Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64182.t1 | XP_003615541.2 | 72.1 | 183 | 50 | 1 | 9 | 190 | 235 | 417 | 5.00E-65 | 257.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64182.t1 | Q8GY84 | 51.4 | 185 | 86 | 1 | 11 | 191 | 247 | 431 | 2.8e-40 | 166.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64182.t1 | G7KE08 | 72.1 | 183 | 50 | 1 | 9 | 190 | 235 | 417 | 3.6e-65 | 257.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene64182 | 0.822126 | 2.80E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene64182 | 0.824178 | 9.29E-54 | -1.69E-46 |
| MS.gene049669 | MS.gene64182 | 0.841625 | 4.24E-58 | -1.69E-46 |
| MS.gene050226 | MS.gene64182 | 0.813145 | 2.97E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene64182 | 0.82141 | 4.10E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene64182 | 0.822939 | 1.81E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene64182 | 0.83441 | 3.05E-56 | -1.69E-46 |
| MS.gene050680 | MS.gene64182 | 0.814204 | 1.74E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene64182 | 0.808034 | 3.78E-50 | -1.69E-46 |
| MS.gene050820 | MS.gene64182 | 0.817665 | 2.93E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene64182 | 0.813664 | 2.28E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene64182 | 0.803563 | 3.28E-49 | -1.69E-46 |
| MS.gene051926 | MS.gene64182 | -0.80684 | 6.76E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene64182 | 0.821788 | 3.35E-53 | -1.69E-46 |
| MS.gene052190 | MS.gene64182 | 0.80938 | 1.95E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene64182 | 0.846035 | 2.80E-59 | -1.69E-46 |
| MS.gene052389 | MS.gene64182 | 0.812749 | 3.63E-51 | -1.69E-46 |
| MS.gene052586 | MS.gene64182 | 0.808363 | 3.21E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene64182 | 0.825716 | 4.03E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene64182 | 0.818049 | 2.40E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene64182 | -0.812787 | 3.56E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene64182 | 0.809459 | 1.87E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene64182 | 0.843201 | 1.62E-58 | -1.69E-46 |
| MS.gene054559 | MS.gene64182 | 0.827503 | 1.51E-54 | -1.69E-46 |
| MS.gene054610 | MS.gene64182 | 0.804839 | 1.78E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene64182 | 0.802481 | 5.50E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene64182 | 0.811628 | 6.37E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene64182 | 0.811276 | 7.59E-51 | -1.69E-46 |
| MS.gene055225 | MS.gene64182 | 0.801026 | 1.09E-48 | -1.69E-46 |
| MS.gene055356 | MS.gene64182 | 0.803802 | 2.93E-49 | -1.69E-46 |
| MS.gene055367 | MS.gene64182 | 0.840399 | 8.90E-58 | -1.69E-46 |
| MS.gene055701 | MS.gene64182 | 0.848167 | 7.28E-60 | -1.69E-46 |
| MS.gene055818 | MS.gene64182 | 0.805007 | 1.64E-49 | -1.69E-46 |
| MS.gene05595 | MS.gene64182 | 0.805411 | 1.35E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene64182 | 0.828363 | 9.37E-55 | -1.69E-46 |
