Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61421.t1 | XP_013453061.1 | 97.4 | 468 | 12 | 0 | 4 | 471 | 35 | 502 | 8.50E-264 | 919.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61421.t1 | Q56YU0 | 74.0 | 469 | 121 | 1 | 4 | 471 | 33 | 501 | 8.4e-204 | 711.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61421.t1 | G7KNI3 | 97.4 | 468 | 12 | 0 | 4 | 471 | 35 | 502 | 6.1e-264 | 919.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61421.t1 | MTR_6g086300 | 97.436 | 468 | 12 | 0 | 4 | 471 | 35 | 502 | 0.0 | 937 |
MS.gene61421.t1 | MTR_6g086300 | 97.436 | 468 | 12 | 0 | 4 | 471 | 35 | 502 | 0.0 | 937 |
MS.gene61421.t1 | MTR_8g083530 | 82.479 | 468 | 82 | 0 | 4 | 471 | 36 | 503 | 0.0 | 803 |
MS.gene61421.t1 | MTR_6g086340 | 82.051 | 468 | 84 | 0 | 4 | 471 | 33 | 500 | 0.0 | 791 |
MS.gene61421.t1 | MTR_8g083520 | 79.701 | 468 | 62 | 1 | 4 | 471 | 27 | 461 | 0.0 | 772 |
MS.gene61421.t1 | MTR_8g083520 | 79.952 | 414 | 50 | 1 | 58 | 471 | 1 | 381 | 0.0 | 687 |
MS.gene61421.t1 | MTR_4g107040 | 57.265 | 468 | 200 | 0 | 4 | 471 | 77 | 544 | 0.0 | 572 |
MS.gene61421.t1 | MTR_8g064170 | 57.692 | 468 | 198 | 0 | 4 | 471 | 74 | 541 | 0.0 | 571 |
MS.gene61421.t1 | MTR_3g078170 | 57.906 | 468 | 197 | 0 | 4 | 471 | 75 | 542 | 0.0 | 568 |
MS.gene61421.t1 | MTR_8g083530 | 80.128 | 312 | 62 | 0 | 4 | 315 | 36 | 347 | 0.0 | 513 |
MS.gene61421.t1 | MTR_8g064170 | 52.991 | 468 | 188 | 1 | 4 | 471 | 74 | 509 | 1.51e-180 | 515 |
MS.gene61421.t1 | MTR_3g078170 | 56.545 | 382 | 166 | 0 | 4 | 385 | 75 | 456 | 1.24e-155 | 449 |
MS.gene61421.t1 | MTR_3g078170 | 56.583 | 357 | 155 | 0 | 4 | 360 | 75 | 431 | 5.25e-143 | 417 |
MS.gene61421.t1 | MTR_3g078170 | 56.389 | 360 | 157 | 0 | 4 | 363 | 75 | 434 | 6.90e-143 | 417 |
MS.gene61421.t1 | MTR_3g078550 | 43.284 | 469 | 255 | 5 | 11 | 470 | 28 | 494 | 8.26e-120 | 360 |
MS.gene61421.t1 | MTR_3g078490 | 42.217 | 469 | 260 | 5 | 11 | 470 | 58 | 524 | 8.88e-118 | 356 |
MS.gene61421.t1 | MTR_4g106510 | 42.827 | 474 | 260 | 5 | 6 | 470 | 23 | 494 | 6.52e-117 | 352 |
MS.gene61421.t1 | MTR_3g078550 | 43.450 | 458 | 248 | 5 | 22 | 470 | 9 | 464 | 8.51e-117 | 351 |
MS.gene61421.t1 | MTR_2g067660 | 37.255 | 459 | 283 | 4 | 5 | 462 | 61 | 515 | 1.19e-99 | 308 |
