Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68528.t1 | RHN67315.1 | 94.4 | 854 | 48 | 0 | 1 | 854 | 45 | 898 | 0.00E+00 | 1565.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68528.t1 | Q9LK64 | 64.8 | 813 | 282 | 3 | 1 | 812 | 254 | 1063 | 2.0e-302 | 1039.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68528.t1 | A0A396ITM6 | 94.4 | 854 | 48 | 0 | 1 | 854 | 45 | 898 | 0.0e+00 | 1565.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene68528 | 0.81994 | 8.92E-53 | -1.69E-46 |
| MS.gene049151 | MS.gene68528 | 0.800947 | 1.13E-48 | -1.69E-46 |
| MS.gene049153 | MS.gene68528 | 0.828733 | 7.63E-55 | -1.69E-46 |
| MS.gene049378 | MS.gene68528 | 0.800172 | 1.63E-48 | -1.69E-46 |
| MS.gene050226 | MS.gene68528 | 0.819082 | 1.40E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene68528 | 0.805544 | 1.27E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene68528 | 0.806868 | 6.67E-50 | -1.69E-46 |
| MS.gene050605 | MS.gene68528 | 0.829775 | 4.26E-55 | -1.69E-46 |
| MS.gene050623 | MS.gene68528 | -0.801575 | 8.44E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene68528 | 0.809286 | 2.04E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene68528 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene68528 | 0.819735 | 9.93E-53 | -1.69E-46 |
| MS.gene051373 | MS.gene68528 | 0.817763 | 2.79E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene68528 | 0.831438 | 1.67E-55 | -1.69E-46 |
| MS.gene052333 | MS.gene68528 | 0.805355 | 1.39E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene68528 | 0.801645 | 8.17E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene68528 | 0.818915 | 1.53E-52 | -1.69E-46 |
| MS.gene053494 | MS.gene68528 | 0.852694 | 3.90E-61 | -1.69E-46 |
| MS.gene053584 | MS.gene68528 | 0.810109 | 1.36E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene68528 | 0.810667 | 1.03E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene68528 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene68528 | 0.810838 | 9.45E-51 | -1.69E-46 |
| MS.gene055367 | MS.gene68528 | 0.821898 | 3.16E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene68528 | 0.801666 | 8.08E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene68528 | 0.872412 | 3.24E-67 | -1.69E-46 |
| MS.gene05595 | MS.gene68528 | 0.822017 | 2.97E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene68528 | 0.828255 | 9.95E-55 | -1.69E-46 |
| MS.gene057156 | MS.gene68528 | -0.803312 | 3.70E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene68528 | 0.808715 | 2.70E-50 | -1.69E-46 |
| MS.gene057996 | MS.gene68528 | 0.802355 | 5.84E-49 | -1.69E-46 |
| MS.gene058435 | MS.gene68528 | 0.824798 | 6.64E-54 | -1.69E-46 |
| MS.gene058595 | MS.gene68528 | 0.808469 | 3.05E-50 | -1.69E-46 |
| MS.gene058949 | MS.gene68528 | 0.806529 | 7.87E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene68528 | 0.828308 | 9.67E-55 | -1.69E-46 |
| MS.gene059160 | MS.gene68528 | 0.800055 | 1.72E-48 | -1.69E-46 |
| MS.gene059161 | MS.gene68528 | 0.814635 | 1.39E-51 | -1.69E-46 |
| MS.gene059162 | MS.gene68528 | 0.806978 | 6.33E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene68528 | 0.839404 | 1.62E-57 | -1.69E-46 |
| MS.gene060683 | MS.gene68528 | 0.803987 | 2.68E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene68528 | 0.803657 | 3.14E-49 | -1.69E-46 |
| MS.gene060943 | MS.gene68528 | 0.806314 | 8.74E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene68528 | 0.805037 | 1.62E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene68528 | -0.811029 | 8.59E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene68528 | 0.819936 | 8.94E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 176 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATCGGGAACAGACTTTA+TGG | 0.162731 | 3.4:-54061951 | MS.gene68528:CDS |
| GGCTGTTCTGCAAGTTTCTT+TGG | 0.175151 | 3.4:-54063567 | MS.gene68528:CDS |
| TACTGGATCCCATCTCTTTA+AGG | 0.179764 | 3.4:-54062511 | MS.gene68528:intron |
| TATGGTTGTCTATGTTTCTT+TGG | 0.191890 | 3.4:-54061531 | MS.gene68528:CDS |
| GTAATATTAAGTGTCGTTTA+AGG | 0.199315 | 3.4:-54060848 | MS.gene68528:CDS |
| GAAGTTTCAAGGTAAGTTAA+TGG | 0.223970 | 3.4:-54063441 | MS.gene68528:CDS |
| TTTGGTGATCAGACCATTAT+TGG | 0.229149 | 3.4:-54062651 | MS.gene68528:CDS |
| GGGGAAATACCGAAGATATC+TGG | 0.241212 | 3.4:-54062837 | MS.gene68528:CDS |
| AGTTTACTTTCTTGTATAAT+AGG | 0.254471 | 3.4:-54062858 | MS.gene68528:CDS |
| TATTGGAAATCTTACTCTTA+TGG | 0.256200 | 3.4:-54061549 | MS.gene68528:CDS |
| TACAGATTGCAAGCAATTAT+TGG | 0.263144 | 3.4:-54061613 | MS.gene68528:CDS |
| AAATGTATTCCTTCTCTCTA+AGG | 0.266887 | 3.4:+54061886 | None:intergenic |
| GTTTACTTTCTTGTATAATA+GGG | 0.291039 | 3.4:-54062857 | MS.gene68528:CDS |
| TTCGGTTCTTGTGTTCTTAT+AGG | 0.291483 | 3.4:-54063212 | MS.gene68528:CDS |
