5411914 | MS.gene56300:CDS | 35.0% | |
| TTCAGAAAGGTAGCTAGAAA+AGG | - | chr3.1:5411908-5411927 | MS.gene56300:CDS | 35.0% | |
| ! | ATTTCTTACGGACGTTTTGA+GGG | + | chr3.1:5412351-5412370 | None:intergenic | 35.0% |
| ! | CCATTCAAATTACTTGGTGA+TGG | + | chr3.1:5412088-5412107 | None:intergenic | 35.0% |
| !! | AAATTACTTGGTGATGGAGA+TGG | + | chr3.1:5412082-5412101 | None:intergenic | 35.0% |
| !! | CTTGGTAGTTCTTCAGTTTT+TGG | - | chr3.1:5411868-5411887 | MS.gene56300:CDS | 35.0% |
| AAAACGTCCGTAAGAAATGG+TGG | - | chr3.1:5412353-5412372 | MS.gene56300:CDS | 40.0% | |
| AAATACCACCTGTGGAAAGA+AGG | + | chr3.1:5411764-5411783 | None:intergenic | 40.0% | |
| AAGGCCTGATTCAGGAAATT+TGG | - | chr3.1:5412249-5412268 | MS.gene56300:CDS | 40.0% | |
| AATTTGGACGGTATTAGCCA+AGG | - | chr3.1:5412265-5412284 | MS.gene56300:CDS | 40.0% | |
| AGGTAGCTAGAAAAGGTTCA+AGG | - | chr3.1:5411915-5411934 | MS.gene56300:CDS | 40.0% | |
| AGGTGGTATTTCGAGACAAT+AGG | - | chr3.1:5411773-5411792 | MS.gene56300:CDS | 40.0% | |
| ATCTGGTTAGTAATATGCCG+TGG | - | chr3.1:5412433-5412452 | MS.gene56300:CDS | 40.0% | |
| CCTGATTCAGGAAATTTGGA+CGG | - | chr3.1:5412253-5412272 | MS.gene56300:CDS | 40.0% | |
| CTCAAAACGTCCGTAAGAAA+TGG | - | chr3.1:5412350-5412369 | MS.gene56300:CDS | 40.0% | |
| GGTAGCTAGAAAAGGTTCAA+GGG | - | chr3.1:5411916-5411935 | MS.gene56300:CDS | 40.0% | |
| GTAGCTAGAAAAGGTTCAAG+GGG | - | chr3.1:5411917-5411936 | MS.gene56300:CDS | 40.0% | |
| GTGATCAGATTACGAATGAC+AGG | + | chr3.1:5411989-5412008 | None:intergenic | 40.0% | |
| TAGCTAGAACAATGCGTACT+TGG | + | chr3.1:5412381-5412400 | None:intergenic | 40.0% | |
| TCAACCAAAGCCCCTTTATT+GGG | - | chr3.1:5412127-5412146 | MS.gene56300:CDS | 40.0% | |
| TTCAACCAAAGCCCCTTTAT+TGG | - | chr3.1:5412126-5412145 | MS.gene56300:CDS | 40.0% | |
| ! | AGATGAAGGTCTTGGTAACT+TGG | - | chr3.1:5411850-5411869 | MS.gene56300:CDS | 40.0% |
| ! | CATTTCTTACGGACGTTTTG+AGG | + | chr3.1:5412352-5412371 | None:intergenic | 40.0% |
| ! | TTTTCCCAATAAAGGGGCTT+TGG | + | chr3.1:5412134-5412153 | None:intergenic | 40.0% |
| !! | AAGGACTTACGGGTTTTTAG+TGG | - | chr3.1:5411799-5411818 | MS.gene56300:CDS | 40.0% |
| !!! | TACGGGTTTTTAGTGGAAGA+TGG | - | chr3.1:5411806-5411825 | MS.gene56300:CDS | 40.0% |
| ACTTCCTCGACATTTGGCAT+TGG | - | chr3.1:5412055-5412074 | MS.gene56300:CDS | 45.0% | |