MS.gene61421.t1 | MTR_1690s0010 | 40.785 | 331 | 191 | 4 | 5 | 333 | 23 | 350 | 4.59e-75 | 239 |
MS.gene61421.t1 | MTR_3g078490 | 41.745 | 321 | 178 | 4 | 6 | 319 | 23 | 341 | 4.43e-68 | 222 |
MS.gene61421.t1 | MTR_2g034160 | 30.928 | 485 | 293 | 16 | 3 | 462 | 61 | 528 | 5.87e-60 | 207 |
MS.gene61421.t1 | MTR_1g014320 | 28.454 | 485 | 307 | 11 | 4 | 467 | 29 | 494 | 8.45e-57 | 196 |
MS.gene61421.t1 | MTR_2g009750 | 32.906 | 468 | 288 | 13 | 9 | 462 | 33 | 488 | 1.40e-56 | 196 |
MS.gene61421.t1 | MTR_2g009750 | 32.762 | 467 | 289 | 13 | 9 | 462 | 32 | 486 | 1.61e-56 | 196 |
MS.gene61421.t1 | MTR_4g093170 | 32.347 | 473 | 294 | 13 | 3 | 461 | 54 | 514 | 1.81e-56 | 196 |
MS.gene61421.t1 | MTR_2g009750 | 32.762 | 467 | 289 | 13 | 9 | 462 | 33 | 487 | 2.04e-56 | 195 |
MS.gene61421.t1 | MTR_4g131180 | 28.361 | 476 | 305 | 10 | 4 | 462 | 29 | 485 | 3.52e-54 | 189 |
MS.gene61421.t1 | MTR_4g131180 | 28.315 | 445 | 284 | 9 | 4 | 432 | 29 | 454 | 3.17e-50 | 178 |
MS.gene61421.t1 | MTR_2g042330 | 28.000 | 475 | 323 | 13 | 4 | 468 | 33 | 498 | 3.83e-49 | 176 |
MS.gene61421.t1 | MTR_1399s0020 | 28.338 | 367 | 209 | 5 | 96 | 459 | 20 | 335 | 1.28e-35 | 135 |
MS.gene61421.t1 | MTR_8g076480 | 30.747 | 348 | 217 | 11 | 125 | 462 | 106 | 439 | 7.43e-34 | 133 |
MS.gene61421.t1 | MTR_2g097950 | 29.647 | 425 | 260 | 16 | 63 | 466 | 51 | 457 | 2.52e-31 | 126 |
MS.gene61421.t1 | MTR_8g094600 | 28.000 | 350 | 242 | 7 | 122 | 468 | 163 | 505 | 8.69e-31 | 125 |
MS.gene61421.t1 | MTR_1g029840 | 28.696 | 345 | 234 | 9 | 122 | 462 | 110 | 446 | 2.47e-29 | 120 |
MS.gene61421.t1 | MTR_1g029840 | 28.696 | 345 | 234 | 9 | 122 | 462 | 110 | 446 | 2.88e-29 | 120 |
MS.gene61421.t1 | MTR_3g088150 | 28.319 | 339 | 233 | 8 | 127 | 462 | 117 | 448 | 1.58e-28 | 118 |
MS.gene61421.t1 | MTR_2g097950 | 28.297 | 417 | 241 | 15 | 63 | 466 | 51 | 422 | 2.29e-26 | 111 |
MS.gene61421.t1 | MTR_1222s0010 | 32.075 | 265 | 161 | 7 | 127 | 387 | 105 | 354 | 1.44e-25 | 110 |
MS.gene61421.t1 | MTR_1314s0010 | 26.989 | 352 | 223 | 8 | 128 | 461 | 1 | 336 | 6.42e-24 | 102 |
MS.gene61421.t1 | MTR_4g065040 | 29.642 | 307 | 195 | 9 | 127 | 424 | 104 | 398 | 2.72e-23 | 102 |
MS.gene61421.t1 | MTR_1g071870 | 85.714 | 42 | 6 | 0 | 413 | 454 | 227 | 268 | 8.11e-18 | 85.9 |
