Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57219.t1 | XP_003589037.2 | 97 | 526 | 16 | 0 | 1 | 526 | 1 | 526 | 2.90E-281 | 977.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57219.t1 | G7IBA4 | 97.0 | 526 | 16 | 0 | 1 | 526 | 1 | 526 | 2.1e-281 | 977.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049243 | MS.gene57219 | 0.801646 | 8.16E-49 | -1.69E-46 |
| MS.gene049397 | MS.gene57219 | 0.806349 | 8.59E-50 | -1.69E-46 |
| MS.gene049596 | MS.gene57219 | 0.820529 | 6.54E-53 | -1.69E-46 |
| MS.gene049622 | MS.gene57219 | 0.805243 | 1.47E-49 | -1.69E-46 |
| MS.gene049989 | MS.gene57219 | 0.896353 | 4.00E-76 | -1.69E-46 |
| MS.gene050297 | MS.gene57219 | 0.882776 | 7.84E-71 | -1.69E-46 |
| MS.gene050648 | MS.gene57219 | 0.837283 | 5.69E-57 | -1.69E-46 |
| MS.gene05124 | MS.gene57219 | 0.822996 | 1.76E-53 | -1.69E-46 |
| MS.gene051263 | MS.gene57219 | 0.871411 | 6.97E-67 | -1.69E-46 |
| MS.gene051629 | MS.gene57219 | 0.980764 | 5.61E-151 | -1.69E-46 |
| MS.gene051742 | MS.gene57219 | 0.812825 | 3.49E-51 | -1.69E-46 |
| MS.gene051816 | MS.gene57219 | 0.847744 | 9.53E-60 | -1.69E-46 |
| MS.gene051955 | MS.gene57219 | 0.805008 | 1.64E-49 | -1.69E-46 |
| MS.gene052367 | MS.gene57219 | 0.882619 | 8.95E-71 | -1.69E-46 |
| MS.gene053173 | MS.gene57219 | 0.810529 | 1.10E-50 | -1.69E-46 |
| MS.gene053348 | MS.gene57219 | 0.816489 | 5.39E-52 | -1.69E-46 |
| MS.gene053416 | MS.gene57219 | 0.865448 | 5.86E-65 | -1.69E-46 |
| MS.gene053417 | MS.gene57219 | 0.869202 | 3.69E-66 | -1.69E-46 |
| MS.gene05369 | MS.gene57219 | 0.806456 | 8.15E-50 | -1.69E-46 |
| MS.gene053929 | MS.gene57219 | 0.80932 | 2.01E-50 | -1.69E-46 |
| MS.gene054551 | MS.gene57219 | 0.81063 | 1.05E-50 | -1.69E-46 |
| MS.gene054643 | MS.gene57219 | 0.832305 | 1.02E-55 | -1.69E-46 |
| MS.gene055781 | MS.gene57219 | 0.801684 | 8.02E-49 | -1.69E-46 |
| MS.gene055957 | MS.gene57219 | 0.849195 | 3.78E-60 | -1.69E-46 |
| MS.gene056041 | MS.gene57219 | 0.853241 | 2.72E-61 | -1.69E-46 |
| MS.gene056042 | MS.gene57219 | 0.816061 | 6.72E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene57219 | 0.818602 | 1.80E-52 | -1.69E-46 |
| MS.gene056526 | MS.gene57219 | 0.810915 | 9.09E-51 | -1.69E-46 |
| MS.gene057458 | MS.gene57219 | 0.828398 | 9.19E-55 | -1.69E-46 |
| MS.gene057771 | MS.gene57219 | 0.828858 | 7.12E-55 | -1.69E-46 |
| MS.gene058196 | MS.gene57219 | 0.835971 | 1.23E-56 | -1.69E-46 |
| MS.gene058197 | MS.gene57219 | 0.845441 | 4.05E-59 | -1.69E-46 |
| MS.gene058198 | MS.gene57219 | 0.848243 | 6.94E-60 | -1.69E-46 |
| MS.gene058827 | MS.gene57219 | 0.859388 | 4.28E-63 | -1.69E-46 |
| MS.gene058828 | MS.gene57219 | 0.816317 | 5.89E-52 | -1.69E-46 |
| MS.gene058844 | MS.gene57219 | 0.80431 | 2.30E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene57219 | 0.863787 | 1.94E-64 | -1.69E-46 |
| MS.gene059553 | MS.gene57219 | 0.824963 | 6.07E-54 | -1.69E-46 |
| MS.gene060473 | MS.gene57219 | 0.880841 | 3.94E-70 | -1.69E-46 |
| MS.gene060565 | MS.gene57219 | 0.875484 | 2.97E-68 | -1.69E-46 |
| MS.gene06057 | MS.gene57219 | 0.838209 | 3.29E-57 | -1.69E-46 |
| MS.gene06093 | MS.gene57219 | 0.822082 | 2.87E-53 | -1.69E-46 |
| MS.gene061099 | MS.gene57219 | 0.810943 | 8.96E-51 | -1.69E-46 |
| MS.gene061260 | MS.gene57219 | 0.865283 | 6.61E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57219.t1 | MTR_1g016740 | 97.148 | 526 | 15 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1062 |
| MS.gene57219.t1 | MTR_6g091790 | 31.961 | 413 | 255 | 7 | 1 | 405 | 1 | 395 | 4.46e-54 | 191 |
| MS.gene57219.t1 | MTR_6g091900 | 31.829 | 421 | 247 | 10 | 1 | 414 | 1 | 388 | 2.84e-51 | 181 |
| MS.gene57219.t1 | MTR_6g091790 | 31.807 | 393 | 242 | 7 | 1 | 385 | 1 | 375 | 8.43e-49 | 173 |
| MS.gene57219.t1 | MTR_6g092160 | 32.517 | 286 | 173 | 7 | 1 | 276 | 1 | 276 | 1.93e-26 | 109 |
| MS.gene57219.t1 | MTR_6g092160 | 32.753 | 287 | 173 | 7 | 1 | 277 | 1 | 277 | 2.78e-26 | 109 |
| MS.gene57219.t1 | MTR_6g092190 | 28.462 | 260 | 148 | 6 | 1 | 258 | 1 | 224 | 8.36e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57219.t1 | AT5G11780 | 34.308 | 513 | 279 | 16 | 13 | 515 | 16 | 480 | 9.02e-81 | 261 |
Find 137 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCGTTTGATGGGTTT+TGG | 0.172397 | 1.4:+5878880 | MS.gene57219:CDS |
| TGTGACGGTGGTGGTGAATC+TGG | 0.185538 | 1.4:+5879063 | MS.gene57219:CDS |
| TCCATGTATAGAACTTAAAA+AGG | 0.209498 | 1.4:-5882145 | None:intergenic |
| TCCATGTATAGAAGTTAAAA+AGG | 0.215610 | 1.4:-5882211 | None:intergenic |
| GAACACGGATTGGCAATATT+TGG | 0.248245 | 1.4:+5882042 | MS.gene57219:CDS |
| AACTTCACTGGTTGCGGTTA+AGG | 0.257652 | 1.4:+5878774 | MS.gene57219:CDS |
| TTCCCATTCAATTGATCAAC+TGG | 0.297157 | 1.4:+5881653 | MS.gene57219:CDS |
| GGGTTGTGAGGTTGGTTATT+TGG | 0.299959 | 1.4:+5879155 | MS.gene57219:CDS |
| AATTGATAGCGAAATCTTTC+AGG | 0.305089 | 1.4:-5881439 | None:intergenic |
| TGATGCTAGAGTTGGGGTTT+TGG | 0.312253 | 1.4:+5878999 | MS.gene57219:CDS |
| TGAGGTGAAATCGGTGAAAT+TGG | 0.317673 | 1.4:-5878647 | None:intergenic |
| GGTAGCACCGTTGCGGTATT+CGG | 0.322536 | 1.4:-5878626 | None:intergenic |
| TGTGAGGTTGGTTATTTGGC+TGG | 0.324431 | 1.4:+5879159 | MS.gene57219:CDS |
| TTCAGGTTATGACGGGGTTT+CGG | 0.342353 | 1.4:+5879280 | MS.gene57219:CDS |
| GTTGCATGCTGCAGCAGTTC+AGG | 0.345498 | 1.4:+5879263 | MS.gene57219:CDS |
