Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58616.t1 | NP_001351771.1 | 100 | 166 | 0 | 0 | 1 | 166 | 6 | 171 | 5.90E-87 | 330.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58616.t1 | P28188 | 92.2 | 166 | 13 | 0 | 1 | 166 | 6 | 171 | 8.9e-84 | 310.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58616.t1 | A0A072TWJ2 | 100.0 | 166 | 0 | 0 | 1 | 166 | 6 | 171 | 4.3e-87 | 330.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene58616 | 0.850087 | 2.13E-60 | -1.69E-46 |
| MS.gene04917 | MS.gene58616 | 0.844842 | 5.89E-59 | -1.69E-46 |
| MS.gene049822 | MS.gene58616 | 0.807017 | 6.21E-50 | -1.69E-46 |
| MS.gene049861 | MS.gene58616 | 0.817472 | 3.24E-52 | -1.69E-46 |
| MS.gene04991 | MS.gene58616 | -0.816578 | 5.15E-52 | -1.69E-46 |
| MS.gene050114 | MS.gene58616 | 0.816976 | 4.19E-52 | -1.69E-46 |
| MS.gene050288 | MS.gene58616 | 0.813551 | 2.42E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene58616 | 0.802295 | 6.01E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene58616 | 0.816383 | 5.69E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene58616 | 0.809549 | 1.79E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene58616 | 0.824181 | 9.28E-54 | -1.69E-46 |
| MS.gene051184 | MS.gene58616 | 0.856976 | 2.23E-62 | -1.69E-46 |
| MS.gene051831 | MS.gene58616 | 0.816413 | 5.60E-52 | -1.69E-46 |
| MS.gene051987 | MS.gene58616 | 0.84327 | 1.55E-58 | -1.69E-46 |
| MS.gene052242 | MS.gene58616 | -0.819546 | 1.10E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene58616 | 0.800423 | 1.45E-48 | -1.69E-46 |
| MS.gene052580 | MS.gene58616 | 0.814472 | 1.51E-51 | -1.69E-46 |
| MS.gene05344 | MS.gene58616 | -0.814467 | 1.52E-51 | -1.69E-46 |
| MS.gene056097 | MS.gene58616 | 0.813278 | 2.78E-51 | -1.69E-46 |
| MS.gene056752 | MS.gene58616 | 0.812821 | 3.50E-51 | -1.69E-46 |
| MS.gene056787 | MS.gene58616 | 0.827131 | 1.85E-54 | -1.69E-46 |
| MS.gene056849 | MS.gene58616 | 0.879236 | 1.47E-69 | -1.69E-46 |
| MS.gene056975 | MS.gene58616 | 0.832083 | 1.16E-55 | -1.69E-46 |
| MS.gene056992 | MS.gene58616 | 0.811934 | 5.46E-51 | -1.69E-46 |
| MS.gene057451 | MS.gene58616 | -0.824939 | 6.15E-54 | -1.69E-46 |
| MS.gene057452 | MS.gene58616 | -0.856422 | 3.25E-62 | -1.69E-46 |
| MS.gene057999 | MS.gene58616 | 0.836117 | 1.13E-56 | -1.69E-46 |
| MS.gene058238 | MS.gene58616 | 0.806879 | 6.64E-50 | -1.69E-46 |
| MS.gene058278 | MS.gene58616 | 0.806717 | 7.18E-50 | -1.69E-46 |
