AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86109


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86109.t1 MTR_6g014250 80.466 343 36 1 1 312 1 343 0.0 558
MS.gene86109.t1 MTR_6g014250 83.784 74 12 0 313 386 409 482 7.95e-33 128
MS.gene86109.t1 MTR_6g014290 79.009 343 41 1 1 312 1 343 0.0 553
MS.gene86109.t1 MTR_6g014290 85.135 74 11 0 313 386 409 482 9.81e-35 134
MS.gene86109.t1 MTR_3g008010 79.300 343 40 1 1 312 1 343 0.0 540
MS.gene86109.t1 MTR_3g008010 82.432 74 13 0 313 386 409 482 4.66e-34 132
MS.gene86109.t1 MTR_6g014220 74.636 343 56 1 1 312 1 343 0.0 520
MS.gene86109.t1 MTR_6g014220 77.465 71 16 0 314 384 410 480 1.00e-28 117
MS.gene86109.t1 MTR_6g014186 58.371 442 122 4 4 384 1 441 0.0 515
MS.gene86109.t1 MTR_6g014170 77.064 327 60 2 1 312 1 327 8.62e-178 503
MS.gene86109.t1 MTR_6g014170 76.712 73 17 0 314 386 394 466 1.24e-29 119
MS.gene86109.t1 MTR_6g013680 61.579 380 94 5 55 385 2 378 1.06e-158 451
MS.gene86109.t1 MTR_6g013440 52.818 479 126 8 6 385 7 484 3.25e-155 446
MS.gene86109.t1 MTR_6g014040 64.265 347 88 4 1 312 1 346 2.23e-152 439
MS.gene86109.t1 MTR_6g014040 68.919 74 23 0 313 386 412 485 1.38e-26 111
MS.gene86109.t1 MTR_6g014020 63.006 346 93 3 1 312 1 345 3.38e-150 433
MS.gene86109.t1 MTR_6g014020 66.216 74 25 0 313 386 411 484 3.39e-26 110
MS.gene86109.t1 MTR_6g014300 50.964 467 137 10 6 385 8 469 1.11e-145 421
MS.gene86109.t1 MTR_8g007585 56.971 416 129 9 1 386 1 396 1.26e-144 416
MS.gene86109.t1 MTR_6g014310 64.162 346 88 4 1 311 1 345 3.46e-143 416
MS.gene86109.t1 MTR_6g014310 72.603 73 20 0 313 385 412 484 1.80e-28 116
MS.gene86109.t1 MTR_0288s0020 62.536 347 74 4 1 312 1 326 2.22e-142 413
MS.gene86109.t1 MTR_6g013450 61.383 347 98 4 1 312 1 346 3.63e-142 413
MS.gene86109.t1 MTR_6g013450 65.753 73 25 0 313 385 412 484 2.59e-25 107
MS.gene86109.t1 MTR_6g014050 64.841 347 86 4 1 312 1 346 5.00e-141 410
MS.gene86109.t1 MTR_6g014050 79.730 74 15 0 313 386 412 485 2.98e-32 127
MS.gene86109.t1 MTR_8g059425 62.139 346 94 4 1 312 1 343 6.59e-140 407
MS.gene86109.t1 MTR_8g059425 72.973 74 20 0 313 386 409 482 5.66e-29 117
MS.gene86109.t1 MTR_6g014200 62.974 343 92 4 4 312 1 342 3.16e-139 405
MS.gene86109.t1 MTR_6g014200 74.648 71 18 0 314 384 409 479 4.36e-29 118
MS.gene86109.t1 MTR_6g014270 59.710 345 102 4 4 312 1 344 1.14e-138 404
MS.gene86109.t1 MTR_6g014270 82.432 74 13 0 313 386 410 483 2.85e-34 132
MS.gene86109.t1 MTR_6g014150 61.224 343 98 3 4 312 1 342 2.79e-138 403
MS.gene86109.t1 MTR_6g014150 71.622 74 21 0 313 386 408 481 1.01e-28 117
MS.gene86109.t1 MTR_6g013960 58.092 346 110 3 1 312 1 345 1.41e-133 391
MS.gene86109.t1 MTR_6g013960 75.342 73 18 0 314 386 412 484 1.93e-30 122
MS.gene86109.t1 MTR_6g014187 58.960 346 107 3 1 312 1 345 3.55e-133 390
MS.gene86109.t1 MTR_6g014187 75.676 74 18 0 313 386 411 484 2.03e-30 122
MS.gene86109.t1 MTR_6g013990 60.756 344 102 3 1 312 1 343 7.45e-133 389
MS.gene86109.t1 MTR_6g013990 72.222 72 20 0 314 385 410 481 1.69e-26 110
MS.gene86109.t1 MTR_6g011340 58.960 346 107 3 1 312 1 345 7.79e-132 387
MS.gene86109.t1 MTR_6g011340 79.167 72 15 0 314 385 412 483 8.58e-30 120
MS.gene86109.t1 MTR_6g013900 59.538 346 104 4 1 312 1 344 2.85e-129 380
MS.gene86109.t1 MTR_6g013900 66.216 74 25 0 313 386 410 483 4.76e-26 109
MS.gene86109.t1 MTR_6g014240 61.111 324 99 5 4 312 1 312 2.79e-128 377
MS.gene86109.t1 MTR_6g014240 70.270 74 22 0 313 386 378 451 2.56e-28 115
MS.gene86109.t1 MTR_7g011470 62.236 331 102 4 1 312 1 327 7.95e-128 376
MS.gene86109.t1 MTR_7g011470 73.973 73 19 0 313 385 393 465 4.35e-28 115
MS.gene86109.t1 MTR_6g013920 58.671 346 107 4 1 312 1 344 1.04e-127 376
MS.gene86109.t1 MTR_6g013920 64.384 73 26 0 313 385 410 482 6.99e-25 106
MS.gene86109.t1 MTR_7g011470 62.349 332 104 4 1 312 1 331 1.10e-127 375
MS.gene86109.t1 MTR_7g011470 73.973 73 19 0 313 385 397 469 5.38e-28 115
MS.gene86109.t1 MTR_5g058320 57.558 344 100 4 1 312 1 330 1.98e-127 375
MS.gene86109.t1 MTR_5g058320 65.753 73 25 0 313 385 396 468 2.90e-25 107
MS.gene86109.t1 MTR_5g464810 53.179 346 125 5 1 312 1 343 4.71e-123 364
MS.gene86109.t1 MTR_5g464810 43.836 73 39 2 313 384 409 480 5.41e-12 67.4
MS.gene86109.t1 MTR_5g064240 53.179 346 125 5 1 312 1 343 4.71e-123 364
MS.gene86109.t1 MTR_5g064240 43.836 73 39 2 313 384 409 480 5.41e-12 67.4
MS.gene86109.t1 MTR_5g464760 52.011 348 128 6 1 312 1 345 6.65e-119 353
MS.gene86109.t1 MTR_0036s0220 51.488 336 128 4 9 312 11 343 1.41e-117 350
MS.gene86109.t1 MTR_0036s0220 41.667 72 40 2 313 383 409 479 3.70e-11 64.7
MS.gene86109.t1 MTR_0199s0010 70.204 245 41 2 1 214 1 244 1.45e-117 343
MS.gene86109.t1 MTR_2g008210 50.000 344 136 3 5 317 6 344 5.29e-115 343
MS.gene86109.t1 MTR_2g008210 55.556 72 31 1 313 383 407 478 2.01e-16 80.9
MS.gene86109.t1 MTR_6g013435 55.949 311 83 5 128 385 1 310 4.94e-107 317
MS.gene86109.t1 MTR_6g014160 46.528 432 150 9 1 386 1 397 9.43e-107 320
MS.gene86109.t1 MTR_3g079480 43.413 334 155 3 6 307 17 348 1.40e-95 294
MS.gene86109.t1 MTR_3g079480 51.429 70 34 0 313 382 420 489 3.18e-16 80.5
MS.gene86109.t1 MTR_3g479520 44.012 334 153 4 6 307 11 342 7.86e-95 292
MS.gene86109.t1 MTR_3g479520 50.000 70 35 0 313 382 414 483 4.01e-16 80.1
MS.gene86109.t1 MTR_3g479490 44.012 334 153 4 6 307 2 333 2.70e-94 290
MS.gene86109.t1 MTR_3g479490 48.571 70 36 0 313 382 405 474 2.65e-16 80.5
MS.gene86109.t1 MTR_3g479470 41.617 334 161 3 6 307 9 340 5.14e-88 275
MS.gene86109.t1 MTR_4g094220 43.695 341 154 5 8 312 5 343 5.21e-88 274
