Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56827.t1 | XP_013456870.2 | 93.6 | 173 | 11 | 0 | 1 | 173 | 17 | 189 | 9.80E-91 | 342.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56827.t1 | Q9AT54 | 54.3 | 173 | 79 | 0 | 1 | 173 | 12 | 184 | 3.1e-53 | 209.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56827.t1 | A0A396I980 | 93.6 | 173 | 11 | 0 | 1 | 173 | 17 | 189 | 7.1e-91 | 342.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56827.t1 | MTR_4g485620 | 94.643 | 168 | 9 | 0 | 6 | 173 | 1 | 168 | 1.13e-114 | 334 |
MS.gene56827.t1 | MTR_8g066610 | 79.769 | 173 | 35 | 0 | 1 | 173 | 16 | 188 | 1.37e-100 | 298 |
MS.gene56827.t1 | MTR_4g485630 | 53.448 | 174 | 75 | 2 | 1 | 173 | 16 | 184 | 3.32e-57 | 187 |
MS.gene56827.t1 | MTR_4g485590 | 54.913 | 173 | 52 | 1 | 1 | 173 | 16 | 162 | 1.38e-49 | 165 |
MS.gene56827.t1 | MTR_7g102550 | 44.000 | 175 | 96 | 1 | 1 | 173 | 16 | 190 | 4.58e-44 | 152 |
MS.gene56827.t1 | MTR_7g071040 | 41.860 | 172 | 100 | 0 | 2 | 173 | 25 | 196 | 4.81e-39 | 139 |
MS.gene56827.t1 | MTR_7g070660 | 40.237 | 169 | 95 | 2 | 5 | 170 | 22 | 187 | 5.05e-38 | 136 |
MS.gene56827.t1 | MTR_7g070610 | 39.157 | 166 | 101 | 0 | 5 | 170 | 24 | 189 | 4.28e-37 | 134 |
MS.gene56827.t1 | MTR_5g016660 | 37.572 | 173 | 108 | 0 | 1 | 173 | 17 | 189 | 9.62e-37 | 133 |
MS.gene56827.t1 | MTR_8g056740 | 60.169 | 118 | 18 | 1 | 23 | 140 | 3 | 91 | 4.13e-36 | 130 |
MS.gene56827.t1 | MTR_7g055710 | 37.349 | 166 | 104 | 0 | 5 | 170 | 22 | 187 | 5.16e-36 | 131 |
MS.gene56827.t1 | MTR_7g070930 | 38.953 | 172 | 105 | 0 | 2 | 173 | 22 | 193 | 5.84e-36 | 131 |
MS.gene56827.t1 | MTR_7g070910 | 38.462 | 169 | 104 | 0 | 5 | 173 | 22 | 190 | 2.94e-35 | 129 |
MS.gene56827.t1 | MTR_7g070860 | 38.922 | 167 | 100 | 2 | 5 | 170 | 18 | 183 | 3.82e-35 | 128 |
MS.gene56827.t1 | MTR_7g070740 | 38.554 | 166 | 102 | 0 | 5 | 170 | 22 | 187 | 4.85e-35 | 128 |
MS.gene56827.t1 | MTR_7g070800 | 37.952 | 166 | 103 | 0 | 5 | 170 | 17 | 182 | 2.33e-34 | 126 |
MS.gene56827.t1 | MTR_7g117405 | 38.587 | 184 | 109 | 2 | 1 | 180 | 19 | 202 | 3.89e-34 | 125 |
MS.gene56827.t1 | MTR_5g045960 | 38.857 | 175 | 104 | 2 | 2 | 173 | 17 | 191 | 1.77e-33 | 124 |
MS.gene56827.t1 | MTR_5g045970 | 36.571 | 175 | 108 | 2 | 1 | 173 | 23 | 196 | 1.49e-32 | 122 |