| MS.gene056873 | MS.gene64182 | 0.813765 | 2.17E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene64182 | 0.841134 | 5.71E-58 | -1.69E-46 |
| MS.gene057156 | MS.gene64182 | -0.816495 | 5.37E-52 | -1.69E-46 |
| MS.gene05761 | MS.gene64182 | 0.812287 | 4.57E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene64182 | 0.80967 | 1.69E-50 | -1.69E-46 |
| MS.gene059161 | MS.gene64182 | 0.81735 | 3.45E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene64182 | 0.809256 | 2.07E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene64182 | 0.812254 | 4.65E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene64182 | 0.801229 | 9.94E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene64182 | 0.800291 | 1.54E-48 | -1.69E-46 |
| MS.gene060879 | MS.gene64182 | 0.818893 | 1.55E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene64182 | -0.830772 | 2.43E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64182.t1 | MTR_5g069330 | 72.928 | 181 | 48 | 1 | 11 | 190 | 233 | 413 | 2.62e-89 | 269 |
| MS.gene64182.t1 | MTR_5g069330 | 72.928 | 181 | 48 | 1 | 11 | 190 | 237 | 417 | 3.31e-89 | 269 |
| MS.gene64182.t1 | MTR_1g023070 | 78.571 | 168 | 34 | 2 | 22 | 187 | 1 | 168 | 2.11e-80 | 238 |
| MS.gene64182.t1 | MTR_1g023070 | 76.923 | 156 | 34 | 2 | 22 | 175 | 1 | 156 | 2.76e-72 | 219 |
| MS.gene64182.t1 | MTR_1g009617 | 74.483 | 145 | 35 | 2 | 47 | 189 | 167 | 311 | 4.24e-67 | 212 |
| MS.gene64182.t1 | MTR_6g082080 | 61.404 | 171 | 62 | 1 | 11 | 177 | 237 | 407 | 2.53e-55 | 182 |
| MS.gene64182.t1 | MTR_7g056830 | 55.959 | 193 | 77 | 2 | 11 | 195 | 237 | 429 | 6.33e-55 | 181 |
| MS.gene64182.t1 | MTR_1g022305 | 66.418 | 134 | 44 | 1 | 58 | 190 | 221 | 354 | 6.95e-53 | 177 |
| MS.gene64182.t1 | MTR_2g066050 | 33.333 | 216 | 134 | 3 | 11 | 216 | 280 | 495 | 6.45e-27 | 107 |
| MS.gene64182.t1 | MTR_3g071620 | 33.333 | 123 | 74 | 2 | 15 | 129 | 267 | 389 | 2.44e-14 | 71.6 |
| MS.gene64182.t1 | MTR_7g057250 | 26.136 | 176 | 122 | 2 | 11 | 178 | 462 | 637 | 1.77e-13 | 69.3 |
| MS.gene64182.t1 | MTR_2g055850 | 28.671 | 143 | 94 | 2 | 15 | 152 | 328 | 467 | 6.28e-13 | 67.8 |
| MS.gene64182.t1 | MTR_3g049990 | 27.684 | 177 | 113 | 4 | 40 | 208 | 412 | 581 | 1.85e-12 | 66.2 |
| MS.gene64182.t1 | MTR_4g112320 | 27.273 | 143 | 96 | 2 | 15 | 152 | 153 | 292 | 2.06e-11 | 63.2 |
| MS.gene64182.t1 | MTR_4g112340 | 27.273 | 143 | 96 | 2 | 15 | 152 | 335 | 474 | 4.40e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64182.t1 | AT5G60990 | 51.075 | 186 | 87 | 1 | 11 | 192 | 247 | 432 | 2.27e-52 | 175 |
| MS.gene64182.t1 | AT1G16280 | 37.870 | 169 | 98 | 2 | 10 | 171 | 285 | 453 | 2.44e-28 | 111 |
| MS.gene64182.t1 | AT5G26742 | 29.231 | 130 | 87 | 2 | 24 | 149 | 258 | 386 | 1.39e-13 | 69.7 |
| MS.gene64182.t1 | AT3G16840 | 27.419 | 186 | 122 | 5 | 3 | 176 | 482 | 666 | 5.17e-13 | 68.2 |
| MS.gene64182.t1 | AT3G16840 | 27.419 | 186 | 122 | 5 | 3 | 176 | 481 | 665 | 5.32e-13 | 68.2 |
