Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63886.t1 | XP_003617718.2 | 97.3 | 551 | 12 | 1 | 1 | 551 | 1 | 548 | 0.00E+00 | 1088.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63886.t1 | Q9SJ41 | 43.1 | 568 | 256 | 16 | 1 | 544 | 1 | 525 | 2.1e-105 | 384.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63886.t1 | G7K4G1 | 97.3 | 551 | 12 | 1 | 1 | 551 | 1 | 548 | 0.0e+00 | 1088.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene63886 | 0.821034 | 5.00E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene63886 | 0.810762 | 9.81E-51 | -1.69E-46 |
| MS.gene050380 | MS.gene63886 | -0.832668 | 8.29E-56 | -1.69E-46 |
| MS.gene050381 | MS.gene63886 | -0.809747 | 1.62E-50 | -1.69E-46 |
| MS.gene050520 | MS.gene63886 | 0.803465 | 3.44E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene63886 | 0.814752 | 1.31E-51 | -1.69E-46 |
| MS.gene050686 | MS.gene63886 | 0.803279 | 3.76E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene63886 | 0.824973 | 6.04E-54 | -1.69E-46 |
| MS.gene051255 | MS.gene63886 | 0.826988 | 2.01E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene63886 | 0.820125 | 8.09E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene63886 | 0.809276 | 2.05E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene63886 | 0.85179 | 7.05E-61 | -1.69E-46 |
| MS.gene052999 | MS.gene63886 | 0.808872 | 2.50E-50 | -1.69E-46 |
| MS.gene053018 | MS.gene63886 | 0.839267 | 1.75E-57 | -1.69E-46 |
| MS.gene053213 | MS.gene63886 | 0.804574 | 2.02E-49 | -1.69E-46 |
| MS.gene053505 | MS.gene63886 | 0.802153 | 6.42E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene63886 | 0.814871 | 1.24E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene63886 | 0.802753 | 4.83E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene63886 | 0.804728 | 1.88E-49 | -1.69E-46 |
| MS.gene05492 | MS.gene63886 | 0.823829 | 1.12E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene63886 | 0.806899 | 6.57E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene63886 | 0.837883 | 4.00E-57 | -1.69E-46 |
| MS.gene055647 | MS.gene63886 | 0.807588 | 4.70E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene63886 | 0.844855 | 5.84E-59 | -1.69E-46 |
| MS.gene055941 | MS.gene63886 | 0.804541 | 2.06E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene63886 | 0.803852 | 2.86E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene63886 | 0.831286 | 1.82E-55 | -1.69E-46 |
| MS.gene056448 | MS.gene63886 | 0.845999 | 2.86E-59 | -1.69E-46 |
| MS.gene056511 | MS.gene63886 | 0.806695 | 7.26E-50 | -1.69E-46 |
| MS.gene056942 | MS.gene63886 | 0.813557 | 2.41E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene63886 | 0.801288 | 9.66E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene63886 | 0.801923 | 7.16E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene63886 | 0.81083 | 9.48E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene63886 | 0.820598 | 6.30E-53 | -1.69E-46 |
| MS.gene05883 | MS.gene63886 | 0.80794 | 3.95E-50 | -1.69E-46 |
| MS.gene058840 | MS.gene63886 | -0.8184 | 2.00E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene63886 | 0.803771 | 2.97E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene63886 | 0.818912 | 1.53E-52 | -1.69E-46 |
| MS.gene059902 | MS.gene63886 | 0.852273 | 5.15E-61 | -1.69E-46 |
| MS.gene060482 | MS.gene63886 | 0.843055 | 1.77E-58 | -1.69E-46 |
| MS.gene060804 | MS.gene63886 | 0.806599 | 7.61E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene63886 | 0.81435 | 1.61E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene63886 | 0.865162 | 7.21E-65 | -1.69E-46 |
| MS.gene061200 | MS.gene63886 | 0.81242 | 4.28E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63886.t1 | MTR_5g094700 | 97.278 | 551 | 12 | 1 | 1 | 551 | 1 | 548 | 0.0 | 1124 |
| MS.gene63886.t1 | MTR_3g056160 | 60.326 | 552 | 185 | 10 | 1 | 548 | 1 | 522 | 0.0 | 636 |
| MS.gene63886.t1 | MTR_3g436060 | 35.063 | 559 | 235 | 23 | 1 | 479 | 1 | 511 | 2.31e-62 | 218 |
| MS.gene63886.t1 | MTR_5g008900 | 34.896 | 384 | 182 | 13 | 119 | 479 | 186 | 524 | 5.25e-47 | 175 |
| MS.gene63886.t1 | MTR_0005s0130 | 51.974 | 152 | 66 | 2 | 335 | 479 | 321 | 472 | 8.14e-38 | 148 |
| MS.gene63886.t1 | MTR_0005s0130 | 29.258 | 229 | 121 | 6 | 1 | 208 | 1 | 209 | 4.56e-16 | 82.0 |
| MS.gene63886.t1 | MTR_4g043660 | 51.974 | 152 | 66 | 2 | 335 | 479 | 321 | 472 | 8.14e-38 | 148 |
| MS.gene63886.t1 | MTR_4g043660 | 29.258 | 229 | 121 | 6 | 1 | 208 | 1 | 209 | 4.56e-16 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63886.t1 | AT2G05160 | 42.531 | 569 | 258 | 16 | 1 | 544 | 1 | 525 | 2.39e-132 | 396 |
| MS.gene63886.t1 | AT2G05160 | 42.531 | 569 | 258 | 16 | 1 | 544 | 1 | 525 | 2.39e-132 | 396 |
| MS.gene63886.t1 | AT2G05160 | 46.960 | 477 | 211 | 12 | 1 | 466 | 1 | 446 | 5.10e-130 | 389 |
| MS.gene63886.t1 | AT3G52980 | 46.135 | 401 | 172 | 10 | 1 | 395 | 1 | 363 | 8.14e-103 | 315 |
| MS.gene63886.t1 | AT3G51950 | 32.124 | 579 | 255 | 20 | 1 | 546 | 1 | 474 | 5.77e-59 | 205 |
| MS.gene63886.t1 | AT3G51950 | 32.124 | 579 | 255 | 20 | 1 | 546 | 1 | 474 | 5.77e-59 | 205 |
| MS.gene63886.t1 | AT3G51950 | 32.124 | 579 | 255 | 20 | 1 | 546 | 1 | 474 | 5.77e-59 | 205 |
| MS.gene63886.t1 | AT3G51950 | 32.124 | 579 | 255 | 20 | 1 | 546 | 1 | 474 | 5.77e-59 | 205 |
| MS.gene63886.t1 | AT3G21100 | 33.075 | 517 | 262 | 20 | 1 | 479 | 1 | 471 | 9.11e-53 | 189 |
| MS.gene63886.t1 | AT3G21100 | 33.075 | 517 | 262 | 20 | 1 | 479 | 1 | 471 | 9.11e-53 | 189 |