| CCGTCCAAATTTCCTGAATC+AGG | + | chr3.1:5412256-5412275 | None:intergenic | 45.0% | |
| GACGAAACTTCCTCGACATT+TGG | - | chr3.1:5412049-5412068 | MS.gene56300:CDS | 45.0% | |
| TCCACCACTATACGCATACA+GGG | + | chr3.1:5411696-5411715 | None:intergenic | 45.0% | |
| TTGTCTCGAAATACCACCTG+TGG | + | chr3.1:5411772-5411791 | None:intergenic | 45.0% | |
| AAGATGTAGCAGCACCACCT+TGG | + | chr3.1:5412285-5412304 | None:intergenic | 50.0% | |
| ACCCTGTATGCGTATAGTGG+TGG | - | chr3.1:5411692-5411711 | MS.gene56300:intron | 50.0% | |
| AGAGGATCAAGGCCTGATTC+AGG | - | chr3.1:5412241-5412260 | MS.gene56300:CDS | 50.0% | |
| CACACCCTGTATGCGTATAG+TGG | - | chr3.1:5411689-5411708 | MS.gene56300:intron | 50.0% | |
| CACTATACGCATACAGGGTG+TGG | + | chr3.1:5411691-5411710 | None:intergenic | 50.0% | |
| CTCCACCACTATACGCATAC+AGG | + | chr3.1:5411697-5411716 | None:intergenic | 50.0% | |
| CTTGGCGCCACCATTTCTTA+CGG | + | chr3.1:5412363-5412382 | None:intergenic | 50.0% | |
| GGTTCAATGAGGACGAGATC+AGG | - | chr3.1:5412325-5412344 | MS.gene56300:CDS | 50.0% | |
| TGGACCAATGCCAAATGTCG+AGG | + | chr3.1:5412062-5412081 | None:intergenic | 50.0% | |
| TTGGACGGTATTAGCCAAGG+TGG | - | chr3.1:5412268-5412287 | MS.gene56300:CDS | 50.0% | |
| ! | GAATGTCACAGCCTTGTGCT+TGG | - | chr3.1:5411730-5411749 | MS.gene56300:intron | 50.0% |
| AGGCGGTTCCTTCTTTCCAC+AGG | - | chr3.1:5411753-5411772 | MS.gene56300:intron | 55.0% | |
| CGGTTCCTTCTTTCCACAGG+TGG | - | chr3.1:5411756-5411775 | MS.gene56300:intron | 55.0% | |
| ! | TGTCACAGCCTTGTGCTTGG+AGG | - | chr3.1:5411733-5411752 | MS.gene56300:intron | 55.0% |
| AGGAACCGCCTCCAAGCACA+AGG | + | chr3.1:5411744-5411763 | None:intergenic | 60.0% | |
| ! | CACAGCCTTGTGCTTGGAGG+CGG | - | chr3.1:5411736-5411755 | MS.gene56300:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 5411638 | 5412543 | 5411638 | ID=MS.gene56300 |
| chr3.1 | mRNA | 5411638 | 5412543 | 5411638 | ID=MS.gene56300.t1;Parent=MS.gene56300 |
| chr3.1 | exon | 5411770 | 5412543 | 5411770 | ID=MS.gene56300.t1.exon1;Parent=MS.gene56300.t1 |
| chr3.1 | CDS | 5411770 | 5412543 | 5411770 | ID=cds.MS.gene56300.t1;Parent=MS.gene56300.t1 |
| chr3.1 | exon | 5411638 | 5411652 | 5411638 | ID=MS.gene56300.t1.exon2;Parent=MS.gene56300.t1 |
| chr3.1 | CDS | 5411638 | 5411652 | 5411638 | ID=cds.MS.gene56300.t1;Parent=MS.gene56300.t1 |
| Gene Sequence |
| Protein sequence |
