AlfalfaGEDB | MS.gene56204

M. sativa cultivar XinJiangDaYe / MS.gene56204

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016757 GO:0016758
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56204.t1	XP_003598165.1	87.6	482	13	1	1	435	1	482	1.50E-238	835.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56204.t1	F8WKW1	52.5	476	173	5	8	433	9	481	6.3e-137	488.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56204.t1	G7IVJ7	87.6	482	13	1	1	435	1	482	1.1e-238	835.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene56204	0.829124	6.13E-55	-1.69E-46
MS.gene049356	MS.gene56204	0.85974	3.35E-63	-1.69E-46
MS.gene049369	MS.gene56204	0.819602	1.07E-52	-1.69E-46
MS.gene049427	MS.gene56204	0.830984	2.16E-55	-1.69E-46
MS.gene049491	MS.gene56204	0.81334	2.69E-51	-1.69E-46
MS.gene049662	MS.gene56204	0.80184	7.45E-49	-1.69E-46
MS.gene049758	MS.gene56204	0.814966	1.18E-51	-1.69E-46
MS.gene050076	MS.gene56204	0.80365	3.15E-49	-1.69E-46
MS.gene050128	MS.gene56204	0.822215	2.67E-53	-1.69E-46
MS.gene050301	MS.gene56204	0.86082	1.58E-63	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene009076	MS.gene56204	PPI
MS.gene009405	MS.gene56204	PPI
MS.gene009637	MS.gene56204	PPI
MS.gene010467	MS.gene56204	PPI
MS.gene010469	MS.gene56204	PPI
MS.gene016847	MS.gene56204	PPI
MS.gene021240	MS.gene56204	PPI
MS.gene024453	MS.gene56204	PPI
MS.gene027192	MS.gene56204	PPI
MS.gene029598	MS.gene56204	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene56204.t1	MTR_3g008010	87.552	482	13	1	1	435	1	482	844
MS.gene56204.t1	MTR_6g014290	78.838	482	55	1	1	435	1	482	771
MS.gene56204.t1	MTR_6g014250	75.519	482	71	1	1	435	1	482	724
MS.gene56204.t1	MTR_6g014220	72.083	480	87	1	1	433	1	480	701
MS.gene56204.t1	MTR_6g014170	70.747	482	78	2	1	435	1	466	671
MS.gene56204.t1	MTR_6g014040	64.609	486	120	4	1	435	1	485	631
MS.gene56204.t1	MTR_6g013440	65.361	485	116	4	1	434	1	484	629
MS.gene56204.t1	MTR_6g014020	64.124	485	123	3	1	435	1	484	628
MS.gene56204.t1	MTR_6g014186	68.326	442	127	3	4	433	1	441	625
MS.gene56204.t1	MTR_6g014310	66.186	485	112	4	1	434	1	484	614

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56204.t1	AT1G22340	48.319	476	194	5	8	433	11	484	2.65e-164	471
MS.gene56204.t1	AT1G22360	47.826	483	201	4	1	434	1	481	2.13e-158	456
MS.gene56204.t1	AT1G22400	47.500	480	200	5	6	435	9	486	3.39e-158	456
MS.gene56204.t1	AT1G22380	47.059	476	201	4	8	434	11	484	6.63e-155	447
MS.gene56204.t1	AT1G22370	48.852	479	189	5	5	434	8	479	2.27e-153	443
MS.gene56204.t1	AT1G22360	46.584	483	195	5	1	434	1	469	2.89e-150	435
MS.gene56204.t1	AT1G78270	43.396	477	217	5	5	431	8	481	4.57e-139	407
MS.gene56204.t1	AT1G22370	44.884	303	118	3	181	434	7	309	1.85e-75	238
MS.gene56204.t1	AT5G59590	28.875	471	244	13	12	427	12	446	1.21e-51	180
MS.gene56204.t1	AT3G46670	28.358	469	249	13	12	427	11	445	2.93e-49	174