| MS.gene63886.t1 | AT3G21100 | 33.012 | 518 | 262 | 20 | 1 | 479 | 1 | 472 | 3.47e-52 | 188 |
| MS.gene63886.t1 | AT3G21100 | 33.012 | 518 | 262 | 20 | 1 | 479 | 1 | 472 | 3.47e-52 | 188 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 231 | 510 | 4.77e-42 | 160 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 231 | 510 | 4.77e-42 | 160 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 231 | 510 | 4.77e-42 | 160 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 231 | 510 | 4.77e-42 | 160 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 231 | 510 | 4.77e-42 | 160 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 231 | 510 | 4.77e-42 | 160 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 231 | 510 | 4.77e-42 | 160 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 262 | 541 | 1.09e-41 | 159 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 262 | 541 | 1.09e-41 | 159 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 262 | 541 | 1.09e-41 | 159 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 262 | 541 | 1.09e-41 | 159 |
| MS.gene63886.t1 | AT5G12440 | 36.943 | 314 | 143 | 13 | 187 | 479 | 262 | 541 | 1.09e-41 | 159 |
| MS.gene63886.t1 | AT3G63450 | 51.656 | 151 | 57 | 3 | 329 | 479 | 39 | 173 | 5.55e-35 | 134 |
| MS.gene63886.t1 | AT1G51520 | 54.545 | 110 | 50 | 0 | 316 | 425 | 245 | 354 | 3.22e-34 | 134 |
| MS.gene63886.t1 | AT3G63450 | 53.103 | 145 | 52 | 3 | 335 | 479 | 153 | 281 | 5.62e-34 | 133 |
| MS.gene63886.t1 | AT3G63450 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 1.02e-13 | 73.6 |
| MS.gene63886.t1 | AT3G63450 | 53.103 | 145 | 52 | 3 | 335 | 479 | 153 | 281 | 5.62e-34 | 133 |
| MS.gene63886.t1 | AT3G63450 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 1.02e-13 | 73.6 |
| MS.gene63886.t1 | AT1G51520 | 54.545 | 110 | 50 | 0 | 316 | 425 | 245 | 354 | 6.84e-34 | 135 |
| MS.gene63886.t1 | AT3G63450 | 53.103 | 145 | 54 | 4 | 335 | 479 | 153 | 283 | 9.86e-34 | 132 |
| MS.gene63886.t1 | AT3G63450 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 1.09e-13 | 73.6 |
| MS.gene63886.t1 | AT3G63450 | 53.103 | 145 | 54 | 4 | 335 | 479 | 153 | 283 | 9.86e-34 | 132 |
| MS.gene63886.t1 | AT3G63450 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 1.09e-13 | 73.6 |
| MS.gene63886.t1 | AT3G63450 | 53.103 | 145 | 54 | 4 | 335 | 479 | 153 | 283 | 9.86e-34 | 132 |
| MS.gene63886.t1 | AT3G63450 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 1.09e-13 | 73.6 |
| MS.gene63886.t1 | AT3G63450 | 53.103 | 145 | 54 | 4 | 335 | 479 | 153 | 283 | 1.37e-33 | 132 |
| MS.gene63886.t1 | AT3G63450 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 1.29e-13 | 73.2 |
| MS.gene63886.t1 | AT1G51530 | 36.496 | 137 | 71 | 4 | 348 | 479 | 185 | 310 | 4.47e-12 | 68.6 |
Find 115 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCATTTCACCTCATTT+TGG | 0.145853 | 5.1:-75866687 | MS.gene63886:CDS |
| TGAAACTGTGAGAATGATTT+TGG | 0.186946 | 5.1:-75869052 | MS.gene63886:CDS |
| CATCGGTGAAGTCGTCTTTA+AGG | 0.237792 | 5.1:-75870255 | MS.gene63886:CDS |
| GATGTTTCTGCTGTCAATTT+TGG | 0.256613 | 5.1:-75869918 | MS.gene63886:CDS |
| AAAATCATTCTCACAGTTTC+AGG | 0.261214 | 5.1:+75869054 | None:intergenic |
| TTCAAGTTCCATCTTCCTAT+TGG | 0.269145 | 5.1:-75870109 | MS.gene63886:CDS |
| TGCAGATCATTTCAATTTCC+AGG | 0.277618 | 5.1:-75866541 | MS.gene63886:intron |
| GAAAATGCTAGAAAGATTAT+TGG | 0.297193 | 5.1:-75870344 | MS.gene63886:CDS |
| GTGTGCTTGTGAAACCTTAC+AGG | 0.303127 | 5.1:-75868996 | MS.gene63886:CDS |
| TCCAATGGAAAATGATAAAT+AGG | 0.307495 | 5.1:-75865960 | None:intergenic |
| CTATGGTTCCCATAACTTCT+TGG | 0.316770 | 5.1:+75866801 | None:intergenic |
| ACAAACGCAATTGCTGAGTT+TGG | 0.320917 | 5.1:-75870009 | MS.gene63886:CDS |
| CGGACAACATGCAGTGGTTC+TGG | 0.321883 | 5.1:-75869385 | MS.gene63886:CDS |
| TCAAGTTCCATCTTCCTATT+GGG | 0.324176 | 5.1:-75870108 | MS.gene63886:CDS |
| TAATTCATTCCCGTAAATTC+AGG | 0.326064 | 5.1:+75870059 | None:intergenic |
| ATACTATGATAAATATAAAA+AGG | 0.328732 | 5.1:-75869610 | MS.gene63886:CDS |
| CAAAACTGATCTTCAAATAA+TGG | 0.329252 | 5.1:-75870231 | MS.gene63886:CDS |
| CCTTGTTGAGGGTTGACATT+AGG | 0.334473 | 5.1:+75870176 | None:intergenic |
| CAATGCAAATCCTGAATTTA+CGG | 0.340099 | 5.1:-75870069 | MS.gene63886:CDS |
| TGCCAGCAGAAAAGAATGTT+TGG | 0.350390 | 5.1:-75869096 | MS.gene63886:CDS |
| CATTATTTGAAGATCAGTTT+TGG | 0.350768 | 5.1:+75870232 | None:intergenic |
| AAACCCAAAATGAGGTGAAA+TGG | 0.352315 | 5.1:+75866683 | None:intergenic |
| GGAATCAGTGTCAGTATTCT+TGG | 0.353353 | 5.1:+75866482 | None:intergenic |
| ATCTCTAAGTAGACAGTTGA+TGG | 0.353788 | 5.1:-75866778 | MS.gene63886:CDS |
| GCTGAGTTTGGAGAATCATT+TGG | 0.355136 | 5.1:-75869997 | MS.gene63886:CDS |
| ACGGAGATAATGCCGGAAAA+TGG | 0.364430 | 5.1:+75870147 | None:intergenic |
| TTGGGTATGTTGAAGATGTT+AGG | 0.367518 | 5.1:-75869125 | MS.gene63886:CDS |
| ACCTTTGTCTTCTCCCTGTA+AGG | 0.370558 | 5.1:+75868982 | None:intergenic |
| TTATTCAACGCATGATTTAG+AGG | 0.390101 | 5.1:+75866510 | None:intergenic |
| TTGACATTAGGTGGCGGAAT+TGG | 0.398675 | 5.1:+75870188 | None:intergenic |
| AAATTCAGGATTTGCATTGC+TGG | 0.403668 | 5.1:+75870073 | None:intergenic |
| TTGGTGGAAAAGCTACAAAA+AGG | 0.409932 | 5.1:-75869899 | MS.gene63886:CDS |
| TATGCAGTTCCAAGAAGTTA+TGG | 0.410433 | 5.1:-75866810 | MS.gene63886:intron |
| AACAGCAAGACCTCGAGTTC+CGG | 0.412720 | 5.1:+75869962 | None:intergenic |
| AATGCAAATCCTGAATTTAC+GGG | 0.416071 | 5.1:-75870068 | MS.gene63886:CDS |
