AlfalfaGEDB | MS.gene65951

M. sativa cultivar XinJiangDaYe / MS.gene65951

KEGG: K08176
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65951.t1	XP_003590043.1	73.5	505	3	2	1	374	29	533	4.40E-191	677.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65951.t1	O48639	59.6	490	67	3	1	360	30	518	8.0e-149	528.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65951.t1	O22302	73.5	505	3	2	1	374	29	533	3.2e-191	677.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene65951	-0.801037	1.09E-48	-1.69E-46
MS.gene049549	MS.gene65951	0.830384	3.03E-55	-1.69E-46
MS.gene049634	MS.gene65951	0.817942	2.54E-52	-1.69E-46
MS.gene050095	MS.gene65951	0.826254	3.00E-54	-1.69E-46
MS.gene050096	MS.gene65951	0.830645	2.61E-55	-1.69E-46
MS.gene050380	MS.gene65951	0.801722	7.87E-49	-1.69E-46
MS.gene050647	MS.gene65951	0.810746	9.89E-51	-1.69E-46
MS.gene050720	MS.gene65951	0.815181	1.05E-51	-1.69E-46
MS.gene05104	MS.gene65951	0.805367	1.38E-49	-1.69E-46
MS.gene051158	MS.gene65951	0.815434	9.27E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65951.t1	MTR_1g043290	85.475	358	3	1	66	374	176	533	0.0	607
MS.gene65951.t1	MTR_1g043290	100.000	67	0	0	1	67	29	95	5.37e-38	143
MS.gene65951.t1	MTR_1g043220	85.714	357	2	1	66	373	176	532	0.0	606
MS.gene65951.t1	MTR_1g043220	100.000	67	0	0	1	67	29	95	6.46e-38	143
MS.gene65951.t1	MTR_1g043200	81.564	358	17	2	66	374	176	533	0.0	575
MS.gene65951.t1	MTR_1g043200	97.015	67	2	0	1	67	29	95	5.87e-37	140
MS.gene65951.t1	MTR_1g074930	74.716	352	40	1	66	368	176	527	0.0	533
MS.gene65951.t1	MTR_1g074930	85.075	67	10	0	1	67	29	95	2.42e-31	124
MS.gene65951.t1	MTR_3g082700	66.369	336	63	2	66	352	177	511	3.09e-159	458
MS.gene65951.t1	MTR_3g082700	79.104	67	14	0	1	67	30	96	2.46e-28	116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65951.t1	AT5G43360	70.262	343	53	2	66	360	177	518	6.73e-165	472
MS.gene65951.t1	AT5G43360	77.612	67	15	0	1	67	30	96	3.24e-28	115
MS.gene65951.t1	AT5G43350	69.096	343	57	2	66	360	177	518	1.17e-162	466
MS.gene65951.t1	AT5G43350	77.612	67	15	0	1	67	30	96	2.95e-28	115
MS.gene65951.t1	AT2G32830	64.789	355	74	2	66	370	177	530	2.75e-162	466
MS.gene65951.t1	AT2G32830	77.612	67	15	0	1	67	30	96	2.24e-26	110
MS.gene65951.t1	AT3G54700	68.824	340	60	2	66	360	177	515	6.20e-161	462
MS.gene65951.t1	AT3G54700	79.104	67	14	0	1	67	30	96	9.83e-28	114
MS.gene65951.t1	AT3G54700	68.824	340	60	2	66	360	177	515	6.20e-161	462
MS.gene65951.t1	AT3G54700	79.104	67	14	0	1	67	30	96	9.83e-28	114

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Find 91 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTATCCAACTGGTAT+TGG	0.365619	1.1:+27066289	MS.gene65951:CDS
AAATCGTTGGAAGAGTTAAG+TGG	0.593957	1.1:+27066394	MS.gene65951:CDS
AAGAACTCGCTTATCATGCT+CGG	0.577140	1.1:+27066316	MS.gene65951:CDS
AAGGGTATCCAACTGGTATT+GGG	0.427208	1.1:+27066290	MS.gene65951:CDS
AATCTCAGCTGCCGCTGGAA+AGG	0.496144	1.1:+27066198	MS.gene65951:CDS
AATTATTCTTTGGTTGGCTT+GGG	0.264750	1.1:+27065120	MS.gene65951:CDS
AATTGCTCCTGCCTTTCCAG+CGG	0.674047	1.1:-27066209	None:intergenic
ACAACAAATGTTGTAGCATT+TGG	0.334728	1.1:-27066130	None:intergenic
ACAGCTGATTGAGCACTTGG+TGG	0.575728	1.1:-27065062	None:intergenic
ACATTCTTCTTTGCTAATTT+TGG	0.173620	1.1:+27066106	MS.gene65951:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACAAATGTTGTAGCATT+TGG	-	chr1.1:27066133-27066152	None:intergenic	30.0%
AGAAATGAATGCAATTCATG+AGG	+	chr1.1:27065868-27065887	MS.gene65951:CDS	30.0%
CAATAATAAGTTAATGCAGC+TGG	-	chr1.1:27065545-27065564	None:intergenic	30.0%
CAGCTGCATTAACTTATTAT+TGG	+	chr1.1:27065543-27065562	MS.gene65951:CDS	30.0%
CTCCAAACATAATCAAATTG+AGG	-	chr1.1:27065497-27065516	None:intergenic	30.0%
TGCCTCAATTTGATTATGTT+TGG	+	chr1.1:27065492-27065511	MS.gene65951:CDS	30.0%
TGGAGACTTATTCTTATGTT+CGG	+	chr1.1:27065512-27065531	MS.gene65951:CDS	30.0%
TGGTTTAACTCTAATTCTCA+TGG	+	chr1.1:27065169-27065188	MS.gene65951:intron	30.0%
TTAACTCTAATTCTCATGGT+GGG	+	chr1.1:27065173-27065192	MS.gene65951:intron	30.0%
TTTAACTCTAATTCTCATGG+TGG	+	chr1.1:27065172-27065191	MS.gene65951:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	27064954	27066471	27064954	ID=MS.gene65951
chr1.1	mRNA	27064954	27066471	27064954	ID=MS.gene65951.t1;Parent=MS.gene65951
chr1.1	exon	27064954	27065152	27064954	ID=MS.gene65951.t1.exon1;Parent=MS.gene65951.t1
chr1.1	CDS	27064954	27065152	27064954	ID=cds.MS.gene65951.t1;Parent=MS.gene65951.t1
chr1.1	exon	27065399	27065682	27065399	ID=MS.gene65951.t1.exon2;Parent=MS.gene65951.t1
chr1.1	CDS	27065399	27065682	27065399	ID=cds.MS.gene65951.t1;Parent=MS.gene65951.t1
chr1.1	exon	27065830	27066471	27065830	ID=MS.gene65951.t1.exon3;Parent=MS.gene65951.t1
chr1.1	CDS	27065830	27066471	27065830	ID=cds.MS.gene65951.t1;Parent=MS.gene65951.t1