| AGTTGAAGTGTGGTAATATT+AGG | 0.294157 | 3.4:-54064015 | MS.gene68528:CDS |
| AAATACATCACGACAGCTTA+TGG | 0.309024 | 3.4:-54061686 | MS.gene68528:CDS |
| ATAGAAGAGAATATACTATT+TGG | 0.312512 | 3.4:-54062750 | MS.gene68528:CDS |
| GCAATCATTGAAATTGTATC+AGG | 0.319072 | 3.4:+54063113 | None:intergenic |
| AGAGTAAGATTTCCAATATC+AGG | 0.319084 | 3.4:+54061554 | None:intergenic |
| TGGCAAGGGATTCTTCTATC+TGG | 0.326743 | 3.4:-54063947 | MS.gene68528:CDS |
| ATTGAACAAGATTGTCTATA+AGG | 0.333628 | 3.4:+54063879 | None:intergenic |
| TATTCAGATTAGGAAGTTAG+AGG | 0.337600 | 3.4:-54063321 | MS.gene68528:CDS |
| GTCTATGTTTCTTTGGCAAT+TGG | 0.346553 | 3.4:-54061524 | MS.gene68528:CDS |
| TTTATTGCTGTGGTAACTTT+CGG | 0.346610 | 3.4:-54063230 | MS.gene68528:CDS |
| GATTCCCTTCTCACCAATAA+TGG | 0.347608 | 3.4:+54062638 | None:intergenic |
| ATTTACCTTCTATGTTGTTA+AGG | 0.352843 | 3.4:-54060973 | MS.gene68528:CDS |
| GCAACCGTGGAACCTGATAT+TGG | 0.353080 | 3.4:-54061566 | MS.gene68528:CDS |
| GATTGTCGCATTTCTTCGTT+TGG | 0.360907 | 3.4:-54063066 | MS.gene68528:CDS |
| ATAGGCATTCCGCTTGAATC+AGG | 0.361201 | 3.4:-54063194 | MS.gene68528:CDS |
| CTTCTATGTTGTTAAGGTCT+CGG | 0.361614 | 3.4:-54060967 | MS.gene68528:CDS |
| ATGTGGCTCAAGAAATTTCT+TGG | 0.362968 | 3.4:-54063296 | MS.gene68528:CDS |
| AGTGCAGTTGATGCTCATAC+TGG | 0.365916 | 3.4:-54062528 | MS.gene68528:CDS |
| AGTTCCATTGGCACTGTCAT+TGG | 0.378909 | 3.4:+54064063 | None:intergenic |
| GTAAATCCCCATGCTATGTT+TGG | 0.387904 | 3.4:+54060990 | None:intergenic |
| AGTTCCAACAGGTTGGTGTT+AGG | 0.392430 | 3.4:-54063751 | MS.gene68528:CDS |
| GAAAACATAGATGATCAAAA+AGG | 0.399977 | 3.4:-54061797 | MS.gene68528:CDS |
| GAAGCTTCCGCGAGGTAGTT+CGG | 0.401915 | 3.4:-54063018 | MS.gene68528:CDS |
| GGTTCCACGGTTGCTGAAAC+AGG | 0.402131 | 3.4:+54061575 | None:intergenic |
| TTCTATGTTGTTAAGGTCTC+GGG | 0.406418 | 3.4:-54060966 | MS.gene68528:CDS |
| ACAGACTTTATGGAACTTGT+AGG | 0.416658 | 3.4:-54061941 | MS.gene68528:CDS |
| CTATTTCAGGAGTGTTTGCT+TGG | 0.417309 | 3.4:-54062198 | MS.gene68528:intron |
| AAACCAAGGTTTCTCTAGAT+AGG | 0.418054 | 3.4:-54063088 | MS.gene68528:CDS |
| AAGCAATTATTGGATGGCTT+TGG | 0.418159 | 3.4:-54061603 | MS.gene68528:CDS |
| GAGGTCTTTCTTCAATGAAC+AGG | 0.418769 | 3.4:+54062686 | None:intergenic |
| TCAGCATTCTTACTTTCTCA+TGG | 0.423490 | 3.4:-54064153 | None:intergenic |
| TTCATTTAGGTCATGAAAGA+AGG | 0.424131 | 3.4:-54062010 | MS.gene68528:intron |
| TCTGGGAACTTGAAGGTTTG+TGG | 0.432086 | 3.4:-54062819 | MS.gene68528:CDS |
| GGCATGAGGGTTGCTGTTTG+TGG | 0.433933 | 3.4:-54062903 | MS.gene68528:CDS |
| AAAGCAATGGAAGGTCTTCA+TGG | 0.434851 | 3.4:+54064089 | None:intergenic |
| TTACTGCCTAAGGTTATTAG+TGG | 0.437056 | 3.4:+54064124 | None:intergenic |
| CGAGACCTTAACAACATAGA+AGG | 0.437715 | 3.4:+54060968 | None:intergenic |
| ATGAGCATCAACTGCACTAA+AGG | 0.438226 | 3.4:+54062533 | None:intergenic |
| ATAGCTATTGAAATAGTAGA+TGG | 0.439038 | 3.4:-54062993 | MS.gene68528:CDS |
| TATCGAAGATTATTCAGATT+AGG | 0.440345 | 3.4:-54063331 | MS.gene68528:CDS |
| CTGGATGTTTAAGTTCCAAC+AGG | 0.443958 | 3.4:-54063762 | MS.gene68528:CDS |
| TACAATGACATTCTTACATC+GGG | 0.458836 | 3.4:-54061965 | MS.gene68528:CDS |
| TATAGTATTGATTCCTGTCA+TGG | 0.459028 | 3.4:-54060904 | MS.gene68528:CDS |
| GATGTCTCAAGTTGCGTGGC+AGG | 0.462604 | 3.4:-54060931 | MS.gene68528:CDS |
| GAAGATATCTGGGAACTTGA+AGG | 0.463096 | 3.4:-54062826 | MS.gene68528:CDS |
| TAGTAGATGGAAATTTCTCT+TGG | 0.463106 | 3.4:-54062980 | MS.gene68528:CDS |
| GAACGAGAAAAGGGCAGAGT+TGG | 0.464084 | 3.4:-54061725 | MS.gene68528:CDS |
| GTTTGTGGTACGGTTGGATC+AGG | 0.467072 | 3.4:-54062888 | MS.gene68528:CDS |
| CTGTCATGGCAACCTGCATA+TGG | 0.467341 | 3.4:-54060890 | MS.gene68528:CDS |
| TTTATTCTACATAGAAGTGT+AGG | 0.467899 | 3.4:-54063539 | MS.gene68528:CDS |
| TTACCACAGCAATAAATGTC+GGG | 0.469580 | 3.4:+54063237 | None:intergenic |
| TCAAGACGAAGAACGAGAAA+AGG | 0.474443 | 3.4:-54061735 | MS.gene68528:CDS |
| CATATGCAGGTTGCCATGAC+AGG | 0.476457 | 3.4:+54060891 | None:intergenic |
| GACATATCATTCAACTTGAA+TGG | 0.480743 | 3.4:+54060761 | None:intergenic |
| CTATTAAGAATTCTTCCACT+TGG | 0.483385 | 3.4:+54061374 | None:intergenic |
| AACCTAATACCTTAAAGAGA+TGG | 0.483995 | 3.4:+54062502 | None:intergenic |
| GAAGGAAGGATAACACAATC+AGG | 0.489114 | 3.4:-54061992 | MS.gene68528:CDS |
| AACGAGAAAAGGGCAGAGTT+GGG | 0.492125 | 3.4:-54061724 | MS.gene68528:CDS |
| TTCAAGTTCCCAGATATCTT+CGG | 0.492942 | 3.4:+54062828 | None:intergenic |
| GGGAAATACCGAAGATATCT+GGG | 0.493604 | 3.4:-54062836 | MS.gene68528:CDS |
| AGTAGATGGAAATTTCTCTT+GGG | 0.495675 | 3.4:-54062979 | MS.gene68528:CDS |
| GTTGCTGTTTGTGGTACGGT+TGG | 0.496264 | 3.4:-54062894 | MS.gene68528:CDS |
| TGAGCATCAACTGCACTAAA+GGG | 0.496823 | 3.4:+54062534 | None:intergenic |
| GTATCAATGATCTATGCTAA+AGG | 0.500171 | 3.4:-54063713 | MS.gene68528:CDS |