| CTGATTCCTCTGGAGGGAAT+AGG | 0.424239 | 5.1:-75866467 | MS.gene63886:intron |
| GCCAGCAGAAAAGAATGTTT+GGG | 0.424611 | 5.1:-75869095 | MS.gene63886:CDS |
| AGCCAGCGACATGGTAAGTC+TGG | 0.430698 | 5.1:-75869558 | MS.gene63886:CDS |
| AGACAATGGCGAACAAGAAA+TGG | 0.433416 | 5.1:-75870306 | MS.gene63886:CDS |
| GGAAATGCAAATGGACTGTC+GGG | 0.437019 | 5.1:+75865980 | None:intergenic |
| ATAGTATTCGGCTAATTGAT+AGG | 0.438290 | 5.1:-75869503 | MS.gene63886:intron |
| ATCTGTCATTATTTCAGTAA+AGG | 0.443297 | 5.1:-75869840 | MS.gene63886:CDS |
| TGCTCCAAAATACATTCAAA+AGG | 0.443413 | 5.1:-75869355 | MS.gene63886:CDS |
| AACCCAAAATGAGGTGAAAT+GGG | 0.452356 | 5.1:+75866684 | None:intergenic |
| ACTGTCTACTTAGAGATCTA+TGG | 0.458496 | 5.1:+75866784 | None:intergenic |
| ATGCAGTTCCAAGAAGTTAT+GGG | 0.460814 | 5.1:-75866809 | MS.gene63886:intron |
| GGTAGATTGTGGATCCCAAT+AGG | 0.466096 | 5.1:+75870094 | None:intergenic |
| TCGCGCGACTCAATAGTATT+CGG | 0.471471 | 5.1:-75869515 | MS.gene63886:CDS |
| TCAGTGAAAGTGCTGTCAGC+TGG | 0.477338 | 5.1:+75869282 | None:intergenic |
| CAGTCCATTTGCATTTCCAA+TGG | 0.489547 | 5.1:-75865975 | MS.gene63886:CDS |
| GATTTAGAGGTTCCGCAGCC+TGG | 0.497491 | 5.1:+75866523 | None:intergenic |
| AGGTGGCGGAATTGGCATCA+TGG | 0.499716 | 5.1:+75870196 | None:intergenic |
| TAATACTAGCAATGAGGATC+CGG | 0.502530 | 5.1:-75869733 | MS.gene63886:CDS |
| CGAACAAGAAATGGCTAGGT+TGG | 0.502766 | 5.1:-75870297 | MS.gene63886:CDS |
| ATTTACGGGAATGAATTACA+TGG | 0.507052 | 5.1:-75870054 | MS.gene63886:CDS |
| AATGGCTTAAACCTTGTTGA+GGG | 0.515579 | 5.1:+75870165 | None:intergenic |
| CATTTGGATCATGTGAATAC+CGG | 0.523621 | 5.1:-75869981 | MS.gene63886:CDS |
| GCTGTTAATGATTACAACAA+TGG | 0.523781 | 5.1:-75869945 | MS.gene63886:CDS |
| CAGGAGGTACCATGATAGAA+TGG | 0.527118 | 5.1:-75867071 | MS.gene63886:CDS |
| CAGAGTGCTCCATTCTATCA+TGG | 0.527589 | 5.1:+75867062 | None:intergenic |
| TGTTGAGGGTTGACATTAGG+TGG | 0.528211 | 5.1:+75870179 | None:intergenic |
| TCATTTCAATTTCCAGGCTG+CGG | 0.529484 | 5.1:-75866535 | MS.gene63886:CDS |
| AATACTGACACTGATTCCTC+TGG | 0.530154 | 5.1:-75866477 | MS.gene63886:CDS |
| GGAAATCCTCATTATGTTCG+TGG | 0.530432 | 5.1:-75869024 | MS.gene63886:CDS |
| AAATGAGGTGAAATGGGAAA+AGG | 0.531747 | 5.1:+75866690 | None:intergenic |
| GTCAATTGCTTCGCTGCCGA+TGG | 0.532551 | 5.1:-75869634 | MS.gene63886:CDS |
| GCTCCAAAATACATTCAAAA+GGG | 0.534969 | 5.1:-75869354 | MS.gene63886:CDS |
| AGTAAAGGTTACTGTAGGCA+TGG | 0.535811 | 5.1:-75869825 | MS.gene63886:CDS |
| TGGAAATGCAAATGGACTGT+CGG | 0.541995 | 5.1:+75865979 | None:intergenic |
| ACTTCACCGATGATGTGGTC+AGG | 0.542534 | 5.1:+75870266 | None:intergenic |
| GAGGATCCGGTGATTTCACC+AGG | 0.545221 | 5.1:-75869720 | MS.gene63886:CDS |
| TGACAGCACTTTCACTGAAG+AGG | 0.547716 | 5.1:-75869277 | MS.gene63886:CDS |
| AAATGGCTTAAACCTTGTTG+AGG | 0.548876 | 5.1:+75870164 | None:intergenic |
| ATTTCAGTAAAGGTTACTGT+AGG | 0.554494 | 5.1:-75869830 | MS.gene63886:CDS |
| TGAAATGGGAAAAGGTCGTC+GGG | 0.556222 | 5.1:+75866698 | None:intergenic |
| TCTTGTCCTGACCACATCAT+CGG | 0.557055 | 5.1:-75870272 | MS.gene63886:CDS |
| TGTGGATCCCAATAGGAAGA+TGG | 0.559950 | 5.1:+75870101 | None:intergenic |
| GACAGTTTCTCTCATATGCA+TGG | 0.561615 | 5.1:-75869765 | MS.gene63886:CDS |
| AGCCAGACTTACCATGTCGC+TGG | 0.562095 | 5.1:+75869556 | None:intergenic |
| AGAAGACAAAGGTTGTTGAA+AGG | 0.562426 | 5.1:-75868972 | MS.gene63886:intron |
| TCGATATTTGCAAAGTGATG+TGG | 0.563281 | 5.1:+75867031 | None:intergenic |
| GGCAGCGAAGCAATTGACAT+TGG | 0.563893 | 5.1:+75869639 | None:intergenic |
| CGAGAGCCACGAACATAATG+AGG | 0.570909 | 5.1:+75869018 | None:intergenic |
| GGAACTCTCAACGCATCCAT+AGG | 0.573720 | 5.1:+75866660 | None:intergenic |
| TGAAAGTTCAGCGGTGAAGA+CGG | 0.575317 | 5.1:+75870128 | None:intergenic |
| TATTTATCATAGTATGCCAT+CGG | 0.579740 | 5.1:+75869618 | None:intergenic |
| TTTGCATTGCTGGTAGATTG+TGG | 0.579975 | 5.1:+75870083 | None:intergenic |
| TCCATAGGAAACCCAAAATG+AGG | 0.584131 | 5.1:+75866675 | None:intergenic |
| AAATAATGACAGATCTTGAG+TGG | 0.586124 | 5.1:+75869849 | None:intergenic |
| ATGGCGAACAAGAAATGGCT+AGG | 0.597763 | 5.1:-75870301 | MS.gene63886:CDS |
| GTGAAATGGGAAAAGGTCGT+CGG | 0.599339 | 5.1:+75866697 | None:intergenic |
| TGGTTGATTTACAGGCCTCA+CGG | 0.603591 | 5.1:-75869405 | MS.gene63886:intron |
| TCTATCTGAGCTAGTGACCC+TGG | 0.610875 | 5.1:+75869702 | None:intergenic |
| AGACGACTTCACCGATGATG+TGG | 0.612232 | 5.1:+75870261 | None:intergenic |
| AGTGACCCTGGTGAAATCAC+CGG | 0.612483 | 5.1:+75869714 | None:intergenic |
| ACTGACACTGATTCCTCTGG+AGG | 0.617261 | 5.1:-75866474 | MS.gene63886:CDS |
| CCTAATGTCAACCCTCAACA+AGG | 0.617801 | 5.1:-75870176 | MS.gene63886:CDS |
| CATGTGAATACCGGAACTCG+AGG | 0.623739 | 5.1:-75869972 | MS.gene63886:CDS |
| GGTGAAGACGGAGATAATGC+CGG | 0.634024 | 5.1:+75870140 | None:intergenic |
| TGAGGGTTGACATTAGGTGG+CGG | 0.637168 | 5.1:+75870182 | None:intergenic |
| AATAATGACAGATCTTGAGT+GGG | 0.652925 | 5.1:+75869850 | None:intergenic |
| TGTATACCTATTCCCTCCAG+AGG | 0.656241 | 5.1:+75866461 | None:intergenic |
| TAATGATAATACTAGCAATG+AGG | 0.661063 | 5.1:-75869739 | MS.gene63886:CDS |
| GCCTCACGGACAACATGCAG+TGG | 0.661109 | 5.1:-75869391 | MS.gene63886:CDS |
| CTGACACTGATTCCTCTGGA+GGG | 0.669158 | 5.1:-75866473 | MS.gene63886:CDS |
| ACCACTGCATGTTGTCCGTG+AGG | 0.679392 | 5.1:+75869390 | None:intergenic |
| TGTGCTTGTGAAACCTTACA+GGG | 0.679592 | 5.1:-75868995 | MS.gene63886:CDS |
| ACCTTACAGGGAGAAGACAA+AGG | 0.680060 | 5.1:-75868983 | MS.gene63886:CDS |