| MS.gene058758 | MS.gene58616 | 0.816872 | 4.42E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene58616 | 0.804838 | 1.78E-49 | -1.69E-46 |
| MS.gene059719 | MS.gene58616 | 0.810968 | 8.85E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene58616 | -0.832126 | 1.13E-55 | -1.69E-46 |
| MS.gene060084 | MS.gene58616 | 0.809153 | 2.18E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene58616 | 0.820496 | 6.65E-53 | -1.69E-46 |
| MS.gene060563 | MS.gene58616 | 0.803882 | 2.82E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene58616 | 0.821778 | 3.37E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCAAGCTCCTTCTTAT+TGG | 0.139580 | 8.4:-79828305 | MS.gene58616:CDS |
| TTTGCACTTGTTTCCATAAA+AGG | 0.153571 | 8.4:+79826585 | None:intergenic |
| CTGCCGGGCAAGAACGATTT+AGG | 0.303257 | 8.4:-79827056 | MS.gene58616:CDS |
| TGATAATGTTAACAAGCTTT+TGG | 0.346717 | 8.4:-79826825 | MS.gene58616:CDS |
| CTCCTTCTTATTGGAGACTC+TGG | 0.406221 | 8.4:-79828296 | MS.gene58616:CDS |
| AAATGTGGAAGGAGCATTCA+TGG | 0.416001 | 8.4:-79826553 | MS.gene58616:CDS |
| CTTATTGGAGACTCTGGTGT+TGG | 0.464289 | 8.4:-79828290 | MS.gene58616:CDS |
| TAATGAGCACCTATCCTTGA+TGG | 0.471028 | 8.4:+79826518 | None:intergenic |
| TTCTTGTAGTGGGACACTGC+CGG | 0.479251 | 8.4:-79827072 | MS.gene58616:intron |
| AGCTACTATCGTGGGGCACA+TGG | 0.488301 | 8.4:-79827021 | MS.gene58616:CDS |
| ATCCTTGATGGCAGCAGCCA+TGG | 0.490402 | 8.4:+79826530 | None:intergenic |
| CAGGAATTTGCAGATCAAAT+CGG | 0.492691 | 8.4:-79826612 | MS.gene58616:CDS |
| TTCGAACTGTTGAGCAGGAT+GGG | 0.495201 | 8.4:-79827210 | MS.gene58616:CDS |
| AAGCTTGTTAACATTATCAC+TGG | 0.500079 | 8.4:+79826829 | None:intergenic |
| GGCCATGGCTGCTGCCATCA+AGG | 0.509743 | 8.4:-79826532 | MS.gene58616:CDS |
| TCTTGTAGTGGGACACTGCC+GGG | 0.511489 | 8.4:-79827071 | MS.gene58616:intron |
| TTACAGCAAATCTTAGAAGA+AGG | 0.520470 | 8.4:+79828258 | None:intergenic |
| ATTCGAACTGTTGAGCAGGA+TGG | 0.524930 | 8.4:-79827211 | MS.gene58616:CDS |
| GAAAATTCGAACTGTTGAGC+AGG | 0.528077 | 8.4:-79827215 | MS.gene58616:CDS |
| ATTATTGAAGCTCTCTTCAT+CGG | 0.536063 | 8.4:+79826886 | None:intergenic |
| GATAGCTACATAAGCACCAT+TGG | 0.541145 | 8.4:-79827338 | MS.gene58616:CDS |
| CACCAGAGTCTCCAATAAGA+AGG | 0.544091 | 8.4:+79828294 | None:intergenic |
| TGGCTGCTGCCATCAAGGAT+AGG | 0.548752 | 8.4:-79826527 | None:intergenic |
| TGTCCTAAATCGTTCTTGCC+CGG | 0.552890 | 8.4:+79827053 | None:intergenic |
| TAACCAGTAGCTACTATCGT+GGG | 0.574293 | 8.4:-79827029 | MS.gene58616:CDS |
| TGCCCCACGATAGTAGCTAC+TGG | 0.575290 | 8.4:+79827026 | None:intergenic |