MS.gene56827.t1 | MTR_7g070940 | 37.870 | 169 | 105 | 0 | 5 | 173 | 20 | 188 | 2.59e-32 | 121 |
MS.gene56827.t1 | MTR_6g035295 | 37.288 | 177 | 104 | 3 | 1 | 173 | 19 | 192 | 3.41e-32 | 120 |
MS.gene56827.t1 | MTR_5g039900 | 35.838 | 173 | 111 | 0 | 1 | 173 | 20 | 192 | 3.43e-32 | 120 |
MS.gene56827.t1 | MTR_1g062380 | 36.047 | 172 | 105 | 4 | 5 | 173 | 27 | 196 | 8.16e-32 | 119 |
MS.gene56827.t1 | MTR_7g071050 | 38.095 | 168 | 93 | 3 | 5 | 169 | 24 | 183 | 3.57e-31 | 117 |
MS.gene56827.t1 | MTR_7g102520 | 36.000 | 175 | 106 | 3 | 1 | 173 | 19 | 189 | 8.94e-31 | 117 |
MS.gene56827.t1 | MTR_4g024020 | 38.418 | 177 | 105 | 3 | 1 | 173 | 16 | 192 | 1.09e-30 | 116 |
MS.gene56827.t1 | MTR_7g070810 | 35.503 | 169 | 109 | 0 | 5 | 173 | 20 | 188 | 1.13e-30 | 116 |
MS.gene56827.t1 | MTR_0536s0010 | 37.725 | 167 | 93 | 3 | 1 | 167 | 28 | 183 | 1.51e-30 | 116 |
MS.gene56827.t1 | MTR_4g117950 | 38.922 | 167 | 92 | 2 | 1 | 167 | 13 | 169 | 1.67e-30 | 115 |
MS.gene56827.t1 | MTR_7g070780 | 37.725 | 167 | 102 | 2 | 5 | 170 | 22 | 187 | 2.51e-30 | 115 |
MS.gene56827.t1 | MTR_0536s0020 | 37.870 | 169 | 90 | 3 | 5 | 170 | 29 | 185 | 2.53e-30 | 115 |
MS.gene56827.t1 | MTR_7g102560 | 37.234 | 188 | 108 | 5 | 1 | 182 | 16 | 199 | 4.60e-30 | 115 |
MS.gene56827.t1 | MTR_8g056710 | 88.525 | 61 | 6 | 1 | 114 | 173 | 18 | 78 | 1.41e-29 | 108 |
MS.gene56827.t1 | MTR_4g108250 | 37.209 | 172 | 105 | 1 | 5 | 173 | 22 | 193 | 3.03e-29 | 112 |
MS.gene56827.t1 | MTR_8g044140 | 36.601 | 153 | 96 | 1 | 21 | 173 | 4 | 155 | 9.99e-29 | 110 |
MS.gene56827.t1 | MTR_4g117980 | 33.136 | 169 | 108 | 2 | 5 | 170 | 22 | 188 | 1.21e-28 | 110 |
MS.gene56827.t1 | MTR_7g102490 | 35.263 | 190 | 114 | 5 | 1 | 182 | 16 | 204 | 3.33e-28 | 110 |
MS.gene56827.t1 | MTR_7g102460 | 36.216 | 185 | 111 | 4 | 1 | 178 | 16 | 200 | 3.82e-28 | 109 |
MS.gene56827.t1 | MTR_1g040310 | 33.526 | 173 | 114 | 1 | 1 | 173 | 22 | 193 | 5.58e-28 | 109 |
MS.gene56827.t1 | MTR_4g485640 | 35.882 | 170 | 96 | 3 | 5 | 173 | 220 | 377 | 1.00e-25 | 103 |
MS.gene56827.t1 | MTR_7g070870 | 34.320 | 169 | 108 | 1 | 5 | 173 | 30 | 195 | 1.49e-25 | 102 |
MS.gene56827.t1 | MTR_2g035020 | 31.395 | 172 | 113 | 2 | 1 | 169 | 18 | 187 | 6.10e-25 | 100 |