| MS.gene64182.t1 | AT5G65900 | 28.667 | 150 | 98 | 3 | 14 | 157 | 389 | 535 | 1.14e-12 | 67.0 |
| MS.gene64182.t1 | AT5G05450 | 30.894 | 123 | 77 | 2 | 15 | 129 | 265 | 387 | 1.43e-12 | 66.6 |
| MS.gene64182.t1 | AT5G26742 | 32.292 | 96 | 61 | 1 | 58 | 149 | 384 | 479 | 6.99e-12 | 64.7 |
| MS.gene64182.t1 | AT5G26742 | 32.292 | 96 | 61 | 1 | 58 | 149 | 384 | 479 | 7.00e-12 | 64.7 |
Find 49 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATCGCCGCTCTTCATT+TGG | 0.204553 | 1.3:+1579571 | None:intergenic |
| TGACTCATATAACTAATAAT+TGG | 0.204926 | 1.3:+1579959 | None:intergenic |
| TGGTCTCAAGTCTTTCTTAA+AGG | 0.241215 | 1.3:-1577495 | None:intergenic |
| ACAAAGGAAATGACATTAAC+TGG | 0.304562 | 1.3:+1579598 | None:intergenic |
| GCCTTGAATGCGTTCAAGTC+TGG | 0.319856 | 1.3:-1579825 | MS.gene64182:CDS |
| GCTTTGATTCTTAAGAATCT+TGG | 0.333972 | 1.3:-1579995 | MS.gene64182:CDS |
| TGAATCGCCGCTCTTCATTT+GGG | 0.343585 | 1.3:+1579572 | None:intergenic |
| TTGTGGTAAAACGCTTCTTC+TGG | 0.351528 | 1.3:-1580017 | MS.gene64182:CDS |
| CGTTGTAGTACAACCTTCTC+TGG | 0.373023 | 1.3:+1577866 | None:intergenic |
| TTGTAGTGAGTTAGCTAGTA+AGG | 0.375561 | 1.3:-1579784 | MS.gene64182:CDS |
| CCCAGACTTGAACGCATTCA+AGG | 0.380609 | 1.3:+1579824 | None:intergenic |
| CATCTTACGTTTGGATCATA+AGG | 0.382752 | 1.3:+1579717 | None:intergenic |
| CAATTTCATGCTTCTTGCAC+AGG | 0.388174 | 1.3:-1580104 | MS.gene64182:CDS |
| TTCTCTGGAAAATATCCTTC+GGG | 0.405386 | 1.3:+1577881 | None:intergenic |
| GTATACCATTGATGTTCTTC+CGG | 0.409653 | 1.3:+1580048 | None:intergenic |
| GACTCATATAACTAATAATT+GGG | 0.432164 | 1.3:+1579960 | None:intergenic |
| AGATATTCCACCGGTAGATA+TGG | 0.440626 | 1.3:-1579757 | MS.gene64182:CDS |
| AATTATTAGTTATATGAGTC+AGG | 0.445349 | 1.3:-1579957 | MS.gene64182:intron |
| CTTCTCTGGAAAATATCCTT+CGG | 0.445786 | 1.3:+1577880 | None:intergenic |
| AAAAGCAAAACTTCCTCAAA+TGG | 0.452304 | 1.3:+1579391 | None:intergenic |
| AGGAAATGAAAGAATCTGAT+TGG | 0.454993 | 1.3:-1577907 | MS.gene64182:CDS |
| CCTTGAATGCGTTCAAGTCT+GGG | 0.463606 | 1.3:-1579824 | MS.gene64182:CDS |
| AGGATATTTAGTAGAAGAAG+AGG | 0.463912 | 1.3:-1579004 | MS.gene64182:intron |
| AGGAAATGAAAGAATCCGTT+TGG | 0.464624 | 1.3:-1579035 | MS.gene64182:CDS |
| ATTGTATACTGCACCATTTG+AGG | 0.495188 | 1.3:-1579404 | MS.gene64182:CDS |
| AGAATGATAGAGAAACATAT+AGG | 0.512066 | 1.3:-1579550 | MS.gene64182:intron |
| AAAGAATCCGTTTGGAAGAG+TGG | 0.531587 | 1.3:-1579027 | MS.gene64182:CDS |
| ATTATATGTACCGCGTGGGA+TGG | 0.545664 | 1.3:-1579627 | MS.gene64182:CDS |
| ATATCCTCCACTCTTCCAAA+CGG | 0.553619 | 1.3:+1579020 | None:intergenic |
| TGTAGTGAGTTAGCTAGTAA+GGG | 0.553873 | 1.3:-1579783 | MS.gene64182:CDS |
| CAGTTAATCACCATATCTAC+CGG | 0.568504 | 1.3:+1579747 | None:intergenic |
| AATGACCGGAAGAACATCAA+TGG | 0.568972 | 1.3:-1580053 | MS.gene64182:CDS |
| TTTGGAAGGGCGTGTTAGTG+AGG | 0.569331 | 1.3:-1579371 | MS.gene64182:CDS |
| TACATTCTCACTGAAATGAC+CGG | 0.572514 | 1.3:-1580067 | MS.gene64182:CDS |
| GAATCTGATTGGAAGCCCGA+AGG | 0.635733 | 1.3:-1577896 | MS.gene64182:CDS |