MS.gene86109.t1 MTR_4g094220 39.189 74 45 0 312 385 409 482 4.53e-14 73.9
MS.gene86109.t1 MTR_6g014195 65.104 192 64 1 1 189 1 192 1.61e-87 264
MS.gene86109.t1 MTR_6g014185 44.947 376 116 13 47 382 21 345 5.63e-79 247
MS.gene86109.t1 MTR_8g043470 43.860 285 79 3 59 312 9 243 6.05e-67 217
MS.gene86109.t1 MTR_8g043470 72.973 74 20 0 313 386 309 382 1.14e-30 121
MS.gene86109.t1 MTR_0475s0020 74.419 129 29 2 1 125 1 129 1.18e-60 195
MS.gene86109.t1 MTR_0477s0010 48.848 217 44 3 128 312 1 182 2.15e-54 182
MS.gene86109.t1 MTR_0477s0010 69.863 73 22 0 313 385 248 320 9.00e-27 109
MS.gene86109.t1 MTR_6g014190 71.311 122 34 1 191 312 32 152 2.83e-54 181
MS.gene86109.t1 MTR_6g014190 74.324 74 19 0 313 386 218 291 1.26e-31 121
MS.gene86109.t1 MTR_6g013890 44.309 246 55 7 168 351 19 244 1.36e-52 176
MS.gene86109.t1 MTR_3g479620 48.193 166 84 1 6 171 2 165 1.52e-52 172
MS.gene86109.t1 MTR_3g069710 32.919 322 165 11 12 307 14 310 4.44e-39 145
MS.gene86109.t1 MTR_3g069690 31.761 318 175 9 12 307 10 307 1.33e-36 139
MS.gene86109.t1 MTR_3g479610 39.535 172 72 2 168 307 1 172 1.63e-35 132
MS.gene86109.t1 MTR_3g479610 51.429 70 34 0 313 382 244 313 4.11e-16 79.0
MS.gene86109.t1 MTR_5g031840 29.254 335 195 8 9 311 4 328 1.82e-35 135
MS.gene86109.t1 MTR_7g013260 30.032 313 181 9 9 302 5 298 6.00e-35 134
MS.gene86109.t1 MTR_0891s0010 50.435 115 56 1 194 307 35 149 3.57e-33 125
MS.gene86109.t1 MTR_0891s0010 47.143 70 37 0 313 382 221 290 1.97e-14 73.6
MS.gene86109.t1 MTR_7g013180 27.744 328 190 8 1 303 1 306 4.74e-33 129
MS.gene86109.t1 MTR_5g031860 30.183 328 190 8 9 305 11 330 5.37e-33 129
MS.gene86109.t1 MTR_5g066390 77.027 74 17 0 313 386 146 219 4.18e-32 120
MS.gene86109.t1 MTR_7g013240 28.197 305 196 8 9 302 5 297 4.52e-32 125
MS.gene86109.t1 MTR_5g031830 31.003 329 187 11 9 305 11 331 8.17e-32 125
MS.gene86109.t1 MTR_7g013200 29.022 317 179 8 9 302 4 297 2.03e-31 124
MS.gene86109.t1 MTR_4g064987 29.245 318 181 9 12 305 10 307 4.01e-31 123
MS.gene86109.t1 MTR_5g035580 24.946 461 239 16 6 378 9 450 5.04e-31 123
MS.gene86109.t1 MTR_4g064987 30.159 315 176 11 12 305 10 301 8.26e-31 122
MS.gene86109.t1 MTR_7g013220 28.793 323 183 8 9 302 4 308 1.35e-30 122
MS.gene86109.t1 MTR_6g038240 26.168 321 199 8 4 301 5 310 3.47e-30 120
MS.gene86109.t1 MTR_5g035560 23.729 472 239 15 6 382 7 452 6.77e-28 115
MS.gene86109.t1 MTR_1g107350 27.134 328 197 8 10 308 8 322 2.81e-27 113
MS.gene86109.t1 MTR_6g038300 27.586 319 191 12 7 301 8 310 1.92e-26 110
MS.gene86109.t1 MTR_8g064870 28.438 320 183 11 12 301 13 316 3.84e-26 109
MS.gene86109.t1 MTR_1g032490 27.019 322 193 9 10 302 10 318 4.81e-26 109
MS.gene86109.t1 MTR_1g107315 27.596 337 188 12 1 302 1 316 1.21e-25 108
MS.gene86109.t1 MTR_7g080940 26.852 324 190 13 4 301 6 308 1.81e-25 107
MS.gene86109.t1 MTR_6g038230 28.076 317 194 10 6 301 7 310 2.56e-25 107
MS.gene86109.t1 MTR_1g107365 26.205 332 207 10 5 310 39 358 1.04e-24 105
MS.gene86109.t1 MTR_7g080935 26.498 317 193 10 8 301 9 308 2.36e-24 104
MS.gene86109.t1 MTR_7g070660 26.786 336 172 12 10 301 11 316 1.26e-23 102
MS.gene86109.t1 MTR_7g070800 26.911 327 185 13 10 301 6 313 1.77e-23 102
MS.gene86109.t1 MTR_7g055710 25.826 333 188 9 10 303 11 323 2.68e-23 101
MS.gene86109.t1 MTR_8g083290 28.135 327 186 12 9 301 2 313 4.33e-23 100
MS.gene86109.t1 MTR_6g038220 26.875 320 193 11 6 301 7 309 5.63e-23 100
MS.gene86109.t1 MTR_7g070860 24.385 488 233 18 4 381 1 462 5.72e-23 100
MS.gene86109.t1 MTR_8g064880 27.778 324 184 13 12 301 11 318 6.89e-23 100
MS.gene86109.t1 MTR_3g049970 25.697 323 196 8 10 302 9 317 8.93e-23 100
MS.gene86109.t1 MTR_8g088560 27.707 314 190 13 10 300 10 309 2.66e-22 98.6
MS.gene86109.t1 MTR_7g070610 25.672 335 182 14 10 301 13 323 4.44e-22 98.2
MS.gene86109.t1 MTR_4g095008 25.240 313 198 10 12 302 13 311 4.64e-22 98.2
MS.gene86109.t1 MTR_6g014000 69.841 63 19 0 314 376 88 150 1.14e-21 96.7
MS.gene86109.t1 MTR_7g070740 25.816 337 189 10 5 301 6 321 1.17e-21 96.7
MS.gene86109.t1 MTR_7g070930 26.377 345 182 11 5 303 9 327 1.28e-21 96.7
MS.gene86109.t1 MTR_4g094920 25.538 325 200 12 4 302 18 326 1.72e-21 96.3
MS.gene86109.t1 MTR_1g107380 28.261 322 190 14 10 301 13 323 1.88e-21 96.3
MS.gene86109.t1 MTR_1g107375 26.087 322 183 13 10 298 8 307 2.21e-21 95.9
MS.gene86109.t1 MTR_7g071040 26.087 345 183 11 5 303 12 330 2.55e-21 95.9
MS.gene86109.t1 MTR_5g045960 26.852 324 191 11 10 300 9 319 3.06e-21 95.5
MS.gene86109.t1 MTR_6g038200 26.250 320 196 12 6 301 7 310 4.91e-21 94.7
MS.gene86109.t1 MTR_7g080950 25.602 332 179 13 8 302 4 304 1.86e-20 93.2
MS.gene86109.t1 MTR_7g070910 26.113 337 193 13 5 303 6 324 1.26e-19 90.9
MS.gene86109.t1 MTR_4g485630 26.087 322 199 10 6 301 5 313 1.97e-19 90.1
MS.gene86109.t1 MTR_0078s0200 27.187 320 181 11 11 301 9 305 2.07e-19 88.2
MS.gene86109.t1 MTR_0184s0030 27.187 320 181 11 11 301 9 305 3.42e-19 89.4
MS.gene86109.t1 MTR_7g102450 25.595 336 200 11 9 317 10 322 8.10e-19 88.2
MS.gene86109.t1 MTR_1g107360 26.426 333 184 12 5 298 3 313 2.74e-18 86.7
MS.gene86109.t1 MTR_7g117405 26.829 328 193 11 6 301 8 320 2.77e-18 86.7
MS.gene86109.t1 MTR_4g008630 26.053 380 224 19 12 373 16 356 3.74e-18 86.3
MS.gene86109.t1 MTR_2086s0010 51.429 70 34 0 313 382 103 172 4.70e-18 81.6
MS.gene86109.t1 MTR_1996s0010 51.429 70 34 0 313 382 103 172 4.70e-18 81.6
MS.gene86109.t1 MTR_5g072860 22.650 468 248 15 10 382 18 466 4.70e-18 85.9
MS.gene86109.t1 MTR_5g016480 25.449 334 204 13 4 304 1 322 1.07e-17 84.7