MS.gene56827.t1 | MTR_4g117890 | 33.133 | 166 | 102 | 2 | 5 | 170 | 24 | 180 | 1.09e-24 | 100 |
MS.gene56827.t1 | MTR_4g118000 | 34.940 | 166 | 96 | 2 | 5 | 170 | 23 | 176 | 1.77e-24 | 99.4 |
MS.gene56827.t1 | MTR_5g040030 | 33.526 | 173 | 108 | 3 | 5 | 173 | 25 | 194 | 1.35e-23 | 97.1 |
MS.gene56827.t1 | MTR_7g039570 | 32.948 | 173 | 109 | 3 | 5 | 173 | 25 | 194 | 2.82e-23 | 93.2 |
MS.gene56827.t1 | MTR_4g117960 | 31.325 | 166 | 111 | 2 | 5 | 169 | 22 | 185 | 9.54e-23 | 94.7 |
MS.gene56827.t1 | MTR_2g034990 | 29.651 | 172 | 116 | 2 | 1 | 169 | 18 | 187 | 9.57e-23 | 94.7 |
MS.gene56827.t1 | MTR_4g031800 | 30.556 | 144 | 100 | 0 | 2 | 145 | 17 | 160 | 1.34e-22 | 94.4 |
MS.gene56827.t1 | MTR_6g035265 | 33.333 | 174 | 104 | 3 | 1 | 172 | 18 | 181 | 1.59e-22 | 94.0 |
MS.gene56827.t1 | MTR_0536s0030 | 35.333 | 150 | 82 | 3 | 24 | 170 | 10 | 147 | 2.93e-22 | 92.4 |
MS.gene56827.t1 | MTR_7g113320 | 39.252 | 107 | 63 | 1 | 69 | 173 | 11 | 117 | 1.79e-21 | 87.4 |
MS.gene56827.t1 | MTR_7g012120 | 31.977 | 172 | 110 | 4 | 1 | 169 | 23 | 190 | 2.98e-21 | 90.5 |
MS.gene56827.t1 | MTR_7g102450 | 31.792 | 173 | 106 | 2 | 1 | 173 | 18 | 178 | 4.95e-21 | 89.7 |
MS.gene56827.t1 | MTR_5g029800 | 27.326 | 172 | 116 | 2 | 1 | 169 | 18 | 183 | 2.08e-19 | 85.1 |
MS.gene56827.t1 | MTR_6g035185 | 30.952 | 168 | 111 | 2 | 5 | 169 | 22 | 187 | 2.34e-19 | 85.1 |
MS.gene56827.t1 | MTR_8g032950 | 31.288 | 163 | 110 | 1 | 5 | 167 | 23 | 183 | 1.37e-18 | 82.8 |
MS.gene56827.t1 | MTR_5g067170 | 27.778 | 162 | 109 | 2 | 5 | 163 | 22 | 178 | 4.51e-17 | 78.6 |
MS.gene56827.t1 | MTR_5g087620 | 28.877 | 187 | 119 | 6 | 1 | 176 | 17 | 200 | 4.84e-16 | 75.5 |
MS.gene56827.t1 | MTR_7g470610 | 43.548 | 62 | 35 | 0 | 109 | 170 | 1 | 62 | 7.74e-14 | 68.6 |
MS.gene56827.t1 | MTR_7g070583 | 43.548 | 62 | 35 | 0 | 109 | 170 | 1 | 62 | 7.74e-14 | 68.6 |
MS.gene56827.t1 | MTR_7g470590 | 34.951 | 103 | 66 | 1 | 5 | 106 | 22 | 124 | 1.50e-12 | 62.0 |
MS.gene56827.t1 | MTR_7g070570 | 34.951 | 103 | 66 | 1 | 5 | 106 | 22 | 124 | 1.50e-12 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56827.t1 | AT4G34135 | 50.802 | 187 | 82 | 3 | 1 | 178 | 18 | 203 | 3.65e-61 | 193 |
MS.gene56827.t1 | AT4G34135 | 50.802 | 187 | 82 | 3 | 1 | 178 | 18 | 203 | 8.12e-60 | 194 |