| AAGAGTGAAGTTGAGGTTAA+TGG | 0.346324 | 1.4:+5878973 | MS.gene57219:CDS |
| GTTTGAGATTTATCGTTTGA+TGG | 0.347535 | 1.4:+5878873 | MS.gene57219:CDS |
| GCAATATTTGGTTGTGGAAC+TGG | 0.348987 | 1.4:+5882054 | MS.gene57219:CDS |
| ACTTCACTGGTTGCGGTTAA+GGG | 0.353217 | 1.4:+5878775 | MS.gene57219:CDS |
| GTGAGGTTGGTTATTTGGCT+GGG | 0.359801 | 1.4:+5879160 | MS.gene57219:CDS |
| CCCTTGAATTTCATACTAAT+AGG | 0.362321 | 1.4:+5878734 | MS.gene57219:CDS |
| GGTTCGGAAGGGGATTGAAA+TGG | 0.367232 | 1.4:+5879134 | MS.gene57219:CDS |
| TTTGCCAGTGATCTCCTTGC+TGG | 0.370811 | 1.4:+5880354 | MS.gene57219:CDS |
| GTTCGGAAGGGGATTGAAAT+GGG | 0.378899 | 1.4:+5879135 | MS.gene57219:CDS |
| TGAAAGATTTCGCTATCAAT+TGG | 0.402702 | 1.4:+5881441 | MS.gene57219:CDS |
| ATTGAAATGGGTTGTGAGGT+TGG | 0.406186 | 1.4:+5879147 | MS.gene57219:CDS |
| ACCTATTAGTATGAAATTCA+AGG | 0.406338 | 1.4:-5878735 | None:intergenic |
| TGAGTGATGGGGTTCGGAAG+GGG | 0.411569 | 1.4:+5879124 | MS.gene57219:CDS |
| GTGACGGTGGTGGTGAATCT+GGG | 0.413825 | 1.4:+5879064 | MS.gene57219:CDS |
| AAGGAGATCACTGGCAAAGC+TGG | 0.420916 | 1.4:-5880349 | None:intergenic |
| TTCTAGAACTTCACTGGTTG+CGG | 0.421114 | 1.4:+5878768 | MS.gene57219:CDS |
| TACAGGGAAAAGGGTGATCA+TGG | 0.421383 | 1.4:+5881589 | MS.gene57219:intron |
| AATGGTGGTGATGCTAGAGT+TGG | 0.423330 | 1.4:+5878991 | MS.gene57219:CDS |
| TAGAACCACAGAAGTGGAAT+TGG | 0.423743 | 1.4:-5878706 | None:intergenic |
| ATGGTGGTGATGCTAGAGTT+GGG | 0.425809 | 1.4:+5878992 | MS.gene57219:CDS |
| GGGGATCGCGAGAGGGGAGA+AGG | 0.432937 | 1.4:+5879233 | MS.gene57219:CDS |
| AGGAACTGTGCCTATGCTTC+CGG | 0.434210 | 1.4:+5882176 | MS.gene57219:CDS |
| AAATTGAGGGTTTGGTGGAA+GGG | 0.439420 | 1.4:+5878920 | MS.gene57219:CDS |
| GTTGGTGGTGATTGTTTGAA+AGG | 0.443415 | 1.4:+5879087 | MS.gene57219:CDS |
| CGAACCCCATCACTCACAAA+AGG | 0.448596 | 1.4:-5879117 | None:intergenic |
| TCTGCTTGGTTACAGGGAAA+AGG | 0.448658 | 1.4:+5881579 | MS.gene57219:intron |
| AATTGAGGGTTTGGTGGAAG+GGG | 0.450119 | 1.4:+5878921 | MS.gene57219:CDS |
| GTGAGTGATGGGGTTCGGAA+GGG | 0.455588 | 1.4:+5879123 | MS.gene57219:CDS |
| CTGCTTGGTTACAGGGAAAA+GGG | 0.455759 | 1.4:+5881580 | MS.gene57219:intron |
| TTTGAGATTTATCGTTTGAT+GGG | 0.457024 | 1.4:+5878874 | MS.gene57219:CDS |
| AACCCAGTTGATCAATTGAA+TGG | 0.459406 | 1.4:-5881656 | None:intergenic |
| TTGGTGGTGATTGTTTGAAA+GGG | 0.460482 | 1.4:+5879088 | MS.gene57219:CDS |
| GAAGAGTGAAATTGAGGGTT+TGG | 0.461305 | 1.4:+5878912 | MS.gene57219:CDS |
| TCATTCATTAATTGTCAAGC+TGG | 0.461966 | 1.4:+5881395 | MS.gene57219:CDS |
| GAAATTGAGGGTTTGGTGGA+AGG | 0.462960 | 1.4:+5878919 | MS.gene57219:CDS |
| AAGAACTGTGCCTATGCTTC+CGG | 0.464773 | 1.4:+5882110 | MS.gene57219:CDS |
| TGTGAGTGATGGGGTTCGGA+AGG | 0.467210 | 1.4:+5879122 | MS.gene57219:CDS |
| GCAGCAGTTCAGGTTATGAC+GGG | 0.467718 | 1.4:+5879273 | MS.gene57219:CDS |
| TGAGGTTGGTTATTTGGCTG+GGG | 0.467778 | 1.4:+5879161 | MS.gene57219:CDS |
| AACTCACTTATAAGATCAAT+AGG | 0.470267 | 1.4:-5881730 | None:intergenic |
| AGAAGTGAAGAGTGAAATTG+AGG | 0.470560 | 1.4:+5878906 | MS.gene57219:CDS |
| CTGCTTGTTTCGTGTTGCGA+TGG | 0.470961 | 1.4:+5878808 | MS.gene57219:CDS |
| GGAGAAGATTGAGGTGAAAT+CGG | 0.471563 | 1.4:-5878656 | None:intergenic |
| TGCGGTATTCGGTTAGGAAA+CGG | 0.474041 | 1.4:-5878615 | None:intergenic |
| AGCATTGGTTGGTAGTAAAG+TGG | 0.474818 | 1.4:-5878577 | None:intergenic |
| TTCTATACATGGAGGGTTCG+TGG | 0.487374 | 1.4:+5882221 | MS.gene57219:CDS |
| AGCTGCTGAGGAACACGGAT+TGG | 0.491886 | 1.4:+5882032 | MS.gene57219:CDS |
| CACCGTTGCGGTATTCGGTT+AGG | 0.495050 | 1.4:-5878621 | None:intergenic |
| GTACTATTCTGTGATGATGA+TGG | 0.496979 | 1.4:+5881367 | MS.gene57219:CDS |
| TCATCATCACAGAATAGTAC+AGG | 0.498391 | 1.4:-5881364 | None:intergenic |
| ACCCAGTTGATCAATTGAAT+GGG | 0.505767 | 1.4:-5881655 | None:intergenic |
| TTGATTGATTCTTTGAGCAT+TGG | 0.507350 | 1.4:-5878592 | None:intergenic |
| GTGGACGCCGTAAGTTTGTC+TGG | 0.507922 | 1.4:+5882285 | MS.gene57219:CDS |
| AGAAGCTTCTAGAACTTCAC+TGG | 0.511669 | 1.4:+5878762 | MS.gene57219:CDS |
| CTTATGTAAATTCCTTCTGT+AGG | 0.514311 | 1.4:+5881623 | MS.gene57219:CDS |
| TGGATGGTTGATTGTGACGG+TGG | 0.519274 | 1.4:+5879051 | MS.gene57219:CDS |
| GCATTGGTTGGTAGTAAAGT+GGG | 0.519982 | 1.4:-5878576 | None:intergenic |
| GCAACTAGAAAACGCAAAGA+AGG | 0.525322 | 1.4:+5882339 | MS.gene57219:CDS |
| GAAGTGAAGAGTGAAATTGA+GGG | 0.532302 | 1.4:+5878907 | MS.gene57219:CDS |
| GAGTGAAATTGAGGGTTTGG+TGG | 0.538067 | 1.4:+5878915 | MS.gene57219:CDS |
| TGGTGGTGATGCTAGAGTTG+GGG | 0.538164 | 1.4:+5878993 | MS.gene57219:CDS |
| GGATTGGCAATATTTGGTTG+TGG | 0.538609 | 1.4:+5882048 | MS.gene57219:CDS |
| TCACAATCAACCATCCAAAC+CGG | 0.540267 | 1.4:-5879045 | None:intergenic |
| ATGGTTGATTGTGACGGTGG+TGG | 0.541207 | 1.4:+5879054 | MS.gene57219:CDS |
| AGCGAAATCTTTCAGGCTGT+CGG | 0.543878 | 1.4:-5881432 | None:intergenic |
| TGAGGCGGGGATCGCGAGAG+GGG | 0.544183 | 1.4:+5879227 | MS.gene57219:CDS |
| TTGTATGAAGAGTGAAGTTG+AGG | 0.545439 | 1.4:+5878966 | MS.gene57219:CDS |
| GATCAATTGAATGGGAATGC+AGG | 0.547063 | 1.4:-5881647 | None:intergenic |
| TTGTTGATTTGATACCGGTT+TGG | 0.550293 | 1.4:+5879031 | MS.gene57219:CDS |
| GAACCCCATCACTCACAAAA+GGG | 0.551030 | 1.4:-5879116 | None:intergenic |
| CCTATTAGTATGAAATTCAA+GGG | 0.552310 | 1.4:-5878734 | None:intergenic |
| GGTGGTGGTGAATCTGGGGT+TGG | 0.555180 | 1.4:+5879069 | MS.gene57219:CDS |