| TGCAAAGGATGCTACAAATG+TGG | 0.595953 | 8.4:-79826568 | MS.gene58616:CDS |
| AAGGATGCTACAAATGTGGA+AGG | 0.613051 | 8.4:-79826564 | MS.gene58616:CDS |
| ACTCACAAAATCAACTCCAA+TGG | 0.624945 | 8.4:+79827322 | None:intergenic |
| GGAAGGAGCATTCATGGCCA+TGG | 0.628916 | 8.4:-79826547 | MS.gene58616:CDS |
| ATAACCAGTAGCTACTATCG+TGG | 0.642124 | 8.4:-79827030 | MS.gene58616:CDS |
| GCTTCAATAATGTGAAGCAG+TGG | 0.652698 | 8.4:-79826874 | MS.gene58616:CDS |
| AACCAGTAGCTACTATCGTG+GGG | 0.702592 | 8.4:-79827028 | MS.gene58616:CDS |
| TAACATTATCACTGGCATAG+CGG | 0.705715 | 8.4:+79826837 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATACTGCAATAT+AGG | + | chr8.4:79826629-79826648 | None:intergenic | 15.0% |
| !! | AAATAAATAACCAGTATAAA+AGG | + | chr8.4:79826713-79826732 | None:intergenic | 15.0% |
| !! | AAAACATAGTAGTGTATATT+AGG | + | chr8.4:79827742-79827761 | None:intergenic | 20.0% |
| !! | AATAATCAAATCTATAATGG+AGG | - | chr8.4:79826941-79826960 | MS.gene58616:intron | 20.0% |
| !! | CAGAATAATCAAATCTATAA+TGG | - | chr8.4:79826938-79826957 | MS.gene58616:intron | 20.0% |
| !! | GTTGAATTAAATCTATGAAT+GGG | - | chr8.4:79827090-79827109 | MS.gene58616:intron | 20.0% |
| !! | TTAACTTTATGATATACTAC+AGG | - | chr8.4:79827465-79827484 | MS.gene58616:intron | 20.0% |
| !!! | AACTATCAAATCTATTTTGT+AGG | - | chr8.4:79826965-79826984 | MS.gene58616:intron | 20.0% |
| !!! | ATAATCAAATCTATAATGGA+GGG | - | chr8.4:79826942-79826961 | MS.gene58616:intron | 20.0% |
| ! | AAATAACCAGTATAAAAGGA+TGG | + | chr8.4:79826709-79826728 | None:intergenic | 25.0% |
| ! | ACATAACAACAAAATCAATG+GGG | + | chr8.4:79826764-79826783 | None:intergenic | 25.0% |
| ! | AGACATAACAACAAAATCAA+TGG | + | chr8.4:79826766-79826785 | None:intergenic | 25.0% |
| ! | AGATTGTATGTATCTTAGAT+TGG | - | chr8.4:79827669-79827688 | MS.gene58616:intron | 25.0% |
| ! | ATGATATTATAAGTTCAGAC+TGG | + | chr8.4:79827592-79827611 | None:intergenic | 25.0% |
| ! | CACAATAAAGAGTTTAAACA+TGG | - | chr8.4:79827866-79827885 | MS.gene58616:intron | 25.0% |
| ! | CATGTTTAAACTCTTTATTG+TGG | + | chr8.4:79827868-79827887 | None:intergenic | 25.0% |
| ! | GACATAACAACAAAATCAAT+GGG | + | chr8.4:79826765-79826784 | None:intergenic | 25.0% |
| ! | GGTTGAATTAAATCTATGAA+TGG | - | chr8.4:79827089-79827108 | MS.gene58616:intron | 25.0% |
| ! | TAACATTGAATGAGTGTAAT+GGG | - | chr8.4:79826793-79826812 | MS.gene58616:CDS | 25.0% |
| ! | TTAACATTGAATGAGTGTAA+TGG | - | chr8.4:79826792-79826811 | MS.gene58616:CDS | 25.0% |
| ! | TTTGCTAAATCATAAACTCA+AGG | + | chr8.4:79827313-79827332 | None:intergenic | 25.0% |