MS.gene56827.t1 | AT4G34131 | 50.794 | 189 | 82 | 4 | 1 | 179 | 17 | 204 | 1.19e-58 | 191 |
MS.gene56827.t1 | AT4G34138 | 49.444 | 180 | 78 | 3 | 1 | 170 | 18 | 194 | 2.70e-55 | 182 |
MS.gene56827.t1 | AT2G15490 | 46.893 | 177 | 86 | 2 | 1 | 169 | 14 | 190 | 4.51e-54 | 173 |
MS.gene56827.t1 | AT2G15490 | 46.961 | 181 | 88 | 2 | 1 | 173 | 14 | 194 | 3.04e-52 | 174 |
MS.gene56827.t1 | AT2G15490 | 46.961 | 181 | 88 | 2 | 1 | 173 | 14 | 194 | 3.69e-52 | 174 |
MS.gene56827.t1 | AT2G15480 | 46.409 | 181 | 89 | 2 | 1 | 173 | 17 | 197 | 1.04e-50 | 170 |
MS.gene56827.t1 | AT2G15480 | 46.409 | 181 | 89 | 2 | 1 | 173 | 17 | 197 | 1.47e-50 | 170 |
MS.gene56827.t1 | AT3G53150 | 38.418 | 177 | 104 | 3 | 1 | 173 | 29 | 204 | 2.35e-35 | 129 |
MS.gene56827.t1 | AT2G36750 | 38.889 | 180 | 99 | 4 | 1 | 173 | 17 | 192 | 1.76e-34 | 127 |
MS.gene56827.t1 | AT2G36780 | 39.444 | 180 | 98 | 4 | 1 | 173 | 21 | 196 | 9.39e-34 | 125 |
MS.gene56827.t1 | AT2G36770 | 36.932 | 176 | 108 | 2 | 1 | 173 | 21 | 196 | 2.42e-33 | 124 |
MS.gene56827.t1 | AT2G36790 | 37.222 | 180 | 102 | 4 | 1 | 173 | 20 | 195 | 7.18e-33 | 122 |
MS.gene56827.t1 | AT2G36800 | 36.667 | 180 | 103 | 4 | 1 | 173 | 19 | 194 | 1.18e-32 | 122 |
MS.gene56827.t1 | AT2G36760 | 36.667 | 180 | 103 | 5 | 1 | 173 | 21 | 196 | 2.84e-31 | 118 |
MS.gene56827.t1 | AT3G53160 | 34.463 | 177 | 111 | 3 | 1 | 173 | 15 | 190 | 6.70e-29 | 111 |
MS.gene56827.t1 | AT1G10400 | 33.918 | 171 | 101 | 4 | 1 | 164 | 14 | 179 | 3.97e-19 | 84.3 |
MS.gene56827.t1 | AT2G16890 | 33.721 | 172 | 102 | 4 | 1 | 164 | 16 | 183 | 6.78e-19 | 82.4 |
MS.gene56827.t1 | AT2G16890 | 33.721 | 172 | 102 | 4 | 1 | 164 | 16 | 183 | 6.78e-19 | 82.4 |
MS.gene56827.t1 | AT2G16890 | 33.721 | 172 | 102 | 4 | 1 | 164 | 16 | 183 | 1.26e-18 | 82.8 |
MS.gene56827.t1 | AT2G16890 | 33.721 | 172 | 102 | 4 | 1 | 164 | 16 | 183 | 1.38e-18 | 82.8 |
MS.gene56827.t1 | AT5G14860 | 30.168 | 179 | 107 | 4 | 1 | 164 | 15 | 190 | 1.71e-18 | 82.4 |
Find 47 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTGATTCTGCTACAAAATT+TGG | 0.149218 | 4.2:+25189943 | MS.gene56827:CDS |
GGATATCGATGTTATTAAAA+TGG | 0.244672 | 4.2:-25189732 | None:intergenic |
TGAAAGGCTCATACTGTTCC+AGG | 0.290048 | 4.2:-25190023 | None:intergenic |