| GATGGAACTTGAAAGTTCAG+CGG | 0.682151 | 5.1:+75870119 | None:intergenic |
| TTAACTGAGAGCCAGCGACA+TGG | 0.684743 | 5.1:-75869567 | MS.gene63886:CDS |
| AAAGGTTACTGTAGGCATGG+AGG | 0.699149 | 5.1:-75869822 | MS.gene63886:CDS |
| GATGCGTTGAGAGTTCCAGA+TGG | 0.726483 | 5.1:-75866654 | MS.gene63886:intron |
| GAAATGCAAATGGACTGTCG+GGG | 0.728060 | 5.1:+75865981 | None:intergenic |
| ATATGAGAGAAACTGTCGTG+AGG | 0.740773 | 5.1:+75869771 | None:intergenic |
| AGGATCCGGTGATTTCACCA+GGG | 0.749562 | 5.1:-75869719 | MS.gene63886:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTATGATAAATATAAAA+AGG | - | chr5.1:75866752-75866771 | MS.gene63886:CDS | 10.0% |
| !! | TCTTTAATAATTATTAACTT+CGG | - | chr5.1:75869259-75869278 | MS.gene63886:CDS | 10.0% |
| !!! | AAGTAAATTATTACATTTTT+TGG | - | chr5.1:75867125-75867144 | MS.gene63886:intron | 10.0% |
| !!! | TTATTTTTCAAAAAATGTTT+AGG | - | chr5.1:75867736-75867755 | MS.gene63886:intron | 10.0% |
| !! | ATAAATTATACAAGTTTGAA+GGG | - | chr5.1:75869048-75869067 | MS.gene63886:CDS | 15.0% |
| !! | ATTATACGTATTAGTAAATT+TGG | - | chr5.1:75867185-75867204 | MS.gene63886:intron | 15.0% |
| !!! | ATATTATAGTTCCTTATTTA+TGG | - | chr5.1:75867998-75868017 | MS.gene63886:intron | 15.0% |
| !!! | TCTTTTCTTTTTGATAATAA+AGG | - | chr5.1:75867426-75867445 | MS.gene63886:intron | 15.0% |
| !! | AACTTTACAAGCATAAATTA+TGG | + | chr5.1:75868158-75868177 | None:intergenic | 20.0% |
| !! | AATATGATTTATGTCAAGAA+AGG | + | chr5.1:75870273-75870292 | None:intergenic | 20.0% |
| !! | AATTTATGCTTGTAAAGTTA+TGG | - | chr5.1:75868159-75868178 | MS.gene63886:intron | 20.0% |
| !! | ATAGTAATTGAGAGAATAAA+TGG | + | chr5.1:75868461-75868480 | None:intergenic | 20.0% |
| !! | ATTATCAAAAAGAAAAGACA+AGG | + | chr5.1:75867424-75867443 | None:intergenic | 20.0% |
| !! | ATTTATGCTTCTGATTTAAA+TGG | - | chr5.1:75867531-75867550 | MS.gene63886:intron | 20.0% |
| !! | CATAAATTATACAAGTTTGA+AGG | - | chr5.1:75869047-75869066 | MS.gene63886:CDS | 20.0% |
| !! | TAAAAAACAAAAAACCTTAC+TGG | - | chr5.1:75869464-75869483 | MS.gene63886:intron | 20.0% |
| !! | TTAAAGAAAACATTCATCAT+AGG | + | chr5.1:75869246-75869265 | None:intergenic | 20.0% |
| !! | TTTATGCTTCTGATTTAAAT+GGG | - | chr5.1:75867532-75867551 | MS.gene63886:intron | 20.0% |
| !!! | ATCATAACTTTGCATATTTT+AGG | + | chr5.1:75869113-75869132 | None:intergenic | 20.0% |
| !!! | CACTGACAAATATAATATTT+TGG | - | chr5.1:75869218-75869237 | MS.gene63886:intron | 20.0% |
| !!! | TATAGTTTTTAAATGTTGTG+AGG | - | chr5.1:75868478-75868497 | MS.gene63886:intron | 20.0% |
| !!! | TTTCATTGATTATTGACAAA+GGG | - | chr5.1:75867895-75867914 | MS.gene63886:intron | 20.0% |
| !!! | TTTTCATTGATTATTGACAA+AGG | - | chr5.1:75867894-75867913 | MS.gene63886:intron | 20.0% |
| ! | AAACAAGTGTCAATAAGTAT+AGG | + | chr5.1:75867155-75867174 | None:intergenic | 25.0% |
| ! | ACTCCAAAATATAAGAAAAC+TGG | - | chr5.1:75868340-75868359 | MS.gene63886:intron | 25.0% |
| ! | AGTGTACATTGTATGTAATA+AGG | - | chr5.1:75868913-75868932 | MS.gene63886:intron | 25.0% |
| ! | ATCTGTCATTATTTCAGTAA+AGG | - | chr5.1:75866522-75866541 | MS.gene63886:CDS | 25.0% |
| ! | ATGTGTACAACTTCAAAAAA+TGG | + | chr5.1:75867659-75867678 | None:intergenic | 25.0% |
| ! | CAAAACTGATCTTCAAATAA+TGG | - | chr5.1:75866131-75866150 | MS.gene63886:intron | 25.0% |
| ! | CAGAACAATAGATTCAAATT+CGG | + | chr5.1:75870105-75870124 | None:intergenic | 25.0% |
| ! | CGTCTAAAAAAATGTTTGAA+GGG | - | chr5.1:75867819-75867838 | MS.gene63886:intron | 25.0% |
| ! | CTCCAAAATATAAGAAAACT+GGG | - | chr5.1:75868341-75868360 | MS.gene63886:intron | 25.0% |
| ! | GAAAATGCTAGAAAGATTAT+TGG | - | chr5.1:75866018-75866037 | MS.gene63886:intron | 25.0% |
| ! | GAGGTGTATAAAAATGATTT+GGG | - | chr5.1:75868497-75868516 | MS.gene63886:intron | 25.0% |
| ! | GTGTACATTGTATGTAATAA+GGG | - | chr5.1:75868914-75868933 | MS.gene63886:intron | 25.0% |
| ! | TAAAACAGTGACCATAAATA+AGG | + | chr5.1:75868012-75868031 | None:intergenic | 25.0% |
| ! | TAATGATAATACTAGCAATG+AGG | - | chr5.1:75866623-75866642 | MS.gene63886:intron | 25.0% |
| ! | TATTTATCATAGTATGCCAT+CGG | + | chr5.1:75866747-75866766 | None:intergenic | 25.0% |
| ! | TATTTCGAGAACTATAGTAA+TGG | - | chr5.1:75868837-75868856 | MS.gene63886:intron | 25.0% |
| ! | TCGTCTAAAAAAATGTTTGA+AGG | - | chr5.1:75867818-75867837 | MS.gene63886:intron | 25.0% |
| ! | TGAGGTGTATAAAAATGATT+TGG | - | chr5.1:75868496-75868515 | MS.gene63886:intron | 25.0% |
| ! | TGGTTTATTTAACATCACAA+AGG | - | chr5.1:75869081-75869100 | MS.gene63886:CDS | 25.0% |
| ! | TTCAATTAGCATAACAATGA+AGG | + | chr5.1:75869790-75869809 | None:intergenic | 25.0% |
| ! | TTTATAGAATCTAATCACAG+AGG | + | chr5.1:75869448-75869467 | None:intergenic | 25.0% |
| !! | AAGTAACCTTTCCATATTTT+CGG | + | chr5.1:75868393-75868412 | None:intergenic | 25.0% |
| !! | CATTATTTGAAGATCAGTTT+TGG | + | chr5.1:75866133-75866152 | None:intergenic | 25.0% |
| !! | CATTTTTCATAGTCATGTTT+AGG | - | chr5.1:75867945-75867964 | MS.gene63886:intron | 25.0% |
| !! | TATCAAATTTGCCTTTTGAT+AGG | + | chr5.1:75870009-75870028 | None:intergenic | 25.0% |
| !! | TATCTTCTTTTACAAGACAA+TGG | - | chr5.1:75866042-75866061 | MS.gene63886:intron | 25.0% |
| !! | TTCATTGATTATTGACAAAG+GGG | - | chr5.1:75867896-75867915 | MS.gene63886:intron | 25.0% |
| !! | TTCCCAGTTTTCTTATATTT+TGG | + | chr5.1:75868346-75868365 | None:intergenic | 25.0% |
| !!! | ATAATCTTTCTAGCATTTTC+AGG | + | chr5.1:75866018-75866037 | None:intergenic | 25.0% |