| GCAGATATATATCAGCATCT+TGG | 0.502369 | 3.4:+54062565 | None:intergenic |
| TTGTTCTTCTCAACATGGCA+AGG | 0.503122 | 3.4:-54063962 | MS.gene68528:CDS |
| CAGTTAAGTCCTTAGAGAGA+AGG | 0.507987 | 3.4:-54061895 | MS.gene68528:CDS |
| TATTTGGTAGAGAGATGGAT+AGG | 0.508435 | 3.4:-54062734 | MS.gene68528:CDS |
| TTATTCTACATAGAAGTGTA+GGG | 0.511986 | 3.4:-54063538 | MS.gene68528:CDS |
| GTATCAGGAAGACTATAGAT+AGG | 0.512041 | 3.4:+54063128 | None:intergenic |
| CTTGAAGGTTTGTGGAACAA+AGG | 0.513664 | 3.4:-54062811 | MS.gene68528:CDS |
| ACCTAATACCTTAAAGAGAT+GGG | 0.515725 | 3.4:+54062503 | None:intergenic |
| AAGTTACACGGCACATCTGA+CGG | 0.516852 | 3.4:-54061773 | MS.gene68528:CDS |
| CAAGACGAAGAACGAGAAAA+GGG | 0.518758 | 3.4:-54061734 | MS.gene68528:CDS |
| AACAAGATTGTCTATAAGGT+AGG | 0.521824 | 3.4:+54063883 | None:intergenic |
| TTTACTTTCTTGTATAATAG+GGG | 0.522466 | 3.4:-54062856 | MS.gene68528:CDS |
| CAGACCATTATTGGTGAGAA+GGG | 0.524146 | 3.4:-54062642 | MS.gene68528:CDS |
| GATTGCAAGCAATTATTGGA+TGG | 0.527924 | 3.4:-54061609 | MS.gene68528:CDS |
| GATTCTTAAACTTCAAGCAT+GGG | 0.529201 | 3.4:-54063366 | MS.gene68528:CDS |
| ACAAGTATCAGATCAGCATC+AGG | 0.529284 | 3.4:+54062123 | None:intergenic |
| GACCACTATTAACCTTGCTA+AGG | 0.529660 | 3.4:-54063987 | MS.gene68528:CDS |
| GAGGGTTGCTGTTTGTGGTA+CGG | 0.530060 | 3.4:-54062898 | MS.gene68528:CDS |
| GTTCAAAGATAAAAGAATGA+AGG | 0.537435 | 3.4:-54063417 | MS.gene68528:CDS |
| TGCTCATATCTAGTGCACTT+TGG | 0.537780 | 3.4:+54061015 | None:intergenic |
| ACCTATCCTTTCAGCATCAA+CGG | 0.538040 | 3.4:+54063622 | None:intergenic |
| AACCTTAGCAAGGTTAATAG+TGG | 0.538402 | 3.4:+54063985 | None:intergenic |
| TTCAATGATTGCACAAACCA+AGG | 0.542119 | 3.4:-54063102 | MS.gene68528:CDS |
| TATACTATTTGGTAGAGAGA+TGG | 0.545889 | 3.4:-54062739 | MS.gene68528:CDS |
| AAGAATTCTTCCACTTGGTG+TGG | 0.545932 | 3.4:+54061379 | None:intergenic |
| TCAGACCATTATTGGTGAGA+AGG | 0.549229 | 3.4:-54062643 | MS.gene68528:CDS |
| AATCCTATCTAGAGAAACCT+TGG | 0.549868 | 3.4:+54063085 | None:intergenic |
| ATAATGGTCTGATCACCAAA+TGG | 0.550452 | 3.4:+54062654 | None:intergenic |
| GCATCCTAACACCAACCTGT+TGG | 0.550870 | 3.4:+54063747 | None:intergenic |
| TGCCCCGACATTTATTGCTG+TGG | 0.550929 | 3.4:-54063240 | MS.gene68528:CDS |
| GGCAACCTGCATATGGTACC+AGG | 0.551598 | 3.4:-54060883 | MS.gene68528:CDS |
| TGAGCATTCCAAACATAGCA+TGG | 0.552210 | 3.4:-54060998 | MS.gene68528:CDS |
| GTTACCACAGCAATAAATGT+CGG | 0.553439 | 3.4:+54063236 | None:intergenic |
| GAGCATTCCAAACATAGCAT+GGG | 0.554666 | 3.4:-54060997 | MS.gene68528:CDS |
| ATTTCCAATATCAGGTTCCA+CGG | 0.558814 | 3.4:+54061562 | None:intergenic |
| CTGTCAGTCGAAAACGAAAG+AGG | 0.559698 | 3.4:-54063678 | MS.gene68528:CDS |
| TAATGACCGTTGATGCTGAA+AGG | 0.560489 | 3.4:-54063628 | MS.gene68528:CDS |
| CTTTCACAGACACTCACTGA+GGG | 0.562304 | 3.4:-54061638 | MS.gene68528:CDS |
| GTTGGTACATGCATGATCCA+TGG | 0.562915 | 3.4:-54063592 | MS.gene68528:CDS |
| ACTTGCAGAACAGCCATCCA+TGG | 0.565698 | 3.4:+54063575 | None:intergenic |
| GGATTCTTAAACTTCAAGCA+TGG | 0.566560 | 3.4:-54063367 | MS.gene68528:CDS |
| TGTTCTTCTCAACATGGCAA+GGG | 0.567781 | 3.4:-54063961 | MS.gene68528:CDS |
| GACTACCTGGTACCATATGC+AGG | 0.568025 | 3.4:+54060878 | None:intergenic |
| TCACTGCAAGAGAAGTTTCA+AGG | 0.569005 | 3.4:-54063452 | MS.gene68528:CDS |
| TCTACCAATGACAGTGCCAA+TGG | 0.570240 | 3.4:-54064067 | MS.gene68528:CDS |
| ATTTGGTAGAGAGATGGATA+GGG | 0.572704 | 3.4:-54062733 | MS.gene68528:CDS |
| GAAAACAAGGCTAAAAGTGA+AGG | 0.573412 | 3.4:-54063845 | MS.gene68528:CDS |
| AGTTACACGGCACATCTGAC+GGG | 0.575081 | 3.4:-54061772 | MS.gene68528:CDS |
| TTCTCTTGCAGTGATGCCAC+AGG | 0.576556 | 3.4:+54063461 | None:intergenic |
| TTAGGAAGTTAGAGGAGATG+TGG | 0.578212 | 3.4:-54063313 | MS.gene68528:CDS |
| ATACAATGACATTCTTACAT+CGG | 0.578456 | 3.4:-54061966 | MS.gene68528:CDS |
| GGATAGGGAAAAGTATGAGA+AGG | 0.578787 | 3.4:-54062718 | MS.gene68528:CDS |
| TTTAGGTCATGAAAGAAGGA+AGG | 0.585402 | 3.4:-54062006 | MS.gene68528:intron |
| AATTCTGAATGTTGCAAGAG+CGG | 0.586794 | 3.4:+54063160 | None:intergenic |
| ATCTTGCCACTCTGTATCCA+CGG | 0.588392 | 3.4:+54062771 | None:intergenic |
| CAACATCACAACTACGGTGG+CGG | 0.589311 | 3.4:+54063493 | None:intergenic |
| GTCTGTGAAAGCAATATCAA+AGG | 0.590315 | 3.4:+54061650 | None:intergenic |
| ATGTTTAAGTTCCAACAGGT+TGG | 0.590791 | 3.4:-54063758 | MS.gene68528:CDS |
| TACACATGTGCTACTTATGT+AGG | 0.591278 | 3.4:-54063908 | MS.gene68528:CDS |
| AAGATCTTTCCTGATTCAAG+CGG | 0.597159 | 3.4:+54063185 | None:intergenic |
| TTTGGCTATGATGTTTGTTG+CGG | 0.597507 | 3.4:-54063816 | MS.gene68528:CDS |
| TGTTAGGATGCAATCAATGT+TGG | 0.598911 | 3.4:-54063735 | MS.gene68528:CDS |
| CTGTCATTGGTAGAAAGCAA+TGG | 0.600257 | 3.4:+54064076 | None:intergenic |
| AGAAGAACAAAACCTTAGCA+AGG | 0.602748 | 3.4:+54063975 | None:intergenic |