CGAAATTATATGCAGAAATC+AGG | 0.304561 | 4.2:+25190166 | MS.gene56827:intron |
TTCGTTATTCCTAATCTTCC+TGG | 0.313410 | 4.2:+25190072 | MS.gene56827:CDS |
CACAAGGGAACTTGATGGTT+TGG | 0.348011 | 4.2:-25189753 | None:intergenic |
TTTATATTCCCAGGAAGATT+AGG | 0.353383 | 4.2:-25190081 | None:intergenic |
TATGATACCCACCATTGATA+TGG | 0.358951 | 4.2:+25189615 | MS.gene56827:CDS |
ATTTGCTTCAAAAGGTGTTA+AGG | 0.402044 | 4.2:+25189645 | MS.gene56827:CDS |
GCCAAAATATTTGCTTCAAA+AGG | 0.405426 | 4.2:+25189637 | MS.gene56827:CDS |
CTACAAAATTTGGTATTCCT+AGG | 0.425916 | 4.2:+25189953 | MS.gene56827:CDS |
GAATCAGAGGTGAGGAGTTA+TGG | 0.439127 | 4.2:+25190189 | MS.gene56827:CDS |
ATTGTGTGCTTCACAATGCC+TGG | 0.442439 | 4.2:+25190005 | MS.gene56827:CDS |
TGCAATCCCTACAGTTTCCC+TGG | 0.443685 | 4.2:+25189813 | MS.gene56827:CDS |
TTGCTGATATGTTCTTTCCA+TGG | 0.445514 | 4.2:+25189917 | MS.gene56827:CDS |
CTCTACACAAGGGAACTTGA+TGG | 0.447905 | 4.2:-25189758 | None:intergenic |
GTTGAGGGGTGTGGTAACTA+TGG | 0.449523 | 4.2:-25189671 | None:intergenic |
TTGAAGCAATAGTTCTTCAA+AGG | 0.464257 | 4.2:-25189875 | None:intergenic |
TGCTGATATGTTCTTTCCAT+GGG | 0.466725 | 4.2:+25189918 | MS.gene56827:CDS |
AGGATTGTATTCCATTCCAC+TGG | 0.475266 | 4.2:+25189973 | MS.gene56827:CDS |
TAAAATGAAAGGTTTGTTGA+GGG | 0.476210 | 4.2:-25189686 | None:intergenic |
CTAGTAGCAGTAAAGAATGT+AGG | 0.485771 | 4.2:-25189838 | None:intergenic |
TCGTTATTCCTAATCTTCCT+GGG | 0.486747 | 4.2:+25190073 | MS.gene56827:CDS |
TATCAATGGTGGGTATCATA+TGG | 0.492613 | 4.2:-25189612 | None:intergenic |
CAGTAAAGAATGTAGGAACC+AGG | 0.503230 | 4.2:-25189831 | None:intergenic |
TCTATGGATCTTAAAATGAA+AGG | 0.513821 | 4.2:-25189697 | None:intergenic |
TGAAGCAATAGTTCTTCAAA+GGG | 0.519455 | 4.2:-25189874 | None:intergenic |
ATCAAGTTCCCTTGTGTAGA+GGG | 0.524327 | 4.2:+25189760 | MS.gene56827:CDS |
TTAAAATGAAAGGTTTGTTG+AGG | 0.526459 | 4.2:-25189687 | None:intergenic |
GTGGAATGGAATACAATCCT+AGG | 0.526710 | 4.2:-25189970 | None:intergenic |
GAAAGGTTTGTTGAGGGGTG+TGG | 0.545161 | 4.2:-25189680 | None:intergenic |
ATGAAAAGAAACCAGTGGAA+TGG | 0.545770 | 4.2:-25189984 | None:intergenic |
AAGTTCCCTTGTGTAGAGGG+TGG | 0.569695 | 4.2:+25189763 | MS.gene56827:CDS |
GAAATTATATGCAGAAATCA+GGG | 0.575596 | 4.2:+25190167 | MS.gene56827:intron |