| !! | AAATCTATGAATGGGATTTT+TGG | - | chr8.4:79827098-79827117 | MS.gene58616:intron | 25.0% |
| !!! | TGATAATGTTAACAAGCTTT+TGG | - | chr8.4:79828015-79828034 | MS.gene58616:intron | 25.0% |
| AACATTGAATGAGTGTAATG+GGG | - | chr8.4:79826794-79826813 | MS.gene58616:CDS | 30.0% | |
| AATAGAATCTACAGGTTGTA+AGG | - | chr8.4:79827006-79827025 | MS.gene58616:intron | 30.0% | |
| ATAGATCTTGAGGAAATATC+AGG | - | chr8.4:79827247-79827266 | MS.gene58616:intron | 30.0% | |
| ATTATTGAAGCTCTCTTCAT+CGG | + | chr8.4:79827957-79827976 | None:intergenic | 30.0% | |
| CAAGACATAGAAGATGATAA+TGG | + | chr8.4:79827187-79827206 | None:intergenic | 30.0% | |
| GTTAAATGTGAACGAAGAAA+AGG | - | chr8.4:79826853-79826872 | MS.gene58616:CDS | 30.0% | |
| TAGAGAATGAAAAACACAAC+CGG | + | chr8.4:79827898-79827917 | None:intergenic | 30.0% | |
| TATAAAAGGATGGAGAAACA+TGG | + | chr8.4:79826699-79826718 | None:intergenic | 30.0% | |
| TGATATTTCCTCAAGATCTA+TGG | + | chr8.4:79827248-79827267 | None:intergenic | 30.0% | |
| TTACAGCAAATCTTAGAAGA+AGG | + | chr8.4:79826585-79826604 | None:intergenic | 30.0% | |
| TTTAGCAAAATCGTCTTATC+TGG | - | chr8.4:79827324-79827343 | MS.gene58616:intron | 30.0% | |
| TTTGCACTTGTTTCCATAAA+AGG | + | chr8.4:79828258-79828277 | None:intergenic | 30.0% | |
| ! | AATGTTAACAAGCTTTTGGT+TGG | - | chr8.4:79828019-79828038 | MS.gene58616:intron | 30.0% |
| ! | TATTTTGTGCTGTGTATTTC+TGG | - | chr8.4:79827370-79827389 | MS.gene58616:intron | 30.0% |
| ! | TGATTTTGCTTGAACTCATT+TGG | - | chr8.4:79827556-79827575 | MS.gene58616:intron | 30.0% |
| ! | TTTTATGGAAACAAGTGCAA+AGG | - | chr8.4:79828257-79828276 | MS.gene58616:intron | 30.0% |
| ! | TTTTGATCTGTTCTTGTAGT+GGG | - | chr8.4:79827758-79827777 | MS.gene58616:intron | 30.0% |
| !! | AAGCTTGTTAACATTATCAC+TGG | + | chr8.4:79828014-79828033 | None:intergenic | 30.0% |
| AAGGTAGGAATAGAATCTAC+AGG | - | chr8.4:79826912-79826931 | MS.gene58616:intron | 35.0% | |
| ACTCACAAAATCAACTCCAA+TGG | + | chr8.4:79827521-79827540 | None:intergenic | 35.0% | |
| AGTTTAAACATGGAACACTC+CGG | - | chr8.4:79827876-79827895 | MS.gene58616:intron | 35.0% | |
| CAGGAATTTGCAGATCAAAT+CGG | - | chr8.4:79828228-79828247 | MS.gene58616:intron | 35.0% | |
| CATCATAAACAATCTGCCAA+AGG | + | chr8.4:79827931-79827950 | None:intergenic | 35.0% | |
| TAACATTATCACTGGCATAG+CGG | + | chr8.4:79828006-79828025 | None:intergenic | 35.0% | |
| TAGTTTCTCCATAGATCTTG+AGG | - | chr8.4:79827237-79827256 | MS.gene58616:intron | 35.0% | |