| ACAAGATTGTCTATAAGGTA+GGG | 0.603856 | 3.4:+54063884 | None:intergenic |
| TGTCAGTCGAAAACGAAAGA+GGG | 0.605376 | 3.4:-54063677 | MS.gene68528:CDS |
| CACGGCACATCTGACGGGAA+AGG | 0.608300 | 3.4:-54061767 | MS.gene68528:CDS |
| AAGGGAATCAATTTGAGTGG+TGG | 0.610532 | 3.4:-54062624 | MS.gene68528:CDS |
| TATTCTACATAGAAGTGTAG+GGG | 0.612374 | 3.4:-54063537 | MS.gene68528:CDS |
| TATTACACAAGGAGACTACC+TGG | 0.613338 | 3.4:+54060865 | None:intergenic |
| TTGATTGAAGAGCATTGTGG+AGG | 0.622055 | 3.4:+54061445 | None:intergenic |
| CTGAGATTCTAATGAACATG+AGG | 0.622456 | 3.4:-54063388 | MS.gene68528:CDS |
| GTTTAGCAACATCACAACTA+CGG | 0.623131 | 3.4:+54063487 | None:intergenic |
| ATGACACCACTAATAACCTT+AGG | 0.635930 | 3.4:-54064130 | MS.gene68528:CDS |
| TGATTTGCAGACAGATGTAG+TGG | 0.637431 | 3.4:-54063042 | MS.gene68528:CDS |
| ATACCTAAATGATGAAAACA+AGG | 0.639337 | 3.4:-54063858 | MS.gene68528:CDS |
| AACGAGCTTGAGTTGAAGTG+TGG | 0.641139 | 3.4:-54064025 | MS.gene68528:CDS |
| GTACATGCATGATCCATGGA+TGG | 0.648632 | 3.4:-54063588 | MS.gene68528:CDS |
| CATTTGATTGAAGAGCATTG+TGG | 0.655973 | 3.4:+54061442 | None:intergenic |
| TACCACAGCAATAAATGTCG+GGG | 0.657933 | 3.4:+54063238 | None:intergenic |
| CTGTGATGTCTCAAGTTGCG+TGG | 0.659444 | 3.4:-54060935 | MS.gene68528:CDS |
| AACTCCTGTTTCAGCAACCG+TGG | 0.659529 | 3.4:-54061579 | MS.gene68528:CDS |
| CATTGGTAGAAAGCAATGGA+AGG | 0.660788 | 3.4:+54064080 | None:intergenic |
| TTCATTGAAGAAAGACCTCG+AGG | 0.661291 | 3.4:-54062682 | MS.gene68528:CDS |
| ACGACACTTAATATTACACA+AGG | 0.669027 | 3.4:+54060854 | None:intergenic |
| ACGAAAGAGGGACACAGCAG+CGG | 0.673330 | 3.4:-54063665 | MS.gene68528:CDS |
| CACCAAATGGTAAAACCTCG+AGG | 0.676036 | 3.4:+54062667 | None:intergenic |
| AGCATTCCAAACATAGCATG+GGG | 0.676393 | 3.4:-54060996 | MS.gene68528:CDS |
| ACCGTTGATGCTGAAAGGAT+AGG | 0.676514 | 3.4:-54063623 | MS.gene68528:CDS |
| TACATCACGACAGCTTATGG+AGG | 0.677553 | 3.4:-54061683 | MS.gene68528:CDS |
| GAGAAGGGAATCAATTTGAG+TGG | 0.703850 | 3.4:-54062627 | MS.gene68528:CDS |
| CAATCACCGTGGATACAGAG+TGG | 0.715340 | 3.4:-54062777 | MS.gene68528:CDS |
| GCTTTCACAGACACTCACTG+AGG | 0.716159 | 3.4:-54061639 | MS.gene68528:CDS |
| TAGCAACATCACAACTACGG+TGG | 0.724731 | 3.4:+54063490 | None:intergenic |
| CTTATGTTGCTCAATCACCG+TGG | 0.728763 | 3.4:-54062788 | MS.gene68528:CDS |
| GATGTTGCTAAACTATCCTG+TGG | 0.743620 | 3.4:-54063477 | MS.gene68528:CDS |
| GCTATATCCGAACTACCTCG+CGG | 0.762020 | 3.4:+54063011 | None:intergenic |
| GTAGTGGAGAAGCTTCCGCG+AGG | 0.783428 | 3.4:-54063026 | MS.gene68528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAAATCGAGTATTA+CGG | - | chr3.4:54063049-54063068 | MS.gene68528:CDS | 15.0% |
| !!! | ATCTTTTTTACAATTCATTT+AGG | - | chr3.4:54062893-54062912 | MS.gene68528:CDS | 15.0% |
| !!! | TAAATTTTGGTTTTACTTTT+TGG | - | chr3.4:54063861-54063880 | MS.gene68528:CDS | 15.0% |
| !! | ACAAGAAATTTCATTCAATA+TGG | + | chr3.4:54063840-54063859 | None:intergenic | 20.0% |
| !! | AGTTTACTTTCTTGTATAAT+AGG | - | chr3.4:54062058-54062077 | MS.gene68528:intron | 20.0% |
| !! | ATAGAAGAGAATATACTATT+TGG | - | chr3.4:54062166-54062185 | MS.gene68528:CDS | 20.0% |
| !! | GTTTACTTTCTTGTATAATA+GGG | - | chr3.4:54062059-54062078 | MS.gene68528:intron | 20.0% |
| !! | TTTACTTTCTTGTATAATAG+GGG | - | chr3.4:54062060-54062079 | MS.gene68528:intron | 20.0% |
| !!! | GAAATTTCTTGTCTAAATTT+TGG | - | chr3.4:54063848-54063867 | MS.gene68528:CDS | 20.0% |
| !!! | TTTCTACCATTGATTTAAAT+CGG | + | chr3.4:54063637-54063656 | None:intergenic | 20.0% |
| ! | AAAAGTTGAAAAAGTTCCAT+TGG | + | chr3.4:54060868-54060887 | None:intergenic | 25.0% |
| ! | ATACAATGACATTCTTACAT+CGG | - | chr3.4:54062950-54062969 | MS.gene68528:CDS | 25.0% |
| ! | ATACCTAAATGATGAAAACA+AGG | - | chr3.4:54061058-54061077 | MS.gene68528:intron | 25.0% |
| ! | ATAGCTATTGAAATAGTAGA+TGG | - | chr3.4:54061923-54061942 | MS.gene68528:CDS | 25.0% |
| ! | ATTAACTTCTGTACTATTTC+AGG | - | chr3.4:54062705-54062724 | MS.gene68528:CDS | 25.0% |
| ! | ATTGAACAAGATTGTCTATA+AGG | + | chr3.4:54061040-54061059 | None:intergenic | 25.0% |
| ! | ATTTACCTTCTATGTTGTTA+AGG | - | chr3.4:54063943-54063962 | MS.gene68528:CDS | 25.0% |
| ! | CAAAACTAGTGTAATTCTAT+TGG | + | chr3.4:54062648-54062667 | None:intergenic | 25.0% |
| ! | GAAAACATAGATGATCAAAA+AGG | - | chr3.4:54063119-54063138 | MS.gene68528:CDS | 25.0% |
| ! | GTTCAAAGATAAAAGAATGA+AGG | - | chr3.4:54061499-54061518 | MS.gene68528:CDS | 25.0% |
| ! | TATCGAAGATTATTCAGATT+AGG | - | chr3.4:54061585-54061604 | MS.gene68528:CDS | 25.0% |
| ! | TATTGGAAATCTTACTCTTA+TGG | - | chr3.4:54063367-54063386 | MS.gene68528:CDS | 25.0% |
| !! | TTATTCTACATAGAAGTGTA+GGG | - | chr3.4:54061378-54061397 | MS.gene68528:CDS | 25.0% |
| !! | TTTATTCTACATAGAAGTGT+AGG | - | chr3.4:54061377-54061396 | MS.gene68528:CDS | 25.0% |