| ATTTCAGGTTCAGGCCACAG+TGG | 0.641385 | 1.3:-1577515 | MS.gene64182:intron |
| TCAAATGGTGCAGTATACAA+TGG | 0.641695 | 1.3:+1579406 | None:intergenic |
| CTTGAATGCGTTCAAGTCTG+GGG | 0.643789 | 1.3:-1579823 | MS.gene64182:CDS |
| CAGGATTATATGTACCGCGT+GGG | 0.652371 | 1.3:-1579631 | MS.gene64182:CDS |
| CTCTTCATTTGGGATCACAA+AGG | 0.656014 | 1.3:+1579582 | None:intergenic |
| TACTAGCTAACTCACTACAA+AGG | 0.661290 | 1.3:+1579787 | None:intergenic |
| GAATCCGTTTGGAAGAGTGG+AGG | 0.665590 | 1.3:-1579024 | MS.gene64182:CDS |
| TAAGGGACTAGATATTCCAC+CGG | 0.666766 | 1.3:-1579766 | MS.gene64182:CDS |
| TTAATCACCATATCTACCGG+TGG | 0.691482 | 1.3:+1579750 | None:intergenic |
| TTGTGATCCCAAATGAAGAG+CGG | 0.693482 | 1.3:-1579579 | MS.gene64182:CDS |
| ACAGGATTATATGTACCGCG+TGG | 0.696590 | 1.3:-1579632 | MS.gene64182:intron |
| ATGGTATACACTCAGCATTG+TGG | 0.710152 | 1.3:-1580034 | MS.gene64182:CDS |
| AGAAAGACTTGAGACCACTG+TGG | 0.769595 | 1.3:+1577501 | None:intergenic |
| CTGGAGCAATCCATCCCACG+CGG | 0.776648 | 1.3:+1579617 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATATAATAATTTTTTAT+AGG | - | chr1.3:1577751-1577770 | MS.gene64182:intron | 0.0% |
| !! | AATTGTGATTATATTATTAT+TGG | - | chr1.3:1578454-1578473 | MS.gene64182:intron | 10.0% |
| !! | TAGCAAATATTATATTAATA+TGG | - | chr1.3:1579018-1579037 | MS.gene64182:CDS | 10.0% |
| !!! | AAAATTTATATTTTCTTCTT+TGG | + | chr1.3:1579171-1579190 | None:intergenic | 10.0% |
| !!! | ATGAATTGTTATTATATTAT+TGG | - | chr1.3:1579616-1579635 | MS.gene64182:CDS | 10.0% |
| !!! | AAAAAAAGTTTTTGTTGAAA+CGG | - | chr1.3:1579231-1579250 | MS.gene64182:intron | 15.0% |
| !!! | AAAATTTGTTATACTTTAGT+TGG | - | chr1.3:1579069-1579088 | MS.gene64182:intron | 15.0% |
| !!! | ATTCATTTTTATCTAGTTAT+CGG | + | chr1.3:1579582-1579601 | None:intergenic | 15.0% |
| !!! | TAAACTTTTCTATGTAAAAA+TGG | + | chr1.3:1578348-1578367 | None:intergenic | 15.0% |
| !!! | TCAACAAAAACTTTTTTTTA+GGG | + | chr1.3:1579229-1579248 | None:intergenic | 15.0% |
| !!! | TGTAACATATTTATTTTATC+TGG | - | chr1.3:1579440-1579459 | MS.gene64182:intron | 15.0% |
| !!! | TGTTTGTATTTTATTTATGT+AGG | - | chr1.3:1579686-1579705 | MS.gene64182:intron | 15.0% |
| !!! | TTCAACAAAAACTTTTTTTT+AGG | + | chr1.3:1579230-1579249 | None:intergenic | 15.0% |
| !! | AATGTTAGTGATTAGTATTT+AGG | - | chr1.3:1579259-1579278 | MS.gene64182:intron | 20.0% |
| !! | AATTATTAGTTATATGAGTC+AGG | - | chr1.3:1577656-1577675 | MS.gene64182:intron | 20.0% |
| !! | ATACTAATCACTAACATTAT+TGG | + | chr1.3:1579257-1579276 | None:intergenic | 20.0% |
| !! | ATATTCAACCAAGAATAATA+TGG | + | chr1.3:1579956-1579975 | None:intergenic | 20.0% |
| !! | ATGTAAAAATGGAAATAAAC+AGG | + | chr1.3:1578337-1578356 | None:intergenic | 20.0% |
| !! | GAAGAAATTAATTATAACAC+AGG | + | chr1.3:1577698-1577717 | None:intergenic | 20.0% |
| !! | GACTCATATAACTAATAATT+GGG | + | chr1.3:1577656-1577675 | None:intergenic | 20.0% |
| !! | GTATTTAACCATATTATTCT+TGG | - | chr1.3:1579945-1579964 | MS.gene64182:intron | 20.0% |