MS.gene86109.t1 MTR_7g080900 25.749 334 183 15 4 301 6 310 2.08e-17 84.0
MS.gene86109.t1 MTR_1g107285 26.332 319 189 13 12 298 10 314 1.03e-16 82.0
MS.gene86109.t1 MTR_8g009073 26.543 324 180 10 10 301 6 303 1.34e-16 81.6
MS.gene86109.t1 MTR_5g040030 24.096 332 194 12 12 304 16 328 1.66e-16 81.3
MS.gene86109.t1 MTR_8g027885 25.625 320 184 11 9 301 17 309 2.90e-16 80.5
MS.gene86109.t1 MTR_4g108250 24.854 342 194 11 5 303 6 327 3.12e-16 80.5
MS.gene86109.t1 MTR_0009s0240 25.600 375 222 16 4 343 1 353 5.65e-16 79.7
MS.gene86109.t1 MTR_8g009063 25.225 333 187 13 3 301 6 310 7.54e-16 79.3
MS.gene86109.t1 MTR_1g019510 26.316 323 180 12 10 301 6 301 7.77e-16 79.3
MS.gene86109.t1 MTR_7g070940 25.225 333 185 11 6 301 5 310 1.00e-15 79.0
MS.gene86109.t1 MTR_1g062380 23.547 344 192 13 10 307 16 334 1.02e-15 79.0
MS.gene86109.t1 MTR_4g117890 26.490 302 196 9 13 300 16 305 1.64e-15 78.2
MS.gene86109.t1 MTR_5g067170 24.516 310 200 9 13 300 14 311 2.05e-15 78.2
MS.gene86109.t1 MTR_7g102550 25.602 332 203 10 1 300 1 320 2.20e-15 77.8
MS.gene86109.t1 MTR_7g070810 25.076 331 195 13 10 308 9 318 2.55e-15 77.8
MS.gene86109.t1 MTR_0184s0040 25.309 324 185 10 10 301 21 319 6.37e-15 76.6
MS.gene86109.t1 MTR_0078s0190 25.309 324 185 10 10 301 21 319 6.37e-15 76.6
MS.gene86109.t1 MTR_8g006270 25.000 344 199 11 7 319 3 318 8.53e-15 75.9
MS.gene86109.t1 MTR_8g465670 25.150 334 182 11 4 301 1 302 8.97e-15 75.9
MS.gene86109.t1 MTR_5g066410 24.333 300 207 8 13 301 1 291 9.57e-15 75.9
MS.gene86109.t1 MTR_5g072810 25.000 320 188 10 10 301 12 307 1.34e-14 75.5
MS.gene86109.t1 MTR_8g006260 25.333 225 127 7 104 302 100 309 1.57e-14 75.1
MS.gene86109.t1 MTR_7g102490 23.494 332 202 10 8 301 7 324 1.68e-14 75.1
MS.gene86109.t1 MTR_7g070780 24.924 329 196 14 10 303 11 323 1.75e-14 75.1
MS.gene86109.t1 MTR_7g117170 24.324 333 188 10 4 301 9 312 1.81e-14 75.1
MS.gene86109.t1 MTR_8g012745 25.703 249 137 7 78 301 81 306 2.21e-14 74.7
MS.gene86109.t1 MTR_4g118000 25.159 314 202 8 3 300 5 301 3.09e-14 74.3
MS.gene86109.t1 MTR_8g027870 25.309 324 180 12 9 301 17 309 3.56e-14 74.3
MS.gene86109.t1 MTR_7g470610 28.415 183 111 4 130 301 5 178 3.94e-14 72.8
MS.gene86109.t1 MTR_7g070583 28.415 183 111 4 130 301 5 178 3.94e-14 72.8
MS.gene86109.t1 MTR_7g047030 24.159 327 191 10 7 301 3 304 5.75e-14 73.6
MS.gene86109.t1 MTR_7g047270 24.159 327 191 10 7 301 3 304 5.75e-14 73.6
MS.gene86109.t1 MTR_5g090700 24.024 333 190 12 7 301 2 309 5.84e-14 73.6
MS.gene86109.t1 MTR_0536s0020 24.834 302 201 9 13 300 21 310 7.70e-14 73.2
MS.gene86109.t1 MTR_5g039900 22.840 324 205 12 12 303 15 325 1.10e-13 72.8
MS.gene86109.t1 MTR_7g067330 26.452 310 185 12 7 301 6 287 1.20e-13 72.4
MS.gene86109.t1 MTR_3g031400 24.149 323 179 11 10 301 18 305 1.34e-13 72.4
MS.gene86109.t1 MTR_4g024020 25.758 330 197 13 8 301 7 324 1.47e-13 72.4
MS.gene86109.t1 MTR_2g098430 26.220 328 194 13 7 302 3 314 1.55e-13 72.4
MS.gene86109.t1 MTR_6g033675 25.664 339 174 11 12 303 6 313 1.57e-13 72.0
MS.gene86109.t1 MTR_1g029540 23.684 304 193 15 15 301 19 300 1.81e-13 72.0
MS.gene86109.t1 MTR_8g006220 25.148 338 171 11 7 301 3 301 1.88e-13 72.0
MS.gene86109.t1 MTR_8g077590 28.837 215 113 8 113 301 106 306 2.01e-13 72.0
MS.gene86109.t1 MTR_6g033625 25.000 336 182 12 12 304 6 314 2.45e-13 71.6
MS.gene86109.t1 MTR_4g031800 22.293 314 204 8 13 301 12 310 3.46e-13 71.2
MS.gene86109.t1 MTR_3g031450 24.768 323 179 11 10 301 18 307 3.62e-13 71.2
MS.gene86109.t1 MTR_4g128690 24.688 320 193 8 10 303 15 312 5.65e-13 70.5
MS.gene86109.t1 MTR_7g067120 26.974 304 191 12 7 301 6 287 9.11e-13 69.7
MS.gene86109.t1 MTR_8g006230 28.641 206 112 5 119 301 52 245 9.78e-13 68.6
MS.gene86109.t1 MTR_6g033615 24.299 321 189 9 12 304 6 300 1.10e-12 69.7
MS.gene86109.t1 MTR_8g006710 25.074 339 191 14 6 309 2 312 1.32e-12 69.3
MS.gene86109.t1 MTR_6g488280 24.540 326 179 13 12 301 8 302 1.50e-12 69.3
MS.gene86109.t1 MTR_0428s0010 24.540 326 179 13 12 301 8 302 1.50e-12 69.3
MS.gene86109.t1 MTR_6g023665 23.780 328 189 10 7 301 10 309 1.58e-12 68.9
MS.gene86109.t1 MTR_2g035020 23.175 315 200 12 13 300 14 313 3.06e-12 68.2
MS.gene86109.t1 MTR_1g040310 22.642 318 209 8 11 301 16 323 3.24e-12 68.2
MS.gene86109.t1 MTR_6g042310 25.309 324 185 11 10 301 18 316 4.38e-12 67.8
MS.gene86109.t1 MTR_6g013970 50.794 63 27 1 128 190 39 97 6.39e-12 65.1
MS.gene86109.t1 MTR_8g009050 28.436 211 109 9 118 301 108 303 6.81e-12 67.0
MS.gene86109.t1 MTR_8g009073 31.492 181 90 6 144 301 5 174 1.14e-11 65.9
MS.gene86109.t1 MTR_8g090095 24.013 304 198 13 15 301 30 317 1.16e-11 66.6
MS.gene86109.t1 MTR_5g058330 60.870 46 18 0 193 238 24 69 1.52e-11 60.5
MS.gene86109.t1 MTR_5g070040 24.074 324 200 12 7 301 8 314 1.78e-11 65.9
MS.gene86109.t1 MTR_7g046490 35.849 106 53 3 198 301 208 300 2.59e-11 65.5
MS.gene86109.t1 MTR_5g090670 23.529 323 204 9 7 301 2 309 3.10e-11 65.1
MS.gene86109.t1 MTR_8g083280 24.471 331 202 11 4 301 1 316 3.68e-11 64.7
MS.gene86109.t1 MTR_4g128720 23.100 329 192 9 7 301 12 313 3.87e-11 64.7
MS.gene86109.t1 MTR_5g016660 24.316 329 204 13 8 303 8 324 4.43e-11 64.7
MS.gene86109.t1 MTR_7g012120 23.659 317 193 11 13 300 19 315 4.57e-11 64.7
MS.gene86109.t1 MTR_6g033725 25.830 271 134 9 65 304 77 311 4.62e-11 64.7
MS.gene86109.t1 MTR_5g090600 23.077 325 197 12 7 301 2 303 5.56e-11 64.3
MS.gene86109.t1 MTR_6g005600 24.012 329 188 13 8 302 4 304 5.70e-11 64.3
MS.gene86109.t1 MTR_8g074550 23.899 318 199 11 10 301 8 308 5.74e-11 64.3
MS.gene86109.t1 MTR_8g008970 23.148 324 191 10 10 301 6 303 6.28e-11 64.7