MS.gene61421.t1 | MTR_0002s0820 | 53.846 | 52 | 24 | 0 | 217 | 268 | 92 | 143 | 2.59e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61421.t1 | AT3G24503 | 73.987 | 469 | 121 | 1 | 4 | 471 | 33 | 501 | 0.0 | 728 |
MS.gene61421.t1 | AT3G48000 | 58.120 | 468 | 196 | 0 | 4 | 471 | 71 | 538 | 0.0 | 575 |
MS.gene61421.t1 | AT1G23800 | 57.479 | 468 | 199 | 0 | 4 | 471 | 67 | 534 | 0.0 | 564 |
MS.gene61421.t1 | AT3G48170 | 43.460 | 474 | 257 | 6 | 6 | 470 | 23 | 494 | 7.91e-132 | 390 |
MS.gene61421.t1 | AT1G74920 | 43.830 | 470 | 251 | 6 | 11 | 470 | 28 | 494 | 6.56e-131 | 388 |
MS.gene61421.t1 | AT1G74920 | 43.830 | 470 | 246 | 7 | 11 | 470 | 28 | 489 | 3.92e-129 | 384 |
MS.gene61421.t1 | AT1G23800 | 57.051 | 312 | 134 | 0 | 4 | 315 | 67 | 378 | 6.92e-123 | 364 |
MS.gene61421.t1 | AT1G79440 | 39.207 | 454 | 267 | 7 | 12 | 462 | 74 | 521 | 1.20e-95 | 298 |
MS.gene61421.t1 | AT2G14170 | 34.894 | 470 | 276 | 12 | 9 | 462 | 23 | 478 | 6.18e-65 | 218 |
MS.gene61421.t1 | AT2G14170 | 35.747 | 442 | 265 | 9 | 9 | 437 | 132 | 567 | 4.40e-64 | 218 |
MS.gene61421.t1 | AT2G14170 | 35.032 | 471 | 274 | 13 | 9 | 462 | 132 | 587 | 4.99e-64 | 218 |
MS.gene61421.t1 | AT3G66658 | 32.000 | 425 | 260 | 10 | 56 | 462 | 115 | 528 | 2.69e-59 | 204 |
MS.gene61421.t1 | AT3G66658 | 29.289 | 478 | 310 | 10 | 3 | 462 | 61 | 528 | 6.26e-59 | 204 |
MS.gene61421.t1 | AT2G24270 | 29.278 | 485 | 303 | 12 | 4 | 467 | 29 | 494 | 3.88e-56 | 194 |
MS.gene61421.t1 | AT2G24270 | 29.278 | 485 | 303 | 12 | 4 | 467 | 29 | 494 | 3.88e-56 | 194 |
MS.gene61421.t1 | AT2G24270 | 29.278 | 485 | 303 | 12 | 4 | 467 | 29 | 494 | 4.52e-56 | 194 |
MS.gene61421.t1 | AT2G24270 | 29.278 | 485 | 303 | 12 | 4 | 467 | 69 | 534 | 7.84e-56 | 194 |
MS.gene61421.t1 | AT1G54100 | 28.964 | 473 | 305 | 15 | 10 | 466 | 38 | 495 | 5.64e-51 | 181 |
MS.gene61421.t1 | AT1G54100 | 28.964 | 473 | 305 | 15 | 10 | 466 | 38 | 495 | 5.64e-51 | 181 |
MS.gene61421.t1 | AT1G44170 | 30.233 | 344 | 220 | 11 | 127 | 462 | 48 | 379 | 7.28e-32 | 126 |
MS.gene61421.t1 | AT1G44170 | 30.233 | 344 | 220 | 11 | 127 | 462 | 111 | 442 | 1.23e-31 | 127 |
MS.gene61421.t1 | AT1G44170 | 30.233 | 344 | 220 | 11 | 127 | 462 | 111 | 442 | 1.23e-31 | 127 |
MS.gene61421.t1 | AT4G34240 | 30.172 | 348 | 225 | 9 | 122 | 462 | 27 | 363 | 1.73e-27 | 114 |