| !! | GTATTTAATCATGTTACTAT+TGG | - | chr1.3:1578825-1578844 | MS.gene64182:intron | 20.0% |
| !! | TGACTCATATAACTAATAAT+TGG | + | chr1.3:1577657-1577676 | None:intergenic | 20.0% |
| !!! | AATTTTCAGTTGTAGTAATA+TGG | - | chr1.3:1578920-1578939 | MS.gene64182:intron | 20.0% |
| !!! | ACAAGAATGATTGATTTAAT+CGG | + | chr1.3:1578645-1578664 | None:intergenic | 20.0% |
| !!! | ACATATTTATTTTATCTGGA+TGG | - | chr1.3:1579444-1579463 | MS.gene64182:intron | 20.0% |
| !!! | GTACAAGTATTACTTTTTTT+AGG | - | chr1.3:1578174-1578193 | MS.gene64182:intron | 20.0% |
| !!! | TGTTTGTATTTTATTTGTGT+AGG | - | chr1.3:1578558-1578577 | MS.gene64182:intron | 20.0% |
| !!! | TTTTCAACATTCCTAAATTT+AGG | + | chr1.3:1579123-1579142 | None:intergenic | 20.0% |
| ! | AAATTTGCAATTGTAGTAAC+AGG | - | chr1.3:1580058-1580077 | MS.gene64182:CDS | 25.0% |
| ! | AATTTGCAATTGTAGTAACA+GGG | - | chr1.3:1580059-1580078 | MS.gene64182:CDS | 25.0% |
| ! | ACTCCAATGAACATAAATTA+TGG | - | chr1.3:1578750-1578769 | MS.gene64182:intron | 25.0% |
| ! | AGAATGATAGAGAAACATAT+AGG | - | chr1.3:1578063-1578082 | MS.gene64182:intron | 25.0% |
| ! | ATTGTTATAATTGATGAGTC+CGG | - | chr1.3:1578395-1578414 | MS.gene64182:intron | 25.0% |
| ! | CAACCAAAATTTATGTTCAT+TGG | + | chr1.3:1579876-1579895 | None:intergenic | 25.0% |
| ! | CAACCATAATTTATGTTCAT+TGG | + | chr1.3:1578756-1578775 | None:intergenic | 25.0% |
| ! | CAATGAACATAAATTATGGT+TGG | - | chr1.3:1578754-1578773 | MS.gene64182:intron | 25.0% |
| ! | GAATGTTGAAAATGAAATGA+TGG | - | chr1.3:1579131-1579150 | MS.gene64182:intron | 25.0% |
| !! | AAATTGATCTCTTTGATTTC+AGG | - | chr1.3:1580083-1580102 | MS.gene64182:CDS | 25.0% |
| !! | ACTCCAATGAACATAAATTT+TGG | - | chr1.3:1579870-1579889 | MS.gene64182:intron | 25.0% |
| !! | AGTATTTTTCTACTTCACAA+AGG | - | chr1.3:1579284-1579303 | MS.gene64182:intron | 25.0% |
| !! | ATTCCTTTTTATCTAGTTAC+CGG | + | chr1.3:1578417-1578436 | None:intergenic | 25.0% |
| !! | GAAAATGAAATGATGGTTTT+GGG | - | chr1.3:1579138-1579157 | MS.gene64182:intron | 25.0% |
| !! | GAAGTGTCATAGTATATAAT+TGG | - | chr1.3:1578152-1578171 | MS.gene64182:intron | 25.0% |
| !! | TATCAAGACTTTAAAAGATG+AGG | + | chr1.3:1579198-1579217 | None:intergenic | 25.0% |
| !! | TGAAAATGAAATGATGGTTT+TGG | - | chr1.3:1579137-1579156 | MS.gene64182:intron | 25.0% |
| !! | TTTTTATAGGCAAAGAAACT+TGG | - | chr1.3:1577764-1577783 | MS.gene64182:intron | 25.0% |
| !!! | CAATGAACATAAATTTTGGT+TGG | - | chr1.3:1579874-1579893 | MS.gene64182:intron | 25.0% |
| !!! | GAATTTTGAAAATCTAGTCA+AGG | - | chr1.3:1578981-1579000 | MS.gene64182:intron | 25.0% |
| !!! | TCTTTAAAATGGCAAAGTAA+AGG | + | chr1.3:1578129-1578148 | None:intergenic | 25.0% |
| !!! | TTGGTTTTAATGCTTTCTTA+GGG | - | chr1.3:1579088-1579107 | MS.gene64182:intron | 25.0% |
| AAAAGCAAAACTTCCTCAAA+TGG | + | chr1.3:1578225-1578244 | None:intergenic | 30.0% | |
| ACAAAGGAAATGACATTAAC+TGG | + | chr1.3:1578018-1578037 | None:intergenic | 30.0% | |
| ACTACAACGACTAAATCAAT+CGG | - | chr1.3:1579761-1579780 | MS.gene64182:CDS | 30.0% | |