| TCTCTAATAACGTGTTCCTT+TGG | - | chr8.4:79827912-79827931 | MS.gene58616:intron | 35.0% | |
| TGTATTGTGCAGCAGTATTA+TGG | + | chr8.4:79827432-79827451 | None:intergenic | 35.0% | |
| ! | AGAGAGAAAAAAAGAGTGTG+AGG | + | chr8.4:79828204-79828223 | None:intergenic | 35.0% |
| ! | GTTTCTCCATCCTTTTATAC+TGG | - | chr8.4:79826700-79826719 | MS.gene58616:intron | 35.0% |
| ! | TCAAATCGGCATACCTTTTA+TGG | - | chr8.4:79828242-79828261 | MS.gene58616:intron | 35.0% |
| !! | GTTTTGATCTGTTCTTGTAG+TGG | - | chr8.4:79827757-79827776 | MS.gene58616:intron | 35.0% |
| !! | TCTATGAATGGGATTTTTGG+AGG | - | chr8.4:79827101-79827120 | MS.gene58616:intron | 35.0% |
| !! | TTTTGTAGGAGAAGTGTGTA+AGG | - | chr8.4:79826893-79826912 | MS.gene58616:CDS | 35.0% |
| !!! | TCTTTTTTTCTCTCTATCGC+AGG | - | chr8.4:79828209-79828228 | MS.gene58616:intron | 35.0% |
| AACGAAGAAAAGGACATGAC+GGG | - | chr8.4:79826863-79826882 | MS.gene58616:CDS | 40.0% | |
| AAGGATGCTACAAATGTGGA+AGG | - | chr8.4:79828276-79828295 | MS.gene58616:CDS | 40.0% | |
| ATAACCAGTAGCTACTATCG+TGG | - | chr8.4:79827810-79827829 | MS.gene58616:intron | 40.0% | |
| CTGTTCAAGCTCCTTCTTAT+TGG | - | chr8.4:79826535-79826554 | MS.gene58616:CDS | 40.0% | |
| GAAAATTCGAACTGTTGAGC+AGG | - | chr8.4:79827625-79827644 | MS.gene58616:intron | 40.0% | |
| GAACGAAGAAAAGGACATGA+CGG | - | chr8.4:79826862-79826881 | MS.gene58616:CDS | 40.0% | |
| GAATCTACAGGTTGTAAGGT+AGG | - | chr8.4:79827010-79827029 | MS.gene58616:intron | 40.0% | |
| GATAGCTACATAAGCACCAT+TGG | - | chr8.4:79827502-79827521 | MS.gene58616:intron | 40.0% | |
| GCTTCAATAATGTGAAGCAG+TGG | - | chr8.4:79827966-79827985 | MS.gene58616:intron | 40.0% | |
| GTCTGTGTTCGTGTTTACTT+CGG | - | chr8.4:79828150-79828169 | MS.gene58616:intron | 40.0% | |
| GTTCACATTTAACCGCACAT+TGG | + | chr8.4:79826846-79826865 | None:intergenic | 40.0% | |
| TAACCAGTAGCTACTATCGT+GGG | - | chr8.4:79827811-79827830 | MS.gene58616:intron | 40.0% | |
| TGCAAAGGATGCTACAAATG+TGG | - | chr8.4:79828272-79828291 | MS.gene58616:CDS | 40.0% | |
| ! | AAAAAGAGTGTGAGGTGTTC+TGG | + | chr8.4:79828196-79828215 | None:intergenic | 40.0% |
| ! | GCAGTATTATGGAAGCGTAA+AGG | + | chr8.4:79827421-79827440 | None:intergenic | 40.0% |
| ! | GGCACTGAAGAACAAAGTTA+GGG | + | chr8.4:79827292-79827311 | None:intergenic | 40.0% |
| ! | TGACGGGACAGAAATTTTGT+AGG | - | chr8.4:79826879-79826898 | MS.gene58616:CDS | 40.0% |
| ! | TGTAATGGGGTTCTTGCTAT+TGG | - | chr8.4:79826807-79826826 | MS.gene58616:CDS | 40.0% |
| !! | AAATGTGGAAGGAGCATTCA+TGG | - | chr8.4:79828287-79828306 | MS.gene58616:CDS | 40.0% |