| TTTGAGGCGGGGATCGCGAG+AGG | 0.561298 | 1.4:+5879225 | MS.gene57219:CDS |
| AACCACAGAAGTGGAATTGG+TGG | 0.561727 | 1.4:-5878703 | None:intergenic |
| GGTGGTGAATCTGGGGTTGG+TGG | 0.563041 | 1.4:+5879072 | MS.gene57219:CDS |
| ATCATCACCAGACAAACTTA+CGG | 0.564664 | 1.4:-5882292 | None:intergenic |
| TGCAGCAGTTCAGGTTATGA+CGG | 0.565355 | 1.4:+5879272 | MS.gene57219:CDS |
| TGATTTGATACCGGTTTGGA+TGG | 0.570864 | 1.4:+5879035 | MS.gene57219:CDS |
| TGTTCAACCACCGGAAGCAT+AGG | 0.572107 | 1.4:-5882186 | None:intergenic |
| ACCCACCAATTCCACTTCTG+TGG | 0.572448 | 1.4:+5878701 | MS.gene57219:CDS |
| TTGATTCTTTGAGCATTGGT+TGG | 0.573059 | 1.4:-5878588 | None:intergenic |
| CTTCTAGCTGCTGAGGAACA+CGG | 0.574329 | 1.4:+5882027 | MS.gene57219:CDS |
| AAAACGCAAAGAAGGAATTG+AGG | 0.576892 | 1.4:+5882347 | MS.gene57219:CDS |
| ATGGATGTGTCGCGATGAAG+AGG | 0.578592 | 1.4:+5878827 | MS.gene57219:CDS |
| AGCGGCATAGACAGAAAGAT+CGG | 0.579831 | 1.4:+5881688 | MS.gene57219:CDS |
| TGTTTGACCACCGGAAGCAT+AGG | 0.585831 | 1.4:-5882120 | None:intergenic |
| TGAAGTGGTGTGAATTGCGC+GGG | 0.586090 | 1.4:-5878677 | None:intergenic |
| TCCCATTCAATTGATCAACT+GGG | 0.586710 | 1.4:+5881654 | MS.gene57219:CDS |
| GGGGATTGAAATGGGTTGTG+AGG | 0.589661 | 1.4:+5879143 | MS.gene57219:CDS |
| ACAGGGAAAAGGGTGATCAT+GGG | 0.591860 | 1.4:+5881590 | MS.gene57219:intron |
| GTTTGGATGGTTGATTGTGA+CGG | 0.592189 | 1.4:+5879048 | MS.gene57219:CDS |
| TCACTGTTGCTTGAATGTAC+AGG | 0.592735 | 1.4:-5882436 | None:intergenic |
| CATTGGTTGGTAGTAAAGTG+GGG | 0.592808 | 1.4:-5878575 | None:intergenic |
| GCTGAATAGAACCACAGAAG+TGG | 0.594045 | 1.4:-5878712 | None:intergenic |
| TTGAGGCGGGGATCGCGAGA+GGG | 0.594625 | 1.4:+5879226 | MS.gene57219:CDS |
| AGTCAGCTATACAGTCTGCT+AGG | 0.596408 | 1.4:+5881477 | MS.gene57219:CDS |
| TGGAATTGGTGGGTCTGAAG+TGG | 0.597501 | 1.4:-5878692 | None:intergenic |
| TGAAATTGGTAGCACCGTTG+CGG | 0.601583 | 1.4:-5878633 | None:intergenic |
| AACTGGCAAGCATCGTGCAA+AGG | 0.604651 | 1.4:+5882071 | MS.gene57219:CDS |
| ATTGGTTGGTAGTAAAGTGG+GGG | 0.609441 | 1.4:-5878574 | None:intergenic |
| AGAATGGCTTCTAGCTGCTG+AGG | 0.613476 | 1.4:+5882020 | MS.gene57219:intron |
| CTGAAGTGGTGTGAATTGCG+CGG | 0.614652 | 1.4:-5878678 | None:intergenic |
| TCAATAGGAGTGGAAACACT+TGG | 0.615988 | 1.4:-5881715 | None:intergenic |
| CTTACCAGCAAGGAGATCAC+TGG | 0.624906 | 1.4:-5880358 | None:intergenic |
| AACTGTGCCTATGCTTCCGG+TGG | 0.625094 | 1.4:+5882113 | MS.gene57219:CDS |
| TGACGGTGGTGGTGAATCTG+GGG | 0.625322 | 1.4:+5879065 | MS.gene57219:CDS |
| GTACATTCAAGCAACAGTGA+TGG | 0.626221 | 1.4:+5882439 | MS.gene57219:CDS |
| AACTGTGCCTATGCTTCCGG+TGG | 0.628824 | 1.4:+5882179 | MS.gene57219:CDS |
| CATCATCACAGAATAGTACA+GGG | 0.630428 | 1.4:-5881363 | None:intergenic |
| ACTTATAAGATCAATAGGAG+TGG | 0.641994 | 1.4:-5881725 | None:intergenic |
| GGGAATGCAGGACCTACAGA+AGG | 0.642543 | 1.4:-5881635 | None:intergenic |
| CAGCAGTTCAGGTTATGACG+GGG | 0.647188 | 1.4:+5879274 | MS.gene57219:CDS |
| AATTGCGCGGGAGAAGATTG+AGG | 0.647307 | 1.4:-5878665 | None:intergenic |
| ACCACAGAAGTGGAATTGGT+GGG | 0.661008 | 1.4:-5878702 | None:intergenic |
| TATGATGGTACTTACCAGCA+AGG | 0.661766 | 1.4:-5880368 | None:intergenic |
| TTCCTAACCGAATACCGCAA+CGG | 0.665195 | 1.4:+5878619 | MS.gene57219:CDS |
| AACTGGGTTACTCGTCAAAG+CGG | 0.670412 | 1.4:+5881670 | MS.gene57219:CDS |
| CGATAAATCTCAAACACCAA+CGG | 0.671461 | 1.4:-5878865 | None:intergenic |
| TTGGTTGGTAGTAAAGTGGG+GGG | 0.687195 | 1.4:-5878573 | None:intergenic |
| AGTGAAGTTGAGGTTAATGG+TGG | 0.690712 | 1.4:+5878976 | MS.gene57219:CDS |
| TGTGTCGCGATGAAGAGGAT+CGG | 0.711856 | 1.4:+5878832 | MS.gene57219:CDS |
| TGTAGAGATGCATGATACTG+TGG | 0.718185 | 1.4:+5882266 | MS.gene57219:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAACTTATATGAGT+AGG | - | chr1.4:5880889-5880908 | None:intergenic | 15.0% |
| !! | AAAATAAACTTATATGAGTA+GGG | - | chr1.4:5880888-5880907 | None:intergenic | 15.0% |
| !! | GAAAGAATAATAAAAGAAAA+TGG | - | chr1.4:5881771-5881790 | None:intergenic | 15.0% |
| !! | TATACAAGTTATACAAATAA+AGG | - | chr1.4:5880204-5880223 | None:intergenic | 15.0% |
| !!! | TATAATCTTTTCTGTAAAAT+AGG | - | chr1.4:5880843-5880862 | None:intergenic | 15.0% |
| !!! | TATTTTACAGAAAAGATTAT+AGG | + | chr1.4:5880842-5880861 | MS.gene57219:intron | 15.0% |
| !! | AATAATAAAAGAAAATGGAG+GGG | - | chr1.4:5881766-5881785 | None:intergenic | 20.0% |
| !! | AGAATAATAAAAGAAAATGG+AGG | - | chr1.4:5881768-5881787 | None:intergenic | 20.0% |
| !! | ATAATGTTTGATAAATGAAC+TGG | - | chr1.4:5880767-5880786 | None:intergenic | 20.0% |
| !! | GAATAATAAAAGAAAATGGA+GGG | - | chr1.4:5881767-5881786 | None:intergenic | 20.0% |
| !! | TATAAAAAACAGAACAAAAC+AGG | - | chr1.4:5880710-5880729 | None:intergenic | 20.0% |
| !!! | AATTGAAATTTTTGTGATGT+TGG | + | chr1.4:5880984-5881003 | MS.gene57219:intron | 20.0% |
| !!! | GAAAACTATGATTTAGATTT+TGG | + | chr1.4:5881006-5881025 | MS.gene57219:intron | 20.0% |
| !!! | TATTTTTCATGCGATAATTT+AGG | + | chr1.4:5880902-5880921 | MS.gene57219:intron | 20.0% |
| !!! | TTTCGGAATTTTTACTTTTT+GGG | + | chr1.4:5879297-5879316 | MS.gene57219:CDS | 20.0% |
| !!! | TTTTTAAAAAAAGTTCAGCA+AGG | + | chr1.4:5881823-5881842 | MS.gene57219:intron | 20.0% |
| ! | AAACATTATCTTAGATTAGC+TGG | + | chr1.4:5880778-5880797 | MS.gene57219:intron | 25.0% |