| AGGAAATGAAAGAATCTGAT+TGG | - | chr1.3:1579706-1579725 | MS.gene64182:intron | 30.0% | |
| AGGATATTTAGTAGAAGAAG+AGG | - | chr1.3:1578609-1578628 | MS.gene64182:intron | 30.0% | |
| GCTTTGATTCTTAAGAATCT+TGG | - | chr1.3:1577618-1577637 | MS.gene64182:intron | 30.0% | |
| GTAATTTCAAGCATCTTTCA+TGG | - | chr1.3:1579471-1579490 | MS.gene64182:intron | 30.0% | |
| GTATTACTACAAATGCTTGA+TGG | - | chr1.3:1580017-1580036 | MS.gene64182:CDS | 30.0% | |
| TATATAGCACATCTTACGTT+TGG | + | chr1.3:1577908-1577927 | None:intergenic | 30.0% | |
| TATGATGAGTGATTTGAACT+TGG | - | chr1.3:1578498-1578517 | MS.gene64182:intron | 30.0% | |
| TGAACATAAATTATGGTTGG+TGG | - | chr1.3:1578757-1578776 | MS.gene64182:intron | 30.0% | |
| ! | ATTTGAGGAAGTTTTGCTTT+TGG | - | chr1.3:1578224-1578243 | MS.gene64182:intron | 30.0% |
| ! | GACACTTCTGTTCTTTAAAA+TGG | + | chr1.3:1578140-1578159 | None:intergenic | 30.0% |
| ! | TTAGGCATATTTCTTGTTGT+CGG | + | chr1.3:1577725-1577744 | None:intergenic | 30.0% |
| !!! | GTTGGTTTTAATGCTTTCTT+AGG | - | chr1.3:1579087-1579106 | MS.gene64182:intron | 30.0% |
| !!! | TGAACATAAATTTTGGTTGG+TGG | - | chr1.3:1579877-1579896 | MS.gene64182:intron | 30.0% |
| AATTGCTCTCATGTGATTTC+AGG | - | chr1.3:1578945-1578964 | MS.gene64182:intron | 35.0% | |
| AGGAAAAGATGGCAAAGTAA+AGG | + | chr1.3:1578109-1578128 | None:intergenic | 35.0% | |
| AGGAAATGAAAGAATCCGTT+TGG | - | chr1.3:1578578-1578597 | MS.gene64182:intron | 35.0% | |
| AGTCCGGTAACTAGATAAAA+AGG | - | chr1.3:1578411-1578430 | MS.gene64182:intron | 35.0% | |
| ATTGTATACTGCACCATTTG+AGG | - | chr1.3:1578209-1578228 | MS.gene64182:intron | 35.0% | |
| CAGTTAATCACCATATCTAC+CGG | + | chr1.3:1577869-1577888 | None:intergenic | 35.0% | |
| CATCTTACGTTTGGATCATA+AGG | + | chr1.3:1577899-1577918 | None:intergenic | 35.0% | |
| GAGTCAGGTAACTTTACTAT+AGG | - | chr1.3:1577671-1577690 | MS.gene64182:intron | 35.0% | |
| GATAGAGAAACATATAGGTG+AGG | - | chr1.3:1578068-1578087 | MS.gene64182:intron | 35.0% | |
| GGACTAACAGACCTAAATTT+AGG | - | chr1.3:1579109-1579128 | MS.gene64182:intron | 35.0% | |
| GGCTAAAAAATTAGCACAAG+AGG | - | chr1.3:1578263-1578282 | MS.gene64182:intron | 35.0% | |
| GTATACCATTGATGTTCTTC+CGG | + | chr1.3:1577568-1577587 | None:intergenic | 35.0% | |
| TAAACAAACTAACGAGCTCA+CGG | + | chr1.3:1579376-1579395 | None:intergenic | 35.0% | |
| TAACGATTAAAGGAGTTGGA+AGG | + | chr1.3:1579323-1579342 | None:intergenic | 35.0% | |
| TACATTCTCACTGAAATGAC+CGG | - | chr1.3:1577546-1577565 | MS.gene64182:intron | 35.0% | |
| TACTAGCTAACTCACTACAA+AGG | + | chr1.3:1577829-1577848 | None:intergenic | 35.0% | |
| TAGTTGGAGCTAACGATTAA+AGG | + | chr1.3:1579333-1579352 | None:intergenic | 35.0% | |
| TCAAATGGTGCAGTATACAA+TGG | + | chr1.3:1578210-1578229 | None:intergenic | 35.0% | |
| TGGCAAAGTAAAGGAAAAGA+TGG | + | chr1.3:1578120-1578139 | None:intergenic | 35.0% | |
| TGTAGTGAGTTAGCTAGTAA+GGG | - | chr1.3:1577830-1577849 | MS.gene64182:intron | 35.0% | |