MS.gene86109.t1 MTR_4g123553 26.061 330 186 14 5 301 9 313 7.11e-11 63.9
MS.gene86109.t1 MTR_4g117960 22.611 314 201 11 13 300 14 311 7.23e-11 63.9
MS.gene86109.t1 MTR_8g006730 28.061 196 101 8 133 301 122 304 9.35e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86109.t1 AT1G22360 44.186 473 172 10 1 385 1 469 1.96e-123 365
MS.gene86109.t1 AT1G22360 42.650 483 177 9 1 385 1 481 4.77e-123 364
MS.gene86109.t1 AT1G22340 48.817 338 139 3 7 312 10 345 9.46e-116 346
MS.gene86109.t1 AT1G22340 42.466 73 41 1 313 384 412 484 9.72e-13 69.7
MS.gene86109.t1 AT1G22370 51.045 335 125 4 5 307 8 335 2.58e-115 344
MS.gene86109.t1 AT1G22400 50.149 335 132 4 6 307 9 341 2.72e-113 340
MS.gene86109.t1 AT1G22400 41.892 74 42 1 313 385 412 485 1.66e-12 69.3
MS.gene86109.t1 AT1G22380 48.521 338 140 3 7 312 10 345 1.31e-108 327
MS.gene86109.t1 AT1G22380 39.189 74 44 1 313 385 411 484 2.13e-12 68.9
MS.gene86109.t1 AT1G78270 46.064 343 150 4 2 312 5 344 3.62e-102 311
MS.gene86109.t1 AT1G78270 38.028 71 43 1 313 382 411 481 7.17e-11 63.9
MS.gene86109.t1 AT1G22370 55.462 119 52 1 190 307 47 165 3.42e-40 145
MS.gene86109.t1 AT3G46650 28.435 313 182 8 8 307 8 291 2.04e-34 132
MS.gene86109.t1 AT3G21560 25.826 484 232 16 9 384 11 475 2.78e-34 133
MS.gene86109.t1 AT5G59590 30.556 324 180 9 7 307 7 308 3.21e-34 132
MS.gene86109.t1 AT2G36970 29.326 341 190 9 1 305 1 326 3.57e-34 132
MS.gene86109.t1 AT5G59580 30.919 359 179 13 8 339 7 323 5.72e-34 131
MS.gene86109.t1 AT3G46670 30.275 327 175 11 12 311 11 311 2.07e-33 129
MS.gene86109.t1 AT3G46700 29.358 327 182 11 8 311 7 307 4.29e-33 129
MS.gene86109.t1 AT3G02100 28.963 328 197 13 1 299 1 321 1.01e-31 125
MS.gene86109.t1 AT3G46690 28.395 324 188 9 7 307 6 308 4.62e-31 123
MS.gene86109.t1 AT3G11340 27.692 325 190 9 8 311 7 307 2.11e-30 121
MS.gene86109.t1 AT3G46680 28.190 337 178 10 8 311 7 312 3.44e-30 120
MS.gene86109.t1 AT5G05860 30.556 324 181 11 10 311 9 310 1.66e-29 119
MS.gene86109.t1 AT5G38010 27.566 341 191 11 1 310 1 316 4.40e-29 117
MS.gene86109.t1 AT4G15500 28.485 330 181 9 9 304 8 316 4.44e-29 118
MS.gene86109.t1 AT3G55700 29.012 324 178 12 12 307 10 309 6.12e-29 117
MS.gene86109.t1 AT2G28080 29.102 323 183 11 14 305 22 329 1.28e-28 117
MS.gene86109.t1 AT5G38040 28.391 317 179 11 19 310 19 312 3.77e-28 115
MS.gene86109.t1 AT5G05900 26.524 328 191 8 11 309 9 315 4.28e-28 115
MS.gene86109.t1 AT3G46660 29.573 328 178 12 12 311 16 318 9.67e-28 114
MS.gene86109.t1 AT4G15490 28.529 333 188 14 6 304 4 320 1.88e-27 113
MS.gene86109.t1 AT5G05870 28.060 335 183 10 10 311 8 317 7.30e-27 111
MS.gene86109.t1 AT3G46720 30.408 319 174 12 8 302 7 301 7.57e-27 111
MS.gene86109.t1 AT5G05880 26.970 330 193 8 10 314 8 314 1.71e-26 110
MS.gene86109.t1 AT4G15480 25.228 329 188 9 10 302 19 325 2.08e-25 107
MS.gene86109.t1 AT5G05890 27.164 335 196 10 10 317 8 321 1.05e-24 105
MS.gene86109.t1 AT2G26480 26.126 333 180 9 7 307 5 303 1.70e-24 104
MS.gene86109.t1 AT3G53150 25.846 325 207 11 7 303 19 337 2.58e-24 104
MS.gene86109.t1 AT2G36760 28.571 322 190 13 10 301 14 325 1.15e-23 102
MS.gene86109.t1 AT4G01070 28.875 329 174 13 6 301 4 305 3.80e-23 99.8
MS.gene86109.t1 AT4G01070 28.875 329 174 13 6 301 4 305 4.48e-23 100
MS.gene86109.t1 AT2G31750 26.959 319 203 11 1 301 1 307 2.43e-22 98.6
MS.gene86109.t1 AT2G31750 26.959 319 203 11 1 301 1 307 3.03e-22 98.6
MS.gene86109.t1 AT2G36780 29.878 328 178 16 10 301 14 325 3.39e-22 98.6
MS.gene86109.t1 AT2G36800 28.135 327 186 12 10 301 12 324 4.43e-22 98.2
MS.gene86109.t1 AT2G36790 31.437 334 165 15 10 301 13 324 4.47e-22 98.2
MS.gene86109.t1 AT3G55710 27.607 326 184 13 12 307 10 313 7.35e-22 97.4
MS.gene86109.t1 AT2G43840 27.760 317 192 13 4 301 1 299 8.33e-22 97.1
MS.gene86109.t1 AT2G23250 29.642 307 181 10 13 302 1 289 1.88e-21 95.9
MS.gene86109.t1 AT2G15480 26.807 332 209 9 1 303 1 327 1.92e-21 96.3
MS.gene86109.t1 AT2G36770 26.316 323 196 10 10 301 14 325 1.97e-21 96.3
MS.gene86109.t1 AT2G15480 26.807 332 209 9 1 303 1 327 2.31e-21 95.9
MS.gene86109.t1 AT4G34135 28.097 331 192 12 6 301 7 326 2.41e-21 94.4
MS.gene86109.t1 AT4G34131 26.844 339 206 11 1 306 1 330 3.38e-21 95.5
MS.gene86109.t1 AT4G34135 28.097 331 192 12 6 301 7 326 4.35e-21 95.1
MS.gene86109.t1 AT2G43840 27.445 317 193 13 4 301 1 299 8.01e-21 94.0
MS.gene86109.t1 AT1G05680 25.705 319 193 9 10 301 6 307 9.27e-21 94.0
MS.gene86109.t1 AT2G23260 28.783 337 175 12 1 302 1 307 1.38e-20 93.6
MS.gene86109.t1 AT2G43820 26.061 330 181 14 4 301 1 299 1.42e-20 93.2
MS.gene86109.t1 AT1G05675 25.472 318 195 8 10 301 6 307 2.46e-20 92.8
MS.gene86109.t1 AT2G15490 28.125 320 196 9 10 300 7 321 2.72e-20 92.8
MS.gene86109.t1 AT2G15490 28.125 320 196 9 10 300 7 321 3.21e-20 92.4
MS.gene86109.t1 AT5G37950 25.397 315 175 11 27 310 3 288 1.07e-19 89.7
MS.gene86109.t1 AT5G37950 26.073 303 182 11 27 310 3 282 2.66e-19 88.6
MS.gene86109.t1 AT2G31790 25.776 322 195 11 7 301 5 309 7.67e-19 88.2
MS.gene86109.t1 AT2G36750 26.332 319 200 10 10 301 10 320 2.90e-18 86.7
MS.gene86109.t1 AT1G01420 27.445 317 188 10 9 301 7 305 3.56e-18 86.3
MS.gene86109.t1 AT1G01420 27.445 317 188 10 9 301 10 308 3.98e-18 86.3
MS.gene86109.t1 AT4G14090 25.697 323 194 12 3 301 6 306 1.79e-17 84.3
MS.gene86109.t1 AT3G53160 26.748 329 187 14 10 301 8 319 3.02e-17 83.6
MS.gene86109.t1 AT1G05560 25.000 312 193 11 9 300 4 294 5.28e-17 82.8
MS.gene86109.t1 AT1G05560 25.000 312 193 11 9 300 54 344 6.62e-17 82.8
MS.gene86109.t1 AT1G05530 26.415 318 194 14 8 304 3 301 8.25e-17 82.0