| ! | AACTCACTTATAAGATCAAT+AGG | - | chr1.4:5881733-5881752 | None:intergenic | 25.0% |
| ! | AATTAAATTTCACCAAGATC+TGG | - | chr1.4:5880038-5880057 | None:intergenic | 25.0% |
| ! | ACACTGATATAACTTGAAAT+TGG | - | chr1.4:5881872-5881891 | None:intergenic | 25.0% |
| ! | ACCTATTAGTATGAAATTCA+AGG | - | chr1.4:5878738-5878757 | None:intergenic | 25.0% |
| ! | AGCATTACTTAGTTGTAATT+CGG | + | chr1.4:5880397-5880416 | MS.gene57219:intron | 25.0% |
| ! | CACTGATATAACTTGAAATT+GGG | - | chr1.4:5881871-5881890 | None:intergenic | 25.0% |
| ! | CCATGTATAGAACTTAAAAA+GGG | - | chr1.4:5882147-5882166 | None:intergenic | 25.0% |
| ! | CCATGTATAGAAGTTAAAAA+GGG | - | chr1.4:5882213-5882232 | None:intergenic | 25.0% |
| ! | CCTATTAGTATGAAATTCAA+GGG | - | chr1.4:5878737-5878756 | None:intergenic | 25.0% |
| ! | GAGTTTATATGTAAGTTGTT+TGG | - | chr1.4:5879853-5879872 | None:intergenic | 25.0% |
| ! | GATAATAAGCACTTATGTAT+AGG | - | chr1.4:5879777-5879796 | None:intergenic | 25.0% |
| ! | TAATCTTACACATAGTTTCA+TGG | - | chr1.4:5880466-5880485 | None:intergenic | 25.0% |
| ! | TAGTGATTTCTTATTCAGAA+TGG | + | chr1.4:5882004-5882023 | MS.gene57219:intron | 25.0% |
| ! | TAGTTGTAATTCGGAATTAA+GGG | + | chr1.4:5880406-5880425 | MS.gene57219:intron | 25.0% |
| ! | TCATTGCAACAAAATTGTTA+AGG | - | chr1.4:5879918-5879937 | None:intergenic | 25.0% |
| ! | TCCATGTATAGAACTTAAAA+AGG | - | chr1.4:5882148-5882167 | None:intergenic | 25.0% |
| ! | TCCATGTATAGAAGTTAAAA+AGG | - | chr1.4:5882214-5882233 | None:intergenic | 25.0% |
| ! | TGCCTCAATATAATTATGTT+CGG | + | chr1.4:5879962-5879981 | MS.gene57219:intron | 25.0% |
| ! | TGTCATATTCAACAATTTAC+TGG | + | chr1.4:5881295-5881314 | MS.gene57219:intron | 25.0% |
| ! | TTAGTTGTAATTCGGAATTA+AGG | + | chr1.4:5880405-5880424 | MS.gene57219:intron | 25.0% |
| ! | TTGATTCTGTTTATTGATGT+TGG | + | chr1.4:5880945-5880964 | MS.gene57219:intron | 25.0% |
| !! | ACTACAATTTAAAATCATGC+TGG | - | chr1.4:5879351-5879370 | None:intergenic | 25.0% |
| !! | CAGTATATTGTCTTTGAAAA+GGG | + | chr1.4:5881097-5881116 | MS.gene57219:intron | 25.0% |
| !! | CATAATTATATTGAGGCATT+TGG | - | chr1.4:5879960-5879979 | None:intergenic | 25.0% |
| !! | CTTTTCAAAGACAATATACT+GGG | - | chr1.4:5881098-5881117 | None:intergenic | 25.0% |
| !! | TCTTTTCTGTAAAATAGGTT+TGG | - | chr1.4:5880838-5880857 | None:intergenic | 25.0% |
| !! | TTTGAGATTTATCGTTTGAT+GGG | + | chr1.4:5878874-5878893 | MS.gene57219:CDS | 25.0% |
| !!! | AGGTTTTATAAAATGGATTG+CGG | - | chr1.4:5879496-5879515 | None:intergenic | 25.0% |
| !!! | GAAAATGTGTTTGATTTTTG+AGG | + | chr1.4:5879209-5879228 | MS.gene57219:CDS | 25.0% |
| !!! | GTCATCAAGGTTTTATAAAA+TGG | - | chr1.4:5879503-5879522 | None:intergenic | 25.0% |
| !!! | GTTTCGGAATTTTTACTTTT+TGG | + | chr1.4:5879296-5879315 | MS.gene57219:CDS | 25.0% |
| !!! | TTGTGTTTTAATACTCAAGT+TGG | + | chr1.4:5880076-5880095 | MS.gene57219:intron | 25.0% |
| !!! | TTTTAACTTCTATACATGGA+GGG | + | chr1.4:5882214-5882233 | MS.gene57219:CDS | 25.0% |
| !!! | TTTTAAGTTCTATACATGGA+GGG | + | chr1.4:5882148-5882167 | MS.gene57219:CDS | 25.0% |
| !!! | TTTTTAACTTCTATACATGG+AGG | + | chr1.4:5882213-5882232 | MS.gene57219:CDS | 25.0% |
| !!! | TTTTTAAGTTCTATACATGG+AGG | + | chr1.4:5882147-5882166 | MS.gene57219:CDS | 25.0% |
| AAAGAATGCATGACAACAAA+TGG | - | chr1.4:5879879-5879898 | None:intergenic | 30.0% | |
| AATAAGTCTGATAATCTGCT+TGG | + | chr1.4:5881565-5881584 | MS.gene57219:intron | 30.0% | |
| ACTTATAAGATCAATAGGAG+TGG | - | chr1.4:5881728-5881747 | None:intergenic | 30.0% | |
| AGTAATGCTAAAGCATATGA+TGG | - | chr1.4:5880386-5880405 | None:intergenic | 30.0% | |
| AGTCTAAATAGTTGTCATCA+AGG | - | chr1.4:5879516-5879535 | None:intergenic | 30.0% | |
| ATTATGTTCGGTCATTATGT+TGG | + | chr1.4:5879974-5879993 | MS.gene57219:intron | 30.0% | |
| CAGAATCAATATTTCAACTC+TGG | - | chr1.4:5880934-5880953 | None:intergenic | 30.0% | |
| CCCTTGAATTTCATACTAAT+AGG | + | chr1.4:5878734-5878753 | MS.gene57219:CDS | 30.0% | |
| CTTATGTAAATTCCTTCTGT+AGG | + | chr1.4:5881623-5881642 | MS.gene57219:CDS | 30.0% | |
| GAAAATTAAGCTGTTAACGT+AGG | + | chr1.4:5879822-5879841 | MS.gene57219:intron | 30.0% | |
| GAACAAAACAGGACTAAATA+AGG | - | chr1.4:5880699-5880718 | None:intergenic | 30.0% | |
| GACCGAACATAATTATATTG+AGG | - | chr1.4:5879967-5879986 | None:intergenic | 30.0% | |
| GTAGCTGTGAAATATGAATT+AGG | + | chr1.4:5881517-5881536 | MS.gene57219:intron | 30.0% | |
| GTGAAATATGAATTAGGAAG+TGG | + | chr1.4:5881523-5881542 | MS.gene57219:intron | 30.0% | |
| TATATTACTCAGTTTGACGT+AGG | + | chr1.4:5880220-5880239 | MS.gene57219:intron | 30.0% | |
| TCAAGTAACCTCTCTATAAA+GGG | - | chr1.4:5880575-5880594 | None:intergenic | 30.0% | |
| TCATATTTCACAGCTACAAT+AGG | - | chr1.4:5881514-5881533 | None:intergenic | 30.0% | |
| TCATTCATTAATTGTCAAGC+TGG | + | chr1.4:5881395-5881414 | MS.gene57219:CDS | 30.0% | |
| TGAAAGATTTCGCTATCAAT+TGG | + | chr1.4:5881441-5881460 | MS.gene57219:CDS | 30.0% | |
| TGACATAATCTTCTCAACAT+TGG | + | chr1.4:5881152-5881171 | MS.gene57219:intron | 30.0% | |
| TTCATGCGATAATTTAGGTA+AGG | + | chr1.4:5880907-5880926 | MS.gene57219:intron | 30.0% | |
| ! | AATTCGAGTTCTTTGGTTTA+TGG | + | chr1.4:5881206-5881225 | MS.gene57219:intron | 30.0% |
| ! | ATAAGATCCGACAGTATTTT+TGG | + | chr1.4:5880803-5880822 | MS.gene57219:intron | 30.0% |