| !!! | ATAAATCTTCGAGTTTTTCA+TGG | - | chr3.4:54061992-54062011 | MS.gene68528:CDS | 25.0% |
| !!! | GTAATATTAAGTGTCGTTTA+AGG | - | chr3.4:54064068-54064087 | MS.gene68528:CDS | 25.0% |
| !!! | TAAAAGTGAAGGCTATTTTT+TGG | - | chr3.4:54061082-54061101 | MS.gene68528:intron | 25.0% |
| !!! | TGGTTTTACTTTTTGGTTAT+AGG | - | chr3.4:54063868-54063887 | MS.gene68528:CDS | 25.0% |
| AAATGTATTCCTTCTCTCTA+AGG | + | chr3.4:54063033-54063052 | None:intergenic | 30.0% | |
| AACAAGATTGTCTATAAGGT+AGG | + | chr3.4:54061036-54061055 | None:intergenic | 30.0% | |
| AACCTAATACCTTAAAGAGA+TGG | + | chr3.4:54062417-54062436 | None:intergenic | 30.0% | |
| ACAAGATTGTCTATAAGGTA+GGG | + | chr3.4:54061035-54061054 | None:intergenic | 30.0% | |
| ACCTAATACCTTAAAGAGAT+GGG | + | chr3.4:54062416-54062435 | None:intergenic | 30.0% | |
| ACGACACTTAATATTACACA+AGG | + | chr3.4:54064065-54064084 | None:intergenic | 30.0% | |
| AGAGTAAGATTTCCAATATC+AGG | + | chr3.4:54063365-54063384 | None:intergenic | 30.0% | |
| AGTAGATGGAAATTTCTCTT+GGG | - | chr3.4:54061937-54061956 | MS.gene68528:CDS | 30.0% | |
| AGTTGAAGTGTGGTAATATT+AGG | - | chr3.4:54060901-54060920 | MS.gene68528:CDS | 30.0% | |
| CTATTAAGAATTCTTCCACT+TGG | + | chr3.4:54063545-54063564 | None:intergenic | 30.0% | |
| CTGTTATAACATCAAAGATC+TGG | - | chr3.4:54062595-54062614 | MS.gene68528:CDS | 30.0% | |
| GAAGTTTCAAGGTAAGTTAA+TGG | - | chr3.4:54061475-54061494 | MS.gene68528:CDS | 30.0% | |
| GATCAAAAAGGAAAGTTACA+CGG | - | chr3.4:54063131-54063150 | MS.gene68528:CDS | 30.0% | |
| GATTCTTAAACTTCAAGCAT+GGG | - | chr3.4:54061550-54061569 | MS.gene68528:CDS | 30.0% | |
| GCAATCATTGAAATTGTATC+AGG | + | chr3.4:54061806-54061825 | None:intergenic | 30.0% | |
| GTATCAATGATCTATGCTAA+AGG | - | chr3.4:54061203-54061222 | MS.gene68528:intron | 30.0% | |
| TAAAAAATCGAGTATTACGG+AGG | - | chr3.4:54063052-54063071 | MS.gene68528:CDS | 30.0% | |
| TACAATGACATTCTTACATC+GGG | - | chr3.4:54062951-54062970 | MS.gene68528:CDS | 30.0% | |
| TACAGATTGCAAGCAATTAT+TGG | - | chr3.4:54063303-54063322 | MS.gene68528:CDS | 30.0% | |
| TAGTAGATGGAAATTTCTCT+TGG | - | chr3.4:54061936-54061955 | MS.gene68528:CDS | 30.0% | |
| TATACTATTTGGTAGAGAGA+TGG | - | chr3.4:54062177-54062196 | MS.gene68528:CDS | 30.0% | |
| TATGGTTGTCTATGTTTCTT+TGG | - | chr3.4:54063385-54063404 | MS.gene68528:CDS | 30.0% | |
| TATTCAGATTAGGAAGTTAG+AGG | - | chr3.4:54061595-54061614 | MS.gene68528:CDS | 30.0% | |
| TTCATTTAGGTCATGAAAGA+AGG | - | chr3.4:54062906-54062925 | MS.gene68528:CDS | 30.0% | |
| TTTATTGCTGTGGTAACTTT+CGG | - | chr3.4:54061686-54061705 | MS.gene68528:CDS | 30.0% | |
| ! | AAAGGATAGGTGAATTTTGT+TGG | - | chr3.4:54061306-54061325 | MS.gene68528:intron | 30.0% |
| ! | TAAAGTCTTTTTACTGCCTA+AGG | + | chr3.4:54060805-54060824 | None:intergenic | 30.0% |
| ! | TATTCTACATAGAAGTGTAG+GGG | - | chr3.4:54061379-54061398 | MS.gene68528:CDS | 30.0% |
| ! | TTTTGTGACAAAAACTTTCG+TGG | - | chr3.4:54062512-54062531 | MS.gene68528:CDS | 30.0% |
| !! | TACCATTGATTTAAATCGGA+CGG | + | chr3.4:54063633-54063652 | None:intergenic | 30.0% |
| !! | TATAGTATTGATTCCTGTCA+TGG | - | chr3.4:54064012-54064031 | MS.gene68528:CDS | 30.0% |
| !!! | TAGCCTTGTTTTCATCATTT+AGG | + | chr3.4:54061064-54061083 | None:intergenic | 30.0% |
| !!! | TAGTTTTGTTGTGCATTAGA+TGG | - | chr3.4:54062660-54062679 | MS.gene68528:CDS | 30.0% |
| AAACCAAGGTTTCTCTAGAT+AGG | - | chr3.4:54061828-54061847 | MS.gene68528:CDS | 35.0% | |
| AAATACATCACGACAGCTTA+TGG | - | chr3.4:54063230-54063249 | MS.gene68528:CDS | 35.0% | |
| AACCTTAGCAAGGTTAATAG+TGG | + | chr3.4:54060934-54060953 | None:intergenic | 35.0% | |
| AAGATCTTTCCTGATTCAAG+CGG | + | chr3.4:54061734-54061753 | None:intergenic | 35.0% | |
| AAGCAATTATTGGATGGCTT+TGG | - | chr3.4:54063313-54063332 | MS.gene68528:CDS | 35.0% | |
| AATCCTATCTAGAGAAACCT+TGG | + | chr3.4:54061834-54061853 | None:intergenic | 35.0% | |
| AATTCTGAATGTTGCAAGAG+CGG | + | chr3.4:54061759-54061778 | None:intergenic | 35.0% | |
| ACAGACTTTATGGAACTTGT+AGG | - | chr3.4:54062975-54062994 | MS.gene68528:CDS | 35.0% | |
| AGAAGAACAAAACCTTAGCA+AGG | + | chr3.4:54060944-54060963 | None:intergenic | 35.0% | |
| ATAATGGTCTGATCACCAAA+TGG | + | chr3.4:54062265-54062284 | None:intergenic | 35.0% | |
| ATGACACCACTAATAACCTT+AGG | - | chr3.4:54060786-54060805 | MS.gene68528:CDS | 35.0% | |
| ATGTGGCTCAAGAAATTTCT+TGG | - | chr3.4:54061620-54061639 | MS.gene68528:CDS | 35.0% | |
| ATTTCCAATATCAGGTTCCA+CGG | + | chr3.4:54063357-54063376 | None:intergenic | 35.0% | |
| ATTTGGTAGAGAGATGGATA+GGG | - | chr3.4:54062183-54062202 | MS.gene68528:CDS | 35.0% | |
| CGATGTGCATAATACACTAT+TGG | + | chr3.4:54062572-54062591 | None:intergenic | 35.0% | |
| CTGAGATTCTAATGAACATG+AGG | - | chr3.4:54061528-54061547 | MS.gene68528:CDS | 35.0% | |
| CTTCTATGTTGTTAAGGTCT+CGG | - | chr3.4:54063949-54063968 | MS.gene68528:CDS | 35.0% | |