MS.gene86109.t1 AT1G01390 28.571 336 177 14 9 309 24 331 2.60e-16 80.9
MS.gene86109.t1 AT1G01390 28.571 336 177 14 9 309 7 314 2.83e-16 80.5
MS.gene86109.t1 AT4G34138 26.946 334 185 12 8 300 9 324 7.06e-16 79.3
MS.gene86109.t1 AT2G23210 27.957 279 168 10 1 261 1 264 2.69e-15 76.3
MS.gene86109.t1 AT1G24100 23.839 323 198 12 8 301 9 312 3.52e-15 77.4
MS.gene86109.t1 AT2G30140 25.620 363 214 15 6 343 9 340 1.29e-13 72.4
MS.gene86109.t1 AT1G10400 24.625 333 206 12 8 308 5 324 3.34e-12 68.2
MS.gene86109.t1 AT3G16520 26.570 207 116 8 119 301 113 307 5.96e-12 67.4
MS.gene86109.t1 AT5G17040 23.988 321 187 9 10 301 5 297 6.01e-12 67.4
MS.gene86109.t1 AT3G16520 26.570 207 116 8 119 301 113 307 6.54e-12 67.0
MS.gene86109.t1 AT1G51210 26.074 326 195 15 8 308 18 322 8.04e-12 67.0
MS.gene86109.t1 AT3G16520 26.570 207 116 8 119 301 113 307 8.47e-12 67.0
MS.gene86109.t1 AT4G15280 25.610 328 181 11 12 301 6 308 2.80e-11 65.5
MS.gene86109.t1 AT4G15280 25.610 328 181 11 12 301 38 340 3.23e-11 65.1
MS.gene86109.t1 AT5G03490 25.680 331 199 10 6 308 15 326 5.84e-11 64.3
MS.gene86109.t1 AT3G21760 24.611 321 200 10 12 301 6 315 6.12e-11 64.3

Find 78 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGTAATGAATGGAAAAT+TGG 0.201577 6.3:-8903548 MS.gene86109:CDS
GAAGTTCACAATAGGGTTTA+AGG 0.250937 6.3:+8905487 None:intergenic
GAACTTGGACAAAGTGATTA+TGG 0.273437 6.3:-8903372 MS.gene86109:CDS
GCAAAGCTTCTTCACCTTAG+AGG 0.277169 6.3:-8905699 MS.gene86109:CDS
ATTCATCAATTGGACTCTTT+AGG 0.300052 6.3:-8903974 MS.gene86109:CDS
ATTGATGAATTTGTGGAGTT+TGG 0.329616 6.3:+8903987 None:intergenic
ACTCTTTAGGTTCCAACCTT+TGG 0.334307 6.3:-8903961 MS.gene86109:CDS
ACTAAAGTAGATTGGATTCC+AGG 0.336076 6.3:-8904220 MS.gene86109:intron
AAAATCAGTCAAACCATCTA+AGG 0.342054 6.3:+8905608 None:intergenic
TTTCCTTCTCTTTATGCCAT+TGG 0.345889 6.3:-8904031 MS.gene86109:CDS
AACCATTTCTGTGGATCATT+AGG 0.347545 6.3:-8903802 MS.gene86109:CDS
TCTTGTAAGAAGTTCACAAT+AGG 0.353786 6.3:+8905479 None:intergenic
GTTGGAATTTGCTTGGGGTT+TGG 0.365245 6.3:-8903837 MS.gene86109:CDS
GCAACTGTTGGAATTTGCTT+GGG 0.371369 6.3:-8903843 MS.gene86109:CDS
AACTCCACAAATTCATCAAT+TGG 0.372524 6.3:-8903984 MS.gene86109:CDS
AGAGGTCCAAATGCCTTAGA+TGG 0.381340 6.3:-8905621 MS.gene86109:CDS
GTTTGGAAACTAAAGTAGAT+TGG 0.389137 6.3:-8904228 MS.gene86109:CDS
GAAGTGATAGCTGGAGATAA+AGG 0.390078 6.3:-8903473 MS.gene86109:CDS
TTTGTTGTTTATGTAAATTT+CGG 0.393015 6.3:-8903890 MS.gene86109:CDS
TTATCTAACAAATGGGTGTT+TGG 0.393764 6.3:-8904245 MS.gene86109:CDS
GTCAAACCATCTAAGGCATT+TGG 0.401739 6.3:+8905615 None:intergenic
GGATTTATATGTCCTTGAAA+TGG 0.401897 6.3:+8905735 None:intergenic
TCTAGTGGTGTTAGACCATC+TGG 0.403590 6.3:+8905570 None:intergenic
GATGAGAGTTATCTAACAAA+TGG 0.408498 6.3:-8904253 MS.gene86109:CDS
TCAGAAACTAAGCAAGTAAC+TGG 0.411788 6.3:+8905432 None:intergenic
AGCAACTGTTGGAATTTGCT+TGG 0.413433 6.3:-8903844 MS.gene86109:CDS
CTTGTAAGAAGTTCACAATA+GGG 0.421480 6.3:+8905480 None:intergenic
TTGATTCCAGCTCCATTTCA+AGG 0.427559 6.3:-8905747 MS.gene86109:CDS
GTAGATATATTTGTAATGAA+TGG 0.429366 6.3:-8903556 MS.gene86109:intron
AGGTTATGTAAAATCCTCTA+AGG 0.431340 6.3:+8905685 None:intergenic
ATTAGGCCTGATCTTGTCAT+TGG 0.431441 6.3:-8903785 MS.gene86109:CDS
AGTATCTTCTTTCCAAAGGT+TGG 0.432689 6.3:+8903949 None:intergenic
GGAGTTTGGTTTAATAATGA+AGG 0.439181 6.3:+8904001 None:intergenic
GAGTCCAATTGATGAATTTG+TGG 0.441922 6.3:+8903980 None:intergenic
AACAACAAATCTCGGCTCCT+TGG 0.447434 6.3:+8903904 None:intergenic
GAGCCACCAATGACAAGATC+AGG 0.448507 6.3:+8903779 None:intergenic
CTTCGCTCCTTTGTAGAAAG+TGG 0.450642 6.3:-8905309 MS.gene86109:CDS
AGGCCTGATCTTGTCATTGG+TGG 0.464524 6.3:-8903782 MS.gene86109:CDS
TTGATTAATGAAGTGATAGC+TGG 0.469383 6.3:-8903482 MS.gene86109:CDS
GGCCTAATGATCCACAGAAA+TGG 0.484174 6.3:+8903800 None:intergenic
GCAAATTCCAACAGTTGCTC+TGG 0.484462 6.3:+8903848 None:intergenic
TGGTTTAATAATGAAGGTAA+AGG 0.501456 6.3:+8904007 None:intergenic
TAATGAATGGAAAATTGGTA+TGG 0.503612 6.3:-8903543 MS.gene86109:CDS
ATGAGAGTTATCTAACAAAT+GGG 0.508755 6.3:-8904252 MS.gene86109:CDS
ATATGTCCTTGAAATGGAGC+TGG 0.513623 6.3:+8905741 None:intergenic
TGGTGTTAGACCATCTGGTA+TGG 0.517459 6.3:+8905575 None:intergenic
TTTACATAAACAACAAATCT+CGG 0.528004 6.3:+8903896 None:intergenic
ATAAACCTAGTACCTTTGAA+TGG 0.538564 6.3:+8905279 None:intergenic
CTTATAGATTGACAAAGAGA+TGG 0.541716 6.3:+8905519 None:intergenic
TGATAGCTGGAGATAAAGGA+AGG 0.546702 6.3:-8903469 MS.gene86109:CDS
GCAAGTAACTGGTGGAACAT+TGG 0.557037 6.3:+8905443 None:intergenic
CAACTGTTGGAATTTGCTTG+GGG 0.557924 6.3:-8903842 MS.gene86109:CDS
TGCCTTCTTCTTCAACTCCG+TGG 0.558040 6.3:+8903430 None:intergenic
ACTCAGTATCTTCTTTCCAA+AGG 0.563526 6.3:+8903945 None:intergenic
AAGATACTGAGTGTCTTGAA+TGG 0.564189 6.3:-8903934 MS.gene86109:CDS
TGGTTGTTCATACATGAACT+TGG 0.565181 6.3:-8903387 MS.gene86109:CDS
AGCTTTGAAACCATACCAGA+TGG 0.567356 6.3:-8905585 MS.gene86109:CDS
GAATGTGAAGAGAGACGAGT+TGG 0.568604 6.3:-8903510 MS.gene86109:CDS
AGCCACGGAGTTGAAGAAGA+AGG 0.570936 6.3:-8903432 MS.gene86109:CDS
TAATGAAGGTAAAGGACCAA+TGG 0.579333 6.3:+8904015 None:intergenic
GGACCAATGGCATAAAGAGA+AGG 0.581234 6.3:+8904028 None:intergenic
GGAGTTGAAGAAGAAGGCAG+AGG 0.585984 6.3:-8903426 MS.gene86109:CDS
GAGATAAAGGAAGGAAAATG+AGG 0.588463 6.3:-8903460 MS.gene86109:CDS
TCTTGAATGGCTTAAATCCA+AGG 0.593249 6.3:-8903921 MS.gene86109:CDS
TGTATAGTAAAGCTCATACA+AGG 0.603458 6.3:+8905408 None:intergenic
ATAAAGAGAAGGAAACATAG+AGG 0.607505 6.3:+8904039 None:intergenic