| ! | ATGCATCATACTTTTCTTGA+AGG | - | chr1.4:5881250-5881269 | None:intergenic | 30.0% |
| ! | CCAGTATATTGTCTTTGAAA+AGG | + | chr1.4:5881096-5881115 | MS.gene57219:intron | 30.0% |
| ! | CCTTTTCAAAGACAATATAC+TGG | - | chr1.4:5881099-5881118 | None:intergenic | 30.0% |
| ! | GTTTGAGATTTATCGTTTGA+TGG | + | chr1.4:5878873-5878892 | MS.gene57219:CDS | 30.0% |
| ! | TGCATCATACTTTTCTTGAA+GGG | - | chr1.4:5881249-5881268 | None:intergenic | 30.0% |
| ! | TGTAGATTCTACAGCATTTT+AGG | + | chr1.4:5880009-5880028 | MS.gene57219:intron | 30.0% |
| ! | TTGATTGATTCTTTGAGCAT+TGG | - | chr1.4:5878595-5878614 | None:intergenic | 30.0% |
| !! | AATGTGTTTGATTTTTGAGG+CGG | + | chr1.4:5879212-5879231 | MS.gene57219:CDS | 30.0% |
| !! | AATTGATAGCGAAATCTTTC+AGG | - | chr1.4:5881442-5881461 | None:intergenic | 30.0% |
| !!! | ATTTATCGTTTGATGGGTTT+TGG | + | chr1.4:5878880-5878899 | MS.gene57219:CDS | 30.0% |
| !!! | CCCTTTTTAACTTCTATACA+TGG | + | chr1.4:5882210-5882229 | MS.gene57219:CDS | 30.0% |
| !!! | CCCTTTTTAAGTTCTATACA+TGG | + | chr1.4:5882144-5882163 | MS.gene57219:CDS | 30.0% |
| !!! | TTTATCGTTTGATGGGTTTT+GGG | + | chr1.4:5878881-5878900 | MS.gene57219:CDS | 30.0% |
| AAAACGCAAAGAAGGAATTG+AGG | + | chr1.4:5882347-5882366 | MS.gene57219:CDS | 35.0% | |
| AAAGAAAATGGAGGGGTAAT+TGG | - | chr1.4:5881759-5881778 | None:intergenic | 35.0% | |
| AACCCAGTTGATCAATTGAA+TGG | - | chr1.4:5881659-5881678 | None:intergenic | 35.0% | |
| AAGAGTGAAGTTGAGGTTAA+TGG | + | chr1.4:5878973-5878992 | MS.gene57219:CDS | 35.0% | |
| ACCCAGTTGATCAATTGAAT+GGG | - | chr1.4:5881658-5881677 | None:intergenic | 35.0% | |
| ACTTCTCTTTGACTGTTAAG+AGG | + | chr1.4:5881792-5881811 | MS.gene57219:intron | 35.0% | |
| AGAAGTGAAGAGTGAAATTG+AGG | + | chr1.4:5878906-5878925 | MS.gene57219:CDS | 35.0% | |
| AGCTAATGTAATCTCAACTG+CGG | + | chr1.4:5879409-5879428 | MS.gene57219:intron | 35.0% | |
| ATAAGGAAAAGTGGTAAGTG+TGG | - | chr1.4:5880682-5880701 | None:intergenic | 35.0% | |
| ATCATCACCAGACAAACTTA+CGG | - | chr1.4:5882295-5882314 | None:intergenic | 35.0% | |
| ATGAATTAGGAAGTGGTTTC+TGG | + | chr1.4:5881530-5881549 | MS.gene57219:intron | 35.0% | |
| CAAAGAACTCGAATTACCAA+CGG | - | chr1.4:5881201-5881220 | None:intergenic | 35.0% | |
| CAAGTAACCTCTCTATAAAG+GGG | - | chr1.4:5880574-5880593 | None:intergenic | 35.0% | |
| CAATTACTAAGTGTACAAGC+GGG | + | chr1.4:5879545-5879564 | MS.gene57219:intron | 35.0% | |
| CACATAGTTTCATGGAGAAA+AGG | - | chr1.4:5880458-5880477 | None:intergenic | 35.0% | |
| CAGCTTATGAAAATAGACTG+TGG | + | chr1.4:5879702-5879721 | MS.gene57219:intron | 35.0% | |
| CAGGACTAAATAAGGAAAAG+TGG | - | chr1.4:5880691-5880710 | None:intergenic | 35.0% | |
| CAGTGGCATCATAATATGAT+TGG | - | chr1.4:5880551-5880570 | None:intergenic | 35.0% | |
| CATCATCACAGAATAGTACA+GGG | - | chr1.4:5881366-5881385 | None:intergenic | 35.0% | |
| CGATAAATCTCAAACACCAA+CGG | - | chr1.4:5878868-5878887 | None:intergenic | 35.0% | |
| CTCAAGTAACCTCTCTATAA+AGG | - | chr1.4:5880576-5880595 | None:intergenic | 35.0% | |
| CTTGTACACTTAGTAATTGC+TGG | - | chr1.4:5879544-5879563 | None:intergenic | 35.0% | |
| GAAAAGATTATAGGTCACTC+AGG | + | chr1.4:5880851-5880870 | MS.gene57219:intron | 35.0% | |
| GAAGTGAAGAGTGAAATTGA+GGG | + | chr1.4:5878907-5878926 | MS.gene57219:CDS | 35.0% | |
| GCAAGGTGTATAATTGAATG+TGG | + | chr1.4:5881840-5881859 | MS.gene57219:intron | 35.0% | |
| GCAATTACTAAGTGTACAAG+CGG | + | chr1.4:5879544-5879563 | MS.gene57219:intron | 35.0% | |
| GGGAACTATACTTGAAGAAT+CGG | - | chr1.4:5881078-5881097 | None:intergenic | 35.0% | |
| GGTGAACTAAACAATTTCTC+TGG | - | chr1.4:5881057-5881076 | None:intergenic | 35.0% | |
| TAAGGAAAAGTGGTAAGTGT+GGG | - | chr1.4:5880681-5880700 | None:intergenic | 35.0% | |
| TCAAGTTATATCAGTGTCGT+TGG | + | chr1.4:5881875-5881894 | MS.gene57219:intron | 35.0% | |
| TCATCATCACAGAATAGTAC+AGG | - | chr1.4:5881367-5881386 | None:intergenic | 35.0% | |
| TCCCATTCAATTGATCAACT+GGG | + | chr1.4:5881654-5881673 | MS.gene57219:CDS | 35.0% | |
| TGATAATCTGCTTGGTTACA+GGG | + | chr1.4:5881573-5881592 | MS.gene57219:intron | 35.0% | |
| TTCCCATTCAATTGATCAAC+TGG | + | chr1.4:5881653-5881672 | MS.gene57219:CDS | 35.0% | |
| TTGTATGAAGAGTGAAGTTG+AGG | + | chr1.4:5878966-5878985 | MS.gene57219:CDS | 35.0% | |
| ! | GCTTATCAGATATGCTTTTG+AGG | + | chr1.4:5880314-5880333 | MS.gene57219:intron | 35.0% |
| ! | GTACTATTCTGTGATGATGA+TGG | + | chr1.4:5881367-5881386 | MS.gene57219:CDS | 35.0% |
| ! | TTTTCCCTTTTGTGAGTGAT+GGG | + | chr1.4:5879112-5879131 | MS.gene57219:CDS | 35.0% |
| ! | TTTTTCCCTTTTGTGAGTGA+TGG | + | chr1.4:5879111-5879130 | MS.gene57219:CDS | 35.0% |
| !! | TATGCTTTTGAGGATGATGT+TGG | + | chr1.4:5880324-5880343 | MS.gene57219:CDS | 35.0% |
| !! | TTACTGGTCGTTTTGCTATA+GGG | + | chr1.4:5881311-5881330 | MS.gene57219:intron | 35.0% |
| !! | TTGATTCTTTGAGCATTGGT+TGG | - | chr1.4:5878591-5878610 | None:intergenic | 35.0% |
| !! | TTGGTGGTGATTGTTTGAAA+GGG | + | chr1.4:5879088-5879107 | MS.gene57219:CDS | 35.0% |
| !! | TTGTTGATTTGATACCGGTT+TGG | + | chr1.4:5879031-5879050 | MS.gene57219:CDS | 35.0% |
| !! | TTTACTGGTCGTTTTGCTAT+AGG | + | chr1.4:5881310-5881329 | MS.gene57219:intron | 35.0% |
| !!! | ATCCGACAGTATTTTTGGTT+CGG | + | chr1.4:5880808-5880827 | MS.gene57219:intron | 35.0% |
| !!! | ATGTGTTTGATTTTTGAGGC+GGG | + | chr1.4:5879213-5879232 | MS.gene57219:CDS | 35.0% |