| GAAAACAAGGCTAAAAGTGA+AGG | - | chr3.4:54061071-54061090 | MS.gene68528:intron | 35.0% | |
| GATTGCAAGCAATTATTGGA+TGG | - | chr3.4:54063307-54063326 | MS.gene68528:CDS | 35.0% | |
| GCAGATATATATCAGCATCT+TGG | + | chr3.4:54062354-54062373 | None:intergenic | 35.0% | |
| GGATTCTTAAACTTCAAGCA+TGG | - | chr3.4:54061549-54061568 | MS.gene68528:CDS | 35.0% | |
| GTATCAGGAAGACTATAGAT+AGG | + | chr3.4:54061791-54061810 | None:intergenic | 35.0% | |
| GTCTATGTTTCTTTGGCAAT+TGG | - | chr3.4:54063392-54063411 | MS.gene68528:CDS | 35.0% | |
| GTCTGTGAAAGCAATATCAA+AGG | + | chr3.4:54063269-54063288 | None:intergenic | 35.0% | |
| GTTACCACAGCAATAAATGT+CGG | + | chr3.4:54061683-54061702 | None:intergenic | 35.0% | |
| GTTTAGCAACATCACAACTA+CGG | + | chr3.4:54061432-54061451 | None:intergenic | 35.0% | |
| TATTTGGTAGAGAGATGGAT+AGG | - | chr3.4:54062182-54062201 | MS.gene68528:CDS | 35.0% | |
| TGTTAGGATGCAATCAATGT+TGG | - | chr3.4:54061181-54061200 | MS.gene68528:intron | 35.0% | |
| TTACCACAGCAATAAATGTC+GGG | + | chr3.4:54061682-54061701 | None:intergenic | 35.0% | |
| TTACTGCCTAAGGTTATTAG+TGG | + | chr3.4:54060795-54060814 | None:intergenic | 35.0% | |
| TTCAATGATTGCACAAACCA+AGG | - | chr3.4:54061814-54061833 | MS.gene68528:CDS | 35.0% | |
| TTCGGTTCTTGTGTTCTTAT+AGG | - | chr3.4:54061704-54061723 | MS.gene68528:CDS | 35.0% | |
| TTCTATGTTGTTAAGGTCTC+GGG | - | chr3.4:54063950-54063969 | MS.gene68528:CDS | 35.0% | |
| TTTAGGTCATGAAAGAAGGA+AGG | - | chr3.4:54062910-54062929 | MS.gene68528:CDS | 35.0% | |
| TTTCACGCAGTAATCAATCT+CGG | + | chr3.4:54063717-54063736 | None:intergenic | 35.0% | |
| ! | ATGTTTAAGTTCCAACAGGT+TGG | - | chr3.4:54061158-54061177 | MS.gene68528:intron | 35.0% |
| ! | TTCAAGTTCCCAGATATCTT+CGG | + | chr3.4:54062091-54062110 | None:intergenic | 35.0% |
| ! | TTTGGCTATGATGTTTGTTG+CGG | - | chr3.4:54061100-54061119 | MS.gene68528:intron | 35.0% |
| ! | TTTGGTGATCAGACCATTAT+TGG | - | chr3.4:54062265-54062284 | MS.gene68528:intron | 35.0% |
| !! | CATTTGATTGAAGAGCATTG+TGG | + | chr3.4:54063477-54063496 | None:intergenic | 35.0% |
| !! | TACACATGTGCTACTTATGT+AGG | - | chr3.4:54061008-54061027 | MS.gene68528:CDS | 35.0% |
| !! | TCCCATCTCTTTAAGGTATT+AGG | - | chr3.4:54062412-54062431 | MS.gene68528:intron | 35.0% |
| !!! | AGGTTTTGTTCTTCTCAACA+TGG | - | chr3.4:54060949-54060968 | MS.gene68528:CDS | 35.0% |
| !!! | TCTATCTGGTTTTTTTGCGT+TGG | - | chr3.4:54060983-54061002 | MS.gene68528:CDS | 35.0% |
| AAAGCAATGGAAGGTCTTCA+TGG | + | chr3.4:54060830-54060849 | None:intergenic | 40.0% | |
| AAGGGAATCAATTTGAGTGG+TGG | - | chr3.4:54062292-54062311 | MS.gene68528:intron | 40.0% | |
| ACAAGTATCAGATCAGCATC+AGG | + | chr3.4:54062796-54062815 | None:intergenic | 40.0% | |
| ACCTATCCTTTCAGCATCAA+CGG | + | chr3.4:54061297-54061316 | None:intergenic | 40.0% | |
| AGCATTCCAAACATAGCATG+GGG | - | chr3.4:54063920-54063939 | MS.gene68528:CDS | 40.0% | |
| ATGAGCATCAACTGCACTAA+AGG | + | chr3.4:54062386-54062405 | None:intergenic | 40.0% | |
| CAAGACGAAGAACGAGAAAA+GGG | - | chr3.4:54063182-54063201 | MS.gene68528:CDS | 40.0% | |
| CAGACCATTATTGGTGAGAA+GGG | - | chr3.4:54062274-54062293 | MS.gene68528:intron | 40.0% | |
| CAGTTAAGTCCTTAGAGAGA+AGG | - | chr3.4:54063021-54063040 | MS.gene68528:CDS | 40.0% | |
| CATTGGTAGAAAGCAATGGA+AGG | + | chr3.4:54060839-54060858 | None:intergenic | 40.0% | |
| CGAGACCTTAACAACATAGA+AGG | + | chr3.4:54063951-54063970 | None:intergenic | 40.0% | |
| CTGTCATTGGTAGAAAGCAA+TGG | + | chr3.4:54060843-54060862 | None:intergenic | 40.0% | |
| CTTGAAGGTTTGTGGAACAA+AGG | - | chr3.4:54062105-54062124 | MS.gene68528:intron | 40.0% | |
| GAAGATATCTGGGAACTTGA+AGG | - | chr3.4:54062090-54062109 | MS.gene68528:intron | 40.0% | |
| GAAGGAAGGATAACACAATC+AGG | - | chr3.4:54062924-54062943 | MS.gene68528:CDS | 40.0% | |
| GACCACTATTAACCTTGCTA+AGG | - | chr3.4:54060929-54060948 | MS.gene68528:CDS | 40.0% | |
| GACCGTCCGATTTAAATCAA+TGG | - | chr3.4:54063628-54063647 | MS.gene68528:CDS | 40.0% | |
| GAGAAGGGAATCAATTTGAG+TGG | - | chr3.4:54062289-54062308 | MS.gene68528:intron | 40.0% | |
| GAGCATTCCAAACATAGCAT+GGG | - | chr3.4:54063919-54063938 | MS.gene68528:CDS | 40.0% | |
| GAGGTCTTTCTTCAATGAAC+AGG | + | chr3.4:54062233-54062252 | None:intergenic | 40.0% | |
| GATGTTGCTAAACTATCCTG+TGG | - | chr3.4:54061439-54061458 | MS.gene68528:CDS | 40.0% | |
| GATTACTGCGTGAAATTGTG+CGG | - | chr3.4:54063722-54063741 | MS.gene68528:CDS | 40.0% | |
| GATTCCCTTCTCACCAATAA+TGG | + | chr3.4:54062281-54062300 | None:intergenic | 40.0% | |
| GATTGTCGCATTTCTTCGTT+TGG | - | chr3.4:54061850-54061869 | MS.gene68528:CDS | 40.0% | |
| GGGAAATACCGAAGATATCT+GGG | - | chr3.4:54062080-54062099 | MS.gene68528:intron | 40.0% | |
| GTAAATCCCCATGCTATGTT+TGG | + | chr3.4:54063929-54063948 | None:intergenic | 40.0% | |