AGTGGTATCATACCATTCAA+AGG 0.609174 6.3:-8905291 MS.gene86109:intron
CACTTTCTACAAAGGAGCGA+AGG 0.610225 6.3:+8905310 None:intergenic
TATGACACCAGAGCAACTGT+TGG 0.617761 6.3:-8903855 MS.gene86109:CDS
GCTGGAATCAACACAGCATG+TGG 0.617848 6.3:+8905759 None:intergenic
TATGATACCACTTTCTACAA+AGG 0.625251 6.3:+8905302 None:intergenic
GAAACTAAGCAAGTAACTGG+TGG 0.626441 6.3:+8905435 None:intergenic
GCAGAGGAGATCACTAGACC+AGG 0.632247 6.3:-8903410 MS.gene86109:CDS
ACATCACCATCACTTTCTAG+TGG 0.651903 6.3:+8905555 None:intergenic
TTCATGTATGAACAACCACC+TGG 0.668591 6.3:+8903392 None:intergenic
ATTGTATTCAGTGTTGACAA+AGG 0.675767 6.3:+8905665 None:intergenic
CTAACACCACTAGAAAGTGA+TGG 0.680243 6.3:-8905561 MS.gene86109:CDS
GAGGAGATCACTAGACCAGG+TGG 0.705011 6.3:-8903407 MS.gene86109:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG + chr6.3:8904141-8904122 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr6.3:8904142-8904123 None:intergenic 0.0%
!! CTATATATATATATTAAAGA+AGG + chr6.3:8904452-8904471 None:intergenic 10.0%
!!! TATTACTAATGATAATTTTA+CGG - chr6.3:8904574-8904593 MS.gene86109:intron 10.0%
!!! TATTTTAAAAATTAGTGTAA+AGG - chr6.3:8904546-8904565 MS.gene86109:intron 10.0%
!! ATATATAGTTATTCCAATTT+CGG - chr6.3:8904464-8904483 MS.gene86109:intron 15.0%
!! ATATATATATATATATGAGG+AGG - chr6.3:8904172-8904191 MS.gene86109:intron 15.0%
!! TACAAAAATTAATAACATGA+AGG + chr6.3:8904846-8904865 None:intergenic 15.0%
!! TATATATATATATATGAGGA+GGG - chr6.3:8904173-8904192 MS.gene86109:intron 15.0%
!! TTGCTTAGAAAAAAAATTTA+AGG - chr6.3:8903941-8903960 MS.gene86109:CDS 15.0%
!!! TATTTTTTAAATTTGATCGT+TGG - chr6.3:8904245-8904264 MS.gene86109:CDS 15.0%
!!! TGTTTAAAACATACTTTTAT+TGG - chr6.3:8904015-8904034 MS.gene86109:CDS 15.0%
!!! TTTGTTGTTTATGTAAATTT+CGG - chr6.3:8905242-8905261 MS.gene86109:intron 15.0%
!! AATATATGTCAAGACTTAAT+CGG + chr6.3:8904514-8904533 None:intergenic 20.0%
!! ATGAAAAATAGAGAACATTT+GGG + chr6.3:8903771-8903790 None:intergenic 20.0%
!! ATTTGTAATGAATGGAAAAT+TGG - chr6.3:8905584-8905603 MS.gene86109:CDS 20.0%
!! GTAGATATATTTGTAATGAA+TGG - chr6.3:8905576-8905595 MS.gene86109:CDS 20.0%
!! TTACAAATATATCTACAGTT+TGG + chr6.3:8905572-8905591 None:intergenic 20.0%
!! TTTACATAAACAACAAATCT+CGG + chr6.3:8905239-8905258 None:intergenic 20.0%
!!! ACAAATGAAATTTTAGATAG+AGG - chr6.3:8905398-8905417 MS.gene86109:CDS 20.0%
!!! CTTTTATTGGATATGTTTTT+TGG - chr6.3:8904028-8904047 MS.gene86109:CDS 20.0%
! AATTCTCACAGTATCAATTT+CGG - chr6.3:8904414-8904433 MS.gene86109:intron 25.0%
! ATATATGTCAAGACTTAATC+GGG + chr6.3:8904513-8904532 None:intergenic 25.0%
! ATGAGAGTTATCTAACAAAT+GGG - chr6.3:8904880-8904899 MS.gene86109:intron 25.0%
! ATTGTAAAAAACCATTTCTG+TGG - chr6.3:8905321-8905340 MS.gene86109:CDS 25.0%
! GATGAAAAATAGAGAACATT+TGG + chr6.3:8903772-8903791 None:intergenic 25.0%
! TAAGAGGACAAATGATATTA+TGG - chr6.3:8904971-8904990 MS.gene86109:intron 25.0%
! TAATGAATGGAAAATTGGTA+TGG - chr6.3:8905589-8905608 MS.gene86109:CDS 25.0%
! TGGTTTAATAATGAAGGTAA+AGG + chr6.3:8905128-8905147 None:intergenic 25.0%
!! TACTAATGATAATTTTACGG+TGG - chr6.3:8904577-8904596 MS.gene86109:intron 25.0%
!!! AGTTTTGTAAAAATTTGTGC+AGG + chr6.3:8904744-8904763 None:intergenic 25.0%
!!! CAGAAATGGTTTTTTACAAT+TGG + chr6.3:8905321-8905340 None:intergenic 25.0%
!!! CTTTGCACTTTGAAATTATA+AGG - chr6.3:8904620-8904639 MS.gene86109:intron 25.0%
AAAAATGGCCAACATAACAT+CGG + chr6.3:8905536-8905555 None:intergenic 30.0%
AAAATCAGTCAAACCATCTA+AGG + chr6.3:8903527-8903546 None:intergenic 30.0%
AACTCCACAAATTCATCAAT+TGG - chr6.3:8905148-8905167 MS.gene86109:intron 30.0%
AGCTTTGCAAGTTTGAAAAA+TGG + chr6.3:8903421-8903440 None:intergenic 30.0%
AGGTTATGTAAAATCCTCTA+AGG + chr6.3:8903450-8903469 None:intergenic 30.0%
ATAAACCTAGTACCTTTGAA+TGG + chr6.3:8903856-8903875 None:intergenic 30.0%
ATAAAGAGAAGGAAACATAG+AGG + chr6.3:8905096-8905115 None:intergenic 30.0%
ATTCATCAATTGGACTCTTT+AGG - chr6.3:8905158-8905177 MS.gene86109:intron 30.0%
ATTGATGAATTTGTGGAGTT+TGG + chr6.3:8905148-8905167 None:intergenic 30.0%
CAAATATATCTACAGTTTGG+TGG + chr6.3:8905569-8905588 None:intergenic 30.0%
CTCTCCTATATATATAGTCT+GGG - chr6.3:8904343-8904362 MS.gene86109:intron 30.0%
CTTATAGATTGACAAAGAGA+TGG + chr6.3:8903616-8903635 None:intergenic 30.0%
CTTGTAAGAAGTTCACAATA+GGG + chr6.3:8903655-8903674 None:intergenic 30.0%
GATGAGAGTTATCTAACAAA+TGG - chr6.3:8904879-8904898 MS.gene86109:intron 30.0%
GGATTTATATGTCCTTGAAA+TGG + chr6.3:8903400-8903419 None:intergenic 30.0%
GTTTGGAAACTAAAGTAGAT+TGG - chr6.3:8904904-8904923 MS.gene86109:intron 30.0%
TATGATACCACTTTCTACAA+AGG + chr6.3:8903833-8903852 None:intergenic 30.0%
TCGAGTAAAACGATATTGAA+CGG + chr6.3:8904221-8904240 None:intergenic 30.0%
TCTCCTATATATATAGTCTG+GGG - chr6.3:8904344-8904363 MS.gene86109:intron 30.0%
TCTCTCCTATATATATAGTC+TGG - chr6.3:8904342-8904361 MS.gene86109:intron 30.0%
TCTTGTAAGAAGTTCACAAT+AGG + chr6.3:8903656-8903675 None:intergenic 30.0%
TGTATAGTAAAGCTCATACA+AGG + chr6.3:8903727-8903746 None:intergenic 30.0%
TTATCTAACAAATGGGTGTT+TGG - chr6.3:8904887-8904906 MS.gene86109:intron 30.0%
TTGATTAATGAAGTGATAGC+TGG - chr6.3:8905650-8905669 MS.gene86109:CDS 30.0%
! AAACTTTTGCTCAAATCAAG+AGG - chr6.3:8903493-8903512 MS.gene86109:CDS 30.0%
! GGAGTTTGGTTTAATAATGA+AGG + chr6.3:8905134-8905153 None:intergenic 30.0%
! TACTGCTTAGTGTTTTATGT+GGG - chr6.3:8904081-8904100 MS.gene86109:CDS 30.0%
! TTACTGCTTAGTGTTTTATG+TGG - chr6.3:8904080-8904099 MS.gene86109:CDS 30.0%
!! ATTGTATTCAGTGTTGACAA+AGG + chr6.3:8903470-8903489 None:intergenic 30.0%