| TTCATGATTGTGTGATCTAC+AGG | - | chr1.3:1577963-1577982 | MS.gene64182:intron | 35.0% | |
| TTGTAGTGAGTTAGCTAGTA+AGG | - | chr1.3:1577829-1577848 | MS.gene64182:intron | 35.0% | |
| ! | CTTCTCTGGAAAATATCCTT+CGG | + | chr1.3:1579736-1579755 | None:intergenic | 35.0% |
| ! | GGTTTGGTAGCTTAATTAGT+TGG | + | chr1.3:1579349-1579368 | None:intergenic | 35.0% |
| ! | TTCTCTGGAAAATATCCTTC+GGG | + | chr1.3:1579735-1579754 | None:intergenic | 35.0% |
| !! | AGGAAGTTTTGCTTTTGGAA+GGG | - | chr1.3:1578229-1578248 | MS.gene64182:intron | 35.0% |
| !! | ATCTCTTTGATTTCAGGTTC+AGG | - | chr1.3:1580089-1580108 | MS.gene64182:CDS | 35.0% |
| AAAGAATCCGTTTGGAAGAG+TGG | - | chr1.3:1578586-1578605 | MS.gene64182:intron | 40.0% | |
| AATGACCGGAAGAACATCAA+TGG | - | chr1.3:1577560-1577579 | MS.gene64182:intron | 40.0% | |
| ACTTCACAAAGGTTTGAACC+CGG | - | chr1.3:1579295-1579314 | MS.gene64182:intron | 40.0% | |
| AGATATTCCACCGGTAGATA+TGG | - | chr1.3:1577856-1577875 | MS.gene64182:intron | 40.0% | |
| ATATCCTCCACTCTTCCAAA+CGG | + | chr1.3:1578596-1578615 | None:intergenic | 40.0% | |
| ATGGTATACACTCAGCATTG+TGG | - | chr1.3:1577579-1577598 | MS.gene64182:intron | 40.0% | |
| CAATTTCATGCTTCTTGCAC+AGG | - | chr1.3:1577509-1577528 | MS.gene64182:CDS | 40.0% | |
| GAGCTAACGATTAAAGGAGT+TGG | + | chr1.3:1579327-1579346 | None:intergenic | 40.0% | |
| TAAGGGACTAGATATTCCAC+CGG | - | chr1.3:1577847-1577866 | MS.gene64182:intron | 40.0% | |
| TTAATCACCATATCTACCGG+TGG | + | chr1.3:1577866-1577885 | None:intergenic | 40.0% | |
| TTGTGATCCCAAATGAAGAG+CGG | - | chr1.3:1578034-1578053 | MS.gene64182:intron | 40.0% | |
| TTGTGGTAAAACGCTTCTTC+TGG | - | chr1.3:1577596-1577615 | MS.gene64182:intron | 40.0% | |
| ! | CGAAGGATATTTTCCAGAGA+AGG | - | chr1.3:1579734-1579753 | MS.gene64182:CDS | 40.0% |
| ! | CTCTTCATTTGGGATCACAA+AGG | + | chr1.3:1578034-1578053 | None:intergenic | 40.0% |
| !! | GAGGAAGTTTTGCTTTTGGA+AGG | - | chr1.3:1578228-1578247 | MS.gene64182:intron | 40.0% |
| ACAGGATTATATGTACCGCG+TGG | - | chr1.3:1577981-1578000 | MS.gene64182:intron | 45.0% | |
| ACTGAGCATAGTTGCGCTTT+AGG | - | chr1.3:1578297-1578316 | MS.gene64182:intron | 45.0% | |
| AGAAAGACTTGAGACCACTG+TGG | + | chr1.3:1580115-1580134 | None:intergenic | 45.0% | |
| ATTATATGTACCGCGTGGGA+TGG | - | chr1.3:1577986-1578005 | MS.gene64182:intron | 45.0% | |
| CAGGATTATATGTACCGCGT+GGG | - | chr1.3:1577982-1578001 | MS.gene64182:intron | 45.0% | |
| CCTTGAATGCGTTCAAGTCT+GGG | - | chr1.3:1577789-1577808 | MS.gene64182:intron | 45.0% | |
| CGTTGTAGTACAACCTTCTC+TGG | + | chr1.3:1579750-1579769 | None:intergenic | 45.0% | |
| CTTCACAAAGGTTTGAACCC+GGG | - | chr1.3:1579296-1579315 | MS.gene64182:intron | 45.0% | |
| CTTGAATGCGTTCAAGTCTG+GGG | - | chr1.3:1577790-1577809 | MS.gene64182:intron | 45.0% | |
| TGAATCGCCGCTCTTCATTT+GGG | + | chr1.3:1578044-1578063 | None:intergenic | 45.0% | |
| TTAAAGGAGTTGGAAGGTCC+CGG | + | chr1.3:1579317-1579336 | None:intergenic | 45.0% | |
| !! | TTATTATATTAATAAGAATT+AGG | + | chr1.3:1577743-1577762 | None:intergenic | 5.0% |