| !!! | ATATGGTATTGGTTCAAAAT+TGG | - | chr5.1:75870127-75870146 | MS.gene63886:CDS | 25.0% |
| !!! | ATGTTTAGGTTTTATGATGT+TGG | - | chr5.1:75867959-75867978 | MS.gene63886:intron | 25.0% |
| !!! | ATTTGTTATGGTTGATTTAC+AGG | - | chr5.1:75866949-75866968 | MS.gene63886:intron | 25.0% |
| !!! | CTCTAGTTTGAAATTTGTTA+TGG | - | chr5.1:75866937-75866956 | MS.gene63886:intron | 25.0% |
| !!! | GATATTTTTGACCGAAAATA+TGG | - | chr5.1:75868379-75868398 | MS.gene63886:intron | 25.0% |
| !!! | TATGGTATTGGTTCAAAATT+GGG | - | chr5.1:75870128-75870147 | MS.gene63886:CDS | 25.0% |
| !!! | TTTATGATGTTAGCTTGTTT+TGG | - | chr5.1:75868028-75868047 | MS.gene63886:intron | 25.0% |
| AAAATCATTCTCACAGTTTC+AGG | + | chr5.1:75867311-75867330 | None:intergenic | 30.0% | |
| AAATAATGACAGATCTTGAG+TGG | + | chr5.1:75866516-75866535 | None:intergenic | 30.0% | |
| AAATACGACCAAGTTATAGA+AGG | - | chr5.1:75868276-75868295 | MS.gene63886:intron | 30.0% | |
| AAATCAATGTAGTCAGGATT+GGG | + | chr5.1:75868787-75868806 | None:intergenic | 30.0% | |
| AATAATGACAGATCTTGAGT+GGG | + | chr5.1:75866515-75866534 | None:intergenic | 30.0% | |
| AATGCAAATCCTGAATTTAC+GGG | - | chr5.1:75866294-75866313 | MS.gene63886:intron | 30.0% | |
| AATTGTTCTACATTGTGAAC+CGG | + | chr5.1:75869416-75869435 | None:intergenic | 30.0% | |
| AATTTCACTAGAGGCTAAAA+TGG | - | chr5.1:75870058-75870077 | MS.gene63886:CDS | 30.0% | |
| AGTAGGCACATATCTATATA+TGG | - | chr5.1:75867679-75867698 | MS.gene63886:intron | 30.0% | |
| ATAGTATTCGGCTAATTGAT+AGG | - | chr5.1:75866859-75866878 | MS.gene63886:intron | 30.0% | |
| ATTGTTCTGCAATATGGTAT+TGG | - | chr5.1:75870116-75870135 | MS.gene63886:CDS | 30.0% | |
| ATTTACGGGAATGAATTACA+TGG | - | chr5.1:75866308-75866327 | MS.gene63886:intron | 30.0% | |
| ATTTATGTTTCCATGAGTAC+TGG | - | chr5.1:75868987-75869006 | MS.gene63886:CDS | 30.0% | |
| ATTTCAGTAAAGGTTACTGT+AGG | - | chr5.1:75866532-75866551 | MS.gene63886:CDS | 30.0% | |
| CAAAAAAACAGAGAAAACAG+AGG | + | chr5.1:75868660-75868679 | None:intergenic | 30.0% | |
| CAAATGGAGATGATAGAAAA+TGG | - | chr5.1:75868862-75868881 | MS.gene63886:intron | 30.0% | |
| CAAGCATAAATTATGGACAA+TGG | + | chr5.1:75868151-75868170 | None:intergenic | 30.0% | |
| CAATGCAAATCCTGAATTTA+CGG | - | chr5.1:75866293-75866312 | MS.gene63886:intron | 30.0% | |
| CTACATTAAAACATACCATC+TGG | + | chr5.1:75869726-75869745 | None:intergenic | 30.0% | |
| CTTGTAAAGTTATGGTATCT+TGG | - | chr5.1:75868167-75868186 | MS.gene63886:intron | 30.0% | |
| GAATAAATGGAGAAAGGAAA+CGG | + | chr5.1:75868448-75868467 | None:intergenic | 30.0% | |
| GAATCTATTGTTCTGCAATA+TGG | - | chr5.1:75870110-75870129 | MS.gene63886:CDS | 30.0% | |
| GCAAAAAACAGAACAAACAT+AGG | + | chr5.1:75868630-75868649 | None:intergenic | 30.0% | |
| GCTCCAAAATACATTCAAAA+GGG | - | chr5.1:75867008-75867027 | MS.gene63886:intron | 30.0% | |
| GCTGTTAATGATTACAACAA+TGG | - | chr5.1:75866417-75866436 | MS.gene63886:intron | 30.0% | |
| GTTACTTGTATAGGAGAAAT+AGG | - | chr5.1:75868406-75868425 | MS.gene63886:intron | 30.0% | |
| TAAATTATGGACAATGGAAC+AGG | + | chr5.1:75868145-75868164 | None:intergenic | 30.0% | |
| TAATTCATTCCCGTAAATTC+AGG | + | chr5.1:75866306-75866325 | None:intergenic | 30.0% | |
| TATGATGAATGCTTATTCCT+CGG | - | chr5.1:75867596-75867615 | MS.gene63886:intron | 30.0% | |
| TATGGAAAGGTTACTTGTAT+AGG | - | chr5.1:75868397-75868416 | MS.gene63886:intron | 30.0% | |
| TGCTCCAAAATACATTCAAA+AGG | - | chr5.1:75867007-75867026 | MS.gene63886:intron | 30.0% | |
| TTAACTTCGGTATGTATTTC+AGG | - | chr5.1:75869272-75869291 | MS.gene63886:CDS | 30.0% | |
| TTATACAAGTTTGAAGGGTA+TGG | - | chr5.1:75869053-75869072 | MS.gene63886:CDS | 30.0% | |
| TTATTCAACGCATGATTTAG+AGG | + | chr5.1:75869855-75869874 | None:intergenic | 30.0% | |
| TTGAGAGAATAAATGGAGAA+AGG | + | chr5.1:75868454-75868473 | None:intergenic | 30.0% | |
| TTTGTTCACAATTTCACTAG+AGG | - | chr5.1:75870049-75870068 | MS.gene63886:CDS | 30.0% | |
| ! | AACAAGCTTTTGAATTGCAA+AGG | - | chr5.1:75869616-75869635 | MS.gene63886:CDS | 30.0% |
| ! | AACTATAGTAATGGAGCAAA+TGG | - | chr5.1:75868846-75868865 | MS.gene63886:intron | 30.0% |
| ! | CAGTTTTGCATTGAAAAGTA+AGG | - | chr5.1:75868222-75868241 | MS.gene63886:intron | 30.0% |
| ! | GGTAACTGTAGATATTTTCA+TGG | - | chr5.1:75866561-75866580 | MS.gene63886:intron | 30.0% |
| ! | TAACTTGGTCGTATTTCTAT+AGG | + | chr5.1:75868272-75868291 | None:intergenic | 30.0% |
| ! | TCTCCCTTTTGAATGTATTT+TGG | + | chr5.1:75867014-75867033 | None:intergenic | 30.0% |
| ! | TGAAACTGTGAGAATGATTT+TGG | - | chr5.1:75867310-75867329 | MS.gene63886:intron | 30.0% |
| ! | TTTGAAGTTGTACACATAGT+AGG | - | chr5.1:75867662-75867681 | MS.gene63886:intron | 30.0% |
| ! | TTTTCCATTGGAAATGCAAA+TGG | + | chr5.1:75870394-75870413 | None:intergenic | 30.0% |
| ! | TTTTGACCGAAAATATGGAA+AGG | - | chr5.1:75868384-75868403 | MS.gene63886:intron | 30.0% |
| !! | AATCCTGACTACATTGATTT+GGG | - | chr5.1:75868787-75868806 | MS.gene63886:intron | 30.0% |
| !! | CCTAATTGTTTTTCTTCTTC+CGG | - | chr5.1:75869394-75869413 | MS.gene63886:CDS | 30.0% |
| !!! | ACTAAGTTTTAGCTCTCTTA+CGG | + | chr5.1:75867767-75867786 | None:intergenic | 30.0% |
| AAACCCAAAATGAGGTGAAA+TGG | + | chr5.1:75869682-75869701 | None:intergenic | 35.0% | |
| AAATGAGGTGAAATGGGAAA+AGG | + | chr5.1:75869675-75869694 | None:intergenic | 35.0% | |
| AAATGGCTTAAACCTTGTTG+AGG | + | chr5.1:75866201-75866220 | None:intergenic | 35.0% | |
| AAATTCAGGATTTGCATTGC+TGG | + | chr5.1:75866292-75866311 | None:intergenic | 35.0% | |