!!! TTTTTTACACACACCGAAAT+TGG + chr6.3:8904480-8904499 None:intergenic 30.0%
AACCATTTCTGTGGATCATT+AGG - chr6.3:8905330-8905349 MS.gene86109:CDS 35.0%
AAGATACTGAGTGTCTTGAA+TGG - chr6.3:8905198-8905217 MS.gene86109:intron 35.0%
ACACCCCAGACTATATATAT+AGG + chr6.3:8904350-8904369 None:intergenic 35.0%
ACTAAAGTAGATTGGATTCC+AGG - chr6.3:8904912-8904931 MS.gene86109:intron 35.0%
ACTCAGTATCTTCTTTCCAA+AGG + chr6.3:8905190-8905209 None:intergenic 35.0%
AGGACATTCTTGACTATAAG+AGG - chr6.3:8904955-8904974 MS.gene86109:intron 35.0%
AGTATCTTCTTTCCAAAGGT+TGG + chr6.3:8905186-8905205 None:intergenic 35.0%
AGTGGTATCATACCATTCAA+AGG - chr6.3:8903841-8903860 MS.gene86109:CDS 35.0%
ATAAGGTCAAACTCTTACCA+AGG - chr6.3:8904637-8904656 MS.gene86109:intron 35.0%
GAACTTGGACAAAGTGATTA+TGG - chr6.3:8905760-8905779 MS.gene86109:CDS 35.0%
GAAGTTCACAATAGGGTTTA+AGG + chr6.3:8903648-8903667 None:intergenic 35.0%
GAGATAAAGGAAGGAAAATG+AGG - chr6.3:8905672-8905691 MS.gene86109:CDS 35.0%
GAGTCCAATTGATGAATTTG+TGG + chr6.3:8905155-8905174 None:intergenic 35.0%
GATATTGAACGGTGTAACAT+TGG + chr6.3:8904210-8904229 None:intergenic 35.0%
GCAAAGAGTTCAAATCCTTT+AGG + chr6.3:8904606-8904625 None:intergenic 35.0%
GGTCAAAAACAAGTGAATGT+AGG - chr6.3:8904049-8904068 MS.gene86109:CDS 35.0%
TAATGAAGGTAAAGGACCAA+TGG + chr6.3:8905120-8905139 None:intergenic 35.0%
TCAGAAACTAAGCAAGTAAC+TGG + chr6.3:8903703-8903722 None:intergenic 35.0%
TCTTGAATGGCTTAAATCCA+AGG - chr6.3:8905211-8905230 MS.gene86109:intron 35.0%
TGGTTGTTCATACATGAACT+TGG - chr6.3:8905745-8905764 MS.gene86109:CDS 35.0%
TTCCAGGTTTGAGAAACTTT+CGG - chr6.3:8904928-8904947 MS.gene86109:intron 35.0%
TTTCCTTCTCTTTATGCCAT+TGG - chr6.3:8905101-8905120 MS.gene86109:intron 35.0%
TTTGAGAAACTTTCGGTTGA+AGG - chr6.3:8904935-8904954 MS.gene86109:intron 35.0%
! ACGGTTCGATTGTTATTAAC+TGG + chr6.3:8904689-8904708 None:intergenic 35.0%
! ATATATATAGTCTGGGGTGT+TGG - chr6.3:8904350-8904369 MS.gene86109:intron 35.0%
! ATTTTACGGTGGTTTCCTAA+AGG - chr6.3:8904588-8904607 MS.gene86109:intron 35.0%
!! TCATACCATTCAAAGGTACT+AGG - chr6.3:8903848-8903867 MS.gene86109:CDS 35.0%
!!! GGTGAGAGCTTTTAATTTGA+CGG + chr6.3:8904708-8904727 None:intergenic 35.0%
AACCGAAAGTTTCTCAAACC+TGG + chr6.3:8904933-8904952 None:intergenic 40.0%
ACATCACCATCACTTTCTAG+TGG + chr6.3:8903580-8903599 None:intergenic 40.0%
ATAGAGGCCTAATAGCAAGT+TGG - chr6.3:8905414-8905433 MS.gene86109:CDS 40.0%
ATATGTCCTTGAAATGGAGC+TGG + chr6.3:8903394-8903413 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG - chr6.3:8905347-8905366 MS.gene86109:CDS 40.0%
CTAACACCACTAGAAAGTGA+TGG - chr6.3:8903571-8903590 MS.gene86109:intron 40.0%
CTCACAGTATCAATTTCGGT+GGG - chr6.3:8904418-8904437 MS.gene86109:intron 40.0%
GAAAATGAGGCAAAAAGCCA+CGG - chr6.3:8905685-8905704 MS.gene86109:CDS 40.0%
GAAACTAAGCAAGTAACTGG+TGG + chr6.3:8903700-8903719 None:intergenic 40.0%
GAAGTGATAGCTGGAGATAA+AGG - chr6.3:8905659-8905678 MS.gene86109:CDS 40.0%
GATTCTTGACTCATTGTGGA+TGG - chr6.3:8905477-8905496 MS.gene86109:CDS 40.0%
TCAAGAATCCTCCGATTGAA+GGG + chr6.3:8905466-8905485 None:intergenic 40.0%
TCTATGAGTTATCAGCTCCT+TGG + chr6.3:8904657-8904676 None:intergenic 40.0%
TCTCACAGTATCAATTTCGG+TGG - chr6.3:8904417-8904436 MS.gene86109:intron 40.0%
TGATAGCTGGAGATAAAGGA+AGG - chr6.3:8905663-8905682 MS.gene86109:CDS 40.0%
TGGTTCAACACTTTCTCTTG+TGG + chr6.3:8905443-8905462 None:intergenic 40.0%
TTCATGTATGAACAACCACC+TGG + chr6.3:8905743-8905762 None:intergenic 40.0%
TTGATTCCAGCTCCATTTCA+AGG - chr6.3:8903385-8903404 MS.gene86109:CDS 40.0%
! AACCACTGAAAGCATATGTG+CGG - chr6.3:8905505-8905524 MS.gene86109:CDS 40.0%
! ACTCTTTAGGTTCCAACCTT+TGG - chr6.3:8905171-8905190 MS.gene86109:intron 40.0%
! AGCAACTGTTGGAATTTGCT+TGG - chr6.3:8905288-8905307 MS.gene86109:intron 40.0%
! CAACTGTTGGAATTTGCTTG+GGG - chr6.3:8905290-8905309 MS.gene86109:intron 40.0%
! CATGTGGTTTTCTGTTTGCA+AGG + chr6.3:8903360-8903379 None:intergenic 40.0%
! GCAACTGTTGGAATTTGCTT+GGG - chr6.3:8905289-8905308 MS.gene86109:intron 40.0%
! GTCAAACCATCTAAGGCATT+TGG + chr6.3:8903520-8903539 None:intergenic 40.0%
!! AGCTTTGAAACCATACCAGA+TGG - chr6.3:8903547-8903566 MS.gene86109:CDS 40.0%
AACAACAAATCTCGGCTCCT+TGG + chr6.3:8905231-8905250 None:intergenic 45.0%
AGAGGTCCAAATGCCTTAGA+TGG - chr6.3:8903511-8903530 MS.gene86109:CDS 45.0%
ATTGAACCTGAGACCTTGAG+AGG + chr6.3:8904397-8904416 None:intergenic 45.0%
CACTTTCTACAAAGGAGCGA+AGG + chr6.3:8903825-8903844 None:intergenic 45.0%
CTTCGCTCCTTTGTAGAAAG+TGG - chr6.3:8903823-8903842 MS.gene86109:CDS 45.0%
GAATGTGAAGAGAGACGAGT+TGG - chr6.3:8905622-8905641 MS.gene86109:CDS 45.0%
GCAAAGCTTCTTCACCTTAG+AGG - chr6.3:8903433-8903452 MS.gene86109:CDS 45.0%
GCAAATTCCAACAGTTGCTC+TGG + chr6.3:8905287-8905306 None:intergenic 45.0%
GCAAGTAACTGGTGGAACAT+TGG + chr6.3:8903692-8903711 None:intergenic 45.0%
GGACCAATGGCATAAAGAGA+AGG + chr6.3:8905107-8905126 None:intergenic 45.0%
GGAGGATTCTTGACTCATTG+TGG - chr6.3:8905473-8905492 MS.gene86109:CDS 45.0%
GGCCTAATGATCCACAGAAA+TGG + chr6.3:8905335-8905354 None:intergenic 45.0%
GGTGGCTGATCAGCAAAAAA+TGG + chr6.3:8905551-8905570 None:intergenic 45.0%
GTCAAGAATCCTCCGATTGA+AGG + chr6.3:8905467-8905486 None:intergenic 45.0%
GTGTTGAACCACCCTTCAAT+CGG - chr6.3:8905452-8905471 MS.gene86109:CDS 45.0%
TATGACACCAGAGCAACTGT+TGG - chr6.3:8905277-8905296 MS.gene86109:intron 45.0%
TGTGCAGGTGATCATCTTCT+CGG + chr6.3:8904729-8904748 None:intergenic 45.0%
! ACCACTGAAAGCATATGTGC+GGG - chr6.3:8905506-8905525 MS.gene86109:CDS 45.0%