MS.gene61421.t1 | AT4G34240 | 30.172 | 348 | 225 | 9 | 122 | 462 | 154 | 490 | 7.81e-27 | 114 |
MS.gene61421.t1 | AT4G34240 | 30.172 | 348 | 225 | 9 | 122 | 462 | 169 | 505 | 8.05e-27 | 114 |
MS.gene61421.t1 | AT4G36250 | 27.697 | 343 | 233 | 9 | 127 | 462 | 107 | 441 | 1.34e-26 | 112 |
MS.gene61421.t1 | AT4G34240 | 34.463 | 177 | 107 | 5 | 122 | 297 | 169 | 337 | 1.49e-13 | 72.8 |
Find 93 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTGGGTTTGGAAGAGATTT+TGG | 0.125846 | 6.3:-79725766 | MS.gene61421:CDS |
GCTATCACCTCTTCAGTTCT+TGG | 0.145458 | 6.3:+79733811 | None:intergenic |
CCTTGGCATTGTATTTAATA+AGG | 0.200613 | 6.3:-79727398 | MS.gene61421:intron |
CTATTAGAGCAGGAATTATT+TGG | 0.209132 | 6.3:-79725843 | MS.gene61421:CDS |
TGAGGCCCTTGTTGAGCTTT+AGG | 0.227760 | 6.3:+79727102 | None:intergenic |
AAACCAGTTTCACTTGAATT+AGG | 0.230333 | 6.3:-79727484 | MS.gene61421:CDS |
AGGAATTGTGACAAAGAATT+TGG | 0.234315 | 6.3:-79725890 | MS.gene61421:CDS |
TGCAAAGCTGTTGACATTCC+TGG | 0.258096 | 6.3:-79729017 | MS.gene61421:CDS |
TTTGGAAATGATATTCCTTA+TGG | 0.270970 | 6.3:-79725802 | MS.gene61421:CDS |
TTTCTTTCCATGCTCAATAT+AGG | 0.311322 | 6.3:+79726770 | None:intergenic |
CCTCCTAATTCAAGTGAAAC+TGG | 0.313208 | 6.3:+79727481 | None:intergenic |
AAGCCAAGGAGAATTGTAAA+TGG | 0.319797 | 6.3:+79725696 | None:intergenic |
TGCTAAGGTTGCTCCTGCTT+TGG | 0.325890 | 6.3:-79728838 | MS.gene61421:CDS |
TTTGGCTGCTGGTTGTACTA+TGG | 0.337534 | 6.3:-79728820 | MS.gene61421:CDS |
ATTAATTGCTACTTTGCCTT+TGG | 0.339812 | 6.3:-79725820 | MS.gene61421:CDS |
GTTGCTCCTGCTTTGGCTGC+TGG | 0.344040 | 6.3:-79728831 | MS.gene61421:CDS |
TAGTACCATGTTTGCTGCTA+AGG | 0.345503 | 6.3:-79728853 | MS.gene61421:CDS |
GAGAGAGGTGTTTGTTCAGC+AGG | 0.355299 | 6.3:+79728789 | None:intergenic |
ATAGCACAAGATGAAATATT+TGG | 0.357193 | 6.3:-79726538 | MS.gene61421:CDS |
TAGGGAGAAATTTGTGTTGC+GGG | 0.371803 | 6.3:-79727219 | MS.gene61421:CDS |
TTAACATTAGAGAAAATTGT+AGG | 0.379797 | 6.3:+79726687 | None:intergenic |
TAAGCCATATCTTGTATTGT+TGG | 0.392708 | 6.3:+79725918 | None:intergenic |
AGAAGTAGGACGCGAAATAA+TGG | 0.394529 | 6.3:-79727530 | MS.gene61421:CDS |
TTATGCTCATCTTGCTAAAG+AGG | 0.399330 | 6.3:-79728757 | MS.gene61421:intron |
AGAAAGATAACATACAAAAC+CGG | 0.406438 | 6.3:+79733699 | None:intergenic |