| AACCCAAAATGAGGTGAAAT+GGG | + | chr5.1:75869681-75869700 | None:intergenic | 35.0% | |
| AACTGGGAAGTTAGAATAAG+AGG | - | chr5.1:75868357-75868376 | MS.gene63886:intron | 35.0% | |
| AATGGCTTAAACCTTGTTGA+GGG | + | chr5.1:75866200-75866219 | None:intergenic | 35.0% | |
| ACTGTCTACTTAGAGATCTA+TGG | + | chr5.1:75869581-75869600 | None:intergenic | 35.0% | |
| AGAAGACAAAGGTTGTTGAA+AGG | - | chr5.1:75867390-75867409 | MS.gene63886:intron | 35.0% | |
| AGACAGTTCCTTCTATAACT+TGG | + | chr5.1:75868287-75868306 | None:intergenic | 35.0% | |
| AGAGGATCTTAACTCGAAAT+AGG | - | chr5.1:75868885-75868904 | MS.gene63886:intron | 35.0% | |
| AGAGTTGAGAGAAAAAACAG+AGG | + | chr5.1:75868690-75868709 | None:intergenic | 35.0% | |
| ATAACTGTATCCAGTACTCA+TGG | + | chr5.1:75869000-75869019 | None:intergenic | 35.0% | |
| ATAGGAGAAATAGGTGAGTT+AGG | - | chr5.1:75868415-75868434 | MS.gene63886:intron | 35.0% | |
| ATCTCTAAGTAGACAGTTGA+TGG | - | chr5.1:75869584-75869603 | MS.gene63886:CDS | 35.0% | |
| ATGCAGTTCCAAGAAGTTAT+GGG | - | chr5.1:75869553-75869572 | MS.gene63886:CDS | 35.0% | |
| CAAATCAATGTAGTCAGGAT+TGG | + | chr5.1:75868788-75868807 | None:intergenic | 35.0% | |
| CAACTAATTTCAGTGAATGG+TGG | - | chr5.1:75870210-75870229 | MS.gene63886:CDS | 35.0% | |
| CATTTGGATCATGTGAATAC+CGG | - | chr5.1:75866381-75866400 | MS.gene63886:intron | 35.0% | |
| CCGGAAGAAGAAAAACAATT+AGG | + | chr5.1:75869397-75869416 | None:intergenic | 35.0% | |
| CTGCAACTAATTTCAGTGAA+TGG | - | chr5.1:75870207-75870226 | MS.gene63886:CDS | 35.0% | |
| GAGGATCTTAACTCGAAATA+GGG | - | chr5.1:75868886-75868905 | MS.gene63886:intron | 35.0% | |
| TAATACTAGCAATGAGGATC+CGG | - | chr5.1:75866629-75866648 | MS.gene63886:intron | 35.0% | |
| TATGCAGTTCCAAGAAGTTA+TGG | - | chr5.1:75869552-75869571 | MS.gene63886:CDS | 35.0% | |
| TCAAGTTCCATCTTCCTATT+GGG | - | chr5.1:75866254-75866273 | MS.gene63886:intron | 35.0% | |
| TCACTGAAATTAGTTGCAGA+TGG | + | chr5.1:75870206-75870225 | None:intergenic | 35.0% | |
| TCGATATTTGCAAAGTGATG+TGG | + | chr5.1:75869334-75869353 | None:intergenic | 35.0% | |
| TGCAGATCATTTCAATTTCC+AGG | - | chr5.1:75869821-75869840 | MS.gene63886:CDS | 35.0% | |
| TTCAAAAAATGGAGTGCAAG+AGG | + | chr5.1:75867648-75867667 | None:intergenic | 35.0% | |
| TTGGGTATGTTGAAGATGTT+AGG | - | chr5.1:75867237-75867256 | MS.gene63886:intron | 35.0% | |
| TTGGTGGAAAAGCTACAAAA+AGG | - | chr5.1:75866463-75866482 | MS.gene63886:intron | 35.0% | |
| ! | CAATCCTGACTACATTGATT+TGG | - | chr5.1:75868786-75868805 | MS.gene63886:intron | 35.0% |
| ! | GTAATTTTATGCAGCAACGA+AGG | - | chr5.1:75870349-75870368 | MS.gene63886:CDS | 35.0% |
| ! | GTGAGAATGATTTTGGACAA+GGG | - | chr5.1:75867317-75867336 | MS.gene63886:intron | 35.0% |
| ! | TGTGAGAATGATTTTGGACA+AGG | - | chr5.1:75867316-75867335 | MS.gene63886:intron | 35.0% |
| ! | TTCAAGTTCCATCTTCCTAT+TGG | - | chr5.1:75866253-75866272 | MS.gene63886:intron | 35.0% |
| ! | TTCCCATTTCACCTCATTTT+GGG | - | chr5.1:75869676-75869695 | MS.gene63886:CDS | 35.0% |
| ! | TTGCCTTTTGATAGGAAGAA+CGG | + | chr5.1:75870001-75870020 | None:intergenic | 35.0% |
| ! | TTTCCCATTTCACCTCATTT+TGG | - | chr5.1:75869675-75869694 | MS.gene63886:CDS | 35.0% |
| ! | TTTTTCTTTGCAGCGCATTT+GGG | - | chr5.1:75867219-75867238 | MS.gene63886:intron | 35.0% |
| !! | ACAAGGTTTAAGCCATTTTC+CGG | - | chr5.1:75866203-75866222 | MS.gene63886:intron | 35.0% |
| !! | GATGTTTCTGCTGTCAATTT+TGG | - | chr5.1:75866444-75866463 | MS.gene63886:intron | 35.0% |
| !! | TGAGTACTGGATACAGTTAT+TGG | - | chr5.1:75869000-75869019 | MS.gene63886:CDS | 35.0% |
| !!! | TTTTTTCTTTGCAGCGCATT+TGG | - | chr5.1:75867218-75867237 | MS.gene63886:intron | 35.0% |
| AACAGAGGCAACTTCAAGAA+TGG | + | chr5.1:75867849-75867868 | None:intergenic | 40.0% | |
| AATCACAGAGGAAACCAGTA+AGG | + | chr5.1:75869481-75869500 | None:intergenic | 40.0% | |
| ACAAACGCAATTGCTGAGTT+TGG | - | chr5.1:75866353-75866372 | MS.gene63886:intron | 40.0% | |
| ACAGAGGCAACTTCAAGAAT+GGG | + | chr5.1:75867848-75867867 | None:intergenic | 40.0% | |
| ACGTAACACGATAGTAGGAT+TGG | + | chr5.1:75868725-75868744 | None:intergenic | 40.0% | |
| ACTTCGGTATGTATTTCAGG+AGG | - | chr5.1:75869275-75869294 | MS.gene63886:CDS | 40.0% | |
| AGACAATGGCGAACAAGAAA+TGG | - | chr5.1:75866056-75866075 | MS.gene63886:intron | 40.0% | |
| AGCAAAAACGAACCTGAGTA+AGG | + | chr5.1:75868600-75868619 | None:intergenic | 40.0% | |
| AGTAAAGGTTACTGTAGGCA+TGG | - | chr5.1:75866537-75866556 | MS.gene63886:CDS | 40.0% | |
| ATATGAGAGAAACTGTCGTG+AGG | + | chr5.1:75866594-75866613 | None:intergenic | 40.0% | |
| ATTGAGAAAGCCAATCACAG+AGG | + | chr5.1:75869493-75869512 | None:intergenic | 40.0% | |
| ATTGGGATCCTAAGTAGGAT+CGG | + | chr5.1:75868770-75868789 | None:intergenic | 40.0% | |
| CAGTCCATTTGCATTTCCAA+TGG | - | chr5.1:75870387-75870406 | MS.gene63886:CDS | 40.0% | |
| CTATGGTTCCCATAACTTCT+TGG | + | chr5.1:75869564-75869583 | None:intergenic | 40.0% | |
| CTGAAATTAGTTGCAGATGG+CGG | + | chr5.1:75870203-75870222 | None:intergenic | 40.0% | |
| GACAGTTTCTCTCATATGCA+TGG | - | chr5.1:75866597-75866616 | MS.gene63886:intron | 40.0% | |
| GATGGAACTTGAAAGTTCAG+CGG | + | chr5.1:75866246-75866265 | None:intergenic | 40.0% | |
| GCCAGCAGAAAAGAATGTTT+GGG | - | chr5.1:75867267-75867286 | MS.gene63886:intron | 40.0% | |
| GCTGAGTTTGGAGAATCATT+TGG | - | chr5.1:75866365-75866384 | MS.gene63886:intron | 40.0% | |
| GGAAATCCTCATTATGTTCG+TGG | - | chr5.1:75867338-75867357 | MS.gene63886:intron | 40.0% | |