! GTTGGAATTTGCTTGGGGTT+TGG - chr6.3:8905295-8905314 MS.gene86109:CDS 45.0%
! TCTAGTGGTGTTAGACCATC+TGG + chr6.3:8903565-8903584 None:intergenic 45.0%
! TGGTGTTAGACCATCTGGTA+TGG + chr6.3:8903560-8903579 None:intergenic 45.0%
!! GTGGACACCAACTTGCTATT+AGG + chr6.3:8905424-8905443 None:intergenic 45.0%
!! TATATATATATATATATATG+AGG - chr6.3:8904169-8904188 MS.gene86109:intron 5.0%
!! TATATATATATATTAAAGAA+GGG + chr6.3:8904451-8904470 None:intergenic 5.0%
!!! CTAATTTTTAAAATATAAAA+TGG + chr6.3:8904541-8904560 None:intergenic 5.0%
AGAATCCTCCGATTGAAGGG+TGG + chr6.3:8905463-8905482 None:intergenic 50.0%
AGCCACGGAGTTGAAGAAGA+AGG - chr6.3:8905700-8905719 MS.gene86109:CDS 50.0%
AGGCCTGATCTTGTCATTGG+TGG - chr6.3:8905350-8905369 MS.gene86109:CDS 50.0%
CTTAGAGTGTGCTCCTCTCA+AGG - chr6.3:8904381-8904400 MS.gene86109:intron 50.0%
GAGCCACCAATGACAAGATC+AGG + chr6.3:8905356-8905375 None:intergenic 50.0%
GCTGGAATCAACACAGCATG+TGG + chr6.3:8903376-8903395 None:intergenic 50.0%
GGAGTTGAAGAAGAAGGCAG+AGG - chr6.3:8905706-8905725 MS.gene86109:CDS 50.0%
TCCCGCACATATGCTTTCAG+TGG + chr6.3:8905510-8905529 None:intergenic 50.0%
TGCCTTCTTCTTCAACTCCG+TGG + chr6.3:8905705-8905724 None:intergenic 50.0%
TTGAACCACCCTTCAATCGG+AGG - chr6.3:8905455-8905474 MS.gene86109:CDS 50.0%
! CTTGAGAGGAGCACACTCTA+AGG + chr6.3:8904383-8904402 None:intergenic 50.0%
!! ATATAGTCTGGGGTGTTGGC+TGG - chr6.3:8904354-8904373 MS.gene86109:intron 50.0%
GAGGAGATCACTAGACCAGG+TGG - chr6.3:8905725-8905744 MS.gene86109:CDS 55.0%
GCAGAGGAGATCACTAGACC+AGG - chr6.3:8905722-8905741 MS.gene86109:CDS 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - chr6.3:8904388-8904407 MS.gene86109:intron 55.0%
!! CGGGAGTGCCGATGTTATGT+TGG - chr6.3:8905525-8905544 MS.gene86109:CDS 55.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 8903349 8905805 8903349 ID=MS.gene86109
chr6.3 mRNA 8903349 8905805 8903349 ID=MS.gene86109.t1;Parent=MS.gene86109
chr6.3 exon 8905292 8905805 8905292 ID=MS.gene86109.t1.exon1;Parent=MS.gene86109.t1
chr6.3 CDS 8905292 8905805 8905292 ID=cds.MS.gene86109.t1;Parent=MS.gene86109.t1
chr6.3 exon 8904221 8904274 8904221 ID=MS.gene86109.t1.exon2;Parent=MS.gene86109.t1
chr6.3 CDS 8904221 8904274 8904221 ID=cds.MS.gene86109.t1;Parent=MS.gene86109.t1
chr6.3 exon 8903770 8904136 8903770 ID=MS.gene86109.t1.exon3;Parent=MS.gene86109.t1
chr6.3 CDS 8903770 8904136 8903770 ID=cds.MS.gene86109.t1;Parent=MS.gene86109.t1
chr6.3 exon 8903349 8903574 8903349 ID=MS.gene86109.t1.exon4;Parent=MS.gene86109.t1
chr6.3 CDS 8903349 8903574 8903349 ID=cds.MS.gene86109.t1;Parent=MS.gene86109.t1
Gene Sequence

>MS.gene86109

ATGGGAAACCTTGCAAACAGAAAACCACATGCTGTGTTGATTCCAGCTCCATTTCAAGGACATATAAATCCATTTTTCAAACTTGCAAAGCTTCTTCACCTTAGAGGATTTTACATAACCTTTGTCAACACTGAATACAATCACAAACTTTTGCTCAAATCAAGAGGTCCAAATGCCTTAGATGGTTTGACTGATTTTAGCTTTGAAACCATACCAGATGGTCTAACACCACTAGAAAGTGATGGTGATGTTAGTCAAGATGTACCATCTCTTTGTCAATCTATAAGAAAGAATTTCCTTAAACCCTATTGTGAACTTCTTACAAGAATTAATCACTCTACCAATGTTCCACCAGTTACTTGCTTAGTTTCTGATCCTTGTATGAGCTTTACTATACAAGCTGCTGAAGAATTTGCAGTCCCAAATGTTCTCTATTTTTCATCAAGTGCATGTTCTTTATTGATTGTTATGTACCTTCGCTCCTTTGTAGAAAGTGGTATCATACCATTCAAAGGTACTAGGTTTATTTTTATTAATAGATAATAGTCTTTTTTATAAAAGCACATTACATACATACATACATACATACATATTGCTTAGAAAAAAAATTTAAGGAAACATGTTTCTCATGTTTTGTCTAAAAATGAAATTTACAAATTTATCATTTGTTTAAAACATACTTTTATTGGATATGTTTTTTGGTCAAAAACAAGTGAATGTAGGTTGTTAATTTACTGCTTAGTGTTTTATGTGGGTGTAATTTAGCAACACCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGAGGAGGGATGAAGTTACACCAATGTTACACCGTTCAATATCGTTTTACTCGATACATATTTTTTAAATTTGATCGTTGGATTGTTAGTTTATATCATATAGATCATTCACATAAATTTTTATAAAAATTTATAATCATTTGATATGTTATTGATCTCTCCTATATATATAGTCTGGGGTGTTGGCTGGAGACCTTAGAGTGTGCTCCTCTCAAGGTCTCAGGTTCAATTCTCACAGTATCAATTTCGGTGGGCTAGCTTCCCTTCTTTAATATATATATATAGTTATTCCAATTTCGGTGTGTGTAAAAAATTAACTTACTCCCGATTAAGTCTTGACATATATTTATTCCATTTTATATTTTAAAAATTAGTGTAAAGGAAAATTATTACTAATGATAATTTTACGGTGGTTTCCTAAAGGATTTGAACTCTTTGCACTTTGAAATTATAAGGTCAAACTCTTACCAAGGAGCTGATAACTCATAGACTAATTAATCCAGTTAATAACAATCGAACCGTCAAATTAAAAGCTCTCACCGAGAAGATGATCACCTGCACAAATTTTTACAAAACTTTCGTTGAATGTATAGCAACTTATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAACCTTCATGTTATTAATTTTTGTACTTATGATATGCAGATGAGAGTTATCTAACAAATGGGTGTTTGGAAACTAAAGTAGATTGGATTCCAGGTTTGAGAAACTTTCGGTTGAAGGACATTCTTGACTATAAGAGGACAAATGATATTATGGTAGAATTCTATATTGAAATTGCAGATAGAGTTAAAAGAGACTCTACTATTCTTTTGAATACTTTCAATGAACTTGAGAGTGATGTAATAAATGCTCTCTCCTCTATGTTTCCTTCTCTTTATGCCATTGGTCCTTTACCTTCATTATTAAACCAAACTCCACAAATTCATCAATTGGACTCTTTAGGTTCCAACCTTTGGAAAGAAGATACTGAGTGTCTTGAATGGCTTAAATCCAAGGAGCCGAGATTTGTTGTTTATGTAAATTTCGGCAGTATTACAGTTATGACACCAGAGCAACTGTTGGAATTTGCTTGGGGTTTGGCCAATTGTAAAAAACCATTTCTGTGGATCATTAGGCCTGATCTTGTCATTGGTGGCTCACTGATTTTGTCATATGAGTTTACAAATGAAATTTTAGATAGAGGCCTAATAGCAAGTTGGTGTCCACAAGAGAAAGTGTTGAACCACCCTTCAATCGGAGGATTCTTGACTCATTGTGGATGGAACTCAACCACTGAAAGCATATGTGCGGGAGTGCCGATGTTATGTTGGCCATTTTTTGCTGATCAGCCACCAAACTGTAGATATATTTGTAATGAATGGAAAATTGGTATGGAAATCGATACGAATGTGAAGAGAGACGAGTTGGCGAAGTTGATTAATGAAGTGATAGCTGGAGATAAAGGAAGGAAAATGAGGCAAAAAGCCACGGAGTTGAAGAAGAAGGCAGAGGAGATCACTAGACCAGGTGGTTGTTCATACATGAACTTGGACAAAGTGATTATGGAAATGTTGCTTAAACAAAATTAG

Protein sequence

>MS.gene86109.t1

MGNLANRKPHAVLIPAPFQGHINPFFKLAKLLHLRGFYITFVNTEYNHKLLLKSRGPNALDGLTDFSFETIPDGLTPLESDGDVSQDVPSLCQSIRKNFLKPYCELLTRINHSTNVPPVTCLVSDPCMSFTIQAAEEFAVPNVLYFSSSACSLLIVMYLRSFVESGIIPFKDESYLTNGCLETKVDWIPDRVKRDSTILLNTFNELESDVINALSSMFPSLYAIGPLPSLLNQTPQIHQLDSLGSNLWKEDTECLEWLKSKEPRFVVYVNFGSITVMTPEQLLEFAWGLANCKKPFLWIIRPDLVIGGSLILYICNEWKIGMEIDTNVKRDELAKLINEVIAGDKGRKMRQKATELKKKAEEITRPGGCSYMNLDKVIMEMLLKQN