| !! | AATGGGATTTTTGGAGGCTT+AGG | - | chr8.4:79827107-79827126 | MS.gene58616:intron | 40.0% |
| !! | AGGCACTGAAGAACAAAGTT+AGG | + | chr8.4:79827293-79827312 | None:intergenic | 40.0% |
| !! | ATTTTTGGAGGCTTAGGCTT+TGG | - | chr8.4:79827113-79827132 | MS.gene58616:intron | 40.0% |
| !! | GTAATGGGGTTCTTGCTATT+GGG | - | chr8.4:79826808-79826827 | MS.gene58616:CDS | 40.0% |
| !! | TAAGGTAGGCATTGATGACA+TGG | - | chr8.4:79827024-79827043 | MS.gene58616:CDS | 40.0% |
| !! | TTGTGCTGTGTATTTCTGGA+AGG | - | chr8.4:79827374-79827393 | MS.gene58616:intron | 40.0% |
| AACCAGTAGCTACTATCGTG+GGG | - | chr8.4:79827812-79827831 | MS.gene58616:intron | 45.0% | |
| AGGTGGAGGGAATATAATGG+AGG | - | chr8.4:79827047-79827066 | MS.gene58616:CDS | 45.0% | |
| ATTCGAACTGTTGAGCAGGA+TGG | - | chr8.4:79827629-79827648 | MS.gene58616:intron | 45.0% | |
| CACCAGAGTCTCCAATAAGA+AGG | + | chr8.4:79826549-79826568 | None:intergenic | 45.0% | |
| CTCCTTCTTATTGGAGACTC+TGG | - | chr8.4:79826544-79826563 | MS.gene58616:CDS | 45.0% | |
| CTTATTGGAGACTCTGGTGT+TGG | - | chr8.4:79826550-79826569 | MS.gene58616:CDS | 45.0% | |
| TAATGGAGGGAACTGGACTA+GGG | - | chr8.4:79827061-79827080 | MS.gene58616:CDS | 45.0% | |
| TGGAGGTGGAGGGAATATAA+TGG | - | chr8.4:79827044-79827063 | MS.gene58616:CDS | 45.0% | |
| TGTCCTAAATCGTTCTTGCC+CGG | + | chr8.4:79827790-79827809 | None:intergenic | 45.0% | |
| TTCGAACTGTTGAGCAGGAT+GGG | - | chr8.4:79827630-79827649 | MS.gene58616:intron | 45.0% | |
| ! | ATAATGGAGGGAACTGGACT+AGG | - | chr8.4:79827060-79827079 | MS.gene58616:CDS | 45.0% |
| ! | ATTGATGACATGGAGGTGGA+GGG | - | chr8.4:79827034-79827053 | MS.gene58616:CDS | 45.0% |
| ! | GGGAATATAATGGAGGGAAC+TGG | - | chr8.4:79827054-79827073 | MS.gene58616:CDS | 45.0% |
| ! | GGTGGAGGGAATATAATGGA+GGG | - | chr8.4:79827048-79827067 | MS.gene58616:CDS | 45.0% |
| ! | GTAGGAGAAGTGTGTAAGGT+AGG | - | chr8.4:79826897-79826916 | MS.gene58616:CDS | 45.0% |
| CCTGATTAGCGTCCAATGTG+CGG | - | chr8.4:79826831-79826850 | MS.gene58616:CDS | 50.0% | |
| ! | AATGGAGGGAACTGGACTAG+GGG | - | chr8.4:79827062-79827081 | MS.gene58616:CDS | 50.0% |
| ! | CATTGATGACATGGAGGTGG+AGG | - | chr8.4:79827033-79827052 | MS.gene58616:CDS | 50.0% |
| ! | TTCTTGTAGTGGGACACTGC+CGG | - | chr8.4:79827768-79827787 | MS.gene58616:intron | 50.0% |
| !! | AGGCATTGATGACATGGAGG+TGG | - | chr8.4:79827030-79827049 | MS.gene58616:CDS | 50.0% |
| !! | GGTAGGCATTGATGACATGG+AGG | - | chr8.4:79827027-79827046 | MS.gene58616:CDS | 50.0% |