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Find 85 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGTGAAACAATCTA+AGG	0.408184	3.3:-3924394	None:intergenic
AAACGCTTGCTCAAATCAAG+AGG	0.611360	3.3:+3924363	MS.gene56204:CDS
AACTCCACAAATTCATCAAT+TGG	0.344444	3.3:+3925433	MS.gene56204:CDS
AAGATATCGAGTGTCTTCAA+TGG	0.554080	3.3:+3925483	MS.gene56204:CDS
AAGCATTACAGTTATGACTC+CGG	0.627386	3.3:+3925550	MS.gene56204:CDS
AATAAAGAACATGCACTTGA+TGG	0.347416	3.3:-3924657	None:intergenic
AATGAAGGTAAAGGGCCAAT+CGG	0.457592	3.3:-3925401	None:intergenic
AATTCTAACATAATATCGTT+TGG	0.350657	3.3:-3925263	None:intergenic
ACAAAAGTAGATTGGATTCC+AGG	0.332750	3.3:+3925188	MS.gene56204:CDS
ACTAGGCCCGATCTTGTCAT+TGG	0.504474	3.3:+3925632	MS.gene56204:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGGCCAACATAACAT+TGG	-	chr3.3:3925821-3925840	None:intergenic	30.0%
AACTCCACAAATTCATCAAT+TGG	+	chr3.3:3925433-3925452	MS.gene56204:CDS	30.0%
AATAAAGAACATGCACTTGA+TGG	-	chr3.3:3924660-3924679	None:intergenic	30.0%
ACTCGATTAACGAATCTATA+AGG	-	chr3.3:3924955-3924974	None:intergenic	30.0%
AGGAAAGAATATGAGAGAAA+AGG	+	chr3.3:3925964-3925983	MS.gene56204:CDS	30.0%
ATTCTTTAGATTCCAACCTT+TGG	+	chr3.3:3925456-3925475	MS.gene56204:CDS	30.0%
ATTGATGAATTTGTGGAGTT+TGG	-	chr3.3:3925433-3925452	None:intergenic	30.0%
CAAATAAATCTACAGTCTGT+TGG	-	chr3.3:3925854-3925873	None:intergenic	30.0%
CTAGTAATAAGTTCACAGTA+GGG	-	chr3.3:3924525-3924544	None:intergenic	30.0%
CTTATAGATTGACAAAGAGA+AGG	-	chr3.3:3924486-3924505	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	3924219	3926090	3924219	ID=MS.gene56204
chr3.3	mRNA	3924219	3926090	3924219	ID=MS.gene56204.t1;Parent=MS.gene56204
chr3.3	exon	3924219	3924732	3924219	ID=MS.gene56204.t1.exon1;Parent=MS.gene56204.t1
chr3.3	CDS	3924219	3924732	3924219	ID=cds.MS.gene56204.t1;Parent=MS.gene56204.t1
chr3.3	exon	3925156	3925716	3925156	ID=MS.gene56204.t1.exon2;Parent=MS.gene56204.t1
chr3.3	CDS	3925156	3925716	3925156	ID=cds.MS.gene56204.t1;Parent=MS.gene56204.t1
chr3.3	exon	3925858	3926090	3925858	ID=MS.gene56204.t1.exon3;Parent=MS.gene56204.t1
chr3.3	CDS	3925858	3926090	3925858	ID=cds.MS.gene56204.t1;Parent=MS.gene56204.t1