CATCAAGTTCCCTTGTGTAG+AGG | 0.577864 | 4.2:+25189759 | MS.gene56827:CDS |
TAGGAACCAGGGAAACTGTA+GGG | 0.586700 | 4.2:-25189819 | None:intergenic |
AAAATGAAAGGTTTGTTGAG+GGG | 0.587175 | 4.2:-25189685 | None:intergenic |
GTAGCAGAATCAGTTGCCCA+TGG | 0.601415 | 4.2:-25189934 | None:intergenic |
AGTAAAGAATGTAGGAACCA+GGG | 0.602699 | 4.2:-25189830 | None:intergenic |
TGCAGAAATCAGGGAATCAG+AGG | 0.604245 | 4.2:+25190176 | MS.gene56827:intron |
GTAGGAACCAGGGAAACTGT+AGG | 0.615639 | 4.2:-25189820 | None:intergenic |
GTAGAGGGTGGTTTACCTGA+AGG | 0.628374 | 4.2:+25189775 | MS.gene56827:CDS |
GGTAAACCACCCTCTACACA+AGG | 0.630895 | 4.2:-25189769 | None:intergenic |
AAATCAGGGAATCAGAGGTG+AGG | 0.651564 | 4.2:+25190181 | MS.gene56827:CDS |
ACACAATGAAAAGAAACCAG+TGG | 0.706325 | 4.2:-25189989 | None:intergenic |
GTAAACCACCCTCTACACAA+GGG | 0.757379 | 4.2:-25189768 | None:intergenic |
ATATCAGCAACAATGCAGTG+TGG | 0.781281 | 4.2:-25189904 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCATTTTTTGTGAATATATT+TGG | - | chr4.2:25190126-25190145 | None:intergenic | 15.0% |
! | GAAATTATATGCAGAAATCA+GGG | + | chr4.2:25190167-25190186 | MS.gene56827:intron | 25.0% |
! | GGATATCGATGTTATTAAAA+TGG | - | chr4.2:25189735-25189754 | None:intergenic | 25.0% |
! | TCTATGGATCTTAAAATGAA+AGG | - | chr4.2:25189700-25189719 | None:intergenic | 25.0% |
!! | ATATAATTTCGCGATGTTTT+GGG | - | chr4.2:25190157-25190176 | None:intergenic | 25.0% |
!! | ATGGATTTTGAATTGTTCTA+TGG | - | chr4.2:25189716-25189735 | None:intergenic | 25.0% |
!! | TCAGAAGAAACATTTTTGAA+AGG | - | chr4.2:25190042-25190061 | None:intergenic | 25.0% |
!!! | AAATATTTTGGCCATATCAA+TGG | - | chr4.2:25189629-25189648 | None:intergenic | 25.0% |
!!! | ACCTTTTGAAGCAAATATTT+TGG | - | chr4.2:25189641-25189660 | None:intergenic | 25.0% |
!!! | TAAAATGAAAGGTTTGTTGA+GGG | - | chr4.2:25189689-25189708 | None:intergenic | 25.0% |
!!! | TTAAAATGAAAGGTTTGTTG+AGG | - | chr4.2:25189690-25189709 | None:intergenic | 25.0% |
CGAAATTATATGCAGAAATC+AGG | + | chr4.2:25190166-25190185 | MS.gene56827:intron | 30.0% | |
CTACAAAATTTGGTATTCCT+AGG | + | chr4.2:25189953-25189972 | MS.gene56827:CDS | 30.0% | |
CTGGGAATATAAAAATGACA+AGG | + | chr4.2:25190091-25190110 | MS.gene56827:CDS | 30.0% | |