Gene Sequence

>MS.gene65951

ATGGGTTTCTTCACTGATGCATATGATCTTTTCTGCATTTCCCTTGTCACAAAGTTGTTAGGGAGAATATATTACACAGAACCAAATCCGACAAGACCAGGAACACTTCCACCAAGTGCTCAATCAGCTGTAACTGGTGTTGCACTTGTTGGAACACTAGCAGGCCAATTATTCTTTGGTTGGCTTGGGGACAAACTTGGTAGGAAAAAAGTCTATGGTTTAACTCTAATTCTCATGGTGGGTTGTTCTGTTGCCTCAGGACTCTCTTTTGGATCAAGTCCAAAGAGTGTTATGGCAACACTTTGTTTCTTTAGGTTTTGGCTTGGTTTTGGAATTGGTGGTGATTACCCTCTTTCAGCTACAATCATGTCTGAATATGCTAACAAAAAAACTAGAGGTGCATTTATTGCTGCTGTTTTTGCTATGCAAGGTTTTGGTATCTTAGGTGGTGGAATTGTTGCTTTGATTGTGGCTTCTATATTTGATCACAAATATAAGGTTCCCACATTTGAAGAAAATCCAGCAGCATCATTGTTAGTGCCTCAATTTGATTATGTTTGGAGACTTATTCTTATGTTCGGCGCTCTTCCAGCTGCATTAACTTATTATTGGCGTATGAAAATGCCAGAAACAGCCCGTTACACAGCTCTTGTTGCCAAGAACGCGAAACAAGCTGCCGCGGATATGTCTAAGGTATTGCAAGTTGAACTTGAAGTTGAAGAGGAGAAGGTACAAAAAATGACTAGTGATAAAAGGAATAGTTATGGCTTGTTCACCAAGCAATTCGCGAAACGACATGGTTGGGCTTTGTTTGGAACATGTAGTACTTGGTTTTTGTTGGATATTGCTTTCTATAGTCAAAATCTTTTCCAAAAGGACATTTTTAGTGCAATCGGATGGATCCCTCCGGCAAAAGAAATGAATGCAATTCATGAGGTTTACAAGATTGCAAGAGCACAAACACTTATTGCGCTGTGCAGTACTGTTCCGGGTTACTGGTTCACAGTTGCGTTTATCGATTACATGGGTCGTTTCGCTATTCAAATGATGGGATTCTTCTTCATGACTGTTTTCATGTTTGCTCTTGCCATACCATATGATCATTGGAGCAAGGAAGAGAATAGAATTGGGTTTGTTGTAATGTACTCACTCACATTCTTCTTTGCTAATTTTGGTCCAAATGCTACAACATTTGTTGTACCTGCGGAGATTTTTCCGGCTAGGTTAAGGTCAACCTGTCACGGAATCTCAGCTGCCGCTGGAAAGGCAGGAGCAATTGTTGGTGCATTTGGATTCTTGTATGCTGCACAAAGTAAAGATCCTACCAAGACCGATAAAGGGTATCCAACTGGTATTGGGATTAAGAACTCGCTTATCATGCTCGGTGTGATCAACTTTGTTGGGATGTTATGCACTTTGCTTGTTCCGGAATCAAAGGGAAAATCGTTGGAAGAGTTAAGTGGAGAGAATGAGGGAGAAGGTGCCGAGGCCACTGAGCAAGAAGGATCAAGGGTTTAA

Protein sequence

>MS.gene65951.t1

MGFFTDAYDLFCISLVTKLLGRIYYTEPNPTRPGTLPPSAQSAVTGVALVGTLAGQLFFGWLGDKLGGGIVALIVASIFDHKYKVPTFEENPAASLLVPQFDYVWRLILMFGALPAALTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEVEEEKDIFSAIGWIPPAKEMNAIHEVYKIARAQTLIALCSTVPGYWFTVAFIDYMGRFAIQMMGFFFMTVFMFALAIPYDHWSKEENRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPTKTDKGYPTGIGIKNSLIMLGVINFVGMLCTLLVPESKGKSLEELSGENEGEGAEATEQEGSRV