Gene Sequence

>MS.gene56204

ATGGTAAACTTTGCAAACACAAAACCACATGCTGTGTTGATTCCATATCCAGCTCAAGGCCATATCAATCCATTGTTCAAGCTAGCAAAACTACTTCACCTTAGAGGCTTTTACATAACCTTTGTCAACACTGAATACAATCACAAACGCTTGCTCAAATCAAGAGGTCCAAATGCCTTAGATTGTTTCACTGATTTTAGCTTTGAAACCATCCCAGATGGTCTAACATCACTAGAAGGTGATGGTGATGTTAGTCAACATGTGCCTTCTCTTTGTCAATCTATAAGAAAGAATTTCCTTAAACCCTACTGTGAACTTATTACTAGACTTAATCACTCTACCACTGTTCCACCAGTTACTTGCTTAGTTTCTGATTGTTTGATGAGCTTTACTATACAAGCTGCTGAAGAATTTGCACTCCCTAATGTTCTCTTTTTTCCATCAAGTGCATGTTCTTTATTGAATGTTATGCACTTTCGTTCCTTTGTAGAAAGAGGCATCACACCATTCAAAGGTACTGCTAAGTCTATTTTCTTGATAGATGATGATAGTATGTGTACTCTATATATATATAGTGGGTATGCGCGCGCGTGAAATTCAACTTACTCCAAGATTAACTCTTGACATATATATATAGTTATTCCATTTTATTTTTCAAAAACTATTGAAGGGGGGAAATTATTTCTAATGATAGATAATTTTACAAGGTTAAACTCTTACTACTGAGCTGACACCTTATAGATTCGTTAATCGAGTTAATAACAAGCCAACCGTCAAATTAAAAACTCTCGCTGAGAAGATGACATGCACAAAATTTTATAAAACTTCAAAACTAAAATTCATATTTCAACAAATAACTCTCATTGAATGTATAATACCTCATATGTGTGTGTATATGAACCTTCAAACTATTAACTTTTGTACTTATGATATGCAGATGAGAGTTATCTAACAAATGGATATTTGGAAACAAAAGTAGATTGGATTCCAGGTTTGAAAAATTTTCGGTTGAAGGATATTGTTGACTTTATCAGAACAACAAATCCAAACGATATTATGTTAGAATTCTTTATTGAAATTGCAGATAGAGTTAATAGAGACTCTACTATTCTTTTGAATACTTTCAATGAACTTGAGAGTGATGTAATAAATGCTCTCTCCTCTATAATTCCTTATGTTTACCCGATTGGCCCTTTACCTTCATTATTGAACCAAACTCCACAAATTCATCAATTGGATTCTTTAGATTCCAACCTTTGGAAAGAAGATATCGAGTGTCTTCAATGGCTTGAATCGAAGGAACCAAGATCTGTTGTTTATGTGAATTTTGGAAGCATTACAGTTATGACTCCGGAGCAACTTCAGGAATTTGCTTGGGGCTTGGCAAATAGCAAGACACTATTTTTGTGGATCACTAGGCCCGATCTTGTCATTGGTGGCTCAGTGATTTTGTCATCTGACTTTGCGAATGAAATTTCAGATAGAGGCCTAATAGCAAGTTGGTGTCCACAAGAGAAAGTGTTGAACCACCCTTCAATCGGTGGATTCTTGACTCATTGCGGATGGAACTCAACCACTGAAAGCATATGTGCTGGAGTGCCAATGTTATGTTGGCCATTTTTTGCCGATCAGCCAACAGACTGTAGATTTATTTGTAATGAATGGAAGATTGGTATGGAAATCGATACGAATGTGAAGAGAGAGGAGGTGGCGAAGCTGATCAATGAATTGATAGCCGGAGATGAAGGAAAGAATATGAGAGAAAAGGCCATGGAATTGAAGAAGAAGGCGGAGGAGAACACTAAACCGGGTGGTTGTTCATACATGAACTTCGACAAAGTTATTAAGGAAGTGTTGCTTAAACAAAATTAG

Protein sequence

>MS.gene56204.t1

MVNFANTKPHAVLIPYPAQGHINPLFKLAKLLHLRGFYITFVNTEYNHKRLLKSRGPNALDCFTDFSFETIPDGLTSLEGDGDVSQHVPSLCQSIRKNFLKPYCELITRLNHSTTVPPVTCLVSDCLMSFTIQAAEEFALPNVLFFPSSACSLLNVMHFRSFVERGITPFKDESYLTNGYLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEIADRVNRDSTILLNTFNELESDVINALSSIIPYVYPIGPLPSLLNQTPQIHQLDSLDSNLWKEDIECLQWLESKEPRSVVYVNFGSITVMTPEQLQEFAWGLANSKTLFLWITRPDLVIGGSVILSSDFANEISDRGLIANCRFICNEWKIGMEIDTNVKREEVAKLINELIAGDEGKNMREKAMELKKKAEENTKPGGCSYMNFDKVIKEVLLKQN