GCCAAAATATTTGCTTCAAA+AGG | + | chr4.2:25189637-25189656 | MS.gene56827:CDS | 30.0% | |
TGAAGCAATAGTTCTTCAAA+GGG | - | chr4.2:25189877-25189896 | None:intergenic | 30.0% | |
TTGAAGCAATAGTTCTTCAA+AGG | - | chr4.2:25189878-25189897 | None:intergenic | 30.0% | |
TTTATATTCCCAGGAAGATT+AGG | - | chr4.2:25190084-25190103 | None:intergenic | 30.0% | |
! | ACTGATTCTGCTACAAAATT+TGG | + | chr4.2:25189943-25189962 | MS.gene56827:CDS | 30.0% |
! | CATATAATTTCGCGATGTTT+TGG | - | chr4.2:25190158-25190177 | None:intergenic | 30.0% |
!! | AAAATGAAAGGTTTGTTGAG+GGG | - | chr4.2:25189688-25189707 | None:intergenic | 30.0% |
!! | ATTTGCTTCAAAAGGTGTTA+AGG | + | chr4.2:25189645-25189664 | MS.gene56827:CDS | 30.0% |
!!! | CTTGTCATTTTTATATTCCC+AGG | - | chr4.2:25190093-25190112 | None:intergenic | 30.0% |
ACACAATGAAAAGAAACCAG+TGG | - | chr4.2:25189992-25190011 | None:intergenic | 35.0% | |
AGTAAAGAATGTAGGAACCA+GGG | - | chr4.2:25189833-25189852 | None:intergenic | 35.0% | |
ATGAAAAGAAACCAGTGGAA+TGG | - | chr4.2:25189987-25190006 | None:intergenic | 35.0% | |
CTAGTAGCAGTAAAGAATGT+AGG | - | chr4.2:25189841-25189860 | None:intergenic | 35.0% | |
TATGATACCCACCATTGATA+TGG | + | chr4.2:25189615-25189634 | MS.gene56827:CDS | 35.0% | |
TCGTTATTCCTAATCTTCCT+GGG | + | chr4.2:25190073-25190092 | MS.gene56827:CDS | 35.0% | |
TGCTGATATGTTCTTTCCAT+GGG | + | chr4.2:25189918-25189937 | MS.gene56827:CDS | 35.0% | |
TTCGTTATTCCTAATCTTCC+TGG | + | chr4.2:25190072-25190091 | MS.gene56827:CDS | 35.0% | |
TTGCTGATATGTTCTTTCCA+TGG | + | chr4.2:25189917-25189936 | MS.gene56827:CDS | 35.0% | |
!! | ATTTTGGCCATATCAATGGT+GGG | - | chr4.2:25189625-25189644 | None:intergenic | 35.0% |
!! | TATCAATGGTGGGTATCATA+TGG | - | chr4.2:25189615-25189634 | None:intergenic | 35.0% |
!!! | TATTTTGGCCATATCAATGG+TGG | - | chr4.2:25189626-25189645 | None:intergenic | 35.0% |
AGGATTGTATTCCATTCCAC+TGG | + | chr4.2:25189973-25189992 | MS.gene56827:CDS | 40.0% | |
ATATCAGCAACAATGCAGTG+TGG | - | chr4.2:25189907-25189926 | None:intergenic | 40.0% | |
ATCAAGTTCCCTTGTGTAGA+GGG | + | chr4.2:25189760-25189779 | MS.gene56827:CDS | 40.0% | |
CAGTAAAGAATGTAGGAACC+AGG | - | chr4.2:25189834-25189853 | None:intergenic | 40.0% | |
GTGGAATGGAATACAATCCT+AGG | - | chr4.2:25189973-25189992 | None:intergenic | 40.0% | |