| GGAATCAGTGTCAGTATTCT+TGG | + | chr5.1:75869883-75869902 | None:intergenic | 40.0% | |
| GGAGATGATAGAAAATGGAG+AGG | - | chr5.1:75868867-75868886 | MS.gene63886:intron | 40.0% | |
| GGTACGAGATACATGTTCTA+TGG | + | chr5.1:75868118-75868137 | None:intergenic | 40.0% | |
| TAGCAATCGTACTGCATGTA+AGG | + | chr5.1:75870248-75870267 | None:intergenic | 40.0% | |
| TATCTATATATGGCACGCGT+TGG | - | chr5.1:75867689-75867708 | MS.gene63886:intron | 40.0% | |
| TCATTTCAATTTCCAGGCTG+CGG | - | chr5.1:75869827-75869846 | MS.gene63886:CDS | 40.0% | |
| TCCATAGGAAACCCAAAATG+AGG | + | chr5.1:75869690-75869709 | None:intergenic | 40.0% | |
| TGCCAGCAGAAAAGAATGTT+TGG | - | chr5.1:75867266-75867285 | MS.gene63886:intron | 40.0% | |
| TGTGCTTGTGAAACCTTACA+GGG | - | chr5.1:75867367-75867386 | MS.gene63886:intron | 40.0% | |
| TTTGCATTGCTGGTAGATTG+TGG | + | chr5.1:75866282-75866301 | None:intergenic | 40.0% | |
| ! | AACACGATAGTAGGATTGGT+AGG | + | chr5.1:75868721-75868740 | None:intergenic | 40.0% |
| ! | AACATTCTTTTCTGCTGGCA+TGG | + | chr5.1:75867266-75867285 | None:intergenic | 40.0% |
| ! | ACCCAAACATTCTTTTCTGC+TGG | + | chr5.1:75867271-75867290 | None:intergenic | 40.0% |
| ! | CAATTTTCCTTTGGTGAGCT+AGG | - | chr5.1:75869966-75869985 | MS.gene63886:CDS | 40.0% |
| ! | CTCTGTTTCTCGTGATGAAT+CGG | - | chr5.1:75867862-75867881 | MS.gene63886:intron | 40.0% |
| ! | GGCTGTATAGTGCTGTTAAA+TGG | - | chr5.1:75870079-75870098 | MS.gene63886:CDS | 40.0% |
| ! | GTTTCTGCTGTCAATTTTGG+TGG | - | chr5.1:75866447-75866466 | MS.gene63886:intron | 40.0% |
| !! | AAAAAGGTACTGCAAGCACA+TGG | - | chr5.1:75866768-75866787 | MS.gene63886:CDS | 40.0% |
| !! | AATACTGACACTGATTCCTC+TGG | - | chr5.1:75869885-75869904 | MS.gene63886:CDS | 40.0% |
| !! | ATTCCTCGGTGTTTATTCTC+TGG | - | chr5.1:75867610-75867629 | MS.gene63886:intron | 40.0% |
| !! | TGGAAATGCAAATGGACTGT+CGG | + | chr5.1:75870386-75870405 | None:intergenic | 40.0% |
| !! | TTACTGGTTTCCTCTGTGAT+TGG | - | chr5.1:75869480-75869499 | MS.gene63886:intron | 40.0% |
| !!! | ACCTCATTTTGGGTTTCCTA+TGG | - | chr5.1:75869686-75869705 | MS.gene63886:CDS | 40.0% |
| !!! | GAGCTTTTAAAGCAGAGAAG+AGG | - | chr5.1:75866696-75866715 | MS.gene63886:CDS | 40.0% |
| AAAGGTTACTGTAGGCATGG+AGG | - | chr5.1:75866540-75866559 | MS.gene63886:intron | 45.0% | |
| AATGGAGAAAGGAAACGGAG+AGG | + | chr5.1:75868443-75868462 | None:intergenic | 45.0% | |
| ACCTTACAGGGAGAAGACAA+AGG | - | chr5.1:75867379-75867398 | MS.gene63886:intron | 45.0% | |
| ACCTTTGTCTTCTCCCTGTA+AGG | + | chr5.1:75867383-75867402 | None:intergenic | 45.0% | |
| ACGGAGATAATGCCGGAAAA+TGG | + | chr5.1:75866218-75866237 | None:intergenic | 45.0% | |
| ATGGCGAACAAGAAATGGCT+AGG | - | chr5.1:75866061-75866080 | MS.gene63886:intron | 45.0% | |
| CATCGGTGAAGTCGTCTTTA+AGG | - | chr5.1:75866107-75866126 | MS.gene63886:intron | 45.0% | |
| CCTAATGTCAACCCTCAACA+AGG | - | chr5.1:75866186-75866205 | MS.gene63886:intron | 45.0% | |
| CCTTGTTGAGGGTTGACATT+AGG | + | chr5.1:75866189-75866208 | None:intergenic | 45.0% | |
| CGAACAAGAAATGGCTAGGT+TGG | - | chr5.1:75866065-75866084 | MS.gene63886:intron | 45.0% | |
| CGATTCATCACGAGAAACAG+AGG | + | chr5.1:75867864-75867883 | None:intergenic | 45.0% | |
| CTATAAGCCTAGCTCACCAA+AGG | + | chr5.1:75869976-75869995 | None:intergenic | 45.0% | |
| GAACCAGAGAATAAACACCG+AGG | + | chr5.1:75867616-75867635 | None:intergenic | 45.0% | |
| GAGCCCAAATCAATGTAGTC+AGG | + | chr5.1:75868793-75868812 | None:intergenic | 45.0% | |
| GAGGAACGTAACACGATAGT+AGG | + | chr5.1:75868730-75868749 | None:intergenic | 45.0% | |
| GCACCGTTCTTCCTATCAAA+AGG | - | chr5.1:75869995-75870014 | MS.gene63886:CDS | 45.0% | |
| GCCATTGTAGTCAGGATTGA+GGG | - | chr5.1:75868519-75868538 | MS.gene63886:intron | 45.0% | |
| GGTAGATTGTGGATCCCAAT+AGG | + | chr5.1:75866271-75866290 | None:intergenic | 45.0% | |
| GTGAAATGGGAAAAGGTCGT+CGG | + | chr5.1:75869668-75869687 | None:intergenic | 45.0% | |
| GTGTGCTTGTGAAACCTTAC+AGG | - | chr5.1:75867366-75867385 | MS.gene63886:intron | 45.0% | |
| TATGGACAATGGAACAGGTG+CGG | + | chr5.1:75868140-75868159 | None:intergenic | 45.0% | |
| TCAGGATTGGGATCCTAAGT+AGG | + | chr5.1:75868775-75868794 | None:intergenic | 45.0% | |
| TCGCGCGACTCAATAGTATT+CGG | - | chr5.1:75866847-75866866 | MS.gene63886:intron | 45.0% | |
| TCTTGTCCTGACCACATCAT+CGG | - | chr5.1:75866090-75866109 | MS.gene63886:intron | 45.0% | |
| TGAAAGTTCAGCGGTGAAGA+CGG | + | chr5.1:75866237-75866256 | None:intergenic | 45.0% | |
| TGAAATGGGAAAAGGTCGTC+GGG | + | chr5.1:75869667-75869686 | None:intergenic | 45.0% | |
| TGACAGCACTTTCACTGAAG+AGG | - | chr5.1:75867085-75867104 | MS.gene63886:intron | 45.0% | |
| TGTATACCTATTCCCTCCAG+AGG | + | chr5.1:75869904-75869923 | None:intergenic | 45.0% | |
| TGTGGATCCCAATAGGAAGA+TGG | + | chr5.1:75866264-75866283 | None:intergenic | 45.0% | |
| TGTTGAGGGTTGACATTAGG+TGG | + | chr5.1:75866186-75866205 | None:intergenic | 45.0% | |
| ! | CAGAGTGCTCCATTCTATCA+TGG | + | chr5.1:75869303-75869322 | None:intergenic | 45.0% |
| ! | GTTTGAAGGGTATGGCATCT+TGG | - | chr5.1:75869061-75869080 | MS.gene63886:CDS | 45.0% |
| ! | TGATTTGGGCCATTGTAGTC+AGG | - | chr5.1:75868511-75868530 | MS.gene63886:intron | 45.0% |
| ! | TGGTTGATTTACAGGCCTCA+CGG | - | chr5.1:75866957-75866976 | MS.gene63886:intron | 45.0% |
| !! | CAGGAGGTACCATGATAGAA+TGG | - | chr5.1:75869291-75869310 | MS.gene63886:CDS | 45.0% |
| !! | GAAATGCAAATGGACTGTCG+GGG | + | chr5.1:75870384-75870403 | None:intergenic | 45.0% |