| TAATGACCGTTGATGCTGAA+AGG | - | chr3.4:54061288-54061307 | MS.gene68528:intron | 40.0% | |
| TACATCGGGAACAGACTTTA+TGG | - | chr3.4:54062965-54062984 | MS.gene68528:CDS | 40.0% | |
| TACCACAGCAATAAATGTCG+GGG | + | chr3.4:54061681-54061700 | None:intergenic | 40.0% | |
| TACTAAGCCATGATGAGATG+TGG | + | chr3.4:54063767-54063786 | None:intergenic | 40.0% | |
| TACTGGATCCCATCTCTTTA+AGG | - | chr3.4:54062405-54062424 | MS.gene68528:intron | 40.0% | |
| TATCACAGCAAAAACTGCTC+TGG | + | chr3.4:54063438-54063457 | None:intergenic | 40.0% | |
| TATTACACAAGGAGACTACC+TGG | + | chr3.4:54064054-54064073 | None:intergenic | 40.0% | |
| TCAAGACGAAGAACGAGAAA+AGG | - | chr3.4:54063181-54063200 | MS.gene68528:CDS | 40.0% | |
| TCACTGCAAGAGAAGTTTCA+AGG | - | chr3.4:54061464-54061483 | MS.gene68528:CDS | 40.0% | |
| TCAGACCATTATTGGTGAGA+AGG | - | chr3.4:54062273-54062292 | MS.gene68528:intron | 40.0% | |
| TGAGCATCAACTGCACTAAA+GGG | + | chr3.4:54062385-54062404 | None:intergenic | 40.0% | |
| TGAGCATTCCAAACATAGCA+TGG | - | chr3.4:54063918-54063937 | MS.gene68528:CDS | 40.0% | |
| TGCTCATATCTAGTGCACTT+TGG | + | chr3.4:54063904-54063923 | None:intergenic | 40.0% | |
| TGTCAGTCGAAAACGAAAGA+GGG | - | chr3.4:54061239-54061258 | MS.gene68528:intron | 40.0% | |
| TGTTCTTCTCAACATGGCAA+GGG | - | chr3.4:54060955-54060974 | MS.gene68528:CDS | 40.0% | |
| TTAGGAAGTTAGAGGAGATG+TGG | - | chr3.4:54061603-54061622 | MS.gene68528:CDS | 40.0% | |
| TTCATTGAAGAAAGACCTCG+AGG | - | chr3.4:54062234-54062253 | MS.gene68528:intron | 40.0% | |
| TTGTGCGGTATTATTACTGC+AGG | - | chr3.4:54063737-54063756 | MS.gene68528:CDS | 40.0% | |
| TTGTTCTTCTCAACATGGCA+AGG | - | chr3.4:54060954-54060973 | MS.gene68528:CDS | 40.0% | |
| TTGTTGTGCATTAGATGGCA+AGG | - | chr3.4:54062665-54062684 | MS.gene68528:CDS | 40.0% | |
| ! | AAGAATTCTTCCACTTGGTG+TGG | + | chr3.4:54063540-54063559 | None:intergenic | 40.0% |
| ! | AGAGCATCAACAGCACTAAA+GGG | + | chr3.4:54062488-54062507 | None:intergenic | 40.0% |
| ! | CTGGATGTTTAAGTTCCAAC+AGG | - | chr3.4:54061154-54061173 | MS.gene68528:intron | 40.0% |
| ! | GGATAGGGAAAAGTATGAGA+AGG | - | chr3.4:54062198-54062217 | MS.gene68528:intron | 40.0% |
| ! | TCGAGTTTTTCATGGCATGA+GGG | - | chr3.4:54062000-54062019 | MS.gene68528:CDS | 40.0% |
| ! | TGATTTGCAGACAGATGTAG+TGG | - | chr3.4:54061874-54061893 | MS.gene68528:CDS | 40.0% |
| ! | TTGTCGAGTGTTTTTCACAG+AGG | - | chr3.4:54061129-54061148 | MS.gene68528:intron | 40.0% |
| !! | AAGAGCATCAACAGCACTAA+AGG | + | chr3.4:54062489-54062508 | None:intergenic | 40.0% |
| !! | CTATTTCAGGAGTGTTTGCT+TGG | - | chr3.4:54062718-54062737 | MS.gene68528:CDS | 40.0% |
| !! | TTCGAGTTTTTCATGGCATG+AGG | - | chr3.4:54061999-54062018 | MS.gene68528:CDS | 40.0% |
| !! | TTGATTGAAGAGCATTGTGG+AGG | + | chr3.4:54063474-54063493 | None:intergenic | 40.0% |
| AACGAGAAAAGGGCAGAGTT+GGG | - | chr3.4:54063192-54063211 | MS.gene68528:CDS | 45.0% | |
| AAGTTACACGGCACATCTGA+CGG | - | chr3.4:54063143-54063162 | MS.gene68528:CDS | 45.0% | |
| ACCGTTGATGCTGAAAGGAT+AGG | - | chr3.4:54061293-54061312 | MS.gene68528:intron | 45.0% | |
| AGCAAAAACTGCTCTGGCAA+GGG | + | chr3.4:54063432-54063451 | None:intergenic | 45.0% | |
| AGGCAATCCACATCTCATCA+TGG | - | chr3.4:54063757-54063776 | MS.gene68528:CDS | 45.0% | |
| AGTTCCATTGGCACTGTCAT+TGG | + | chr3.4:54060856-54060875 | None:intergenic | 45.0% | |
| ATAGGCATTCCGCTTGAATC+AGG | - | chr3.4:54061722-54061741 | MS.gene68528:CDS | 45.0% | |
| ATCTTGCCACTCTGTATCCA+CGG | + | chr3.4:54062148-54062167 | None:intergenic | 45.0% | |
| CACCAAATGGTAAAACCTCG+AGG | + | chr3.4:54062252-54062271 | None:intergenic | 45.0% | |
| CTGTCAGTCGAAAACGAAAG+AGG | - | chr3.4:54061238-54061257 | MS.gene68528:intron | 45.0% | |
| CTTATGTTGCTCAATCACCG+TGG | - | chr3.4:54062128-54062147 | MS.gene68528:CDS | 45.0% | |
| CTTTCACAGACACTCACTGA+GGG | - | chr3.4:54063278-54063297 | MS.gene68528:CDS | 45.0% | |
| GCAGTAATCAATCTCGGTCT+CGG | + | chr3.4:54063711-54063730 | None:intergenic | 45.0% | |
| GGCTGTTCTGCAAGTTTCTT+TGG | - | chr3.4:54061349-54061368 | MS.gene68528:intron | 45.0% | |
| GGGGAAATACCGAAGATATC+TGG | - | chr3.4:54062079-54062098 | MS.gene68528:intron | 45.0% | |
| GTACATGCATGATCCATGGA+TGG | - | chr3.4:54061328-54061347 | MS.gene68528:intron | 45.0% | |
| GTTGGTACATGCATGATCCA+TGG | - | chr3.4:54061324-54061343 | MS.gene68528:intron | 45.0% | |
| TACATCACGACAGCTTATGG+AGG | - | chr3.4:54063233-54063252 | MS.gene68528:CDS | 45.0% | |
| TAGCAACATCACAACTACGG+TGG | + | chr3.4:54061429-54061448 | None:intergenic | 45.0% | |
| TCTACCAATGACAGTGCCAA+TGG | - | chr3.4:54060849-54060868 | MS.gene68528:CDS | 45.0% | |
| TCTGGGAACTTGAAGGTTTG+TGG | - | chr3.4:54062097-54062116 | MS.gene68528:intron | 45.0% | |
| TGGCAAGGGATTCTTCTATC+TGG | - | chr3.4:54060969-54060988 | MS.gene68528:CDS | 45.0% | |