AGTGCCAACAATACAAGATA+TGG | 0.406550 | 6.3:-79725922 | MS.gene61421:CDS |
CTCAATGTAGTACCTGGATT+TGG | 0.417058 | 6.3:-79727711 | MS.gene61421:CDS |
GGTTACAAGATGAGTGGGTT+TGG | 0.425453 | 6.3:-79725778 | MS.gene61421:CDS |
AAAGCAAAAGCTTGGGTTGT+TGG | 0.425909 | 6.3:-79727138 | MS.gene61421:CDS |
GTTGCACGCATATACTTTGA+TGG | 0.434885 | 6.3:-79728919 | MS.gene61421:CDS |
GCACGTGTCGCTTTCGATGA+TGG | 0.445388 | 6.3:-79733739 | MS.gene61421:CDS |
GCGTCCTACTTCTGTTGAAC+CGG | 0.445631 | 6.3:+79727540 | None:intergenic |
TGTTGAGCTTTAGGATCAAA+AGG | 0.447136 | 6.3:+79727111 | None:intergenic |
CTCCCATTTACAATTCTCCT+TGG | 0.461411 | 6.3:-79725699 | MS.gene61421:CDS |
ATTCTTTCCTATATTGAGCA+TGG | 0.472742 | 6.3:-79726777 | MS.gene61421:CDS |
GGTCCATGGCCTCGAATGCC+CGG | 0.479721 | 6.3:-79733718 | MS.gene61421:CDS |
GCTGCTGAACTTGCTCTCCT+TGG | 0.483104 | 6.3:-79727415 | MS.gene61421:CDS |
TAAAGCTCAACAAGGGCCTC+AGG | 0.484785 | 6.3:-79727100 | MS.gene61421:intron |
ATGTGTCCAACGACACCAAT+TGG | 0.485146 | 6.3:+79728894 | None:intergenic |
CTCATCTTGTAACCTCCATA+AGG | 0.495022 | 6.3:+79725787 | None:intergenic |
CATACAAAACCGGGCATTCG+AGG | 0.495819 | 6.3:+79733709 | None:intergenic |
TATACTTTGATGGAACCAAT+TGG | 0.504761 | 6.3:-79728909 | MS.gene61421:CDS |
CCAGTTTCACTTGAATTAGG+AGG | 0.507212 | 6.3:-79727481 | MS.gene61421:CDS |
ACAAGATATGGCTTAGCAGC+AGG | 0.508629 | 6.3:-79725910 | MS.gene61421:CDS |
CTCACACATGGACATTGATA+AGG | 0.508629 | 6.3:-79727664 | MS.gene61421:intron |
CGTATTGTATTTGCTACTCC+AGG | 0.509588 | 6.3:+79728999 | None:intergenic |
TTTACCGGTTCAACAGAAGT+AGG | 0.510988 | 6.3:-79727544 | MS.gene61421:CDS |
CCTGCAGTTGCACCAAATCC+AGG | 0.511462 | 6.3:+79727699 | None:intergenic |
CCTGGATTTGGTGCAACTGC+AGG | 0.511851 | 6.3:-79727699 | MS.gene61421:CDS |
CGATGAATTTGAGAAGAAGT+TGG | 0.514770 | 6.3:-79727166 | MS.gene61421:CDS |
AGCCAAGGAGAATTGTAAAT+GGG | 0.514796 | 6.3:+79725697 | None:intergenic |
TTAGCAGCAAACATGGTACT+AGG | 0.515659 | 6.3:+79728855 | None:intergenic |
ATTGAGCATGGAAAGAAAGA+TGG | 0.516757 | 6.3:-79726765 | MS.gene61421:CDS |
TCTCGTGTGTTTGTTCAAGA+AGG | 0.516942 | 6.3:-79727195 | MS.gene61421:CDS |
TCGTTGGACACATTATTCCT+TGG | 0.518546 | 6.3:-79728884 | MS.gene61421:CDS |
TGGTGGAGAAAGCAAAAGCT+TGG | 0.521312 | 6.3:-79727146 | MS.gene61421:CDS |