| !! | GGAAATGCAAATGGACTGTC+GGG | + | chr5.1:75870385-75870404 | None:intergenic | 45.0% |
| !! | TTGACATTAGGTGGCGGAAT+TGG | + | chr5.1:75866177-75866196 | None:intergenic | 45.0% |
| AACAGCAAGACCTCGAGTTC+CGG | + | chr5.1:75866403-75866422 | None:intergenic | 50.0% | |
| ACCTGAGTAAGGTCGAAGCA+CGG | + | chr5.1:75868589-75868608 | None:intergenic | 50.0% | |
| ACTTCACCGATGATGTGGTC+AGG | + | chr5.1:75866099-75866118 | None:intergenic | 50.0% | |
| AGACGACTTCACCGATGATG+TGG | + | chr5.1:75866104-75866123 | None:intergenic | 50.0% | |
| AGGATCCGGTGATTTCACCA+GGG | - | chr5.1:75866643-75866662 | MS.gene63886:intron | 50.0% | |
| AGTGACCCTGGTGAAATCAC+CGG | + | chr5.1:75866651-75866670 | None:intergenic | 50.0% | |
| ATGGACAATGGAACAGGTGC+GGG | + | chr5.1:75868139-75868158 | None:intergenic | 50.0% | |
| CATGTGAATACCGGAACTCG+AGG | - | chr5.1:75866390-75866409 | MS.gene63886:intron | 50.0% | |
| CGAGAGCCACGAACATAATG+AGG | + | chr5.1:75867347-75867366 | None:intergenic | 50.0% | |
| GATGCGTTGAGAGTTCCAGA+TGG | - | chr5.1:75869708-75869727 | MS.gene63886:CDS | 50.0% | |
| GCCCTCAATCCTGACTACAA+TGG | + | chr5.1:75868523-75868542 | None:intergenic | 50.0% | |
| GGAACTCTCAACGCATCCAT+AGG | + | chr5.1:75869705-75869724 | None:intergenic | 50.0% | |
| GGCAGCGAAGCAATTGACAT+TGG | + | chr5.1:75866726-75866745 | None:intergenic | 50.0% | |
| GGCCATTGTAGTCAGGATTG+AGG | - | chr5.1:75868518-75868537 | MS.gene63886:intron | 50.0% | |
| GGTGAAGACGGAGATAATGC+CGG | + | chr5.1:75866225-75866244 | None:intergenic | 50.0% | |
| TCTATCTGAGCTAGTGACCC+TGG | + | chr5.1:75866663-75866682 | None:intergenic | 50.0% | |
| TGAGGGTTGACATTAGGTGG+CGG | + | chr5.1:75866183-75866202 | None:intergenic | 50.0% | |
| TTAACTGAGAGCCAGCGACA+TGG | - | chr5.1:75866795-75866814 | MS.gene63886:CDS | 50.0% | |
| TTGTAGTCAGGATTGAGGGC+TGG | - | chr5.1:75868523-75868542 | MS.gene63886:intron | 50.0% | |
| ! | CTGATTCCTCTGGAGGGAAT+AGG | - | chr5.1:75869895-75869914 | MS.gene63886:CDS | 50.0% |
| !! | ACTGACACTGATTCCTCTGG+AGG | - | chr5.1:75869888-75869907 | MS.gene63886:CDS | 50.0% |
| !! | AGGATTGAGGGCTGGTTTGT+AGG | - | chr5.1:75868531-75868550 | MS.gene63886:intron | 50.0% |
| !! | CTGACACTGATTCCTCTGGA+GGG | - | chr5.1:75869889-75869908 | MS.gene63886:CDS | 50.0% |
| !! | TCAGTGAAAGTGCTGTCAGC+TGG | + | chr5.1:75867083-75867102 | None:intergenic | 50.0% |
| ACCACTGCATGTTGTCCGTG+AGG | + | chr5.1:75866975-75866994 | None:intergenic | 55.0% | |
| ACCGTGCTTCGACCTTACTC+AGG | - | chr5.1:75868585-75868604 | MS.gene63886:intron | 55.0% | |
| AGCCAGACTTACCATGTCGC+TGG | + | chr5.1:75866809-75866828 | None:intergenic | 55.0% | |
| AGCCAGCGACATGGTAAGTC+TGG | - | chr5.1:75866804-75866823 | MS.gene63886:CDS | 55.0% | |
| CGAGCTGACCGATCCTACTT+AGG | - | chr5.1:75868759-75868778 | MS.gene63886:intron | 55.0% | |
| CGGACAACATGCAGTGGTTC+TGG | - | chr5.1:75866977-75866996 | MS.gene63886:intron | 55.0% | |
| GAGGATCCGGTGATTTCACC+AGG | - | chr5.1:75866642-75866661 | MS.gene63886:intron | 55.0% | |
| GATTTAGAGGTTCCGCAGCC+TGG | + | chr5.1:75869842-75869861 | None:intergenic | 55.0% | |
| GGTCAGCTCGTGAAAACACG+AGG | + | chr5.1:75868749-75868768 | None:intergenic | 55.0% | |
| GTAAGGTCGAAGCACGGTTG+AGG | + | chr5.1:75868583-75868602 | None:intergenic | 55.0% | |
| GTCAATTGCTTCGCTGCCGA+TGG | - | chr5.1:75866728-75866747 | MS.gene63886:CDS | 55.0% | |
| TCGTACGATCCTACGTCCCA+TGG | - | chr5.1:75868555-75868574 | MS.gene63886:intron | 55.0% | |
| ! | AAGCACGGTTGAGGTGCCAT+GGG | + | chr5.1:75868574-75868593 | None:intergenic | 55.0% |
| !! | AGGTGGCGGAATTGGCATCA+TGG | + | chr5.1:75866169-75866188 | None:intergenic | 55.0% |
| GCCTCACGGACAACATGCAG+TGG | - | chr5.1:75866971-75866990 | MS.gene63886:intron | 60.0% | |
| ! | GAAGCACGGTTGAGGTGCCA+TGG | + | chr5.1:75868575-75868594 | None:intergenic | 60.0% |
| ! | GTTGAGGTGCCATGGGACGT+AGG | + | chr5.1:75868567-75868586 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 75865961 | 75870423 | 75865961 | ID=MS.gene63886 |
| chr5.1 | mRNA | 75865961 | 75870423 | 75865961 | ID=MS.gene63886.t1;Parent=MS.gene63886 |
| chr5.1 | exon | 75869504 | 75870423 | 75869504 | ID=MS.gene63886.t1.exon1;Parent=MS.gene63886.t1 |
| chr5.1 | CDS | 75869504 | 75870423 | 75869504 | ID=cds.MS.gene63886.t1;Parent=MS.gene63886.t1 |
| chr5.1 | exon | 75869258 | 75869413 | 75869258 | ID=MS.gene63886.t1.exon2;Parent=MS.gene63886.t1 |
| chr5.1 | CDS | 75869258 | 75869413 | 75869258 | ID=cds.MS.gene63886.t1;Parent=MS.gene63886.t1 |
| chr5.1 | exon | 75868973 | 75869152 | 75868973 | ID=MS.gene63886.t1.exon3;Parent=MS.gene63886.t1 |
| chr5.1 | CDS | 75868973 | 75869152 | 75868973 | ID=cds.MS.gene63886.t1;Parent=MS.gene63886.t1 |
| chr5.1 | exon | 75867014 | 75867090 | 75867014 | ID=MS.gene63886.t1.exon4;Parent=MS.gene63886.t1 |
| chr5.1 | CDS | 75867014 | 75867090 | 75867014 | ID=cds.MS.gene63886.t1;Parent=MS.gene63886.t1 |
| chr5.1 | exon | 75866655 | 75866825 | 75866655 | ID=MS.gene63886.t1.exon5;Parent=MS.gene63886.t1 |
| chr5.1 | CDS | 75866655 | 75866825 | 75866655 | ID=cds.MS.gene63886.t1;Parent=MS.gene63886.t1 |
| chr5.1 | exon | 75866468 | 75866558 | 75866468 | ID=MS.gene63886.t1.exon6;Parent=MS.gene63886.t1 |
| chr5.1 | CDS | 75866468 | 75866558 | 75866468 | ID=cds.MS.gene63886.t1;Parent=MS.gene63886.t1 |
| chr5.1 | exon | 75865961 | 75866021 | 75865961 | ID=MS.gene63886.t1.exon7;Parent=MS.gene63886.t1 |
| chr5.1 | CDS | 75865961 | 75866021 | 75865961 | ID=cds.MS.gene63886.t1;Parent=MS.gene63886.t1 |
| Gene Sequence |
| Protein sequence |