| !!! | GGGTTTTGTTGATTTGATAC+CGG | + | chr1.4:5879026-5879045 | MS.gene57219:CDS | 35.0% |
| !!! | TTATCGTTTGATGGGTTTTG+GGG | + | chr1.4:5878882-5878901 | MS.gene57219:CDS | 35.0% |
| AAAAAGGGATGTTCAACCAC+CGG | - | chr1.4:5882198-5882217 | None:intergenic | 40.0% | |
| AAAAAGGGATGTTTGACCAC+CGG | - | chr1.4:5882132-5882151 | None:intergenic | 40.0% | |
| AAGCACTTGTCAGACTGTTT+GGG | + | chr1.4:5879609-5879628 | MS.gene57219:intron | 40.0% | |
| AGATTGACCCATACAAAGAC+AGG | - | chr1.4:5880142-5880161 | None:intergenic | 40.0% | |
| AGTGAAGTTGAGGTTAATGG+TGG | + | chr1.4:5878976-5878995 | MS.gene57219:CDS | 40.0% | |
| AGTGTGGGATCCTATCTAAA+AGG | - | chr1.4:5880666-5880685 | None:intergenic | 40.0% | |
| AGTTGTCTCCTGTCTTTGTA+TGG | + | chr1.4:5880131-5880150 | MS.gene57219:intron | 40.0% | |
| AGTTTCATGGAGAAAAGGAG+AGG | - | chr1.4:5880453-5880472 | None:intergenic | 40.0% | |
| ATATGTCCTTGTGCTTTCTG+GGG | + | chr1.4:5880243-5880262 | MS.gene57219:intron | 40.0% | |
| CGAAAGAGACTACGCATAAT+TGG | - | chr1.4:5881931-5881950 | None:intergenic | 40.0% | |
| CTGATAATCTGCTTGGTTAC+AGG | + | chr1.4:5881572-5881591 | MS.gene57219:intron | 40.0% | |
| GAAGAGTGAAATTGAGGGTT+TGG | + | chr1.4:5878912-5878931 | MS.gene57219:CDS | 40.0% | |
| GATATGTCCTTGTGCTTTCT+GGG | + | chr1.4:5880242-5880261 | MS.gene57219:intron | 40.0% | |
| GATCAATTGAATGGGAATGC+AGG | - | chr1.4:5881650-5881669 | None:intergenic | 40.0% | |
| GCAACTAGAAAACGCAAAGA+AGG | + | chr1.4:5882339-5882358 | MS.gene57219:CDS | 40.0% | |
| GCAATATTTGGTTGTGGAAC+TGG | + | chr1.4:5882054-5882073 | MS.gene57219:CDS | 40.0% | |
| GGAGAAGATTGAGGTGAAAT+CGG | - | chr1.4:5878659-5878678 | None:intergenic | 40.0% | |
| GTGTGGGATCCTATCTAAAA+GGG | - | chr1.4:5880665-5880684 | None:intergenic | 40.0% | |
| GTTGTCTCCTGTCTTTGTAT+GGG | + | chr1.4:5880132-5880151 | MS.gene57219:intron | 40.0% | |
| GTTTGGATGGTTGATTGTGA+CGG | + | chr1.4:5879048-5879067 | MS.gene57219:CDS | 40.0% | |
| TAAGCACCAATAAAGCAGTC+AGG | - | chr1.4:5880299-5880318 | None:intergenic | 40.0% | |
| TAAGCACTTGTCAGACTGTT+TGG | + | chr1.4:5879608-5879627 | MS.gene57219:intron | 40.0% | |
| TAGAACCACAGAAGTGGAAT+TGG | - | chr1.4:5878709-5878728 | None:intergenic | 40.0% | |
| TATGATGGTACTTACCAGCA+AGG | - | chr1.4:5880371-5880390 | None:intergenic | 40.0% | |
| TCAATAGGAGTGGAAACACT+TGG | - | chr1.4:5881718-5881737 | None:intergenic | 40.0% | |
| TCACAATCAACCATCCAAAC+CGG | - | chr1.4:5879048-5879067 | None:intergenic | 40.0% | |
| TCAGTTAAACCTATGCCAAG+TGG | - | chr1.4:5880520-5880539 | None:intergenic | 40.0% | |
| TCGGTCATTATGTTGGAGTT+TGG | + | chr1.4:5879981-5880000 | MS.gene57219:intron | 40.0% | |
| TGACTTCCTGACTGCTTTAT+TGG | + | chr1.4:5880290-5880309 | MS.gene57219:intron | 40.0% | |
| TGAGGTGAAATCGGTGAAAT+TGG | - | chr1.4:5878650-5878669 | None:intergenic | 40.0% | |
| TGCCGAACCAAAAATACTGT+CGG | - | chr1.4:5880813-5880832 | None:intergenic | 40.0% | |
| TGGTGATTGGATTCTGACTA+TGG | + | chr1.4:5881895-5881914 | MS.gene57219:intron | 40.0% | |
| TGTAGAGATGCATGATACTG+TGG | + | chr1.4:5882266-5882285 | MS.gene57219:CDS | 40.0% | |
| ! | CTTTGAAAAGGGCTACTACT+TGG | + | chr1.4:5881108-5881127 | MS.gene57219:intron | 40.0% |
| ! | GGATTGGCAATATTTGGTTG+TGG | + | chr1.4:5882048-5882067 | MS.gene57219:CDS | 40.0% |
| ! | TCAACATTGGCTACAATGCT+GGG | + | chr1.4:5881165-5881184 | MS.gene57219:intron | 40.0% |
| ! | TCACTGTTGCTTGAATGTAC+AGG | - | chr1.4:5882439-5882458 | None:intergenic | 40.0% |
| ! | TCTATACATGGAGGGTTTTC+AGG | + | chr1.4:5882156-5882175 | MS.gene57219:CDS | 40.0% |
| ! | TGGGGTATTTAGGATCTGTT+TGG | + | chr1.4:5879568-5879587 | MS.gene57219:intron | 40.0% |
| ! | TTTCCCTTTTGTGAGTGATG+GGG | + | chr1.4:5879113-5879132 | MS.gene57219:CDS | 40.0% |
| !! | AAATTGAGGGTTTGGTGGAA+GGG | + | chr1.4:5878920-5878939 | MS.gene57219:CDS | 40.0% |
| !! | AGAAGCTTCTAGAACTTCAC+TGG | + | chr1.4:5878762-5878781 | MS.gene57219:CDS | 40.0% |
| !! | AGCATTGGTTGGTAGTAAAG+TGG | - | chr1.4:5878580-5878599 | None:intergenic | 40.0% |
| !! | ATATCAGTGTCGTTGGTGAT+TGG | + | chr1.4:5881882-5881901 | MS.gene57219:intron | 40.0% |
| !! | ATTGAAATGGGTTGTGAGGT+TGG | + | chr1.4:5879147-5879166 | MS.gene57219:CDS | 40.0% |
| !! | ATTGGTTGGTAGTAAAGTGG+GGG | - | chr1.4:5878577-5878596 | None:intergenic | 40.0% |
| !! | CATGAGTTTAGTTCTGTGCT+TGG | - | chr1.4:5880737-5880756 | None:intergenic | 40.0% |
| !! | CATTGGTTGGTAGTAAAGTG+GGG | - | chr1.4:5878578-5878597 | None:intergenic | 40.0% |
| !! | CATTTTAGGAAGCCAGATCT+TGG | + | chr1.4:5880023-5880042 | MS.gene57219:intron | 40.0% |
| !! | CGTTGGTAATTCGAGTTCTT+TGG | + | chr1.4:5881199-5881218 | MS.gene57219:intron | 40.0% |
| !! | GAACACGGATTGGCAATATT+TGG | + | chr1.4:5882042-5882061 | MS.gene57219:CDS | 40.0% |
| !! | GCATTGGTTGGTAGTAAAGT+GGG | - | chr1.4:5878579-5878598 | None:intergenic | 40.0% |
| !! | GTTGGTGGTGATTGTTTGAA+AGG | + | chr1.4:5879087-5879106 | MS.gene57219:CDS | 40.0% |
| !! | TGATTTGATACCGGTTTGGA+TGG | + | chr1.4:5879035-5879054 | MS.gene57219:CDS | 40.0% |
| !! | TTCTAGAACTTCACTGGTTG+CGG | + | chr1.4:5878768-5878787 | MS.gene57219:CDS | 40.0% |
| !!! | TGTGTTTGATTTTTGAGGCG+GGG | + | chr1.4:5879214-5879233 | MS.gene57219:CDS | 40.0% |
| AACCACAGAAGTGGAATTGG+TGG | - | chr1.4:5878706-5878725 | None:intergenic | 45.0% | |
| AACTGGGTTACTCGTCAAAG+CGG | + | chr1.4:5881670-5881689 | MS.gene57219:CDS | 45.0% | |