AAACCGGGCATTCGAGGCCA+TGG | 0.526543 | 6.3:+79733715 | None:intergenic |
ATGGAACCAATTGGTGTCGT+TGG | 0.526581 | 6.3:-79728900 | MS.gene61421:CDS |
GGTGGAGAAAGCAAAAGCTT+GGG | 0.528430 | 6.3:-79727145 | MS.gene61421:CDS |
GCATTAGATACAATTGATGC+TGG | 0.528668 | 6.3:-79729056 | MS.gene61421:CDS |
GTATCAAGGTCTATTAGAGC+AGG | 0.535317 | 6.3:-79725853 | MS.gene61421:CDS |
TATGCGTGCAACTCCCGAGC+AGG | 0.536698 | 6.3:+79728930 | None:intergenic |
GTACAACCAGCAGCCAAAGC+AGG | 0.548363 | 6.3:+79728825 | None:intergenic |
TGAATTTGAGAAGAAGTTGG+TGG | 0.551667 | 6.3:-79727163 | MS.gene61421:CDS |
ATGGAGGTTACAAGATGAGT+GGG | 0.552864 | 6.3:-79725783 | MS.gene61421:CDS |
GGAAATGATATTCCTTATGG+AGG | 0.555770 | 6.3:-79725799 | MS.gene61421:CDS |
TCGCTTTCGATGATGGTCCA+TGG | 0.556240 | 6.3:-79733732 | MS.gene61421:CDS |
TTTAAGGCGGGAATTCCTGA+TGG | 0.562827 | 6.3:-79727738 | MS.gene61421:intron |
TTAGGGAGAAATTTGTGTTG+CGG | 0.565230 | 6.3:-79727220 | MS.gene61421:intron |
ACTACATTGAGTACTCCATC+AGG | 0.570362 | 6.3:+79727723 | None:intergenic |
GGTGCTGCGGATAAAATTCA+CGG | 0.573577 | 6.3:-79728966 | MS.gene61421:CDS |
AACTTCATGAGTGCCATCAC+AGG | 0.575150 | 6.3:+79726514 | None:intergenic |
AGCAACCTTAGCAGCAAACA+TGG | 0.575308 | 6.3:+79728848 | None:intergenic |
AATAGATCCAAGAACTGAAG+AGG | 0.576768 | 6.3:-79733818 | MS.gene61421:CDS |
GGAGTACTCAATGTAGTACC+TGG | 0.578855 | 6.3:-79727717 | MS.gene61421:CDS |
ACGTTACTATGCCGGTGCTG+CGG | 0.582212 | 6.3:-79728979 | MS.gene61421:CDS |
AATACAATACGTTACTATGC+CGG | 0.588004 | 6.3:-79728987 | MS.gene61421:CDS |
ATATAGCAAACACTGTATCA+AGG | 0.588729 | 6.3:-79725867 | MS.gene61421:CDS |
ACAAAGAACATTCAAAGCCA+AGG | 0.595811 | 6.3:+79725682 | None:intergenic |
TGAAATATTTGGTCCTGTGA+TGG | 0.606938 | 6.3:-79726527 | MS.gene61421:CDS |
TATGGAGGTTACAAGATGAG+TGG | 0.608283 | 6.3:-79725784 | MS.gene61421:CDS |
GTGATAGCAAAGATTGCAGA+GGG | 0.610285 | 6.3:-79733796 | MS.gene61421:CDS |
CCTTATTAAATACAATGCCA+AGG | 0.611140 | 6.3:+79727398 | None:intergenic |
ATAAGGAATATCATTTCCAA+AGG | 0.612786 | 6.3:+79725804 | None:intergenic |
AGCTGCAATAAGCTCACACA+TGG | 0.619174 | 6.3:-79727676 | MS.gene61421:CDS |
CATCGATATAGCTGTAAAAG+CGG | 0.622295 | 6.3:-79733761 | MS.gene61421:CDS |
GCATAAAACAAAGCAGAGAG+AGG | 0.624540 | 6.3:+79728774 | None:intergenic |