| AAACTAACGAGCTCACGGTG+GGG | + | chr1.3:1579371-1579390 | None:intergenic | 50.0% | |
| ACAAACTAACGAGCTCACGG+TGG | + | chr1.3:1579373-1579392 | None:intergenic | 50.0% | |
| CAAACTAACGAGCTCACGGT+GGG | + | chr1.3:1579372-1579391 | None:intergenic | 50.0% | |
| CCCAGACTTGAACGCATTCA+AGG | + | chr1.3:1577792-1577811 | None:intergenic | 50.0% | |
| CTGAATCGCCGCTCTTCATT+TGG | + | chr1.3:1578045-1578064 | None:intergenic | 50.0% | |
| GAATCCGTTTGGAAGAGTGG+AGG | - | chr1.3:1578589-1578608 | MS.gene64182:intron | 50.0% | |
| GAATCTGATTGGAAGCCCGA+AGG | - | chr1.3:1579717-1579736 | MS.gene64182:intron | 50.0% | |
| GCCTTGAATGCGTTCAAGTC+TGG | - | chr1.3:1577788-1577807 | MS.gene64182:intron | 50.0% | |
| TAAAGGAGTTGGAAGGTCCC+GGG | + | chr1.3:1579316-1579335 | None:intergenic | 50.0% | |
| ! | TTTGGAAGGGCGTGTTAGTG+AGG | - | chr1.3:1578242-1578261 | MS.gene64182:intron | 50.0% |
| !! | ATTTCAGGTTCAGGCCACAG+TGG | - | chr1.3:1580098-1580117 | MS.gene64182:CDS | 50.0% |
| AACTAACGAGCTCACGGTGG+GGG | + | chr1.3:1579370-1579389 | None:intergenic | 55.0% | |
| CTGGAGCAATCCATCCCACG+CGG | + | chr1.3:1577999-1578018 | None:intergenic | 60.0% | |
| ACGAGCTCACGGTGGGGGTT+TGG | + | chr1.3:1579365-1579384 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 1577498 | 1580137 | 1577498 | ID=MS.gene64182 |
| chr1.3 | mRNA | 1577498 | 1580137 | 1577498 | ID=MS.gene64182.t1;Parent=MS.gene64182 |
| chr1.3 | exon | 1579958 | 1580137 | 1579958 | ID=MS.gene64182.t1.exon1;Parent=MS.gene64182.t1 |
| chr1.3 | CDS | 1579958 | 1580137 | 1579958 | ID=cds.MS.gene64182.t1;Parent=MS.gene64182.t1 |
| chr1.3 | exon | 1579725 | 1579862 | 1579725 | ID=MS.gene64182.t1.exon2;Parent=MS.gene64182.t1 |
| chr1.3 | CDS | 1579725 | 1579862 | 1579725 | ID=cds.MS.gene64182.t1;Parent=MS.gene64182.t1 |
| chr1.3 | exon | 1579551 | 1579650 | 1579551 | ID=MS.gene64182.t1.exon3;Parent=MS.gene64182.t1 |
| chr1.3 | CDS | 1579551 | 1579650 | 1579551 | ID=cds.MS.gene64182.t1;Parent=MS.gene64182.t1 |
| chr1.3 | exon | 1579351 | 1579439 | 1579351 | ID=MS.gene64182.t1.exon4;Parent=MS.gene64182.t1 |
| chr1.3 | CDS | 1579351 | 1579439 | 1579351 | ID=cds.MS.gene64182.t1;Parent=MS.gene64182.t1 |
| chr1.3 | exon | 1579005 | 1579055 | 1579005 | ID=MS.gene64182.t1.exon5;Parent=MS.gene64182.t1 |
| chr1.3 | CDS | 1579005 | 1579055 | 1579005 | ID=cds.MS.gene64182.t1;Parent=MS.gene64182.t1 |
| chr1.3 | exon | 1578633 | 1578668 | 1578633 | ID=MS.gene64182.t1.exon6;Parent=MS.gene64182.t1 |
| chr1.3 | CDS | 1578633 | 1578668 | 1578633 | ID=cds.MS.gene64182.t1;Parent=MS.gene64182.t1 |
| chr1.3 | exon | 1577880 | 1577927 | 1577880 | ID=MS.gene64182.t1.exon7;Parent=MS.gene64182.t1 |
| chr1.3 | CDS | 1577880 | 1577927 | 1577880 | ID=cds.MS.gene64182.t1;Parent=MS.gene64182.t1 |
| chr1.3 | exon | 1577498 | 1577530 | 1577498 | ID=MS.gene64182.t1.exon8;Parent=MS.gene64182.t1 |
| chr1.3 | CDS | 1577498 | 1577530 | 1577498 | ID=cds.MS.gene64182.t1;Parent=MS.gene64182.t1 |
| Gene Sequence |
| Protein sequence |