| AAGAACTGTGCCTATGCTTC+CGG | + | chr1.4:5882110-5882129 | MS.gene57219:CDS | 45.0% | |
| ACAGGGAAAAGGGTGATCAT+GGG | + | chr1.4:5881590-5881609 | MS.gene57219:intron | 45.0% | |
| ACCACAGAAGTGGAATTGGT+GGG | - | chr1.4:5878705-5878724 | None:intergenic | 45.0% | |
| AGCGAAATCTTTCAGGCTGT+CGG | - | chr1.4:5881435-5881454 | None:intergenic | 45.0% | |
| AGCGGCATAGACAGAAAGAT+CGG | + | chr1.4:5881688-5881707 | MS.gene57219:CDS | 45.0% | |
| AGTCAGCTATACAGTCTGCT+AGG | + | chr1.4:5881477-5881496 | MS.gene57219:CDS | 45.0% | |
| CCTATCTAAAAGGGTGGAAC+AGG | - | chr1.4:5880656-5880675 | None:intergenic | 45.0% | |
| CTCGAATTACCAACGGAAGA+AGG | - | chr1.4:5881194-5881213 | None:intergenic | 45.0% | |
| CTGCTTGGTTACAGGGAAAA+GGG | + | chr1.4:5881580-5881599 | MS.gene57219:intron | 45.0% | |
| GAAAATGGAGGGGTAATTGG+TGG | - | chr1.4:5881756-5881775 | None:intergenic | 45.0% | |
| GAACCCCATCACTCACAAAA+GGG | - | chr1.4:5879119-5879138 | None:intergenic | 45.0% | |
| GAGTGAAATTGAGGGTTTGG+TGG | + | chr1.4:5878915-5878934 | MS.gene57219:CDS | 45.0% | |
| GCTGAATAGAACCACAGAAG+TGG | - | chr1.4:5878715-5878734 | None:intergenic | 45.0% | |
| GGATATGTCCTTGTGCTTTC+TGG | + | chr1.4:5880241-5880260 | MS.gene57219:intron | 45.0% | |
| GTGGAACAGGAGAACAAAAC+AGG | - | chr1.4:5880643-5880662 | None:intergenic | 45.0% | |
| GTTCGGAAGGGGATTGAAAT+GGG | + | chr1.4:5879135-5879154 | MS.gene57219:CDS | 45.0% | |
| TACAGGGAAAAGGGTGATCA+TGG | + | chr1.4:5881589-5881608 | MS.gene57219:intron | 45.0% | |
| TACTAAGTGTACAAGCGGGT+GGG | + | chr1.4:5879549-5879568 | MS.gene57219:intron | 45.0% | |
| TCTGCTTGGTTACAGGGAAA+AGG | + | chr1.4:5881579-5881598 | MS.gene57219:intron | 45.0% | |
| TGCGGTATTCGGTTAGGAAA+CGG | - | chr1.4:5878618-5878637 | None:intergenic | 45.0% | |
| TGGGATCCTATCTAAAAGGG+TGG | - | chr1.4:5880662-5880681 | None:intergenic | 45.0% | |
| TTACTAAGTGTACAAGCGGG+TGG | + | chr1.4:5879548-5879567 | MS.gene57219:intron | 45.0% | |
| TTCCTAACCGAATACCGCAA+CGG | + | chr1.4:5878619-5878638 | MS.gene57219:CDS | 45.0% | |
| TTCTATACATGGAGGGTTCG+TGG | + | chr1.4:5882221-5882240 | MS.gene57219:CDS | 45.0% | |
| ! | AAATCACCCCAGAAAGCACA+AGG | - | chr1.4:5880252-5880271 | None:intergenic | 45.0% |
| ! | AACTTCACTGGTTGCGGTTA+AGG | + | chr1.4:5878774-5878793 | MS.gene57219:CDS | 45.0% |
| ! | AATGGTGGTGATGCTAGAGT+TGG | + | chr1.4:5878991-5879010 | MS.gene57219:CDS | 45.0% |
| ! | ACTTCACTGGTTGCGGTTAA+GGG | + | chr1.4:5878775-5878794 | MS.gene57219:CDS | 45.0% |
| ! | ATGGATTGCGGCTGCAATTT+AGG | - | chr1.4:5879484-5879503 | None:intergenic | 45.0% |
| ! | ATGGTGGTGATGCTAGAGTT+GGG | + | chr1.4:5878992-5879011 | MS.gene57219:CDS | 45.0% |
| ! | CCTGTTCCACCCTTTTAGAT+AGG | + | chr1.4:5880653-5880672 | MS.gene57219:intron | 45.0% |
| ! | CTCAACATTGGCTACAATGC+TGG | + | chr1.4:5881164-5881183 | MS.gene57219:intron | 45.0% |
| ! | GGGTTGTGAGGTTGGTTATT+TGG | + | chr1.4:5879155-5879174 | MS.gene57219:CDS | 45.0% |
| ! | GTGAGGTTGGTTATTTGGCT+GGG | + | chr1.4:5879160-5879179 | MS.gene57219:CDS | 45.0% |
| ! | TGAAATTGGTAGCACCGTTG+CGG | - | chr1.4:5878636-5878655 | None:intergenic | 45.0% |
| ! | TGAGGTTGGTTATTTGGCTG+GGG | + | chr1.4:5879161-5879180 | MS.gene57219:CDS | 45.0% |
| ! | TGATGCTAGAGTTGGGGTTT+TGG | + | chr1.4:5878999-5879018 | MS.gene57219:CDS | 45.0% |
| ! | TGCAGCAGTTCAGGTTATGA+CGG | + | chr1.4:5879272-5879291 | MS.gene57219:CDS | 45.0% |
| ! | TGTGAGGTTGGTTATTTGGC+TGG | + | chr1.4:5879159-5879178 | MS.gene57219:CDS | 45.0% |
| ! | TTCAGGTTATGACGGGGTTT+CGG | + | chr1.4:5879280-5879299 | MS.gene57219:CDS | 45.0% |
| !! | AATTGAGGGTTTGGTGGAAG+GGG | + | chr1.4:5878921-5878940 | MS.gene57219:CDS | 45.0% |
| !! | CTTTTGTGAGTGATGGGGTT+CGG | + | chr1.4:5879118-5879137 | MS.gene57219:CDS | 45.0% |
| !! | GAAATTGAGGGTTTGGTGGA+AGG | + | chr1.4:5878919-5878938 | MS.gene57219:CDS | 45.0% |
| !! | TTGGTTGGTAGTAAAGTGGG+GGG | - | chr1.4:5878576-5878595 | None:intergenic | 45.0% |
| !!! | AAAGTGGGGGGTGTTTTGAA+GGG | - | chr1.4:5878564-5878583 | None:intergenic | 45.0% |
| !!! | AGAGTTGGGGTTTTGGAAGA+GGG | + | chr1.4:5879006-5879025 | MS.gene57219:CDS | 45.0% |
| !!! | GCGTTTTCTAGTTGCATCAG+TGG | - | chr1.4:5882334-5882353 | None:intergenic | 45.0% |
| !!! | TAAAGTGGGGGGTGTTTTGA+AGG | - | chr1.4:5878565-5878584 | None:intergenic | 45.0% |
| !!! | TAGAGTTGGGGTTTTGGAAG+AGG | + | chr1.4:5879005-5879024 | MS.gene57219:CDS | 45.0% |
| AAGGAGATCACTGGCAAAGC+TGG | - | chr1.4:5880352-5880371 | None:intergenic | 50.0% | |
| AATTGCGCGGGAGAAGATTG+AGG | - | chr1.4:5878668-5878687 | None:intergenic | 50.0% | |
| ACCCACCAATTCCACTTCTG+TGG | + | chr1.4:5878701-5878720 | MS.gene57219:CDS | 50.0% | |
| ACCTCTCTATAAAGGGGCAG+TGG | - | chr1.4:5880568-5880587 | None:intergenic | 50.0% | |
| ACTAAGTGTACAAGCGGGTG+GGG | + | chr1.4:5879550-5879569 | MS.gene57219:intron | 50.0% | |
| AGACAGGAGACAACTCTACG+TGG | - | chr1.4:5880126-5880145 | None:intergenic | 50.0% | |
| AGCCATCTTACTCGTCCACT+TGG | + | chr1.4:5880502-5880521 | MS.gene57219:intron | 50.0% | |
| AGGAACTGTGCCTATGCTTC+CGG | + | chr1.4:5882176-5882195 | MS.gene57219:CDS | 50.0% | |
| AGGAGACAACTCTACGTGGA+TGG | - | chr1.4:5880122-5880141 | None:intergenic | 50.0% | |
| AGGTCACTCAGGAGAGATGA+GGG | + | chr1.4:5880862-5880881 | MS.gene57219:intron | 50.0% | |