GAAAGATAACATACAAAACC+GGG | 0.627168 | 6.3:+79733700 | None:intergenic |
GGTGATAGCAAAGATTGCAG+AGG | 0.647879 | 6.3:-79733797 | MS.gene61421:CDS |
TGCGGATAAAATTCACGGCG+AGG | 0.654818 | 6.3:-79728961 | MS.gene61421:CDS |
ATGGTACTAGGAAAATTCCA+AGG | 0.659782 | 6.3:+79728867 | None:intergenic |
TTTGATCCTAAAGCTCAACA+AGG | 0.663711 | 6.3:-79727108 | MS.gene61421:CDS |
TTGATCCTAAAGCTCAACAA+GGG | 0.665851 | 6.3:-79727107 | MS.gene61421:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 79725693 | 79733869 | 79725693 | ID=MS.gene61421 |
chr6.3 | mRNA | 79725693 | 79733869 | 79725693 | ID=MS.gene61421.t1;Parent=MS.gene61421 |
chr6.3 | exon | 79733714 | 79733869 | 79733714 | ID=MS.gene61421.t1.exon1;Parent=MS.gene61421.t1 |
chr6.3 | CDS | 79733714 | 79733869 | 79733714 | ID=cds.MS.gene61421.t1;Parent=MS.gene61421.t1 |
chr6.3 | exon | 79728758 | 79729141 | 79728758 | ID=MS.gene61421.t1.exon2;Parent=MS.gene61421.t1 |
chr6.3 | CDS | 79728758 | 79729141 | 79728758 | ID=cds.MS.gene61421.t1;Parent=MS.gene61421.t1 |
chr6.3 | exon | 79727665 | 79727754 | 79727665 | ID=MS.gene61421.t1.exon3;Parent=MS.gene61421.t1 |
chr6.3 | CDS | 79727665 | 79727754 | 79727665 | ID=cds.MS.gene61421.t1;Parent=MS.gene61421.t1 |
chr6.3 | exon | 79727399 | 79727572 | 79727399 | ID=MS.gene61421.t1.exon4;Parent=MS.gene61421.t1 |
chr6.3 | CDS | 79727399 | 79727572 | 79727399 | ID=cds.MS.gene61421.t1;Parent=MS.gene61421.t1 |
chr6.3 | exon | 79727101 | 79727238 | 79727101 | ID=MS.gene61421.t1.exon5;Parent=MS.gene61421.t1 |
chr6.3 | CDS | 79727101 | 79727238 | 79727101 | ID=cds.MS.gene61421.t1;Parent=MS.gene61421.t1 |
chr6.3 | exon | 79726686 | 79726823 | 79726686 | ID=MS.gene61421.t1.exon6;Parent=MS.gene61421.t1 |
chr6.3 | CDS | 79726686 | 79726823 | 79726686 | ID=cds.MS.gene61421.t1;Parent=MS.gene61421.t1 |
chr6.3 | exon | 79726511 | 79726572 | 79726511 | ID=MS.gene61421.t1.exon7;Parent=MS.gene61421.t1 |
chr6.3 | CDS | 79726511 | 79726572 | 79726511 | ID=cds.MS.gene61421.t1;Parent=MS.gene61421.t1 |
chr6.3 | exon | 79725693 | 79725966 | 79725693 | ID=MS.gene61421.t1.exon8;Parent=MS.gene61421.t1 |
chr6.3 | CDS | 79725693 | 79725966 | 79725693 | ID=cds.MS.gene61421.t1;Parent=MS.gene61421.t1 |
Gene Sequence |
Protein sequence |