! | TCAACATTTTCACAGCCTTC+AGG | - | chr4.2:25189793-25189812 | None:intergenic | 40.0% |
AAATCAGGGAATCAGAGGTG+AGG | + | chr4.2:25190181-25190200 | MS.gene56827:CDS | 45.0% | |
ATTGTGTGCTTCACAATGCC+TGG | + | chr4.2:25190005-25190024 | MS.gene56827:CDS | 45.0% | |
CATCAAGTTCCCTTGTGTAG+AGG | + | chr4.2:25189759-25189778 | MS.gene56827:CDS | 45.0% | |
CTCTACACAAGGGAACTTGA+TGG | - | chr4.2:25189761-25189780 | None:intergenic | 45.0% | |
GAATCAGAGGTGAGGAGTTA+TGG | + | chr4.2:25190189-25190208 | MS.gene56827:CDS | 45.0% | |
GTAAACCACCCTCTACACAA+GGG | - | chr4.2:25189771-25189790 | None:intergenic | 45.0% | |
TAGGAACCAGGGAAACTGTA+GGG | - | chr4.2:25189822-25189841 | None:intergenic | 45.0% | |
TGAAAGGCTCATACTGTTCC+AGG | - | chr4.2:25190026-25190045 | None:intergenic | 45.0% | |
TGCAGAAATCAGGGAATCAG+AGG | + | chr4.2:25190176-25190195 | MS.gene56827:intron | 45.0% | |
! | CACAAGGGAACTTGATGGTT+TGG | - | chr4.2:25189756-25189775 | None:intergenic | 45.0% |
AAGTTCCCTTGTGTAGAGGG+TGG | + | chr4.2:25189763-25189782 | MS.gene56827:CDS | 50.0% | |
GGTAAACCACCCTCTACACA+AGG | - | chr4.2:25189772-25189791 | None:intergenic | 50.0% | |
GTAGAGGGTGGTTTACCTGA+AGG | + | chr4.2:25189775-25189794 | MS.gene56827:CDS | 50.0% | |
GTAGCAGAATCAGTTGCCCA+TGG | - | chr4.2:25189937-25189956 | None:intergenic | 50.0% | |
GTAGGAACCAGGGAAACTGT+AGG | - | chr4.2:25189823-25189842 | None:intergenic | 50.0% | |
TGCAATCCCTACAGTTTCCC+TGG | + | chr4.2:25189813-25189832 | MS.gene56827:CDS | 50.0% | |
! | GTTGAGGGGTGTGGTAACTA+TGG | - | chr4.2:25189674-25189693 | None:intergenic | 50.0% |
!! | GAAAGGTTTGTTGAGGGGTG+TGG | - | chr4.2:25189683-25189702 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 25189601 | 25190226 | 25189601 | ID=MS.gene56827 |
chr4.2 | mRNA | 25189601 | 25190226 | 25189601 | ID=MS.gene56827.t1;Parent=MS.gene56827 |
chr4.2 | exon | 25189601 | 25190112 | 25189601 | ID=MS.gene56827.t1.exon1;Parent=MS.gene56827.t1 |
chr4.2 | CDS | 25189601 | 25190112 | 25189601 | ID=cds.MS.gene56827.t1;Parent=MS.gene56827.t1 |
chr4.2 | exon | 25190181 | 25190226 | 25190181 | ID=MS.gene56827.t1.exon2;Parent=MS.gene56827.t1 |
chr4.2 | CDS | 25190181 | 25190226 | 25190181 | ID=cds.MS.gene56827.t1;Parent=MS.gene56827.t1 |
Gene Sequence |
Protein sequence |