| ATGGATGTGTCGCGATGAAG+AGG | + | chr1.4:5878827-5878846 | MS.gene57219:CDS | 50.0% | |
| ATGGTTGATTGTGACGGTGG+TGG | + | chr1.4:5879054-5879073 | MS.gene57219:CDS | 50.0% | |
| CGAACCCCATCACTCACAAA+AGG | - | chr1.4:5879120-5879139 | None:intergenic | 50.0% | |
| CTGAAGTGGTGTGAATTGCG+CGG | - | chr1.4:5878681-5878700 | None:intergenic | 50.0% | |
| CTGCTTGTTTCGTGTTGCGA+TGG | + | chr1.4:5878808-5878827 | MS.gene57219:CDS | 50.0% | |
| CTTACCAGCAAGGAGATCAC+TGG | - | chr1.4:5880361-5880380 | None:intergenic | 50.0% | |
| CTTACTCGTCCACTTGGCAT+AGG | + | chr1.4:5880508-5880527 | MS.gene57219:intron | 50.0% | |
| GGTTCGGAAGGGGATTGAAA+TGG | + | chr1.4:5879134-5879153 | MS.gene57219:CDS | 50.0% | |
| TAGGTCACTCAGGAGAGATG+AGG | + | chr1.4:5880861-5880880 | MS.gene57219:intron | 50.0% | |
| TGAAGTGGTGTGAATTGCGC+GGG | - | chr1.4:5878680-5878699 | None:intergenic | 50.0% | |
| TGCCAAGTGGACGAGTAAGA+TGG | - | chr1.4:5880507-5880526 | None:intergenic | 50.0% | |
| TGGATGGTTGATTGTGACGG+TGG | + | chr1.4:5879051-5879070 | MS.gene57219:CDS | 50.0% | |
| TGTGTCGCGATGAAGAGGAT+CGG | + | chr1.4:5878832-5878851 | MS.gene57219:CDS | 50.0% | |
| TTTGCCAGTGATCTCCTTGC+TGG | + | chr1.4:5880354-5880373 | MS.gene57219:CDS | 50.0% | |
| ! | AACTGGCAAGCATCGTGCAA+AGG | + | chr1.4:5882071-5882090 | MS.gene57219:CDS | 50.0% |
| ! | AGAATGGCTTCTAGCTGCTG+AGG | + | chr1.4:5882020-5882039 | MS.gene57219:intron | 50.0% |
| ! | CAGCAGTTCAGGTTATGACG+GGG | + | chr1.4:5879274-5879293 | MS.gene57219:CDS | 50.0% |
| ! | CTTCTAGCTGCTGAGGAACA+CGG | + | chr1.4:5882027-5882046 | MS.gene57219:CDS | 50.0% |
| ! | GCAGCAGTTCAGGTTATGAC+GGG | + | chr1.4:5879273-5879292 | MS.gene57219:CDS | 50.0% |
| ! | TACAAGCGGGTGGGGTATTT+AGG | + | chr1.4:5879558-5879577 | MS.gene57219:intron | 50.0% |
| ! | TGGAATTGGTGGGTCTGAAG+TGG | - | chr1.4:5878695-5878714 | None:intergenic | 50.0% |
| ! | TGGTGGTGATGCTAGAGTTG+GGG | + | chr1.4:5878993-5879012 | MS.gene57219:CDS | 50.0% |
| ! | TGTTCAACCACCGGAAGCAT+AGG | - | chr1.4:5882189-5882208 | None:intergenic | 50.0% |
| ! | TGTTTGACCACCGGAAGCAT+AGG | - | chr1.4:5882123-5882142 | None:intergenic | 50.0% |
| !! | GGGGATTGAAATGGGTTGTG+AGG | + | chr1.4:5879143-5879162 | MS.gene57219:CDS | 50.0% |
| AACTGTGCCTATGCTTCCGG+TGG | + | chr1.4:5882113-5882132 | MS.gene57219:CDS | 55.0% | |
| AGCTGCTGAGGAACACGGAT+TGG | + | chr1.4:5882032-5882051 | MS.gene57219:CDS | 55.0% | |
| CACCGTTGCGGTATTCGGTT+AGG | - | chr1.4:5878624-5878643 | None:intergenic | 55.0% | |
| GCCACTGCCCCTTTATAGAG+AGG | + | chr1.4:5880564-5880583 | MS.gene57219:intron | 55.0% | |
| GGGAATGCAGGACCTACAGA+AGG | - | chr1.4:5881638-5881657 | None:intergenic | 55.0% | |
| GGTAGCACCGTTGCGGTATT+CGG | - | chr1.4:5878629-5878648 | None:intergenic | 55.0% | |
| GTGGACGCCGTAAGTTTGTC+TGG | + | chr1.4:5882285-5882304 | MS.gene57219:CDS | 55.0% | |
| GTTGCATGCTGCAGCAGTTC+AGG | + | chr1.4:5879263-5879282 | MS.gene57219:CDS | 55.0% | |
| ! | GTGACGGTGGTGGTGAATCT+GGG | + | chr1.4:5879064-5879083 | MS.gene57219:CDS | 55.0% |
| ! | GTGAGTGATGGGGTTCGGAA+GGG | + | chr1.4:5879123-5879142 | MS.gene57219:CDS | 55.0% |
| ! | TGACGGTGGTGGTGAATCTG+GGG | + | chr1.4:5879065-5879084 | MS.gene57219:CDS | 55.0% |
| ! | TGAGTGATGGGGTTCGGAAG+GGG | + | chr1.4:5879124-5879143 | MS.gene57219:CDS | 55.0% |
| ! | TGTGACGGTGGTGGTGAATC+TGG | + | chr1.4:5879063-5879082 | MS.gene57219:CDS | 55.0% |
| ! | TGTGAGTGATGGGGTTCGGA+AGG | + | chr1.4:5879122-5879141 | MS.gene57219:CDS | 55.0% |
| !!! | GATCGGTGTTTTAGCGCCGT+TGG | + | chr1.4:5878849-5878868 | MS.gene57219:CDS | 55.0% |
| ! | GGTGGTGAATCTGGGGTTGG+TGG | + | chr1.4:5879072-5879091 | MS.gene57219:CDS | 60.0% |
| ! | GGTGGTGGTGAATCTGGGGT+TGG | + | chr1.4:5879069-5879088 | MS.gene57219:CDS | 60.0% |
| GCTGGGCAGCCTTCTTCCGT+TGG | + | chr1.4:5881182-5881201 | MS.gene57219:intron | 65.0% | |
| TTGAGGCGGGGATCGCGAGA+GGG | + | chr1.4:5879226-5879245 | MS.gene57219:CDS | 65.0% | |
| ! | TTTGAGGCGGGGATCGCGAG+AGG | + | chr1.4:5879225-5879244 | MS.gene57219:CDS | 65.0% |
| GGGGATCGCGAGAGGGGAGA+AGG | + | chr1.4:5879233-5879252 | MS.gene57219:CDS | 70.0% | |
| TGAGGCGGGGATCGCGAGAG+GGG | + | chr1.4:5879227-5879246 | MS.gene57219:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 5878547 | 5882458 | 5878547 | ID=MS.gene57219 |
| chr1.4 | mRNA | 5878547 | 5882458 | 5878547 | ID=MS.gene57219.t1;Parent=MS.gene57219 |
| chr1.4 | exon | 5878547 | 5879318 | 5878547 | ID=MS.gene57219.t1.exon1;Parent=MS.gene57219.t1 |
| chr1.4 | CDS | 5878547 | 5879318 | 5878547 | ID=cds.MS.gene57219.t1;Parent=MS.gene57219.t1 |
| chr1.4 | exon | 5880323 | 5880375 | 5880323 | ID=MS.gene57219.t1.exon2;Parent=MS.gene57219.t1 |
| chr1.4 | CDS | 5880323 | 5880375 | 5880323 | ID=cds.MS.gene57219.t1;Parent=MS.gene57219.t1 |
| chr1.4 | exon | 5881332 | 5881498 | 5881332 | ID=MS.gene57219.t1.exon3;Parent=MS.gene57219.t1 |
| chr1.4 | CDS | 5881332 | 5881498 | 5881332 | ID=cds.MS.gene57219.t1;Parent=MS.gene57219.t1 |
| chr1.4 | exon | 5881594 | 5881745 | 5881594 | ID=MS.gene57219.t1.exon4;Parent=MS.gene57219.t1 |
| chr1.4 | CDS | 5881594 | 5881745 | 5881594 | ID=cds.MS.gene57219.t1;Parent=MS.gene57219.t1 |
| chr1.4 | exon | 5882022 | 5882458 | 5882022 | ID=MS.gene57219.t1.exon5;Parent=MS.gene57219.t1 |
| chr1.4 | CDS | 5882022 | 5882458 | 5882022 | ID=cds.MS.gene57219.t1;Parent=MS.gene57219.t1 |
| Gene Sequence |
| Protein sequence |