| AGCTACTATCGTGGGGCACA+TGG | - | chr8.4:79827819-79827838 | MS.gene58616:intron | 55.0% | |
| CCGCACATTGGACGCTAATC+AGG | + | chr8.4:79826834-79826853 | None:intergenic | 55.0% | |
| CTGCCGGGCAAGAACGATTT+AGG | - | chr8.4:79827784-79827803 | MS.gene58616:intron | 55.0% | |
| TGCCCCACGATAGTAGCTAC+TGG | + | chr8.4:79827817-79827836 | None:intergenic | 55.0% | |
| ! | ATCCTTGATGGCAGCAGCCA+TGG | + | chr8.4:79828313-79828332 | None:intergenic | 55.0% |
| ! | TCTTGTAGTGGGACACTGCC+GGG | - | chr8.4:79827769-79827788 | MS.gene58616:intron | 55.0% |
| !! | GGAAGGAGCATTCATGGCCA+TGG | - | chr8.4:79828293-79828312 | MS.gene58616:CDS | 55.0% |
| ! | AGGGAACTGGACTAGGGGAG+GGG | - | chr8.4:79827067-79827086 | MS.gene58616:intron | 60.0% |
| ! | GAGGGAACTGGACTAGGGGA+GGG | - | chr8.4:79827066-79827085 | MS.gene58616:CDS | 60.0% |
| GGCCATGGCTGCTGCCATCA+AGG | - | chr8.4:79828308-79828327 | MS.gene58616:CDS | 65.0% | |
| ! | GGAGGGAACTGGACTAGGGG+AGG | - | chr8.4:79827065-79827084 | MS.gene58616:CDS | 65.0% |
| ! | GGGAACTGGACTAGGGGAGG+GGG | - | chr8.4:79827068-79827087 | MS.gene58616:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 79826528 | 79828334 | 79826528 | ID=MS.gene58616 |
| chr8.4 | mRNA | 79826528 | 79828334 | 79826528 | ID=MS.gene58616.t1;Parent=MS.gene58616 |
| chr8.4 | exon | 79828262 | 79828334 | 79828262 | ID=MS.gene58616.t1.exon1;Parent=MS.gene58616.t1 |
| chr8.4 | CDS | 79828262 | 79828334 | 79828262 | ID=cds.MS.gene58616.t1;Parent=MS.gene58616.t1 |
| chr8.4 | exon | 79827328 | 79827375 | 79827328 | ID=MS.gene58616.t1.exon2;Parent=MS.gene58616.t1 |
| chr8.4 | CDS | 79827328 | 79827375 | 79827328 | ID=cds.MS.gene58616.t1;Parent=MS.gene58616.t1 |
| chr8.4 | exon | 79827189 | 79827236 | 79827189 | ID=MS.gene58616.t1.exon3;Parent=MS.gene58616.t1 |
| chr8.4 | CDS | 79827189 | 79827236 | 79827189 | ID=cds.MS.gene58616.t1;Parent=MS.gene58616.t1 |
| chr8.4 | exon | 79827014 | 79827085 | 79827014 | ID=MS.gene58616.t1.exon4;Parent=MS.gene58616.t1 |
| chr8.4 | CDS | 79827014 | 79827085 | 79827014 | ID=cds.MS.gene58616.t1;Parent=MS.gene58616.t1 |
| chr8.4 | exon | 79826769 | 79826924 | 79826769 | ID=MS.gene58616.t1.exon5;Parent=MS.gene58616.t1 |
| chr8.4 | CDS | 79826769 | 79826924 | 79826769 | ID=cds.MS.gene58616.t1;Parent=MS.gene58616.t1 |
| chr8.4 | exon | 79826528 | 79826631 | 79826528 | ID=MS.gene58616.t1.exon6;Parent=MS.gene58616.t1 |
| chr8.4 | CDS | 79826528 | 79826631 | 79826528 | ID=cds.MS.gene58616.t1;Parent=MS.gene58616.t1 |
| Gene Sequence |
| Protein sequence |