| ! | AGTGCAGTTGATGCTCATAC+TGG | - | chr3.4:54062388-54062407 | MS.gene68528:intron | 45.0% |
| ! | CTCTTTCGTTTTCGACTGAC+AGG | + | chr3.4:54061240-54061259 | None:intergenic | 45.0% |
| ! | GACCTCGAGGTTTTACCATT+TGG | - | chr3.4:54062247-54062266 | MS.gene68528:intron | 45.0% |
| ! | GTGGCATCGAAAAACGACAT+AGG | + | chr3.4:54063521-54063540 | None:intergenic | 45.0% |
| !! | AACGAGCTTGAGTTGAAGTG+TGG | - | chr3.4:54060891-54060910 | MS.gene68528:CDS | 45.0% |
| !! | AGTGTTTTTCACAGAGGCAC+TGG | - | chr3.4:54061135-54061154 | MS.gene68528:intron | 45.0% |
| !! | AGTTCCAACAGGTTGGTGTT+AGG | - | chr3.4:54061165-54061184 | MS.gene68528:intron | 45.0% |
| !! | GCAGTTTTTGCTGTGATAGC+TGG | - | chr3.4:54063440-54063459 | MS.gene68528:CDS | 45.0% |
| !! | TTTTTCGATGCCACACCAAG+TGG | - | chr3.4:54063527-54063546 | MS.gene68528:CDS | 45.0% |
| AAAAACTGCTCTGGCAAGGG+TGG | + | chr3.4:54063429-54063448 | None:intergenic | 50.0% | |
| AACTCCTGTTTCAGCAACCG+TGG | - | chr3.4:54063337-54063356 | MS.gene68528:CDS | 50.0% | |
| ACTTGCAGAACAGCCATCCA+TGG | + | chr3.4:54061344-54061363 | None:intergenic | 50.0% | |
| AGTTACACGGCACATCTGAC+GGG | - | chr3.4:54063144-54063163 | MS.gene68528:CDS | 50.0% | |
| CAACATCACAACTACGGTGG+CGG | + | chr3.4:54061426-54061445 | None:intergenic | 50.0% | |
| CAATCACCGTGGATACAGAG+TGG | - | chr3.4:54062139-54062158 | MS.gene68528:CDS | 50.0% | |
| CAGCAAAAACTGCTCTGGCA+AGG | + | chr3.4:54063433-54063452 | None:intergenic | 50.0% | |
| CATATGCAGGTTGCCATGAC+AGG | + | chr3.4:54064028-54064047 | None:intergenic | 50.0% | |
| CTCGGCCATTAGTTGGAGAT+CGG | + | chr3.4:54063693-54063712 | None:intergenic | 50.0% | |
| CTGTCATGGCAACCTGCATA+TGG | - | chr3.4:54064026-54064045 | MS.gene68528:CDS | 50.0% | |
| GAACGAGAAAAGGGCAGAGT+TGG | - | chr3.4:54063191-54063210 | MS.gene68528:CDS | 50.0% | |
| GACTACCTGGTACCATATGC+AGG | + | chr3.4:54064041-54064060 | None:intergenic | 50.0% | |
| GCAACCGTGGAACCTGATAT+TGG | - | chr3.4:54063350-54063369 | MS.gene68528:CDS | 50.0% | |
| GCATCCTAACACCAACCTGT+TGG | + | chr3.4:54061172-54061191 | None:intergenic | 50.0% | |
| GCCATTAGTTGGAGATCGGA+CGG | + | chr3.4:54063689-54063708 | None:intergenic | 50.0% | |
| GCTATATCCGAACTACCTCG+CGG | + | chr3.4:54061908-54061927 | None:intergenic | 50.0% | |
| GCTTTCACAGACACTCACTG+AGG | - | chr3.4:54063277-54063296 | MS.gene68528:CDS | 50.0% | |
| GTTTGTGGTACGGTTGGATC+AGG | - | chr3.4:54062028-54062047 | MS.gene68528:intron | 50.0% | |
| TCCGTCCGATCTCCAACTAA+TGG | - | chr3.4:54063685-54063704 | MS.gene68528:CDS | 50.0% | |
| TGCCCCGACATTTATTGCTG+TGG | - | chr3.4:54061676-54061695 | MS.gene68528:CDS | 50.0% | |
| TTCTCTTGCAGTGATGCCAC+AGG | + | chr3.4:54061458-54061477 | None:intergenic | 50.0% | |
| ! | CTGTGATGTCTCAAGTTGCG+TGG | - | chr3.4:54063981-54064000 | MS.gene68528:CDS | 50.0% |
| !! | GAGGGTTGCTGTTTGTGGTA+CGG | - | chr3.4:54062018-54062037 | MS.gene68528:intron | 50.0% |
| !! | GTTGCTGTTTGTGGTACGGT+TGG | - | chr3.4:54062022-54062041 | MS.gene68528:intron | 50.0% |
| ACGAAAGAGGGACACAGCAG+CGG | - | chr3.4:54061251-54061270 | MS.gene68528:intron | 55.0% | |
| GAAGCTTCCGCGAGGTAGTT+CGG | - | chr3.4:54061898-54061917 | MS.gene68528:CDS | 55.0% | |
| GGCAACCTGCATATGGTACC+AGG | - | chr3.4:54064033-54064052 | MS.gene68528:CDS | 55.0% | |
| GGTTCCACGGTTGCTGAAAC+AGG | + | chr3.4:54063344-54063363 | None:intergenic | 55.0% | |
| TCTCGGTCTCGGCCATTAGT+TGG | + | chr3.4:54063700-54063719 | None:intergenic | 55.0% | |
| ! | GATGTCTCAAGTTGCGTGGC+AGG | - | chr3.4:54063985-54064004 | MS.gene68528:CDS | 55.0% |
| !! | GGCATGAGGGTTGCTGTTTG+TGG | - | chr3.4:54062013-54062032 | MS.gene68528:intron | 55.0% |
| CACGGCACATCTGACGGGAA+AGG | - | chr3.4:54063149-54063168 | MS.gene68528:CDS | 60.0% | |
| ! | GTAGTGGAGAAGCTTCCGCG+AGG | - | chr3.4:54061890-54061909 | MS.gene68528:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 54060767 | 54064171 | 54060767 | ID=MS.gene68528 |
| chr3.4 | mRNA | 54060767 | 54064171 | 54060767 | ID=MS.gene68528.t1;Parent=MS.gene68528 |
| chr3.4 | exon | 54062512 | 54064171 | 54062512 | ID=MS.gene68528.t1.exon1;Parent=MS.gene68528.t1 |
| chr3.4 | CDS | 54062512 | 54064171 | 54062512 | ID=cds.MS.gene68528.t1;Parent=MS.gene68528.t1 |
| chr3.4 | exon | 54062125 | 54062211 | 54062125 | ID=MS.gene68528.t1.exon2;Parent=MS.gene68528.t1 |
| chr3.4 | CDS | 54062125 | 54062211 | 54062125 | ID=cds.MS.gene68528.t1;Parent=MS.gene68528.t1 |
| chr3.4 | exon | 54061373 | 54062023 | 54061373 | ID=MS.gene68528.t1.exon3;Parent=MS.gene68528.t1 |
| chr3.4 | CDS | 54061373 | 54062023 | 54061373 | ID=cds.MS.gene68528.t1;Parent=MS.gene68528.t1 |
| chr3.4 | exon | 54060767 | 54061048 | 54060767 | ID=MS.gene68528.t1.exon4;Parent=MS.gene68528.t1 |
| chr3.4 | CDS | 54060767 | 54061048 | 54060767 | ID=cds.MS.gene68528.t1;Parent=MS.gene68528.t1 |
| Gene Sequence |
| Protein sequence |
